123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_060990
Parameters: 2 7 7 80 10 50 500
Length:  728635

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4980--5054	24	3.1	24	72	14	82	34	13	13	38	1.84
35680--35711	15	2.1	15	100	0	64	18	6	18	56	1.62
36060--36097	19	2.0	19	100	0	76	36	5	36	21	1.76
36451--36475	13	1.9	13	100	0	50	56	8	28	8	1.57
40458--40490	12	2.7	13	86	13	52	24	12	21	42	1.86
46705--46734	14	2.1	14	93	0	51	60	30	3	6	1.39
50262--50405	69	2.1	69	93	2	245	30	16	21	31	1.95
50488--50548	20	3.1	19	79	6	59	52	8	19	19	1.71
50496--50548	20	2.7	20	82	5	63	52	7	16	22	1.69
90119--90157	18	2.2	18	90	4	62	76	12	5	5	1.11
95027--95068	21	2.0	21	100	0	84	38	4	14	42	1.66
99903--99932	14	2.1	14	93	0	51	60	30	3	6	1.39
103460--103603	69	2.1	69	93	2	245	30	16	21	31	1.95
103686--103746	20	3.1	19	79	6	59	52	8	19	19	1.71
103694--103746	20	2.7	20	82	5	63	52	7	16	22	1.69
105587--105643	22	2.7	21	82	15	64	45	21	14	19	1.85
146280--146330	22	2.3	22	86	0	75	45	21	19	13	1.85
153145--153201	26	2.5	21	75	24	69	29	29	5	35	1.79
153286--153320	14	2.5	14	90	0	61	20	22	17	40	1.92
158208--158238	15	2.1	15	100	0	62	51	6	12	29	1.65
168204--168256	20	2.7	20	82	5	63	22	16	7	52	1.69
168204--168264	20	3.1	19	76	6	59	19	19	8	52	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
168332--168480	69	2.2	69	86	2	210	34	21	16	27	1.95
168347--168493	69	2.1	69	92	2	251	32	21	16	29	1.95
239063--239105	21	2.0	21	90	0	68	39	20	23	16	1.92
256052--256076	6	4.2	6	100	0	50	0	52	0	48	1.00
261722--261808	15	5.8	15	97	0	156	21	20	12	44	1.85
291786--291816	15	2.1	15	100	0	62	51	6	12	29	1.65
318412--318436	13	1.9	13	100	0	50	64	0	36	0	0.94
335367--335396	3	10.0	3	100	0	60	66	0	0	33	0.92
337968--338023	29	1.9	29	96	0	103	41	19	14	25	1.89
338035--338116	43	1.9	43	92	0	137	30	24	19	25	1.98
338269--338324	27	2.1	27	93	0	94	25	26	7	41	1.81
338935--338983	19	2.6	19	87	3	73	32	6	44	16	1.72
349297--349329	16	2.1	16	94	0	57	54	15	9	21	1.68
357124--357167	17	2.6	17	100	0	88	59	0	15	25	1.37
366498--366641	69	2.1	69	93	2	245	30	16	21	31	1.95
366724--366784	20	3.1	19	79	6	59	52	8	19	19	1.71
366732--366784	20	2.7	20	82	5	63	52	7	16	22	1.69
385237--385263	13	2.1	13	100	0	54	22	14	7	55	1.64
388989--389098	52	2.1	52	100	0	220	28	18	30	23	1.98
424486--424529	19	2.4	18	85	7	61	81	4	6	6	0.97
424486--424522	17	2.1	18	90	5	58	83	5	5	5	0.90
424491--424529	19	2.1	19	95	0	69	87	2	5	5	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
428883--428917	16	2.2	16	100	0	70	68	5	5	20	1.31
461309--461339	15	2.1	15	100	0	62	22	12	32	32	1.92
472271--472310	16	2.7	14	88	7	53	12	40	17	30	1.86
542068--542109	20	2.2	19	83	12	50	28	21	0	50	1.49
600534--600562	11	2.7	11	94	5	51	89	0	10	0	0.48
603232--603306	39	1.9	39	91	0	123	38	14	25	21	1.91
604753--604790	20	1.9	20	88	0	58	18	2	15	63	1.43
608663--608712	6	8.3	6	100	0	100	50	0	16	34	1.45
609671--609720	14	3.6	14	86	2	66	36	32	18	14	1.90
609668--609720	28	1.9	27	88	3	79	35	32	18	13	1.90
610510--610548	20	2.0	20	94	0	69	12	12	30	43	1.81
610583--610623	18	2.3	18	86	0	55	17	9	24	48	1.76
611094--611160	27	2.5	27	87	4	91	16	10	28	44	1.80
611210--611270	16	3.9	16	97	2	115	11	11	32	44	1.76
627689--627715	14	1.9	14	100	0	54	29	14	29	25	1.95
638583--638631	24	2.0	24	96	0	89	34	12	18	34	1.88
638733--638780	20	2.4	20	82	6	62	22	18	6	52	1.68
640734--640776	20	2.2	20	83	8	52	34	16	37	11	1.85
671603--671686	22	3.8	22	83	1	114	45	26	16	11	1.82
671828--671859	16	2.0	16	93	0	55	40	18	21	18	1.91
671829--671868	16	2.5	16	83	0	53	40	17	27	15	1.89
671863--671910	24	2.0	24	95	0	87	43	22	20	12	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
671907--671960	24	2.2	24	90	0	81	40	20	35	3	1.70
672415--672459	23	2.0	23	95	4	83	37	31	8	22	1.85
673687--673744	15	3.8	15	73	13	64	39	17	12	31	1.86
673693--673755	31	2.0	31	100	0	126	39	15	15	28	1.89
713518--713565	15	3.1	15	93	3	78	60	0	0	39	0.97

Tables:   1

The End!