Specifications
==============

Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt3/NC_045136.1/NC_045136/Repetitive_sequence/123.misa.ini"

Definement of microsatellites (unit size / minimum number of repeats):
(1/10) (2/6) (3/5) (4/5) (5/5) (6/5) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           682840
Total number of identified SSRs:                 62
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	42
2	17
3	3

Frequency of identified SSR motifs
----------------------------------

Repeats	5	6	7	8	9	10	11	12	total
A	-	-	-	-	-	13	2	1	16
G	-	-	-	-	-	4	2	1	7
T	-	-	-	-	-	14	4	1	19
AG	-	3	1						4
AT	-	4	1						5
CT	-	1							1
TA	-	4	1			1			6
TC	-	1							1
CAT		2							2
CTT	1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	5	6	7	8	9	10	11	12	total
A/T	-	-	-	-	-	27	6	2	35
C/G	-	-	-	-	-	4	2	1	7
AG/CT	-	5	1						6
AT/AT	-	8	2			1			11
AAG/CTT	1								1
ATC/ATG		2							2