123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_045136
Parameters: 2 7 7 80 10 50 500
Length:  682840

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17549--17609	27	2.3	27	91	5	97	27	11	21	39	1.88
17561--17613	27	2.0	27	100	0	106	22	15	22	39	1.91
58285--58316	7	4.6	7	96	0	55	25	0	75	0	0.81
96281--96316	15	2.5	15	86	4	56	13	22	8	55	1.65
147620--147697	23	3.5	23	64	7	70	12	33	19	34	1.90
149048--149089	21	2.0	21	100	0	84	23	19	23	33	1.97
149049--149101	21	2.5	21	90	0	79	22	22	16	37	1.94
184637--184697	30	2.0	30	96	0	113	16	21	19	42	1.89
211575--211610	18	2.0	18	100	0	72	38	11	22	27	1.88
241823--241960	70	2.0	70	92	2	233	24	23	13	37	1.92
331717--331742	13	2.0	13	100	0	52	7	38	23	30	1.83
333248--333304	19	3.0	19	97	0	105	31	14	26	28	1.94
343581--343646	24	2.8	24	73	11	73	21	25	18	34	1.96
343699--343758	31	1.9	31	93	6	104	40	13	20	26	1.89
343698--343766	31	2.3	29	83	13	95	43	11	21	23	1.85
345328--345363	18	2.0	18	100	0	72	22	27	11	38	1.88
351122--351167	22	2.1	23	92	8	78	6	23	26	43	1.78
353146--353204	30	2.0	30	93	3	102	35	10	40	13	1.78
354143--354168	13	2.0	13	100	0	52	30	30	7	30	1.85
389452--389481	15	2.0	15	93	0	51	13	30	13	43	1.82
399896--399934	19	2.1	19	100	0	78	33	15	15	35	1.89
408522--408549	14	2.0	14	100	0	56	57	21	7	14	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
471668--471709	22	1.9	22	100	0	84	40	14	16	28	1.88
529001--529053	26	2.0	26	100	0	106	32	15	22	30	1.94
540596--540716	57	2.1	57	100	0	242	28	17	19	33	1.95
569813--569848	18	2.0	18	100	0	72	38	5	44	11	1.63
582837--582874	15	2.7	15	92	8	62	68	0	26	5	1.11
661272--661315	21	2.1	21	83	8	54	18	2	22	56	1.52
669526--669556	13	2.5	13	94	5	55	51	12	16	19	1.76
679342--679368	13	2.1	13	100	0	54	22	14	0	62	1.31
679907--679942	18	2.0	18	100	0	72	11	44	5	38	1.63

Tables:   1

The End!