Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_060990
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 728635
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Found at i:5007 original size:24 final size:24
Alignment explanation
Indices: 4980--5054 Score: 82
Period size: 24 Copynumber: 3.1 Consensus size: 24
4970 ATTACCATTT
4980 TTCATTGAAACATCAATCTTTTGA
1 TTCATTGAAACATCAATCTTTTGA
* **
5004 TTCATTGAAGA-A-GAAGAATTTTGA
1 TTCATTGAA-ACATCAA-TCTTTTGA
*
5028 TTCATTGAAACATCAATCTGTTGA
1 TTCATTGAAACATCAATCTTTTGA
5052 TTC
1 TTC
5055 TCAATCTGAA
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
23 3 0.08
24 34 0.85
25 3 0.08
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (24 bp):
TTCATTGAAACATCAATCTTTTGA
Left flanking sequence: Indices 4480 -- 4979
CAAGGTGACCCGCTTTCTCCTATCCTTTTTTTTTTGCCTAGCTGAAGACTTCTTGAGTCGTGGGC
TTTCTAAGCTTTTTTCTGAAAAGCAAATTGCTGCTATCTCAGCTCCTCGAAATTGTACTGCTCCT
TTTATTTGCAGACGAGATTTTTGTTTAACATCACATCAGTCCCAGCGCAATTAGCACAAGTTTGT
CTTCTTCTGTTGAATCAATTTCATAAGAGATATGATTATTCAGACCATCCATGGCATGAATTATG
ATACCCTCAAAACTACTAATAGTTAATTGAGACAAGGGTCTAGCTTTTAGGGGCGACAGGGTGTA
TCTTCCTTCCCTTATGCTTTTCTGAATCTCTTTCACTTTTCTTTCAGTCAATTCTGGAAATAAAT
CTTCTAATTCATAGTATGTACCCAAGATATAGCCCGCAAGCGTATCCAACGAACAAAATGGATGA
GTATCATGACTACTAAAATCTCTTCGTTGAGGAAGATTACCATTT
Right flanking sequence: Indices 5055 -- 5554
TCAATCTGAATATTAGAATCTCTCTTTTGAGACAAATATCTTAGAATAAGATGATTCTTATTATT
CATTTCACGTACGATGAGTTTCATATTGAAATCCAGGCCATGCTGTATTATTGCTGCCATGAACA
TTTCCGTTTAGATCAGTCTGTCTTTTTGTCTTTCTAGCCATTGGTAAAAGTTAGATGGCTAAAAG
TTATTTGGGGTTTTTGGATGTTAATTAAAAAACACATCAAATGAAAATATTGGGATCCATTGTTA
ATGGAAGTAATGCTTGGGATTTTCTTTTTGGGGGATAGTACATAAGTATATGATATAATCGAGGG
GTATTTGATTGGATCGGTCGGCTCCTACGGGTGGAGCCTCCCTCGCCTCGATCTGACGTGAGCTC
GCATAATCGTAAGTATCTTAGTGCAAGGTTTTTCGAGAAAAGGTCCCATCCTTCAATATCATGAT
TGGGTCGACCAGGCCAGATCATGAGTAAATAGAAAATCGAAAACG
Found at i:35700 original size:15 final size:15
Alignment explanation
Indices: 35680--35711 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
35670 ATACCCCACT
35680 TTTCGGTATTAATTG
1 TTTCGGTATTAATTG
35695 TTTCGGTATTAATTG
1 TTTCGGTATTAATTG
35710 TT
1 TT
35712 CTACCACCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.19, C:0.06, G:0.19, T:0.56
Consensus pattern (15 bp):
TTTCGGTATTAATTG
Left flanking sequence: Indices 35180 -- 35679
ACATACGGGTTTCCCCCTCTCAAGATTGCTTTTATTAAGGCTTTCGTTCCAGTCCCTCTGTCTTC
CATTACGTTAGTAGGTCGATAGGCTCCAATAGAGAGGTTGCTTGCTAAGGAGTCAACCAAGCCAG
TTCTTTTCAAGCCTTACAGCTGGTGAGAAAAATCAAAGAGATCAGGAGCAGGAGGAAAGAGCAAA
TCAAATGAAGGGGAAAGGTAAGATAACGGAAAAGATCTTCAAGACAAAGAATTAGCTAAAAGACA
TCCTCTCTTTCTTACTTCTTACTTCCCCCCGCTAAGCTAAATATTCCCGATCCCACGTAAATATC
TCACTTATATCACCTACCTCCCTTGTTACCTCTTCCCCTACCCCAATATCCGGTATTACTTGTTC
TATATCCGGTATTACTTCCTCCTTCTTCCTCCCACTATTTCTTACTCCCCCCGGAATTATTATTA
CCTCCCCCATTTCGTATTATTACCTATTACCTCCCATACCCCACT
Right flanking sequence: Indices 35712 -- 36211
CTACCACCTATTTGTCACCTATTTGTTATTCCCCCAATTAATAGAAAGAGTCGAGGAAAGAAAGA
GGTAGTTAAAGTTGTTCTTCAAGGTAGGAAATAAAGATAGTAATTGTTCCAGTTGTTTAGTACAG
GAAAGTTATTAGTAGTTCAGGTATTAGTAATTGTAGTTGTACTTTTGAGTTAATGAGTAACTCGA
CTCCCAAAGGAGAGGAGAGTTACGTATGAGTTATTGTTTGTTCAAGGAATCAGGAAGTAGTAGTG
AAAGTCTTACTTGTAGTTGGAGTTGCTAAAGGAAATAAATACAGGAAATACAGGAGCTATATGTG
TATTACTTACTTCCCAAGTCAAGGCAGGAAGTAGTAATTGGAGCAGGAAGTAGTAATTGGATATT
CCCTGAAGTAGTCCTTGAGTTACTACCAGGAGCTTTGAGTTACTACCATTTATTATTACCTACCT
CTTTCTTAGCCTACCTATTTGTTAACTACCTCCCGCCTTAGAGCC
Found at i:36084 original size:19 final size:19
Alignment explanation
Indices: 36060--36097 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
36050 CCAAGTCAAG
36060 GCAGGAAGTAGTAATTGGA
1 GCAGGAAGTAGTAATTGGA
36079 GCAGGAAGTAGTAATTGGA
1 GCAGGAAGTAGTAATTGGA
36098 TATTCCCTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.05, G:0.37, T:0.21
Consensus pattern (19 bp):
GCAGGAAGTAGTAATTGGA
Left flanking sequence: Indices 35560 -- 36059
TTACTTGTTCTATATCCGGTATTACTTCCTCCTTCTTCCTCCCACTATTTCTTACTCCCCCCGGA
ATTATTATTACCTCCCCCATTTCGTATTATTACCTATTACCTCCCATACCCCACTTTTCGGTATT
AATTGTTTCGGTATTAATTGTTCTACCACCTATTTGTCACCTATTTGTTATTCCCCCAATTAATA
GAAAGAGTCGAGGAAAGAAAGAGGTAGTTAAAGTTGTTCTTCAAGGTAGGAAATAAAGATAGTAA
TTGTTCCAGTTGTTTAGTACAGGAAAGTTATTAGTAGTTCAGGTATTAGTAATTGTAGTTGTACT
TTTGAGTTAATGAGTAACTCGACTCCCAAAGGAGAGGAGAGTTACGTATGAGTTATTGTTTGTTC
AAGGAATCAGGAAGTAGTAGTGAAAGTCTTACTTGTAGTTGGAGTTGCTAAAGGAAATAAATACA
GGAAATACAGGAGCTATATGTGTATTACTTACTTCCCAAGTCAAG
Right flanking sequence: Indices 36098 -- 36597
TATTCCCTGAAGTAGTCCTTGAGTTACTACCAGGAGCTTTGAGTTACTACCATTTATTATTACCT
ACCTCTTTCTTAGCCTACCTATTTGTTAACTACCTCCCGCCTTAGAGCCTCCCCCGGCCTTTGTA
ACCTACCTCCAGTACTTCCCCCAGTTATTATTAGTAACTCCCCAGCCCAGGTATTTGTTATTCCC
ATCACAGGAAAGATAGTCCCAGCTCAGGAAGTAGTACTCGGAGTAGTTGGTTAGTTAGTCCCAGT
TCGGGAATAAATAGTTGTTTATCCCAGTTCGGGCAATAGTTGTTAAAGGGGTCAGGAAATAGTAC
TTAAAGGTATTCCCTGGTCCTGGTCACCAAATAGCAGGAAGAAATAGCAGGAAATAGTACTTGTA
GTTGTTGTCAGTCGATTGACTTGGTTCCTGTCCTTTAGTGTAGTGAAGGGGGCACTCGGCGTAGT
GCACCCGAACGCAACGTCCCCGCAATGTATTCGAAGGAAATACTC
Found at i:36469 original size:13 final size:13
Alignment explanation
Indices: 36451--36475 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36441 CCTGGTCACC
36451 AAATAGCAGGAAG
1 AAATAGCAGGAAG
36464 AAATAGCAGGAA
1 AAATAGCAGGAA
36476 ATAGTACTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.08, G:0.28, T:0.08
Consensus pattern (13 bp):
AAATAGCAGGAAG
Left flanking sequence: Indices 35951 -- 36450
AGGAATCAGGAAGTAGTAGTGAAAGTCTTACTTGTAGTTGGAGTTGCTAAAGGAAATAAATACAG
GAAATACAGGAGCTATATGTGTATTACTTACTTCCCAAGTCAAGGCAGGAAGTAGTAATTGGAGC
AGGAAGTAGTAATTGGATATTCCCTGAAGTAGTCCTTGAGTTACTACCAGGAGCTTTGAGTTACT
ACCATTTATTATTACCTACCTCTTTCTTAGCCTACCTATTTGTTAACTACCTCCCGCCTTAGAGC
CTCCCCCGGCCTTTGTAACCTACCTCCAGTACTTCCCCCAGTTATTATTAGTAACTCCCCAGCCC
AGGTATTTGTTATTCCCATCACAGGAAAGATAGTCCCAGCTCAGGAAGTAGTACTCGGAGTAGTT
GGTTAGTTAGTCCCAGTTCGGGAATAAATAGTTGTTTATCCCAGTTCGGGCAATAGTTGTTAAAG
GGGTCAGGAAATAGTACTTAAAGGTATTCCCTGGTCCTGGTCACC
Right flanking sequence: Indices 36476 -- 36975
ATAGTACTTGTAGTTGTTGTCAGTCGATTGACTTGGTTCCTGTCCTTTAGTGTAGTGAAGGGGGC
ACTCGGCGTAGTGCACCCGAACGCAACGTCCCCGCAATGTATTCGAAGGAAATACTCCTTGCTGC
TTAAGTCGGTTAGTTACCACCACCAGGCTAGCTTTTTTCTAAATTCTCCTTGTCTTAGAAGAAGT
GTAGTAAGTGGGCTACGTTTAGCACCCAGCTCATAAAGTAGTTGAGTAGTAGTTTTCTCTTTTGC
GCAGGCATGAACTCGTGAAGTCTGTCCGAAGAGTTTGTTCACAACGACTATTGGGTCAAACCTAA
ACCCCTTGTGTTCTTGTTGTTTTTCCTCCTTCCCGAAGGTTAGCTTTGTTTTTCTCCTTTGTTTT
TGGTTACTTATGAAGTGGAGTAAAGGTTGCTAGGTCTAGCAACCGAACGCAACGCTCATCAAGTT
GTTTAGTAGTTGTTCGTTGTCGAGTAACTTCTTTCCTCTCCTTTC
Found at i:40475 original size:12 final size:13
Alignment explanation
Indices: 40458--40490 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
40448 CGGTTTCGGG
40458 TGCTTATGA-AGT
1 TGCTTATGACAGT
40470 TGCTTAT-ACAGT
1 TGCTTATGACAGT
40482 TGCTTATGA
1 TGCTTATGA
40491 GGGTCCTGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 1 0.05
12 17 0.89
13 1 0.05
ACGTcount: A:0.24, C:0.12, G:0.21, T:0.42
Consensus pattern (13 bp):
TGCTTATGACAGT
Left flanking sequence: Indices 39958 -- 40457
TTCGTGACTCTTAGCCGCTTTGCTTCCTTTGTTCTTATTCAAGATGGCTTTACCGCGGGCTTTCC
ACGGTGCACCTAGTTATTCGAAACAGACTCTTTAATCCGATCCCTCGGCAATACTCCTCTGCTTG
TGCGCGTGTGCCTCTTATGGCGGCTGCTGTTCATGCTTACTTAACTTTAGACTTGACTTGAGGAG
CTACCAACTCCAATTCGCCCGGACACAAGCAAGGTCAATGTCAATTTAGGCTCAAGCAAGAGCTC
CTACTCGATATATCTTATCTTATAGAAAGAGAAAAGCACATGAAGGTACGGCGGACAGGCTAACC
AACCAGAGTGACTTACAAATCAAGGAAAGACGAGCTAAAGCCAAGATTACGACTACAAAGCACAG
TCAGCGGTTCAGGTTGGCGAGAGCAATCAATCGAAGACAAGTTCTAAGGCCAGTTCCAGTTCATC
AACCGAAAGCTCGGCTTGGGAGCTCGGGTTAGGGACGGTTTCGGG
Right flanking sequence: Indices 40491 -- 40990
GGGTCCTGATCGTTACCCAGACCCACCATTCTATCCACCACCATCACTAAGAGCAGAGGTCAAGG
TAGCACCCCTAGCAGCTTCACAGGTTTCATCTCCAGATCAAGACCGGGTTCCATGCCCAGTATCA
GTTCCAGTTGTTCCAGGTAACTTCAAACAGAATTTCAAAGAGAACCTCACTGTAGAGAGGGAAGG
AAAGGATAGACCCCCGGAAGCGTAAGAACGACTATTTTGGAGCCAGAGGTTGAGGTTCCATCGAC
GAGTGAGAAAAGGAACGAGAGACCTACGGCTCCGTGAGGATCAGGACGCGGCGTACGGTTGGCAA
TGGCAAGTCAGTCACATAGGCTTTTGTAACACCACGCGTCAGTACTAAACTGATTATGCCATCGA
TTCAAGACGGAAAGGAAAGCGTGGGAAATAGAAATTTAGTAAGTGTTGTTGTTGTTGTTGTTGTA
ACCGTTTGGGTTGGTCAACAAATCTTCTTTGTTCTTTGTAAATAT
Found at i:46724 original size:14 final size:14
Alignment explanation
Indices: 46705--46734 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
46695 CTTGGGAGGT
*
46705 AATACCCCAAAGAA
1 AATACCCCAAACAA
46719 AATACCCCAAACAA
1 AATACCCCAAACAA
46733 AA
1 AA
46735 CTTGGCGCTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.60, C:0.30, G:0.03, T:0.07
Consensus pattern (14 bp):
AATACCCCAAACAA
Left flanking sequence: Indices 46205 -- 46704
TGAGGGGAGATTGGCTTGGGATGAACACTCTAGTGCATGATATAGAGAGATGACCCGAAAGTACC
AGTAGTCGTTGGCAGGCAGCATGGGAAGGGGGCAATACATACCAAAAGGTTCGAAGAAGGAGCGC
GCATAAGAGTATATAACCAACCCACCCACCCTTCTTTATAACCTATTCACATTAGTGAAGCGGCT
GGATGCATAAGGGAAGTGGGTAAGGGGGAAGAAAATTACCCTAGAGTACTACCCGGCGGCTTCCC
TTGCCCGCTTTTTCTCCGATGAAGGCCTTGGAAGTGCTGTTGATTGTGCTCCTCAAAGAAAGAAG
GTCAGTATCCGCAGTGGAGTAAGAATCCCCGTGGAACAATGGTCTAGCCCCACGGACTAGTCGTT
CAGTAGTCTTACAGAGCGGTTACTCAATGGTCCAGTTGTTTAGCCCTACTAGCGGAAGCCTAGCC
GGATTCATTAATGCAATGGAACTTGAAGAACTGGCCTTGGGAGGT
Right flanking sequence: Indices 46735 -- 47234
CTTGGCGCTCTTTTGAGATAAGGAAAAATTAGTATTTACCTCCCCGGAAAGAATGTAACCCAAAA
GCCGGTTCTCTCTACTATAATAATAGTTGAACATTCCTAATTATCATTCGTTAGAGAGAGGGATA
TCACATCCAGGGTAAGGCAACGGGAGGACTCAATAAAATCTTTATCTCAATAAGAAACAAGTACA
TGTGTGTACGTACTTTATATAGCGATCCACAAAGGAGATCGTTCTTTTTAGAAAGCCCCGCTCTC
TAAGGGGCCCCTCTCTGATAAGGAAGTAAACGAAAGAATCTTACCAAAAAACTTCCCTTCAAAGG
TCAATATCAGCAAATGACGAAAGCCCGGGAAATGGGCCTTTTTCCATGACATGATTCGGTGTGTG
TATTCAATTACAGCGGATGCTTTGGTAGATGTCTTTTCCATTCTATAACGGGGATCCATTCTAGA
CTTGAGGCTGCTAATAGTTCTCCTTCTACTTCCGAAATCAAGGGA
Found at i:50415 original size:69 final size:69
Alignment explanation
Indices: 50262--50405 Score: 245
Period size: 69 Copynumber: 2.1 Consensus size: 69
50252 AATGATTTTT
*
50262 CAACGAAAAATCCCGGGAAAACGCAAGTTTTTTCTTTTTGAGTTGTGTTTTAGGGCAGAAATGTC
1 CAACGAAAAATCCCGGGAAAACGCAAGTTTTTTCTTTTTGAGTTCTGTTTTAGGGCAGAAATGTC
50327 ATTG
66 ATTG
*
50331 CAACGAAAAAACCCGGGAAAACGCAAGTTTTTTCTTTTTGAGTTCTCG-TTTAGGGCAGAAATGT
1 CAACGAAAAATCCCGGGAAAACGCAAGTTTTTTCTTTTTGAGTTCT-GTTTTAGGGCAGAAATGT
*
50395 CATTT
65 CATTG
50400 CAACGA
1 CAACGA
50406 TTTTTCCCGG
Statistics
Matches: 71, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
69 70 0.99
70 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.31
Consensus pattern (69 bp):
CAACGAAAAATCCCGGGAAAACGCAAGTTTTTTCTTTTTGAGTTCTGTTTTAGGGCAGAAATGTC
ATTG
Left flanking sequence: Indices 49762 -- 50261
TCGGAATCGGAACCTGACGGTACAACACTAAATATAAGAAGCTAGCTCTTCACTCCTGCCCTGCG
CGGTTGCTCGCTGCCTACCCGGCCTATCATGTAAAGCCGTAATTCAACTGTGACGGTACCACATG
GAGAGACACTTCCTCCGCATCACTTACAACTAATGACCACTGATCGTCGACAATTTCCACCACCA
ACCCCATCTCTTTAAATGAAACAAAGAAAACTACTCTAGCCCGGACAACTATGGCCAAGCCAAGA
TACAGATACGGGGGAACGGATGCGCACTCTTTCTTAGTATTCTTTCTCTCTTTCTTTATATATAG
AACAACTCTTTCCCCAGCATCGAATCGGTCTCTTCCTCTGTCAGCTCCGATTGCTAGGTGGAAGA
ATTTCTCAGCTGATCTACTGCTTTAATTCCTGTTTCAAAAATAGAGAATTTTTTATCTAATTGTA
TATCCTTAATCTCTTCAACTGAAACGAATCTGGGAAATGATTTTT
Right flanking sequence: Indices 50406 -- 50905
TTTTTCCCGGTAAAATGAAAATATATCTGTCTTGAAATTTAGGATGGCATGAAATTGAGGTGTCA
ACTTTTTCCATATATATGAAACGAGAAATCTCTTAAGAAAAGAGAAAATGTCGTAAGAAAAGAAA
GAATTTCTTAAGAGAAGCAACTCTATCATAAGAGAAGAAACTGAGACCCTGATACGATGTTTTGG
GGGGTCTCATAGTCAAGAAGAGTTTGATCCTGGCAAAGGAGTCGAAAGTGATAATCCGTCAAGTA
ACAATCTTACTTTTTCTGGGATGCATCAAAGAAACCCGAAGGAGAAAAGGAAAGCGTTCTTATCA
ACATTAGCGAAAACAGCCTTTCCTTAGATACGGTCTTGTCTGATAGGGGTGGCTCACTCAAGAAT
GGGACTAATGGGGTAGGGCGGCAAGCTCGGTAGGAAGTGTACCAGCGTCCGTACTGGAGCGGATC
ATTTCTTCAATGCGGCAGGCGCCAGTGCCTTGGCTAAATGCCTAC
Found at i:50515 original size:19 final size:19
Alignment explanation
Indices: 50488--50548 Score: 59
Period size: 20 Copynumber: 3.1 Consensus size: 19
50478 CCATATATAT
*
50488 GAAACGAGAAATCTCTTAA
1 GAAAAGAGAAATCTCTTAA
* *
50507 GAAAAGAGAAAATGTCGTAA
1 GAAAAGAG-AAATCTCTTAA
* *
50527 GAAAAGAAAGAATTTCTTAA
1 GAAAAGAGA-AATCTCTTAA
50547 GA
1 GA
50549 GAAGCAACTC
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
19 8 0.24
20 26 0.76
ACGTcount: A:0.52, C:0.08, G:0.20, T:0.20
Consensus pattern (19 bp):
GAAAAGAGAAATCTCTTAA
Left flanking sequence: Indices 49988 -- 50487
TACTCTAGCCCGGACAACTATGGCCAAGCCAAGATACAGATACGGGGGAACGGATGCGCACTCTT
TCTTAGTATTCTTTCTCTCTTTCTTTATATATAGAACAACTCTTTCCCCAGCATCGAATCGGTCT
CTTCCTCTGTCAGCTCCGATTGCTAGGTGGAAGAATTTCTCAGCTGATCTACTGCTTTAATTCCT
GTTTCAAAAATAGAGAATTTTTTATCTAATTGTATATCCTTAATCTCTTCAACTGAAACGAATCT
GGGAAATGATTTTTCAACGAAAAATCCCGGGAAAACGCAAGTTTTTTCTTTTTGAGTTGTGTTTT
AGGGCAGAAATGTCATTGCAACGAAAAAACCCGGGAAAACGCAAGTTTTTTCTTTTTGAGTTCTC
GTTTAGGGCAGAAATGTCATTTCAACGATTTTTCCCGGTAAAATGAAAATATATCTGTCTTGAAA
TTTAGGATGGCATGAAATTGAGGTGTCAACTTTTTCCATATATAT
Right flanking sequence: Indices 50549 -- 51048
GAAGCAACTCTATCATAAGAGAAGAAACTGAGACCCTGATACGATGTTTTGGGGGGTCTCATAGT
CAAGAAGAGTTTGATCCTGGCAAAGGAGTCGAAAGTGATAATCCGTCAAGTAACAATCTTACTTT
TTCTGGGATGCATCAAAGAAACCCGAAGGAGAAAAGGAAAGCGTTCTTATCAACATTAGCGAAAA
CAGCCTTTCCTTAGATACGGTCTTGTCTGATAGGGGTGGCTCACTCAAGAATGGGACTAATGGGG
TAGGGCGGCAAGCTCGGTAGGAAGTGTACCAGCGTCCGTACTGGAGCGGATCATTTCTTCAATGC
GGCAGGCGCCAGTGCCTTGGCTAAATGCCTACCTTCGGGAGAATTAGGATTCCATCGTAGTGGTT
CTCCCTTGTTGACCAAAGGAGTGCTTTAAAAGGTTAGAGTCAGAGAAGGAGTGGTTTCTTTGGCC
CCTGGATTGGGAGAGCTTTTCAATCTGGAGAAGAAAAGCCCTGTG
Found at i:50547 original size:20 final size:20
Alignment explanation
Indices: 50496--50548 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
50486 ATGAAACGAG
*
50496 AAATCTCTTAAGAAAAGAGA
1 AAATGTCTTAAGAAAAGAGA
*
50516 AAATGTCGTAAGAAAAGA-A
1 AAATGTCTTAAGAAAAGAGA
*
50535 AGAATTTCTTAAGA
1 A-AATGTCTTAAGA
50549 GAAGCAACTC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 2 0.07
20 26 0.93
ACGTcount: A:0.53, C:0.08, G:0.17, T:0.23
Consensus pattern (20 bp):
AAATGTCTTAAGAAAAGAGA
Left flanking sequence: Indices 49996 -- 50495
CCCGGACAACTATGGCCAAGCCAAGATACAGATACGGGGGAACGGATGCGCACTCTTTCTTAGTA
TTCTTTCTCTCTTTCTTTATATATAGAACAACTCTTTCCCCAGCATCGAATCGGTCTCTTCCTCT
GTCAGCTCCGATTGCTAGGTGGAAGAATTTCTCAGCTGATCTACTGCTTTAATTCCTGTTTCAAA
AATAGAGAATTTTTTATCTAATTGTATATCCTTAATCTCTTCAACTGAAACGAATCTGGGAAATG
ATTTTTCAACGAAAAATCCCGGGAAAACGCAAGTTTTTTCTTTTTGAGTTGTGTTTTAGGGCAGA
AATGTCATTGCAACGAAAAAACCCGGGAAAACGCAAGTTTTTTCTTTTTGAGTTCTCGTTTAGGG
CAGAAATGTCATTTCAACGATTTTTCCCGGTAAAATGAAAATATATCTGTCTTGAAATTTAGGAT
GGCATGAAATTGAGGTGTCAACTTTTTCCATATATATGAAACGAG
Right flanking sequence: Indices 50549 -- 51048
GAAGCAACTCTATCATAAGAGAAGAAACTGAGACCCTGATACGATGTTTTGGGGGGTCTCATAGT
CAAGAAGAGTTTGATCCTGGCAAAGGAGTCGAAAGTGATAATCCGTCAAGTAACAATCTTACTTT
TTCTGGGATGCATCAAAGAAACCCGAAGGAGAAAAGGAAAGCGTTCTTATCAACATTAGCGAAAA
CAGCCTTTCCTTAGATACGGTCTTGTCTGATAGGGGTGGCTCACTCAAGAATGGGACTAATGGGG
TAGGGCGGCAAGCTCGGTAGGAAGTGTACCAGCGTCCGTACTGGAGCGGATCATTTCTTCAATGC
GGCAGGCGCCAGTGCCTTGGCTAAATGCCTACCTTCGGGAGAATTAGGATTCCATCGTAGTGGTT
CTCCCTTGTTGACCAAAGGAGTGCTTTAAAAGGTTAGAGTCAGAGAAGGAGTGGTTTCTTTGGCC
CCTGGATTGGGAGAGCTTTTCAATCTGGAGAAGAAAAGCCCTGTG
Found at i:90141 original size:17 final size:18
Alignment explanation
Indices: 90119--90157 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
90109 AGAAAAGAAA
90119 AAAAGCAA-AAACAAAAC
1 AAAAGCAATAAACAAAAC
*
90136 AAAAGCAATAAACAAAAT
1 AAAAGCAATAAACAAAAC
90154 AAAA
1 AAAA
90158 AAAATATTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.77, C:0.13, G:0.05, T:0.05
Consensus pattern (18 bp):
AAAAGCAATAAACAAAAC
Left flanking sequence: Indices 89619 -- 90118
CGTGAACTGCGCTGTGCTCATCAAAGTGGAGGCTGCACCGCGCTGAATGAAAAAGAACCTTTTCC
CATGCTTTCCCTTGGTCAACAACCAAGCACAATAAATAAAAAGTAAGGGAGAACCGGCTCAACTT
ATACAAACCCTGGAATACCTGGAATCAAGGCTACCCGATCACGACCCTAGAAAACAGGATCTTAA
TCTCACTTAGAAACCACTTTCATGGTTTCGCAAGATTAGTCTTACTTAGAAACCAGCTTCAGGTG
GAGCTAGATCAAGGAAAGGGGAGGGGGGGGGTGTTTCATACCAAAGCAGTTTCCTCTGTACACCT
GATTAATCAGGCAGACAAAGAACCTAGTCAACAGGCTACGCCGGAGAACAACAACTCATGTCTCT
CCAGGATCACCTGAGTAACCAGGGAGGTAGAACCTCAACTACTATAGTAGTAGCACCTGAGGACT
CAACACACAACAATAATAGGACTATGGGCCGACCGAGAAAAGAAA
Right flanking sequence: Indices 90158 -- 90657
AAAATATTACTATCTTCACCGCCGCCGGACACCAAGCCGGACTTACAGCTGGTTAGATGAACAGT
CCATAGTGGATGCTCCGTTTGGAAGAGGTTCCTCTTTGCTTAGCTTGGTCGATTCTGGATAAGCC
TGGTCCATCCTCGTCTACTATTATACCTATTGCTTGTGGGCATGAATATGAGATGAGTGCCTAAC
TTCCTTTCCTTACTTATAAAATCTATATTGGTTGGTCTCGCTTCCCTTTCTATATTGTGTTCTAT
TTTCATCTTTGAATAGCCCCCTTTTAGTTCCATAGTTCAGGTAGCGAAGTTGATAAGGCAGAAAG
CAAAGCGAGGACAATGGGGTGATGCGAAAAAGAGGGCTTAGTTGGTTGAACGTCCCATCTTGAGG
GATGAGACGGAGAACCTGCATGCACCACTCATGGGCTGGTCGTAAAAGAGACTGTTTAACAGCAT
TCGGGATCGCAAAGATCCTTAGCTTACCTGCTCCTTCTACTTGAA
Found at i:95053 original size:21 final size:21
Alignment explanation
Indices: 95027--95068 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
95017 TCCACTTCTC
95027 TATATTAAGTAAATCATTGGT
1 TATATTAAGTAAATCATTGGT
95048 TATATTAAGTAAATCATTGGT
1 TATATTAAGTAAATCATTGGT
95069 GAAGAAGGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.38, C:0.05, G:0.14, T:0.43
Consensus pattern (21 bp):
TATATTAAGTAAATCATTGGT
Left flanking sequence: Indices 94527 -- 95026
TAGAGTAAAAACGCATTTCTATCCATTTCCGATCCCTTTGTTTTCTCGCTCTGCTCCCCCCCCCC
TCAAAAGAAAGAAAGACTTGTCGGAAAGAACATCACCTTGGTTTAACCAAGAAAGGCATGGGAGT
CTTTGGGCATTGTTTCACTTGAGTTACTTAAAAGAATCTTAAACAATCATTTTAGAATGACCGAA
GGATGCGAAAGCCAAAACTTATCGCGCGAAGAAGACTTCTCTCTTATACGGAGAGAAAAGGTAGG
TAGATACCATACCATATGACAGCACGGATCTAGATCTATATACTGATCGATCCTTATCTCTTCTA
TGTAAATACTGCTTTGGTGATTACATGACGCTAGCATTTAAAAAATCCTCAATAAAAGAAGATAC
AAATGTATCGATTCCATCTGTCTCTCTGTTCGATGATAGCTTTTCGAGTCTCATGAATTTGTAGA
TCGAGATGGAGTCATAGATAGAGATGCTAGCTAGCTCCACTTCTC
Right flanking sequence: Indices 95069 -- 95568
GAAGAAGGAAGGCAAGCTTATCAGAAGTCATTCATAGGTGCTCCACTGCTATATCATAAGAAAAG
GTCGATACCATCTCTAACTAAAGGAACTGATCGATATACGGAGAGATCTTCCACTGATTAATATT
ACGTGAATACAAGGTAGAGAAGGAAGGCAAGCTAGTGCGATATAGAGATGGATTTACTCAGGCAA
GCTTATATAGAATACGTAATTCATTGGTCGATAGATATGGATTGAGTGCCACCTCACTACGTGGC
CTTGCTTTTTTATTTTAGATCACCTATTACATGACAAGGAAAGCTATCATTGAGTGAAAGCCAAA
ACGGATCTCTTTTCACGGTCGATACCCTATCTCAATACTGGACAGGTCATGGGCGATCGATCTCA
GCTAGTCTTCTTTCTTGAGTCAGGTCATGGGGTACGGAAACGTCCTCTTATCAGGAGGACGGAAC
AAAATATGAAATAGGCGGGCCCCTGTATTTCGAATTTAAAGAAGA
Found at i:99922 original size:14 final size:14
Alignment explanation
Indices: 99903--99932 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
99893 CTTGGGAGGT
*
99903 AATACCCCAAAGAA
1 AATACCCCAAACAA
99917 AATACCCCAAACAA
1 AATACCCCAAACAA
99931 AA
1 AA
99933 CTTGGCGCTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.60, C:0.30, G:0.03, T:0.07
Consensus pattern (14 bp):
AATACCCCAAACAA
Left flanking sequence: Indices 99403 -- 99902
TGAGGGGAGATTGGCTTGGGATGAACACTCTAGTGCATGATATAGAGAGATGACCCGAAAGTACC
AGTAGTCGTTGGCAGGCAGCATGGGAAGGGGGCAATACATACCAAAAGGTTCGAAGAAGGAGCGC
GCATAAGAGTATATAACCAACCCACCCACCCTTCTTTATAACCTATTCACATTAGTGAAGCGGCT
GGATGCATAAGGGAAGTGGGTAAGGGGGAAGAAAATTACCCTAGAGTACTACCCGGCGGCTTCCC
TTGCCCGCTTTTTCTCCGATGAAGGCCTTGGAAGTGCTGTTGATTGTGCTCCTCAAAGAAAGAAG
GTCAGTATCCGCAGTGGAGTAAGAATCCCCGTGGAACAATGGTCTAGCCCCACGGACTAGTCGTT
CAGTAGTCTTACAGAGCGGTTACTCAATGGTCCAGTTGTTTAGCCCTACTAGCGGAAGCCTAGCC
GGATTCATTAATGCAATGGAACTTGAAGAACTGGCCTTGGGAGGT
Right flanking sequence: Indices 99933 -- 100432
CTTGGCGCTCTTTTGAGATAAGGAAAAATTAGTATTTACCTCCCCGGAAAGAATGTAACCCAAAA
GCCGGTTCTCTCTACTATAATAATAGTTGAACATTCCTAATTATCATTCGTTAGAGAGAGGGATA
TCACATCCAGGGTAAGGCAACGGGAGGACTCAATAAAATCTTTATCTCAATAAGAAACAAGTACA
TGTGTGTACGTACTTTATATAGCGATCCACAAAGGAGATCGTTCTTTTTAGAAAGCCCCGCTCTC
TAAGGGGCCCCTCTCTGATAAGGAAGTAAACGAAAGAATCTTACCAAAAAACTTCCCTTCAAAGG
TCAATATCAGCAAATGACGAAAGCCCGGGAAATGGGCCTTTTTCCATGACATGATTCGGTGTGTG
TATTCAATTACAGCGGATGCTTTGGTAGATGTCTTTTCCATTCTATAACGGGGATCCATTCTAGA
CTTGAGGCTGCTAATAGTTCTCCTTCTACTTCCGAAATCAAGGGA
Found at i:103613 original size:69 final size:69
Alignment explanation
Indices: 103460--103603 Score: 245
Period size: 69 Copynumber: 2.1 Consensus size: 69
103450 AATGATTTTT
*
103460 CAACGAAAAATCCCGGGAAAACGCAAGTTTTTTCTTTTTGAGTTGTGTTTTAGGGCAGAAATGTC
1 CAACGAAAAATCCCGGGAAAACGCAAGTTTTTTCTTTTTGAGTTCTGTTTTAGGGCAGAAATGTC
103525 ATTG
66 ATTG
*
103529 CAACGAAAAAACCCGGGAAAACGCAAGTTTTTTCTTTTTGAGTTCTCG-TTTAGGGCAGAAATGT
1 CAACGAAAAATCCCGGGAAAACGCAAGTTTTTTCTTTTTGAGTTCT-GTTTTAGGGCAGAAATGT
*
103593 CATTT
65 CATTG
103598 CAACGA
1 CAACGA
103604 TTTTTCCCGG
Statistics
Matches: 71, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
69 70 0.99
70 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.31
Consensus pattern (69 bp):
CAACGAAAAATCCCGGGAAAACGCAAGTTTTTTCTTTTTGAGTTCTGTTTTAGGGCAGAAATGTC
ATTG
Left flanking sequence: Indices 102960 -- 103459
TCGGAATCGGAACCTGACGGTACAACACTAAATATAAGAAGCTAGCTCTTCACTCCTGCCCTGCG
CGGTTGCTCGCTGCCTACCCGGCCTATCATGTAAAGCCGTAATTCAACTGTGACGGTACCACATG
GAGAGACACTTCCTCCGCATCACTTACAACTAATGACCACTGATCGTCGACAATTTCCACCACCA
ACCCCATCTCTTTAAATGAAACAAAGAAAACTACTCTAGCCCGGACAACTATGGCCAAGCCAAGA
TACAGATACGGGGGAACGGATGCGCACTCTTTCTTAGTATTCTTTCTCTCTTTCTTTATATATAG
AACAACTCTTTCCCCAGCATCGAATCGGTCTCTTCCTCTGTCAGCTCCGATTGCTAGGTGGAAGA
ATTTCTCAGCTGATCTACTGCTTTAATTCCTGTTTCAAAAATAGAGAATTTTTTATCTAATTGTA
TATCCTTAATCTCTTCAACTGAAACGAATCTGGGAAATGATTTTT
Right flanking sequence: Indices 103604 -- 104103
TTTTTCCCGGTAAAATGAAAATATATCTGTCTTGAAATTTAGGATGGCATGAAATTGAGGTGTCA
ACTTTTTCCATATATATGAAACGAGAAATCTCTTAAGAAAAGAGAAAATGTCGTAAGAAAAGAAA
GAATTTCTTAAGAGAAGCAACTCTATCATAAGAGAAGAAACTGAGACCCTGATACGATGTTTTGG
GGGGTCTCATAGTCAAGAAGAGTTTGATCCTGGCAAAGGAGTCGAAAGTGATAATCCGTCAAGTA
ACAATCTTACTTTTTCTGGGATGCATCAAAGAAACCCGAAGGAGAAAAGGAAAGCGTTCTTATCA
ACATTAGCGAAAACAGCCTTTCCTTAGATACGGTCTTGTCTGATAGGGGTGGCTCACTCAAGAAT
GGGACTAATGGGGTAGGGCGGCAAGCTCGGTAGGAAGTGTACCAGCGTCCGTACTGGAGCGGATC
ATTTCTTCAATGCGGCAGGCGCCAGTGCCTTGGCTAAATGCCTAC
Found at i:103713 original size:19 final size:19
Alignment explanation
Indices: 103686--103746 Score: 59
Period size: 20 Copynumber: 3.1 Consensus size: 19
103676 CCATATATAT
*
103686 GAAACGAGAAATCTCTTAA
1 GAAAAGAGAAATCTCTTAA
* *
103705 GAAAAGAGAAAATGTCGTAA
1 GAAAAGAG-AAATCTCTTAA
* *
103725 GAAAAGAAAGAATTTCTTAA
1 GAAAAGAGA-AATCTCTTAA
103745 GA
1 GA
103747 GAAGCAACTC
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
19 8 0.24
20 26 0.76
ACGTcount: A:0.52, C:0.08, G:0.20, T:0.20
Consensus pattern (19 bp):
GAAAAGAGAAATCTCTTAA
Left flanking sequence: Indices 103186 -- 103685
TACTCTAGCCCGGACAACTATGGCCAAGCCAAGATACAGATACGGGGGAACGGATGCGCACTCTT
TCTTAGTATTCTTTCTCTCTTTCTTTATATATAGAACAACTCTTTCCCCAGCATCGAATCGGTCT
CTTCCTCTGTCAGCTCCGATTGCTAGGTGGAAGAATTTCTCAGCTGATCTACTGCTTTAATTCCT
GTTTCAAAAATAGAGAATTTTTTATCTAATTGTATATCCTTAATCTCTTCAACTGAAACGAATCT
GGGAAATGATTTTTCAACGAAAAATCCCGGGAAAACGCAAGTTTTTTCTTTTTGAGTTGTGTTTT
AGGGCAGAAATGTCATTGCAACGAAAAAACCCGGGAAAACGCAAGTTTTTTCTTTTTGAGTTCTC
GTTTAGGGCAGAAATGTCATTTCAACGATTTTTCCCGGTAAAATGAAAATATATCTGTCTTGAAA
TTTAGGATGGCATGAAATTGAGGTGTCAACTTTTTCCATATATAT
Right flanking sequence: Indices 103747 -- 104246
GAAGCAACTCTATCATAAGAGAAGAAACTGAGACCCTGATACGATGTTTTGGGGGGTCTCATAGT
CAAGAAGAGTTTGATCCTGGCAAAGGAGTCGAAAGTGATAATCCGTCAAGTAACAATCTTACTTT
TTCTGGGATGCATCAAAGAAACCCGAAGGAGAAAAGGAAAGCGTTCTTATCAACATTAGCGAAAA
CAGCCTTTCCTTAGATACGGTCTTGTCTGATAGGGGTGGCTCACTCAAGAATGGGACTAATGGGG
TAGGGCGGCAAGCTCGGTAGGAAGTGTACCAGCGTCCGTACTGGAGCGGATCATTTCTTCAATGC
GGCAGGCGCCAGTGCCTTGGCTAAATGCCTACCTTCGGGAGAATTAGGATTCCATCGTAGTGGTT
CTCCCTTGTTGACCAAAGGAGTGCTTTAAAAGGTTAGAGTCAGAGAAGGAGTGGTTTACTTGGTT
ATAGGTTTCTAGTATAAAGAGAGCATGAGTCAGCCTATCAGTAGC
Found at i:103745 original size:20 final size:20
Alignment explanation
Indices: 103694--103746 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
103684 ATGAAACGAG
*
103694 AAATCTCTTAAGAAAAGAGA
1 AAATGTCTTAAGAAAAGAGA
*
103714 AAATGTCGTAAGAAAAGA-A
1 AAATGTCTTAAGAAAAGAGA
*
103733 AGAATTTCTTAAGA
1 A-AATGTCTTAAGA
103747 GAAGCAACTC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 2 0.07
20 26 0.93
ACGTcount: A:0.53, C:0.08, G:0.17, T:0.23
Consensus pattern (20 bp):
AAATGTCTTAAGAAAAGAGA
Left flanking sequence: Indices 103194 -- 103693
CCCGGACAACTATGGCCAAGCCAAGATACAGATACGGGGGAACGGATGCGCACTCTTTCTTAGTA
TTCTTTCTCTCTTTCTTTATATATAGAACAACTCTTTCCCCAGCATCGAATCGGTCTCTTCCTCT
GTCAGCTCCGATTGCTAGGTGGAAGAATTTCTCAGCTGATCTACTGCTTTAATTCCTGTTTCAAA
AATAGAGAATTTTTTATCTAATTGTATATCCTTAATCTCTTCAACTGAAACGAATCTGGGAAATG
ATTTTTCAACGAAAAATCCCGGGAAAACGCAAGTTTTTTCTTTTTGAGTTGTGTTTTAGGGCAGA
AATGTCATTGCAACGAAAAAACCCGGGAAAACGCAAGTTTTTTCTTTTTGAGTTCTCGTTTAGGG
CAGAAATGTCATTTCAACGATTTTTCCCGGTAAAATGAAAATATATCTGTCTTGAAATTTAGGAT
GGCATGAAATTGAGGTGTCAACTTTTTCCATATATATGAAACGAG
Right flanking sequence: Indices 103747 -- 104246
GAAGCAACTCTATCATAAGAGAAGAAACTGAGACCCTGATACGATGTTTTGGGGGGTCTCATAGT
CAAGAAGAGTTTGATCCTGGCAAAGGAGTCGAAAGTGATAATCCGTCAAGTAACAATCTTACTTT
TTCTGGGATGCATCAAAGAAACCCGAAGGAGAAAAGGAAAGCGTTCTTATCAACATTAGCGAAAA
CAGCCTTTCCTTAGATACGGTCTTGTCTGATAGGGGTGGCTCACTCAAGAATGGGACTAATGGGG
TAGGGCGGCAAGCTCGGTAGGAAGTGTACCAGCGTCCGTACTGGAGCGGATCATTTCTTCAATGC
GGCAGGCGCCAGTGCCTTGGCTAAATGCCTACCTTCGGGAGAATTAGGATTCCATCGTAGTGGTT
CTCCCTTGTTGACCAAAGGAGTGCTTTAAAAGGTTAGAGTCAGAGAAGGAGTGGTTTACTTGGTT
ATAGGTTTCTAGTATAAAGAGAGCATGAGTCAGCCTATCAGTAGC
Found at i:105628 original size:22 final size:21
Alignment explanation
Indices: 105587--105643 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 21
105577 TAACCTTCAA
105587 TCATAGACTCA-AAACTAAGAAC
1 TCATAGACTCAGAAAC-AAG-AC
105609 TCATAGACTCAGGAAA-AAGAC
1 TCATAGACTCA-GAAACAAGAC
*
105630 TCTTAGACTCAGAA
1 TCATAGACTCAGAA
105644 CTCTAAAAAG
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
20 3 0.09
21 12 0.38
22 14 0.44
24 3 0.09
ACGTcount: A:0.46, C:0.21, G:0.14, T:0.19
Consensus pattern (21 bp):
TCATAGACTCAGAAACAAGAC
Left flanking sequence: Indices 105087 -- 105586
TCAGCTGCACATGAATATGACTCTATTACTTTCTTCCTTTCGTACTCTTCTTACGCCGGAGGCCT
TTTAACAGAAGAAGAAAGTCTTTCTATCGAATGCCCTCTGCAGATGAATTGAATCAATAGTTAAC
CCACACACAGAATAGAATAAGAGGGTCAAGCCACTCGAGCGGAAGAGAAGGCAAGGCGGTTTGTC
CTTACTTTTAACAAACAAGCAAGAAAGAAGCCGGCAGTTGCTATCATGTTACGACCGGGGGAAAC
CCCTAAGAAAGAAGAAAATCTATAAGAAGGAGGACAGGATAACTTCATGAAGACTGAACTTACAG
CCAATTCTGAAACTGGGATTTCCACTAAGGGAAACTGCAATTCGGACTTATGCTTCTTTTTCTTT
CTATTTCTCTTAGGCCGGCCAAGTGAGAGGAGAGACTTCTGTCCCCTTTTTTCTTTTTCTTTCTT
ATGTCCGAGTTCCTTCATGAAACTTAGCCTTCGGATAACCTTCAA
Right flanking sequence: Indices 105644 -- 106143
CTCTAAAAAGAATAACACCCGGAAAACCATAGAATCTATGAATGAAGACTCCTCTGAAAGCCAAT
GCTTCCCTCTTATAGGCCAATAAAGGATAAAACCTCTCTCACGCCTGCCTTTCTCGTAGTTGCGC
ACGTTTTTTCTTTTTTTCGTCGAGATTGGGTTGGTGTTCCGTGTACCGGGTACAAGATCGAAAAT
CATGCATTCCTACTGCGATGCCCAAAAAAGGAACGAGGAGAAGAATCTTGTAGTATTCGATTTTG
GATTCTTGCGCCTATTTTGGATTTACGGCGTCAGAGTCGAACCTCCTTTCCTTATAAGGTATCCC
CCCCAGGGAAGGAAAGGCAGAATCGACGACTGATAAGAAAAAGAAAAAGAAAAAAGCGTGAGGGT
TTAAGTTTAAGGAAAGAAATGCGCGACCCATTGGTTCGTCTACTTGCTGATAAGGAGAATTTCCT
TATCATTCTACTTTTTCTTCTTTTCTGTTATGTATTGCGTCTCTT
Found at i:146307 original size:22 final size:22
Alignment explanation
Indices: 146280--146330 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
146270 TCGCAAGACA
146280 AAGAAGCTGCAATCACAACATG
1 AAGAAGCTGCAATCACAACATG
* *
146302 AAGAAGTTGCGATCACAACATG
1 AAGAAGCTGCAATCACAACATG
*
146324 AACAAGC
1 AAGAAGC
146331 AAAAAAGAGG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.45, C:0.22, G:0.20, T:0.14
Consensus pattern (22 bp):
AAGAAGCTGCAATCACAACATG
Left flanking sequence: Indices 145780 -- 146279
ACAAGTTCAATGAATGGAGATGAAGAGAAGAGAAATCTACCTAGCGCATCCGGTCGATATTACAT
AGAATGCTATAAACCTTAAAAGAGAGATGCCAAAGGTAGTTTACTTGCTTAGTGTGAAACGCTAA
GGATGGGCGACTAACTTAACTGAAAGTGAAAGAAGTAGTGGGAGGGTTAGTGAATGAAATTTCCT
TCAAACCTGTCAGTGTGAAATCAAGCTTCAGAGTCAACAGAGTCAAAGGGTGAAACGAAATCTCT
TTCATACAAATCTTATCTTATGCTTGCCCGAGGGGATAGTAACTTCTTAGAAAAGCAAGGACGGG
ACTAGTTTTCTAGCGGAATTCGAAGATTAGTCTTTCTCGCCTTTCTGCTACCTCAGAAGAGGAAA
TTCCATGTTCAAAATCAAGATGAAGCAGTCCAATCCTGAATGAGATCTTTTGGGCTCGACTCGAG
AGGATCAAACAGAAGACAGCGCCATGTTAATGCGATCGCAAGACA
Right flanking sequence: Indices 146331 -- 146830
AAAAAAGAGGGTCTTTCATCACTTTTTTTTCTCATATTTCGCCGGACTAGTCAAATTCAAGTGGA
GATTGAACGCTAGAAGGCGCAGATAGGAACTGCGAGCACGGATCAGAAGGCGAGCGAGCTGTGTT
CACTTAAAGCTTCACTTCAGGTTTTGTAGTGGGAAATGCTCAAAGGAAAGAGATTTGAAAACGTA
GCGCAGTCTGTAATGAGAGCGGGATGGGGACGGAAAGGGTTCCCCCTCTCCTGTAGTAGCGAACC
TGTCAATTTGGAATTTTAGAAACCGTAGGCCCAACGACAAGTCCTCAGCAAACATAAAGACGTGA
ACGACCAACGGTAAGAGCAAGTGAACTAGTCAAGAACTCAAATCCGTAATGCGCTTAAGGCATTG
ATAATCCAAGTCTTAAGTGCGACCCACTCAATGGATCATCTCGGGCAATGGTCTAATATATGGTT
CTCATTTTCGAACAAAAAAGACCTTATAAAGAGCTCACTTCAGCA
Found at i:153171 original size:21 final size:21
Alignment explanation
Indices: 153145--153201 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 21
153135 CTAAGCAACT
153145 ATTACTACTTTCCAGTAACCA
1 ATTACTACTTTCCAGTAACCA
153166 ATTACTACTTCCCGTTCCAGTAACCA
1 ATTACTAC-T----TTCCAGTAACCA
153192 ATTACTACTT
1 ATTACTACTT
153202 CGGGATTACT
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
21 9 0.29
22 1 0.03
25 1 0.03
26 20 0.65
ACGTcount: A:0.30, C:0.30, G:0.05, T:0.35
Consensus pattern (21 bp):
ATTACTACTTTCCAGTAACCA
Left flanking sequence: Indices 152645 -- 153144
GCTTGTTGAAGAGGGAAAGATCACTCCTAAATGCTGCCGTGATCTTATATACGATACCACCAGAC
GCACCTTGGTACTTCCATCCGAATCAAGGCTAGTGGAGCGAAGAGAGCCAAAAAAGGCCCCCGCG
CGAGCCTTATTGAAAATTGAAAAAGCCCCTTAGTATAGATAGGGGAGGGGGGCGTTAGCGCTTTA
GTTTGATTGCAGGGGCGCGTTAGCGCTTTACTAATAACATAGAAAGGGGCAAGCCAAAACCGTAA
GACCTATCCCTATACACCTACGACCTATTGAACACGCTTTCTTTCTAAAGAGAATCAAATAAAGC
TCAAAACTGCTCCTCTACCGGAACTGCTTTCACTACTACTTCCTGAGCCCCGGGACTAACTCACC
AACTACTCCGAGTACTACTTCCTGTACTTTAGCAAGTAATCCCAATACCTTACTTAGCTACTCGA
ACTACTAAACTACCTTTTCTTTTCCTGGTCCTGGCCTAAGCAACT
Right flanking sequence: Indices 153202 -- 153701
CGGGATTACTACTTCCTACTTCCCGATCTGGGACTACTGTCACAACTACCTCTCCTACTTACCGA
TCTTCCCGATTACTACTTCCTACTTCGGGATTACTACTTTGGGATTACTACTTCCTTGTTTACCT
ACCTTTTTTAACAACTACTTTTTCCTCAACTACTACTACTTCCTGTTTCCTGTACTTTAGCAACT
ACTTTGACAACTTTCCCAAGGAGTAACAGTAACTCAACTACTTTCCTATCTTTAACTGCTATGTG
ACCTACTGACTGTTAGTAGCAAGGAGTTATTTCCTTTCTCCTTAGAGACTGTGTCTAAGCTTCAT
TCCATATACCCAATACCAAATGTTTCGCTCAAAAGGACATCTTGTGAACAGAAAGATGTGAGTTG
ACTCACACGGGAAATCCGCTTTGAAAGCGCTTTTTCGGCTGCAGGAGTGTCATATTTCGAGGATC
ATTTACATATTTAATGATGAAACTCATTCAGCAGTGGAAGACTTC
Found at i:153303 original size:14 final size:14
Alignment explanation
Indices: 153286--153320 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
153276 TTACTACTTC
153286 CTACTTCGGGATTA
1 CTACTTCGGGATTA
*
153300 CTACTTTGGGATTA
1 CTACTTCGGGATTA
153314 CTACTTC
1 CTACTTC
153321 CTTGTTTACC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.20, C:0.23, G:0.17, T:0.40
Consensus pattern (14 bp):
CTACTTCGGGATTA
Left flanking sequence: Indices 152786 -- 153285
GAAAATTGAAAAAGCCCCTTAGTATAGATAGGGGAGGGGGGCGTTAGCGCTTTAGTTTGATTGCA
GGGGCGCGTTAGCGCTTTACTAATAACATAGAAAGGGGCAAGCCAAAACCGTAAGACCTATCCCT
ATACACCTACGACCTATTGAACACGCTTTCTTTCTAAAGAGAATCAAATAAAGCTCAAAACTGCT
CCTCTACCGGAACTGCTTTCACTACTACTTCCTGAGCCCCGGGACTAACTCACCAACTACTCCGA
GTACTACTTCCTGTACTTTAGCAAGTAATCCCAATACCTTACTTAGCTACTCGAACTACTAAACT
ACCTTTTCTTTTCCTGGTCCTGGCCTAAGCAACTATTACTACTTTCCAGTAACCAATTACTACTT
CCCGTTCCAGTAACCAATTACTACTTCGGGATTACTACTTCCTACTTCCCGATCTGGGACTACTG
TCACAACTACCTCTCCTACTTACCGATCTTCCCGATTACTACTTC
Right flanking sequence: Indices 153321 -- 153820
CTTGTTTACCTACCTTTTTTAACAACTACTTTTTCCTCAACTACTACTACTTCCTGTTTCCTGTA
CTTTAGCAACTACTTTGACAACTTTCCCAAGGAGTAACAGTAACTCAACTACTTTCCTATCTTTA
ACTGCTATGTGACCTACTGACTGTTAGTAGCAAGGAGTTATTTCCTTTCTCCTTAGAGACTGTGT
CTAAGCTTCATTCCATATACCCAATACCAAATGTTTCGCTCAAAAGGACATCTTGTGAACAGAAA
GATGTGAGTTGACTCACACGGGAAATCCGCTTTGAAAGCGCTTTTTCGGCTGCAGGAGTGTCATA
TTTCGAGGATCATTTACATATTTAATGATGAAACTCATTCAGCAGTGGAAGACTTCCACGACATG
TATTGGTCAGTCATTCCAGACATTCATTCGTAAATACATTGGATGTCCGGGCATCAAGAACGAAG
AAGGAAGGCGAGGCCAAGGAACATCCCGAAAGGAGAAAGGAATAC
Found at i:158228 original size:15 final size:15
Alignment explanation
Indices: 158208--158238 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
158198 AAAGAGAGAT
158208 TTAGATAGATACAAA
1 TTAGATAGATACAAA
158223 TTAGATAGATACAAA
1 TTAGATAGATACAAA
158238 T
1 T
158239 AAGTGCGAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.52, C:0.06, G:0.13, T:0.29
Consensus pattern (15 bp):
TTAGATAGATACAAA
Left flanking sequence: Indices 157708 -- 158207
CTCTGTAGTAGCATTCTCTTGTGAGTAAGTAACTCTCTGGAAAGCTCCTGCCTTTGGACCAGAAG
ATGAAAGCTAGGTTTTTCTTCCGGAAGGAAAAAATAAGTTGAAGTGGTGTAAGATTAGGATAGGA
GGTCTTTTCGCTCCTACCTTTCCGAAGTGAAGGTTGCCAAGGCAAAACTTAAGAAAGGAAACTAT
TGCCAAGAGGGACCGGGGAACGCTCTGCCCCTTCACCTACTAAAGGATCCGTTACCAGAGTTCTG
CCCTTCTAAGGGCCCTCTGAGTCAGAGCCGGGGCGATCCAGTTACCCGGAGTTCAAATTCGATCC
ATTAGGTTCTTCGATTTGTTCAGAAAAGAAACGAGAGACAAGAAAACATCTTTGATTACGATTAA
AAGGAACAATCTCAAATAGACCAAGATCCAATTTCGGGTCATTTCTTGGTGAAAATGATCTGCCA
TAATCTCTTCGATCCCTTCATTGATGTGCCAGAATAAAGAGAGAT
Right flanking sequence: Indices 158239 -- 158738
AAGTGCGAATTCTGACATCACCACAGCCCACTTGGTTCTCTCGCTCCTTGCTCGCGGAGCGGCAT
ACCGGAAAAAAAAGAAAGAAGAAAATCCAGAGACAAAAGAAATGGAAGACCCAATAGCATTTCGA
AATGATGTCCCTAGAGAAAAGAACATAATCCCAGCTGAGGAAAAAGCATTCGCAGGAAAAACAGG
AATTAGCTCAAGCGAAAGAAGCCCTCATTCCCGCTCTTCTTTCCCCCCATCGCTGGGGGCCTCCT
CCTTTTCATTTTAATAAGGATTACACCACTGGAAATAACCCCCCCACCAAATCAGCACACCACAT
AAAAATCCAAGAAACCGATAAAAAAGAACTATGTAAAAATTCCATAACCATATCATAATCATACG
TCTGTAATCAAAAATTTGAAAGAAATTGGAGAATTATTTGAAATTCCATACTTTGAAGCCCCAAC
TCACTTAGATTTTTTAATATAGTGAGAAGTTGCTCCAAAGATTCA
Found at i:168227 original size:20 final size:20
Alignment explanation
Indices: 168204--168256 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
168194 GAGTTGCTTC
168204 TCTTAAGAAATTCTT-TCTTT
1 TCTTAAGAAATT-TTCTCTTT
* *
168224 TCTTACGACATTTTCTCTTT
1 TCTTAAGAAATTTTCTCTTT
*
168244 TCTTAAGAGATTT
1 TCTTAAGAAATTT
168257 CTCGTTTCAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 2 0.07
20 26 0.93
ACGTcount: A:0.23, C:0.17, G:0.08, T:0.53
Consensus pattern (20 bp):
TCTTAAGAAATTTTCTCTTT
Left flanking sequence: Indices 167704 -- 168203
GCTACTGATAGGCTGACTCATGCTCTCTTTATACTAGAAACCTATAACCAAGTAAACCACTCCTT
CTCTGACTCTAACCTTTTAAAGCACTCCTTTGGTCAACAAGGGAGAACCACTACGATGGAATCCT
AATTCTCCCGAAGGTAGGCATTTAGCCAAGGCACTGGCGCCTGCCGCATTGAAGAAATGATCCGC
TCCAGTACGGACGCTGGTACACTTCCTACCGAGCTTGCCGCCCTACCCCATTAGTCCCATTCTTG
AGTGAGCCACCCCTATCAGACAAGACCGTATCTAAGGAAAGGCTGTTTTCGCTAATGTTGATAAG
AACGCTTTCCTTTTCTCCTTCGGGTTTCTTTGATGCATCCCAGAAAAAGTAAGATTGTTACTTGA
CGGATTATCACTTTCGACTCCTTTGCCAGGATCAAACTCTTCTTGACTATGAGACCCCCCAAAAC
ATCGTATCAGGGTCTCAGTTTCTTCTCTTATGATAGAGTTGCTTC
Right flanking sequence: Indices 168257 -- 168756
CTCGTTTCATATATATGGAAAAAGTTGACACCTCAATTTCATGCCATCCTAAATTTCAAGACAGA
TATATTTTCATTTTACCGGGAAAAATCGTTGAAATGACATTTCTGCCCTAAACGAGAACTCAAAA
AGAAAAAACTTGCGTTTTCCCGGGTTTTTTCGTTGCAATGACATTTCTGCCCTAAAACACAACTC
AAAAAGAAAAAACTTGCGTTTTCCCGGGATTTTTCGTTGAAAAATCATTTCCCAGATTCGTTTCA
GTTGAAGAGATTAAGGATATACAATTAGATAAAAAATTCTCTATTTTTGAAACAGGAATTAAAGC
AGTAGATCAGCTGAGAAATTCTTCCACCTAGCAATCGGAGCTGACAGAGGAAGAGACCGATTCGA
TGCTGGGGAAAGAGTTGTTCTATATATAAAGAAAGAGAGAAAGAATACTAAGAAAGAGTGCGCAT
CCGTTCCCCCGTATCTGTATCTTGGCTTGGCCATAGTTGTCCGGG
Found at i:168259 original size:19 final size:19
Alignment explanation
Indices: 168204--168264 Score: 59
Period size: 20 Copynumber: 3.1 Consensus size: 19
168194 GAGTTGCTTC
*
168204 TCTTAAGAAATTCTTTCTTT
1 TCTTAAGAAATT-TCTCTTT
* *
168224 TCTTACGACATTTTCTCTTT
1 TCTTAAGA-AATTTCTCTTT
* *
168244 TCTTAAGAGATTTCTCGTT
1 TCTTAAGAAATTTCTCTTT
168263 TC
1 TC
168265 ATATATATGG
Statistics
Matches: 33, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
19 10 0.30
20 20 0.61
21 3 0.09
ACGTcount: A:0.20, C:0.20, G:0.08, T:0.52
Consensus pattern (19 bp):
TCTTAAGAAATTTCTCTTT
Left flanking sequence: Indices 167704 -- 168203
GCTACTGATAGGCTGACTCATGCTCTCTTTATACTAGAAACCTATAACCAAGTAAACCACTCCTT
CTCTGACTCTAACCTTTTAAAGCACTCCTTTGGTCAACAAGGGAGAACCACTACGATGGAATCCT
AATTCTCCCGAAGGTAGGCATTTAGCCAAGGCACTGGCGCCTGCCGCATTGAAGAAATGATCCGC
TCCAGTACGGACGCTGGTACACTTCCTACCGAGCTTGCCGCCCTACCCCATTAGTCCCATTCTTG
AGTGAGCCACCCCTATCAGACAAGACCGTATCTAAGGAAAGGCTGTTTTCGCTAATGTTGATAAG
AACGCTTTCCTTTTCTCCTTCGGGTTTCTTTGATGCATCCCAGAAAAAGTAAGATTGTTACTTGA
CGGATTATCACTTTCGACTCCTTTGCCAGGATCAAACTCTTCTTGACTATGAGACCCCCCAAAAC
ATCGTATCAGGGTCTCAGTTTCTTCTCTTATGATAGAGTTGCTTC
Right flanking sequence: Indices 168265 -- 168764
ATATATATGGAAAAAGTTGACACCTCAATTTCATGCCATCCTAAATTTCAAGACAGATATATTTT
CATTTTACCGGGAAAAATCGTTGAAATGACATTTCTGCCCTAAACGAGAACTCAAAAAGAAAAAA
CTTGCGTTTTCCCGGGTTTTTTCGTTGCAATGACATTTCTGCCCTAAAACACAACTCAAAAAGAA
AAAACTTGCGTTTTCCCGGGATTTTTCGTTGAAAAATCATTTCCCAGATTCGTTTCAGTTGAAGA
GATTAAGGATATACAATTAGATAAAAAATTCTCTATTTTTGAAACAGGAATTAAAGCAGTAGATC
AGCTGAGAAATTCTTCCACCTAGCAATCGGAGCTGACAGAGGAAGAGACCGATTCGATGCTGGGG
AAAGAGTTGTTCTATATATAAAGAAAGAGAGAAAGAATACTAAGAAAGAGTGCGCATCCGTTCCC
CCGTATCTGTATCTTGGCTTGGCCATAGTTGTCCGGGCTAGAGTA
Found at i:168410 original size:69 final size:69
Alignment explanation
Indices: 168332--168480 Score: 210
Period size: 69 Copynumber: 2.2 Consensus size: 69
168322 TATATTTTCA
* *
168332 TTTTACCGGGAAAAATCGTTGAAATGACATTTCTGCCCT-AAACGAGAACTCAAAAAGAAAAAAC
1 TTTTCCCGGGAAAAATCGTTGAAATGACATTTCTGCCCTAAAAC-ACAACTCAAAAAGAAAAAAC
168396 TTGCG
65 TTGCG
***** *
168401 TTTTCCCGGGTTTTTTCGTTGCAATGACATTTCTGCCCTAAAACACAACTCAAAAAGAAAAAACT
1 TTTTCCCGGGAAAAATCGTTGAAATGACATTTCTGCCCTAAAACACAACTCAAAAAGAAAAAACT
168466 TGCG
66 TGCG
168470 TTTTCCCGGGA
1 TTTTCCCGGGA
168481 TTTTTCGTTG
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
69 66 0.94
70 4 0.06
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (69 bp):
TTTTCCCGGGAAAAATCGTTGAAATGACATTTCTGCCCTAAAACACAACTCAAAAAGAAAAAACT
TGCG
Left flanking sequence: Indices 167832 -- 168331
CTAATTCTCCCGAAGGTAGGCATTTAGCCAAGGCACTGGCGCCTGCCGCATTGAAGAAATGATCC
GCTCCAGTACGGACGCTGGTACACTTCCTACCGAGCTTGCCGCCCTACCCCATTAGTCCCATTCT
TGAGTGAGCCACCCCTATCAGACAAGACCGTATCTAAGGAAAGGCTGTTTTCGCTAATGTTGATA
AGAACGCTTTCCTTTTCTCCTTCGGGTTTCTTTGATGCATCCCAGAAAAAGTAAGATTGTTACTT
GACGGATTATCACTTTCGACTCCTTTGCCAGGATCAAACTCTTCTTGACTATGAGACCCCCCAAA
ACATCGTATCAGGGTCTCAGTTTCTTCTCTTATGATAGAGTTGCTTCTCTTAAGAAATTCTTTCT
TTTCTTACGACATTTTCTCTTTTCTTAAGAGATTTCTCGTTTCATATATATGGAAAAAGTTGACA
CCTCAATTTCATGCCATCCTAAATTTCAAGACAGATATATTTTCA
Right flanking sequence: Indices 168481 -- 168980
TTTTTCGTTGAAAAATCATTTCCCAGATTCGTTTCAGTTGAAGAGATTAAGGATATACAATTAGA
TAAAAAATTCTCTATTTTTGAAACAGGAATTAAAGCAGTAGATCAGCTGAGAAATTCTTCCACCT
AGCAATCGGAGCTGACAGAGGAAGAGACCGATTCGATGCTGGGGAAAGAGTTGTTCTATATATAA
AGAAAGAGAGAAAGAATACTAAGAAAGAGTGCGCATCCGTTCCCCCGTATCTGTATCTTGGCTTG
GCCATAGTTGTCCGGGCTAGAGTAGTTTTCTTTGTTTCATTTAAAGAGATGGGGTTGGTGGTGGA
AATTGTCGACGATCAGTGGTCATTAGTTGTAAGTGATGCGGAGGAAGTGTCTCTCCATGTGGTAC
CGTCACAGTTGAATTACGGCTTTACATGATAGGCCGGGTAGGCAGCGAGCAACCGCGCAGGGCAG
GAGTGAAGAGCTAGCTTCTTATATTTAGTGTTGTACCGTCAGGTT
Found at i:168485 original size:69 final size:69
Alignment explanation
Indices: 168347--168493 Score: 251
Period size: 69 Copynumber: 2.1 Consensus size: 69
168337 CCGGGAAAAA
* *
168347 TCGTTGAAATGACATTTCTGCCCTAAACGAGAACTCAAAAAGAAAAAACTTGCGTTTTCCCGGGT
1 TCGTTGAAATGACATTTCTGCCCTAAACGACAACTCAAAAAGAAAAAACTTGCGTTTTCCCGGGA
168412 TTTT
66 TTTT
*
168416 TCGTTGCAATGACATTTCTGCCCTAAAAC-ACAACTCAAAAAGAAAAAACTTGCGTTTTCCCGGG
1 TCGTTGAAATGACATTTCTGCCCT-AAACGACAACTCAAAAAGAAAAAACTTGCGTTTTCCCGGG
168480 ATTTT
65 ATTTT
168485 TCGTTGAAA
1 TCGTTGAAA
168494 AATCATTTCC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
69 69 0.95
70 4 0.05
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.30
Consensus pattern (69 bp):
TCGTTGAAATGACATTTCTGCCCTAAACGACAACTCAAAAAGAAAAAACTTGCGTTTTCCCGGGA
TTTT
Left flanking sequence: Indices 167847 -- 168346
GTAGGCATTTAGCCAAGGCACTGGCGCCTGCCGCATTGAAGAAATGATCCGCTCCAGTACGGACG
CTGGTACACTTCCTACCGAGCTTGCCGCCCTACCCCATTAGTCCCATTCTTGAGTGAGCCACCCC
TATCAGACAAGACCGTATCTAAGGAAAGGCTGTTTTCGCTAATGTTGATAAGAACGCTTTCCTTT
TCTCCTTCGGGTTTCTTTGATGCATCCCAGAAAAAGTAAGATTGTTACTTGACGGATTATCACTT
TCGACTCCTTTGCCAGGATCAAACTCTTCTTGACTATGAGACCCCCCAAAACATCGTATCAGGGT
CTCAGTTTCTTCTCTTATGATAGAGTTGCTTCTCTTAAGAAATTCTTTCTTTTCTTACGACATTT
TCTCTTTTCTTAAGAGATTTCTCGTTTCATATATATGGAAAAAGTTGACACCTCAATTTCATGCC
ATCCTAAATTTCAAGACAGATATATTTTCATTTTACCGGGAAAAA
Right flanking sequence: Indices 168494 -- 168993
AATCATTTCCCAGATTCGTTTCAGTTGAAGAGATTAAGGATATACAATTAGATAAAAAATTCTCT
ATTTTTGAAACAGGAATTAAAGCAGTAGATCAGCTGAGAAATTCTTCCACCTAGCAATCGGAGCT
GACAGAGGAAGAGACCGATTCGATGCTGGGGAAAGAGTTGTTCTATATATAAAGAAAGAGAGAAA
GAATACTAAGAAAGAGTGCGCATCCGTTCCCCCGTATCTGTATCTTGGCTTGGCCATAGTTGTCC
GGGCTAGAGTAGTTTTCTTTGTTTCATTTAAAGAGATGGGGTTGGTGGTGGAAATTGTCGACGAT
CAGTGGTCATTAGTTGTAAGTGATGCGGAGGAAGTGTCTCTCCATGTGGTACCGTCACAGTTGAA
TTACGGCTTTACATGATAGGCCGGGTAGGCAGCGAGCAACCGCGCAGGGCAGGAGTGAAGAGCTA
GCTTCTTATATTTAGTGTTGTACCGTCAGGTTCCGATTCCGATCC
Found at i:239089 original size:21 final size:21
Alignment explanation
Indices: 239063--239105 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
239053 GAGGGGGGGG
*
239063 GTGCCATCTATACAAGAAGAA
1 GTGCCATCTACACAAGAAGAA
*
239084 GTGCCATCTACACGAGAAGAA
1 GTGCCATCTACACAAGAAGAA
239105 G
1 G
239106 AGGAAGCGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.21, G:0.23, T:0.16
Consensus pattern (21 bp):
GTGCCATCTACACAAGAAGAA
Left flanking sequence: Indices 238563 -- 239062
TCGGGGAATAATCAGAGAAGGTGTCTAAAAAAGGAAGCAGAGGCTCCACGTGACATAGTTACGCT
CAGGTTTCACCAACTTCGCGTCGGGTTCACTGAAGTGAAATCTTGTTAAAGCAAACCAACGGTTG
GTTGAACCTTAGGACGGTAGCGAAAGGAACCTTCTAGCTAACCGGGTCAATTCAAACTCACTGCA
TATTCCATGGAATTGAGAACCCAGCGTAATTGGTTTTCTCCAGCGGCTCTTTTTCCTATATTCTT
TCAGATGGACCTGCTACGTCTGCCCACTACAGAGCAGGCCTGACTCCCGTGAGCGGGTCCGCTGG
CTTTTAGTACGGCTTTTGACTTTTCTGATCCGGCATGATAACAACTCGAACTCAACTTCTATTCT
TTCAAGAGAAGGCACCGAGATCCCGCGTAAGCGTCGTTTGCCCGTTGCCAATAGGATCGACTTGG
GTAGTAAGATTCAATTGTGAGATTCAAAAATACTTGAGGGGGGGG
Right flanking sequence: Indices 239106 -- 239605
AGGAAGCGAAGCTCGGCTCGTTATCGAGGAAGCGGCTGCATCTTAAGTAGGTAGAAGTCAAAGCA
CGACCCAAGCCCGTGAGGTGAGGTCGCGTGTCAAAGCAGCACAAATAGGAATTACATCCAGTACC
GTGGACCAATGAGCAATATGCCCCCAGGTGTCTTTCTTGTGGCCCAGGTCAATGAAGTCAACTCC
CCATTTGGTGTGAGTATTAAAGCCTTGATATCTAAGTTCGGTGGTGATATATTTCCAATGATCTT
CAGAATGACCCGCAGGAAAATAGAATAGAGTCCCAAACCTTTCCTTTCTTTCAGTCGAGCAGCTC
CACCAATAGAATAGGTCAGTCGAGTCCTCGACCGGGTACTCGGCCAGTAGATCAGCTCTAGCTTG
CCCTTTCACCTGTTTTGATAGAAGCATCTAGAGGAACATCCCCATATGGCTATCCTTTGCCAACT
TCATTCATCAGAAGGATGCAAGGAGTCTTTCTGTGTAAAGTTAGC
Found at i:256063 original size:6 final size:6
Alignment explanation
Indices: 256052--256076 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
256042 CGAGGGGAAG
256052 CTCTTC CTCTTC CTCTTC CTCTTC C
1 CTCTTC CTCTTC CTCTTC CTCTTC C
256077 ATAAGAGGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (6 bp):
CTCTTC
Left flanking sequence: Indices 255552 -- 256051
TGTGGGATAGGGCTGGGCTTAGCCTCAAGGGATGGGCTTTTCGCAGTTGGAAAAAGATCAGTTTG
AGCAGTCAGTTTCACTTTCAAGGCTTATACCGAGCGGGACTCTTGCATGACTGTAAGCATGCTTT
ACTGATATGGTCTCTTGTCATTCTATCCGGATCTTTATCTTTGTCTTGATCTTGCTTTCGCTACT
AGATTGACTGAGTCTGCTGACTTGGACTAAAGCTACTACAAAGCCTTCTTTAGGTATGTATTGCA
GTGAGCTACAATTGGGGATTTCCACAACCTCTTCCTTTAGGGGAGGGGAGAGCACCATTTCTATC
CTATTTCAAAGGGTAGGAGGAGCATGTGACTGACCATTGAGGTTGACTAGGCAGGCTCCTCCTTA
TAAGCTCCTCTTTTGTCTTGCTTCTGCTGTCCTAGCATGCCTTGTGATGTCTTTGTCTAAGCTGG
GTAAGTAGGAGTCAGCCTTCCAACTTCCTGAGGAGCGAGGGGAAG
Right flanking sequence: Indices 256077 -- 256576
ATAAGAGGAAGTCCACCGACCTAGCTTAGAAGGAGCAGTCTTTGGCTCACCTGAATGTCTCCGTC
ACGAAAGCCAGTAGAAGGTAGAACTCCACACCTCTACTAGGGGGGTGCCGCCTTCTATGAGGGCT
CTTCAGTAAGAAGGTCCAGTTCCTCTATCTCTATCTCTTTCGGCTAAGGTCCTTATTAGCTAGGT
GAGCGGGAGGTCAAATCCTTAACTTGAAGCTTTTTGCTGAGTTGCTAGCTTTAAGTAAGGAGCGG
GAGCATCAGTCTTCTCCTTCACTCGATTGATTGAATCTGCTACCTCTACTAAAGCTACTGGCAAG
TCTTCTTTGTCTCTGTCTGTCCAGTGAGGTAGAATTGGTCATCCACCATATATCTCCCCCTTTAG
AGTAAAATTAATGTCGTTCTCTAGTTAGTATGCTAGAGGGAATACATCATAACTTTTATACTTGG
TAGTGGCACATTAGGAAATCCAAGGATAGAGACTGAACTTAATTG
Found at i:261742 original size:15 final size:15
Alignment explanation
Indices: 261722--261808 Score: 156
Period size: 15 Copynumber: 5.8 Consensus size: 15
261712 TCTGTGGTGT
*
261722 ATGCCTTCATATTTA
1 ATGCCTTCATGTTTA
261737 ATGCCTTCATGTTTA
1 ATGCCTTCATGTTTA
261752 ATGCCTTCATGTTTA
1 ATGCCTTCATGTTTA
261767 ATGCCTTCATGTTTA
1 ATGCCTTCATGTTTA
261782 ATGCCTTCATGTTTA
1 ATGCCTTCATGTTTA
*
261797 ATGCCATCATGT
1 ATGCCTTCATGT
261809 CTTTAATAGT
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
15 70 1.00
ACGTcount: A:0.22, C:0.21, G:0.13, T:0.45
Consensus pattern (15 bp):
ATGCCTTCATGTTTA
Left flanking sequence: Indices 261222 -- 261721
ACTCAATCTGGCTTGAATGATTGAAGAAAGTGAGCTATCTCTCTCCTCTGAAGATAGGGCTGGCC
TATCCATCTTTTTGCTGTCCATATAGACTCGGATCATGAGTCGAACTATATAATCTCCGTCGTAG
ATTTCAGAATATTTCATAATATATCGAGATATATGAGCATAGACCTCACTCATTGGAATTAACTT
ACAATCTTGATAAGTCAAGGGGATAGCTGGACCTAGCGTAAATGAGATCTCCTCTCCGTAAGATC
GCTTCATGGTTAAGGAAATAGTGAACTTACCGTAACCAGATAAGGATGGGTAAGCAAACTGGATT
AAGAGATCCATGGTCGCAAGACAGAGTAGGTCACTCTCGTTAACAAGAGGGTAAGGCTCGAAGAA
GTGATGTGAAGCAATGATTAACCCAGGATGCGGATCTTGGTGTGTTGTTCGTTCAATCTTTTGAT
ACAAGCGATTCAATAACTGTCCAGTAGATGCGCTGTCTGTGGTGT
Right flanking sequence: Indices 261809 -- 262308
CTTTAATAGTGTACGCAGTAATAGGGAATTTCCTTCCTTTTTTTCTTTAACATTAATATGAATTT
TTCCCACTTTAGCTCATGAGCTTGCCAACAATCCATAGGGTTAGGGGATTGTAAATTACCGCATA
CATTACGAATATAGTTCTCGTAAGAAGTCAGTAATCCCGAGATCCTTGCTTCCCAAGTTGCCCTC
ATATTCTTGGTTATGTTCTCAGGTACATTAGCCTTTAAGTAATAATGAAGCATCTCTTTTGAGAT
TACCTTACGGGCAAAGTAACCCTCAGTAGGTCCATCTGACTCCCTTTTTACAATTGGTTTAATAA
CATTCATATAGATGAACTCGTTGATGATTGAAAGTGGAGGGCCCATGTTACAAATGGCGCCGCTA
TAAATATATGGTATTAAATCGCAATATTGAGCTGTTGTTAGAAAGTTGTCGTGTACTGTGTATAT
AGGCGCATTTATAGAAAGCATATCTTCTACTACTTTCATAGCAAT
Found at i:291806 original size:15 final size:15
Alignment explanation
Indices: 291786--291816 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
291776 AAAGAGAGAT
291786 TTAGATAGATACAAA
1 TTAGATAGATACAAA
291801 TTAGATAGATACAAA
1 TTAGATAGATACAAA
291816 T
1 T
291817 AAGTGCGAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.52, C:0.06, G:0.13, T:0.29
Consensus pattern (15 bp):
TTAGATAGATACAAA
Left flanking sequence: Indices 291286 -- 291785
AGAGAATAGCATATGCTGAGCAAGATCAAAAGGATGAATACCGAAGAGAGGAGGCATTTTCTAAC
ATGAGGAGATAACGGGCGAAACATGGATTTTTGTTTAGTAGGATCGCTATTTCCTGCACAGTACT
TGCCCGTAGTGATATCCTAATTCGGCTACCTCCCCCACTCATTAAGGCAGAACATAAGAAACTAT
TGCCAAGAGGGACCGGAGAACTCTTTGCCCCATCACCTACTAAAGGATCTGCTACCGGATTGCTG
CACTTCTCAGGGCCCTCTGCCTCAGAGCCGGGGCGATCCAGTTACCCGGAGTTCAAATTCGATCC
ATTAGGTTCTTCGATTTGTTCAGAAAAGAAACGAGAGACAAGAAAACATCTTTGATTACGATTAA
AAGGAACAATCTCAAATAGACCAAGATCCAATTTCGGGTCATTTCTTGGTGAAAATGATCTGCCA
TAATCTCTTCGATCCCTTCATTGATGTGCCAGAATAAAGAGAGAT
Right flanking sequence: Indices 291817 -- 292316
AAGTGCGAATTCTGACATCACCACAGCCCACTTGGTTCTCTCGCTCCTTGCTCGCGGAGCGGCAT
ACCGGAAAAAAAAGAAAGAAGAAAATCCAGAGACAAAAGAAATGGAAGACCCTTCCATTACTTTC
TTTTTGGAAGGTAATCTTGAATCAGCAGCTTAAGGAGATTGGGGTCATCCCGCCCGGAAGCTTTG
AAGTTGAAGCTAAGCTATTTAGAGAAAGACCGGCGGAGGGACTTGAAAGAATGTAAAAACTTGCA
CTGTCCCTTCTTCCTCCTCTAGGATTCCCCTTGCTGGGAGAACTGTTCTGGGAAACCCTATGTCT
TTATTTATTAAAGTCTCTGGGAAAAAGAAAGATTTTTTTATGTTTCAAATCATATGACAAGACTT
TTGATTCAATGAACTTGGGCAGTTACGTTAATGGCCTATCCCAATTTATACCTAACTTTTTATCA
ACCCATAAATCTTCCCAGATCATCCTAAGACCCCCACTAGAGATT
Found at i:318430 original size:13 final size:13
Alignment explanation
Indices: 318412--318436 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
318402 GCACCTAGCA
318412 AGGAAAGAGAAAG
1 AGGAAAGAGAAAG
318425 AGGAAAGAGAAA
1 AGGAAAGAGAAA
318437 AAGGGCCAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (13 bp):
AGGAAAGAGAAAG
Left flanking sequence: Indices 317912 -- 318411
GCCCTACTGAGGACGGTTGGGTTGGGAAGAGAATAGCATACGAAGATCAAGTAGAGGTAGTAGTT
GGATTGTTCGCATGTGTCCTAAAAAAGTGCCCCATCTGGTTGTTATTGAAGCAATGAAAGTCTAA
CCTTGATCAGTCCCGAGGTTAGCTTCAGCTAAGTTGTTTACCACTGAAGGGTAAAAAAGATTAGA
AACTAGCTAAAGACCAGCTACGTATCAAGGGATCGGGCCTCAACGCATCCTTTATGAGTTGACTA
GGTCTCTCTAAATAAAACATGCTTTGTAGAGGCGATTCCCATCTAACTTGGTCTATTATCGATGA
TTTTCTTAGAAAGAACTGCGTGAAAGCATGATTTGTGTGGGTTATCTATAGAAAGCGGATTCTCC
TTTATCTTTATGGTATGGAAAAGAAAAGAGTTGAAAAGAGGGATCTCCGGGATCAGAAGGAAAAG
AAGAAAGGGTAGTTCAACTCATGCTTCCCAGAGATGCACCTAGCA
Right flanking sequence: Indices 318437 -- 318936
AAGGGCCAAATCGCCTGCATGCAATTCGAACAAGAAACTTACCTCCGTGAGTTAACAGCAGGAAA
CACATACTCTATTCTCTGAAAATCATTGCAAAATGATAAAACTCTTTCTCCTCTCTTTTCTCAAA
GTAAAATCAGCCCTTTCTCTTTATATAGGATATAGGCAATGATATGCTGAAATTACCGAAGTCTG
ACTACCAAGTGCAGCCCGAAGATGAAGCTGCTCAAAGTTATGACCACAGTCAGGGAGTTTCAGTA
AGCAAGTTTATAAAGAAAAGAACCTACCAGGGAAGGCGGGATCCCACTTGAATAAGGAATAAGGT
AGGCAAGCAAGCCAGGTAGATTAGTTGAGTAGGTATTCACTACCCCACCCAACCAAGCGAGCCAT
ACCAGCAAGCAGGCACCAAGCAAGCCACAGGACTGAGAGCCTGATAGTTCATGGGAGTAGTTCTT
ATCAACTCAGCAGTAGTCTTTCTCAAGTATGAATAATGATAAAAA
Found at i:335375 original size:3 final size:3
Alignment explanation
Indices: 335367--335396 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
335357 AAAATCAGCC
335367 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
335397 GCAGAGTGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Left flanking sequence: Indices 334867 -- 335366
CGAAAATAGGCCGCGGATGGTGGTCGTGGTAGGTTCGAGGATCTTACGCGGCGGAGCGAACTCTT
CTATCGTGTTGCATTTCCTCTGGCGGCGTAACTGCACCCCCTCGATCCATCGTACTGGAGCGATC
TGAGAAGAACGATTAGGGTCATATTCTATCCTTTCTACAATGCCAATAGACGAAGTGCTTCGTTT
CAGATCAATTCTTCGCTGCAATCGCTTCGATCCACCCCCTCGGTGAAAAACCGTAATACGCCCTG
AGGAATTCCTACCAGCAGACTTCCCTGTACTCAAAGTGAATTGTCTAAGTGCTCTCCCCTCTTGG
CTTTGTCTCATTGTCTATCTCGTAATCATTCGATTCCGTACGAATTAGCTCCTACTCCTCCTCCT
TCTCCTTTAGGATAGGATCGTCGTTGGTCCTTCGCAAGTGCGCTCCGCGAGCACTGTACATCTTT
CTTAGATGAGCAGACGCAGCAGTGCCTCAACTAAGAAAATCAGCC
Right flanking sequence: Indices 335397 -- 335896
GCAGAGTGAAACAATAAAAGCAAGCGTGCTCTTATTATACGTTAGACGATGCCACCTCCCACTTG
ACTTTAGTTCGCCCGGCATAGCCGCATTTCAACCTTGCCTCTCCGGGGATGAGAACCTATGATTT
GATCTGCTAGCTTGAACGCCTGGATCATGCCGAGAAGATGAAAAAAAGACTGTCGGAACCGATCG
GAGGAGTATTTCAGAGTCCATCCCCGCCTTTATTAAGATTAAGAAAGAAAAGGCACGGCAGCGAT
AGATGCCGTGATGACGCAGTTGAGTGTTCATTCGATCCACCACCCGAGGCCAGGCCGATAAAACC
TATTCTAGTAACTTCCGATTGGAAGCTGAACCAGAAAGATGAAAATCTCGTGATAAATGAAAATC
TCGTAGTATAGTTGCAGACAACAAAATAACCAGCAAACATGGTGCAGCAGTCAGGCAGAAAAAGA
TCAGAGACACACGAGCAGTCCCACCTGCCCAGTTGTCATGTCCCA
Found at i:338000 original size:29 final size:29
Alignment explanation
Indices: 337968--338023 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
337958 GAAAATAGAA
337968 CTATTAACTACCTTAAACCGGGAATAAAG
1 CTATTAACTACCTTAAACCGGGAATAAAG
*
337997 CTATTAACTACCTTAAAGCGGGAATAA
1 CTATTAACTACCTTAAACCGGGAATAA
338024 CAAATACTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.41, C:0.20, G:0.14, T:0.25
Consensus pattern (29 bp):
CTATTAACTACCTTAAACCGGGAATAAAG
Left flanking sequence: Indices 337468 -- 337967
ACACCCCATCAGACGAGCCACCACAGTCACCAGATACAAGTACTGTGGGACGAAGCCAACAAGAC
CACCAGCGAGACTCCATCATACGGTTTGGCACGGAGCCTCCACAACAGAAGGTCGAGTACAGGGC
CCCACAGGGCTTCCCCAGTAGAGGTGACTACAGGAGTGAGCAGGATGACCCTAACTTTCTAATTA
GAGAGTAACTCAGAACTCATAACTACCTGAAACTCAGAACAACTAATACACAACTACTACTAATA
CAACTCAATACTACCTATTCATTAAGGGAATAACTAATACATCACTCTCCTTTACTTTCCGAGGA
GAGGAAAGAAGTTACTCGGAGGAGAACAACAACAAATAATACTACTTAAACTAATACCTGATACC
TGAAAGGAGAGGAACTAAGTTACTCGACTGAAAGGGGGATAACTATGAAATAAGTAACTCATTAA
CTATTAACTCGTAACTACCTTTAACTCCTAACTCCGAAAATAGAA
Right flanking sequence: Indices 338024 -- 338523
CAAATACTAATACGTTCCTCTACTCTCCAAAGGGAGGAGTGTAACTAATACGTAACGTTCCTCTA
CTCTCCAAAGGGAGTAGAGTCACTAATAGAAACTCCCAATTCCCAACTCATAACTGAGAACTCAT
AACTCATAGCTACGTTAACTCATAGCTCAGAACTCCTAACTACCTGTAACTACTGAAAAAAAGTA
AAACAACACTAACCAATGCATATAGCTCCTTTACTTTCCCAACTGGTAACTCTCCTGTATTAACT
CAAGTACTACTTTCTCCTGTATTAACTGAACTACTACTTTCAGTACTACTTCCTACTTTTCCTTC
CAACTACTTTTTCCTGGACTAACCAACTACTACTACTTTCAAGTAACCAAGAATAACTCATACGT
AACTCGACTCCCAAAGGAGAGGAGAGTTACTGACTAACTATTAACTGATTAACTCATAACAAGGG
GAACTACTATTTCCTGACCCAAATACCTTTTCCTGTATTTAACTA
Found at i:338088 original size:43 final size:43
Alignment explanation
Indices: 338035--338116 Score: 137
Period size: 43 Copynumber: 1.9 Consensus size: 43
338025 AAATACTAAT
*
338035 ACGTTCCTCTACTCTCCAAAGGGAGGAGTGTAACTAATACGTA
1 ACGTTCCTCTACTCTCCAAAGGGAGGAGAGTAACTAATACGTA
* *
338078 ACGTTCCTCTACTCTCCAAAGGGAGTAGAGTCACTAATA
1 ACGTTCCTCTACTCTCCAAAGGGAGGAGAGTAACTAATA
338117 GAAACTCCCA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (43 bp):
ACGTTCCTCTACTCTCCAAAGGGAGGAGAGTAACTAATACGTA
Left flanking sequence: Indices 337535 -- 338034
CCAGCGAGACTCCATCATACGGTTTGGCACGGAGCCTCCACAACAGAAGGTCGAGTACAGGGCCC
CACAGGGCTTCCCCAGTAGAGGTGACTACAGGAGTGAGCAGGATGACCCTAACTTTCTAATTAGA
GAGTAACTCAGAACTCATAACTACCTGAAACTCAGAACAACTAATACACAACTACTACTAATACA
ACTCAATACTACCTATTCATTAAGGGAATAACTAATACATCACTCTCCTTTACTTTCCGAGGAGA
GGAAAGAAGTTACTCGGAGGAGAACAACAACAAATAATACTACTTAAACTAATACCTGATACCTG
AAAGGAGAGGAACTAAGTTACTCGACTGAAAGGGGGATAACTATGAAATAAGTAACTCATTAACT
ATTAACTCGTAACTACCTTTAACTCCTAACTCCGAAAATAGAACTATTAACTACCTTAAACCGGG
AATAAAGCTATTAACTACCTTAAAGCGGGAATAACAAATACTAAT
Right flanking sequence: Indices 338117 -- 338616
GAAACTCCCAATTCCCAACTCATAACTGAGAACTCATAACTCATAGCTACGTTAACTCATAGCTC
AGAACTCCTAACTACCTGTAACTACTGAAAAAAAGTAAAACAACACTAACCAATGCATATAGCTC
CTTTACTTTCCCAACTGGTAACTCTCCTGTATTAACTCAAGTACTACTTTCTCCTGTATTAACTG
AACTACTACTTTCAGTACTACTTCCTACTTTTCCTTCCAACTACTTTTTCCTGGACTAACCAACT
ACTACTACTTTCAAGTAACCAAGAATAACTCATACGTAACTCGACTCCCAAAGGAGAGGAGAGTT
ACTGACTAACTATTAACTGATTAACTCATAACAAGGGGAACTACTATTTCCTGACCCAAATACCT
TTTCCTGTATTTAACTACTACTACCAGAACTGGGAATAAGTAATATATATATCTGCTTTGAAGAA
CTAATACCTGAGCAACTAATATTACCTTGTTTTTCTTTAACTCTT
Found at i:338307 original size:27 final size:27
Alignment explanation
Indices: 338269--338324 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
338259 AACTGGTAAC
*
338269 TCTCCTGTATTAACTCAAGTACTACTT
1 TCTCCTGTATTAACTCAACTACTACTT
*
338296 TCTCCTGTATTAACTGAACTACTACTT
1 TCTCCTGTATTAACTCAACTACTACTT
338323 TC
1 TC
338325 AGTACTACTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.25, C:0.27, G:0.07, T:0.41
Consensus pattern (27 bp):
TCTCCTGTATTAACTCAACTACTACTT
Left flanking sequence: Indices 337769 -- 338268
TCACTCTCCTTTACTTTCCGAGGAGAGGAAAGAAGTTACTCGGAGGAGAACAACAACAAATAATA
CTACTTAAACTAATACCTGATACCTGAAAGGAGAGGAACTAAGTTACTCGACTGAAAGGGGGATA
ACTATGAAATAAGTAACTCATTAACTATTAACTCGTAACTACCTTTAACTCCTAACTCCGAAAAT
AGAACTATTAACTACCTTAAACCGGGAATAAAGCTATTAACTACCTTAAAGCGGGAATAACAAAT
ACTAATACGTTCCTCTACTCTCCAAAGGGAGGAGTGTAACTAATACGTAACGTTCCTCTACTCTC
CAAAGGGAGTAGAGTCACTAATAGAAACTCCCAATTCCCAACTCATAACTGAGAACTCATAACTC
ATAGCTACGTTAACTCATAGCTCAGAACTCCTAACTACCTGTAACTACTGAAAAAAAGTAAAACA
ACACTAACCAATGCATATAGCTCCTTTACTTTCCCAACTGGTAAC
Right flanking sequence: Indices 338325 -- 338824
AGTACTACTTCCTACTTTTCCTTCCAACTACTTTTTCCTGGACTAACCAACTACTACTACTTTCA
AGTAACCAAGAATAACTCATACGTAACTCGACTCCCAAAGGAGAGGAGAGTTACTGACTAACTAT
TAACTGATTAACTCATAACAAGGGGAACTACTATTTCCTGACCCAAATACCTTTTCCTGTATTTA
ACTACTACTACCAGAACTGGGAATAAGTAATATATATATCTGCTTTGAAGAACTAATACCTGAGC
AACTAATATTACCTTGTTTTTCTTTAACTCTTACTTCCTGAACTGGGAATAAGTAATAGATATAT
CTCCTGTATTAACTGAACTACTTGTATCTCCTGTACTTTCACAACTAATACCTGAAAAAGGGGAA
TAACTCTGAAGTAACTCAACTACTTGAACTACTACAACTAATACTACTATCTTTTATCTTTTCCT
ATCTTTTTTTAACTACTACTTTTAGTAACTAAAACTACTTCCTTT
Found at i:338959 original size:19 final size:19
Alignment explanation
Indices: 338935--338983 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
338925 GGGAGGTAAA
*
338935 GGGAGGTAGGTAATAAAGC
1 GGGAGGTAGGTAACAAAGC
*
338954 GGGAGGTAGTTAACAAAGC
1 GGGAGGTAGGTAACAAAGC
338973 GGGAGGT-GGTA
1 GGGAGGTAGGTA
338984 TTTAGTGGTA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 3 0.11
19 24 0.89
ACGTcount: A:0.33, C:0.06, G:0.45, T:0.16
Consensus pattern (19 bp):
GGGAGGTAGGTAACAAAGC
Left flanking sequence: Indices 338435 -- 338934
GAGAGTTACTGACTAACTATTAACTGATTAACTCATAACAAGGGGAACTACTATTTCCTGACCCA
AATACCTTTTCCTGTATTTAACTACTACTACCAGAACTGGGAATAAGTAATATATATATCTGCTT
TGAAGAACTAATACCTGAGCAACTAATATTACCTTGTTTTTCTTTAACTCTTACTTCCTGAACTG
GGAATAAGTAATAGATATATCTCCTGTATTAACTGAACTACTTGTATCTCCTGTACTTTCACAAC
TAATACCTGAAAAAGGGGAATAACTCTGAAGTAACTCAACTACTTGAACTACTACAACTAATACT
ACTATCTTTTATCTTTTCCTATCTTTTTTTAACTACTACTTTTAGTAACTAAAACTACTTCCTTT
AGGTATCTTTAACAACTACATTGAATCTCTTAACTCCTATTGGGTGAGTAACAAATAGTAAGTAA
TAGATATAGAACAAGTAATACCGGAAAGGGAGGTGGGGAGGTAAA
Right flanking sequence: Indices 338984 -- 339483
TTTAGTGGTATTTAAGGGGAGTAACAAATAGTGGGAATAAGTAATAGATATCTCTCCTGTACTAA
TACTTGAAGTACTTAACCTTCCTTTGGGTATCTTAATATCTTTAACTCCGAATGGGGTAACAAAT
ATTGGGGAATAATTAATACACCTACTACTACTTTTAAAGGTGGGAGTAAGAAATCGGGTAGGTAT
TTAAGGGTGGGAAGTACCAAGAAGTAACAAAGCGGGTATGTCTTTAAGGGTTGAGTGTGAATAAC
TGAATAACAAATAGTGGGTAGGGGGAAGGGCGTAGTTAATAATAATAATAAAAAGGGGTAGTAAC
TAATACATAGTTCCCGGTCCTGACTAAAAGACAAAAGACAAAGGAACTAACTCAAAGCAAAGCGA
GGAGAGGAAAAAAAGGGCGGGAGGTAATACATAAATCGAATGAAAGGAGAACAACTAATAACTCA
GTTACTATCCGGAAGGGGAGGAACTCATACATATATATCCAGAAA
Found at i:349318 original size:16 final size:16
Alignment explanation
Indices: 349297--349329 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
349287 CGAATTACGG
349297 CAAAATAGAAGATCTA
1 CAAAATAGAAGATCTA
*
349313 CAAAATAGAATATCTA
1 CAAAATAGAAGATCTA
349329 C
1 C
349330 GTGACCCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.55, C:0.15, G:0.09, T:0.21
Consensus pattern (16 bp):
CAAAATAGAAGATCTA
Left flanking sequence: Indices 348797 -- 349296
GGTTTCTCGGCCTGGTATCCTGCACCTCGCGTTCATGATATCTACATTCCACTGTGCCCCGGAGA
CACGGTCGAAGCACGCCCGCCCAGTGTGCTTCTTTCACGACATGCTCTGGTCCCGGGTGTTTCCC
AGTGGTCTTCTAGCGTTAGAAGAAGTCGTGTCCGTCCCGGACATCCGCAACGTCCTCCCACGCTT
TTTTTTTTAATATAGGAAAAACTGAAGAAAAAAAAAGACTCCCTTTCGGTGACTTTCGCGGTCGC
CCTCACTGAACCGACTTGAATCTGAACTACGATTCAGAGCTAGTCTTACCGAAATCGGATTTCCT
TTTCGTGCCATATGCCTTTAGACTTGACTTTATTTCCCCCTTTTTCTTCCCGGTCCAATATTTGT
TTAAGAAAGTCTTCGTTTCCGTGTAGAACTCAAAATTGTTGACCTCCTTCAGTGATCTTACAACG
AGTTTTGCAAAAGTAAATTCGTATGGAGCAATTAACGAATTACGG
Right flanking sequence: Indices 349330 -- 349829
GTGACCCAAATTTCCTGTTCAAAAAAAAGAATTCCACTCTTATTTCTCGGTGCGGTGGCATCAAC
AATTCCATCAGTTCTTGGTTCTGTGGATGAAATTCCAAAAGAGAGGGCCCTGGTAGAAAGACAGA
AATCGTGTTCGGGCACCGTACCCTAGGTAGGTCCTCTCTTCTCTATATGCTAAATCTCCATACCT
CTCCTTCTCTTCCGAGATAGGGAACTCCAAGCCATCAACATTTGGGCCTTGATGCAAACCTATTC
GAAACAAACCTATTCACCCTAACCCCCCCACCACCCTTGGTTATTGTTATTTCTTTGCTTCTATT
CCTTCTATCTGCCTTTACTTCGTTCGATATGGTATACTTTTCTTCGGATTTCAATTTAAAGTGAG
ATGGTGAGGTGAGAGTCTTTTCCTGACCCGAAAGCAAGGGGAGGGTCAGACTGTACCGCTTTTCA
GATGCAAATAGGTTCCCCTTTGGCTGCTCCTCTTATTCCATTACC
Found at i:357174 original size:17 final size:17
Alignment explanation
Indices: 357124--357167 Score: 88
Period size: 17 Copynumber: 2.6 Consensus size: 17
357114 CACTAAGTAT
357124 TAATAATGAATAAGGAA
1 TAATAATGAATAAGGAA
357141 TAATAATGAATAAGGAA
1 TAATAATGAATAAGGAA
357158 TAATAATGAA
1 TAATAATGAA
357168 AATGGAAGGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (17 bp):
TAATAATGAATAAGGAA
Left flanking sequence: Indices 356624 -- 357123
GAGTTGATGTGACCCAATCATGTGTTTGCTATGATGTTTTAATAGCTGATGCTGGTTGAATCCCT
GGGTTCGGTTCTTATTGGGTGGATGCAGGTGGGTGTGCGGCATGCTGTTGATCAGTAAGGTAAGC
ATTCAACTGTGGTAAGAAGTGTGTGGATGGTACACTGGGCTAACCCCTGTCGGATAGTTAGGGAT
GTCCGGGGAGGTGGACTCTGGATTAGATCCCGAATCTCCTGCCTTAGTCAGAGTAATTGTTTGAC
CGTTCCTATCTGCATGACTGCTTTCGTCTGATGAGTGCCCCTCACTCGCCTCTCTTTCCTTAAGG
TTTTTTCGAGGAATGTTCACTCTACGCTAGAGCACGCACAAAAGGCTCGGTACCTCTAAAGCCCT
ATCTAAGTAAACCGAAAGCCTCTTTTCTTCCCTATGCTCCTCAATCGAGGGTGAGAATCGCTAGC
TGCCAAAGAGCTCTCTCCTATAACTAATCCACTGCCACTAAGTAT
Right flanking sequence: Indices 357168 -- 357667
AATGGAAGGGGGTGATCCAATACATATATAGCTGCATCAGAACCGAGCTATTACAGCTTTTTAGT
GGGATCCAATGCTTCAAAGCAATCTAACTCCTCTATTCATTCGGCAGAGATAGGGGAATCAAATT
CATATCTTTATGCCTGGGAATGATATAAGAATGAATGAAGCCGATAGAGGAATATTTGAGTAAAG
CCCGCCCTTGATTGAATGATTGATGGAATAAGCTTTTCCCCCAGATGACGCCGGATGGATCGATA
AGATTGGAAGTCTTCAGAGGTAGACTGCCTCGTCCCTTTACCTTTCCTTTGATTCGATTAATAGT
TAATAGAAAGAGAGAGAGATTGGTCCCTAACTCATTTCCGGATAAATCGGCAGCGGAACGAATTT
CACTTATCGGGATCTTTACCTCTCCATATATCCACATTGTAGGGGCGGCTTGACCCCTTAGCAAG
CTAAGCAACCTATCTATCTTTTCAATCGCCTAGCTATTTAACCAC
Found at i:366651 original size:69 final size:69
Alignment explanation
Indices: 366498--366641 Score: 245
Period size: 69 Copynumber: 2.1 Consensus size: 69
366488 AATGATTTTT
*
366498 CAACGAAAAATCCCGGGAAAACGCAAGTTTTTTCTTTTTGAGTTGTGTTTTAGGGCAGAAATGTC
1 CAACGAAAAATCCCGGGAAAACGCAAGTTTTTTCTTTTTGAGTTCTGTTTTAGGGCAGAAATGTC
366563 ATTG
66 ATTG
*
366567 CAACGAAAAAACCCGGGAAAACGCAAGTTTTTTCTTTTTGAGTTCTCG-TTTAGGGCAGAAATGT
1 CAACGAAAAATCCCGGGAAAACGCAAGTTTTTTCTTTTTGAGTTCT-GTTTTAGGGCAGAAATGT
*
366631 CATTT
65 CATTG
366636 CAACGA
1 CAACGA
366642 TTTTTCCCGG
Statistics
Matches: 71, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
69 70 0.99
70 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.31
Consensus pattern (69 bp):
CAACGAAAAATCCCGGGAAAACGCAAGTTTTTTCTTTTTGAGTTCTGTTTTAGGGCAGAAATGTC
ATTG
Left flanking sequence: Indices 365998 -- 366497
GTCTCAGTCTTAAGTACTGTATGGGTGCTTGCGCGCTGCCATCCCTTCACGAACGCTCACTATCT
CACTACAGGTTGACTTGTTGACACGGACGGGTGCAGCCTTCCCACACCTAGCAATTTCGCCTCTA
CTTGAACAACTGCGTATATCCCTCTATTTAATCTTTTTCCTTTTTGTCCCTTTTCCTGGTCGATC
TCCATTTCACTTCTCGTCTTATCGTTGGAGGTCTGCGTTGCTGCATTGAAGAGCCCGCCGCTAGA
GCCGATCCAGGGACCCATGGGGGTGGGGAATCCATGGAGGTTCGCCGACGCGGGGGTCGCCGAGA
TGGGTCTGCAAACAAAGGGGTAAAAGAAAGCACTACGAAGAGACAGAACAAAGAGCAGGGTGGTC
GTAGATCAGCTGATCTACTGCTTTAATTCCTGTTTCAAAAATAGAGAATTTTTTATCTAATTGTA
TATCCTTAATCTCTTCAACTGAAACGAATCTGGGAAATGATTTTT
Right flanking sequence: Indices 366642 -- 367141
TTTTTCCCGGTAAAATGAAAATATATCTGTCTTGAAATTTAGGATGGCATGAAATTGAGGTGTCA
ACTTTTTCCATATATATGAAACGAGAAATCTCTTAAGAAAAGAGAAAATGTCGTAAGAAAAGAAA
GAATTTCTTAAGAGAAGCAACTCTATCATAAGAGAAGAAACTGAGACCCTGATACGATGTTTTGG
GGGGTCTCATAGTCAAGAAGAGTTTGATCCTGGCAAAGGAGTCGAAAGTGATAATCCGTCAAGTA
ACAATCTTACTTTTTCTGGGATGCATCAAAGAAACCCGAAGGAGAAAAGGAAAGCGTTCTTATCA
ACATTAGCGAAAACAGCCTTTCCTTAGCCATTCCTTACCAAAAACTAGATATTGATTGATTCGCT
CTCATCCTTCCTTCTCTACTTCCCTCAAGTCATTCTCAAACGCAGTTACTTCTTCACCGGACATG
AGAGGGAACCCTATTCAATACTAGAGAGAGGTCTCCACTAAGAGC
Found at i:366751 original size:19 final size:19
Alignment explanation
Indices: 366724--366784 Score: 59
Period size: 20 Copynumber: 3.1 Consensus size: 19
366714 CCATATATAT
*
366724 GAAACGAGAAATCTCTTAA
1 GAAAAGAGAAATCTCTTAA
* *
366743 GAAAAGAGAAAATGTCGTAA
1 GAAAAGAG-AAATCTCTTAA
* *
366763 GAAAAGAAAGAATTTCTTAA
1 GAAAAGAGA-AATCTCTTAA
366783 GA
1 GA
366785 GAAGCAACTC
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
19 8 0.24
20 26 0.76
ACGTcount: A:0.52, C:0.08, G:0.20, T:0.20
Consensus pattern (19 bp):
GAAAAGAGAAATCTCTTAA
Left flanking sequence: Indices 366224 -- 366723
TCTGCGTTGCTGCATTGAAGAGCCCGCCGCTAGAGCCGATCCAGGGACCCATGGGGGTGGGGAAT
CCATGGAGGTTCGCCGACGCGGGGGTCGCCGAGATGGGTCTGCAAACAAAGGGGTAAAAGAAAGC
ACTACGAAGAGACAGAACAAAGAGCAGGGTGGTCGTAGATCAGCTGATCTACTGCTTTAATTCCT
GTTTCAAAAATAGAGAATTTTTTATCTAATTGTATATCCTTAATCTCTTCAACTGAAACGAATCT
GGGAAATGATTTTTCAACGAAAAATCCCGGGAAAACGCAAGTTTTTTCTTTTTGAGTTGTGTTTT
AGGGCAGAAATGTCATTGCAACGAAAAAACCCGGGAAAACGCAAGTTTTTTCTTTTTGAGTTCTC
GTTTAGGGCAGAAATGTCATTTCAACGATTTTTCCCGGTAAAATGAAAATATATCTGTCTTGAAA
TTTAGGATGGCATGAAATTGAGGTGTCAACTTTTTCCATATATAT
Right flanking sequence: Indices 366785 -- 367284
GAAGCAACTCTATCATAAGAGAAGAAACTGAGACCCTGATACGATGTTTTGGGGGGTCTCATAGT
CAAGAAGAGTTTGATCCTGGCAAAGGAGTCGAAAGTGATAATCCGTCAAGTAACAATCTTACTTT
TTCTGGGATGCATCAAAGAAACCCGAAGGAGAAAAGGAAAGCGTTCTTATCAACATTAGCGAAAA
CAGCCTTTCCTTAGCCATTCCTTACCAAAAACTAGATATTGATTGATTCGCTCTCATCCTTCCTT
CTCTACTTCCCTCAAGTCATTCTCAAACGCAGTTACTTCTTCACCGGACATGAGAGGGAACCCTA
TTCAATACTAGAGAGAGGTCTCCACTAAGAGCTTTTAGGCCCTACAGCCTCTCATCCTCACATTG
AATCCACAGCAAGGTCTTGCAGCCCGGATTCAGTACTCTTACCTGACATTCGAGTAAAGCATAGT
CTTTACTATAGCCTTCCCGGGTATCTCTTTTCGCATTCCATTCGC
Found at i:366783 original size:20 final size:20
Alignment explanation
Indices: 366732--366784 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
366722 ATGAAACGAG
*
366732 AAATCTCTTAAGAAAAGAGA
1 AAATGTCTTAAGAAAAGAGA
*
366752 AAATGTCGTAAGAAAAGA-A
1 AAATGTCTTAAGAAAAGAGA
*
366771 AGAATTTCTTAAGA
1 A-AATGTCTTAAGA
366785 GAAGCAACTC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 2 0.07
20 26 0.93
ACGTcount: A:0.53, C:0.08, G:0.17, T:0.23
Consensus pattern (20 bp):
AAATGTCTTAAGAAAAGAGA
Left flanking sequence: Indices 366232 -- 366731
GCTGCATTGAAGAGCCCGCCGCTAGAGCCGATCCAGGGACCCATGGGGGTGGGGAATCCATGGAG
GTTCGCCGACGCGGGGGTCGCCGAGATGGGTCTGCAAACAAAGGGGTAAAAGAAAGCACTACGAA
GAGACAGAACAAAGAGCAGGGTGGTCGTAGATCAGCTGATCTACTGCTTTAATTCCTGTTTCAAA
AATAGAGAATTTTTTATCTAATTGTATATCCTTAATCTCTTCAACTGAAACGAATCTGGGAAATG
ATTTTTCAACGAAAAATCCCGGGAAAACGCAAGTTTTTTCTTTTTGAGTTGTGTTTTAGGGCAGA
AATGTCATTGCAACGAAAAAACCCGGGAAAACGCAAGTTTTTTCTTTTTGAGTTCTCGTTTAGGG
CAGAAATGTCATTTCAACGATTTTTCCCGGTAAAATGAAAATATATCTGTCTTGAAATTTAGGAT
GGCATGAAATTGAGGTGTCAACTTTTTCCATATATATGAAACGAG
Right flanking sequence: Indices 366785 -- 367284
GAAGCAACTCTATCATAAGAGAAGAAACTGAGACCCTGATACGATGTTTTGGGGGGTCTCATAGT
CAAGAAGAGTTTGATCCTGGCAAAGGAGTCGAAAGTGATAATCCGTCAAGTAACAATCTTACTTT
TTCTGGGATGCATCAAAGAAACCCGAAGGAGAAAAGGAAAGCGTTCTTATCAACATTAGCGAAAA
CAGCCTTTCCTTAGCCATTCCTTACCAAAAACTAGATATTGATTGATTCGCTCTCATCCTTCCTT
CTCTACTTCCCTCAAGTCATTCTCAAACGCAGTTACTTCTTCACCGGACATGAGAGGGAACCCTA
TTCAATACTAGAGAGAGGTCTCCACTAAGAGCTTTTAGGCCCTACAGCCTCTCATCCTCACATTG
AATCCACAGCAAGGTCTTGCAGCCCGGATTCAGTACTCTTACCTGACATTCGAGTAAAGCATAGT
CTTTACTATAGCCTTCCCGGGTATCTCTTTTCGCATTCCATTCGC
Found at i:385255 original size:13 final size:13
Alignment explanation
Indices: 385237--385263 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
385227 CAACTGCAAC
385237 TGATTCACATTTT
1 TGATTCACATTTT
385250 TGATTCACATTTT
1 TGATTCACATTTT
385263 T
1 T
385264 CTTTTTCCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.15, G:0.07, T:0.56
Consensus pattern (13 bp):
TGATTCACATTTT
Left flanking sequence: Indices 384737 -- 385236
ACTCTTTTCATTTAAAAAAAAAAAGAGGATTAAAATACTATGAGTATAAGCAACTATGCCAATAA
CCTATTGAACGCTTCTAGGTATACAGTTGACATATAATTTAGATGGACTAATCTCTCGCGGGATG
AAATATGCAGTTATCCCAATCCATGGGAAATGGTGACATTGTCTCGATAATCAAAGTCAAGAATG
ACTGTGACCAAGAGTGATTGTGAAGAAGATGGTCCCGCCACCTATCTTGCCCTAAATGCAACTGG
CTGCAAACATTATGGAGAGATTTTGAGGGCTCTAAGCGCCAGCATTAATGCAATAGAAAAGTGTG
AGAAACTAGATTGGAAAATTGTAAAGGAATTCTATGCTTTTCCTTTTTCTCATATCTATTGAAAG
ATAAACAATTTAACCTTTAACTACTTTAACTAATACAGAAAGAGCTTAACTGATTGCTCGAAAGC
CCTCCTTTCCCTTAGAATAGAAACTTAACCTTAACCAACTGCAAC
Right flanking sequence: Indices 385264 -- 385763
CTTTTTCCAACCAAAACTTTACGCACAAAGAGACCTGAAAGACAAACGAAAGACTGAAGGAAGAT
GATAACCTATCGTTCTACCGGTTGCATTAGAAAGTAGATCCCCGCATCATCGCTCGGGATCAGAG
ACCTTCATATTTAAGTACGGCTTTTAACCACACACAAAGAAGGGCCTGTATGAGTGGCATCACAG
ACACGTTGACTTACAACTTTGAAAGATCAAAAATGTTTACCTTTTCGAAGGGCAAGAGGAAAAAA
CAAGTCTAAAACAGAGATACTCGCCGCCACTAGGCAGTCATCTTTGATCCTGATTGGCCGACCTT
TCCGATCCCGAAACAAACATAGTTCGGCTCTCTTTTTTCGGTCATTCAAATGCAAAATTCCGTGA
AGACAACGAGAGATGCCGCCTGCCCTTTCCGTTCCTTCTCTTTCGGAGTGGAGCACTTCTCTTTG
TTCCTTTCTAATAAGCTTGGTACGTGTTTTGAGCGAGCCTTCGCG
Found at i:389067 original size:52 final size:52
Alignment explanation
Indices: 388989--389098 Score: 220
Period size: 52 Copynumber: 2.1 Consensus size: 52
388979 CCCGCTCGGG
388989 GCTTACTTCAAGGAAAGGAAAGATAGGATTGGGCAATTCCGCCGGTTCTGGA
1 GCTTACTTCAAGGAAAGGAAAGATAGGATTGGGCAATTCCGCCGGTTCTGGA
389041 GCTTACTTCAAGGAAAGGAAAGATAGGATTGGGCAATTCCGCCGGTTCTGGA
1 GCTTACTTCAAGGAAAGGAAAGATAGGATTGGGCAATTCCGCCGGTTCTGGA
389093 GCTTAC
1 GCTTAC
389099 CTTATTATTA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 58 1.00
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (52 bp):
GCTTACTTCAAGGAAAGGAAAGATAGGATTGGGCAATTCCGCCGGTTCTGGA
Left flanking sequence: Indices 388489 -- 388988
GATTCGGCAAGAATCTCATTTTTTGGTAGTACGAAGGGGGAATTGGCCCAAAAATTGGATAGGGG
TCAAGACGCAGTCGGGCGCCAGCGGCTGACTCAAGTGCCCCCCGAACCGCGCGAAATGGTCGCCT
ATTACACGGCTCACTAACTCTGCCTGCGGTGGGGGTACCTATTATTCGTCGGCGGTCCGGCGCAC
CCCTACTCACTTAAAGGATGCTGCTTAATTACGAAGGAAATTCTTTCTTTTTCTTAATCTAGAGA
GTTCCCTTTCGTTAAGCGCATCGAGCCAGGAGTGGACATCATTATCATCTGCAGACAAATCCAGA
TCCTCTTTCATCATTAGCTTAGCTAAAGTGGAATAGTATGACTGGCTTTCCGGAAAATGAGACGA
AACCAGCTTTTTCGAAATGATCAACATGCGCTCAAAAAGACCTCCTAAACCCCCCTTGCCAAGAG
ATCGAGTTTAGTCTGAATTTGCTGTAGAAGTTGCTCCCGCTCGGG
Right flanking sequence: Indices 389099 -- 389598
CTTATTATTATGAAAAGGGGAAAGGGCTTTTTTTTTATAGAGGTTGAGTAAGGGGGCCGGGACTC
AAAATCCGCTGGAGGGAAGGGCAAGGAAAGACCACCTAAAGCAAGCAACGACCCTACATTAAGGA
ATTTGAAGAGGCCTTCGATTCAAAGGAGAAGGGAGCACGGATGTTATATCCTTGTGCGGGGCAAT
AAAATAAGTCCTTGCTTTCGTGGTCGGTCGAACTTAGCTATTGAAGCCCTGCCTGTACCCACCGG
GCTAGGGATGGTTCCCTGCATTGGACACCGGCCGTCACTCCATTCCCCAATAGTTGCTTTGTTAG
TGCTCATTCTTGTTGGATAAAGTTTCACTCTCGATGGCAAGGCTGGGGGCGGTAGTTCAATCCTT
GCCTTGCCGCGCTGACTCTTTTTTTATCAGTATTCGTCAGTATTCGGGATGAGCTTCGTTCCGGT
CTTGAACATCGGATAAAACAGGGGATGCCAGTACCATTCCCTAGC
Found at i:424512 original size:18 final size:18
Alignment explanation
Indices: 424486--424529 Score: 61
Period size: 19 Copynumber: 2.4 Consensus size: 18
424476 AAATAAACTC
* *
424486 AAGTCAAAACAAAAAAAA
1 AAGTAAAAAAAAAAAAAA
424504 AAGTAAAAAAAAAAAAAAA
1 AAGT-AAAAAAAAAAAAAA
424523 AAGTAAA
1 AAGTAAA
424530 GAAAGGGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 7 0.30
19 16 0.70
ACGTcount: A:0.82, C:0.05, G:0.07, T:0.07
Consensus pattern (18 bp):
AAGTAAAAAAAAAAAAAA
Left flanking sequence: Indices 423986 -- 424485
CCCCACTTCAAGTAGATGTGAAATCTACTTGAAGTGGGGAAATCTACAAATCCCCTTTTCTTTTC
GTAGGTGTAGAAGAGGTTTTTTGTTGTAATCCCCCTCTTTTTTTAAGGAATTGCTTAGTCGGCGA
GAAACAAGTAACGGTAGTAGATAGGATTCGATAAAAGAAGGAGAAAAATGCTTAAAAGGCTTCTC
TTCTAATAATCTATATTTGTGATGAGCGCATTGTTTTGGTCTATTAGATCCAAAGTTTTTTCTTG
ACCTAACTACAAGGAGAAAGCGCTTTCTATATATAAATAGAATATGGAAAGACAAAATGTAAAAT
CTAGAAAGGAAAAGATAATAGGAATTATTAGTTTTAGAATCGAATTGGATCGAAATAAAAATTTT
ATTTTTTCGACTGATTGTGCCATACCTTTTTTTATTCTCATTTGAAATATTATGGGAATGAACCT
ATTGCTGAATCTACTGAGTTAAAAATAATTAAAGTAAATAAACTC
Right flanking sequence: Indices 424530 -- 425029
GAAAGGGTATTCTAAGGTATAAGTTCACTCTTTATTCGAAACTAGAAAATGTATTAGATACAATA
AAAAAGAAAAAATCAAAATACAAAATAAAAATGGAAGCGATTCCCCAAGTTTGTTCCATATTAAT
TTAAAAAGAATTTCGTTTTTGGAATGCAGTTATATGACACAGTTTTGATTATTATTTTAATATTA
GTTTATTCAAGAGTTGCCCAAGGAATCTGTTGATTCGGAATCGTGAGATGGGTCCATGTCAAATG
TCAAAGATTATGAATTGATTTCTTTTTCTATCCCTGCCACTCTATTTTTGTTAGTACCTTCTAGA
AAGATTGATGAATCAAAAACAAAAACTTTCAATTGGTAGGGTATTTTTGCTTATCTTCGTATCTT
TTAAAAGTTGAAACTTAGGGAAGTGCTTTAGAAACATATGTATAAAAAGAAGATATTTCCTTTAG
CTCCTTCATGCCTACTATAACTAGTTATTTCGGTTTTCTACTAGC
Found at i:424516 original size:17 final size:18
Alignment explanation
Indices: 424486--424522 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
424476 AAATAAACTC
*
424486 AAGTCAAAACAAAAAAAA
1 AAGTCAAAAAAAAAAAAA
424504 AAGT-AAAAAAAAAAAAA
1 AAGTCAAAAAAAAAAAAA
424521 AA
1 AA
424523 AAGTAAAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.84, C:0.05, G:0.05, T:0.05
Consensus pattern (18 bp):
AAGTCAAAAAAAAAAAAA
Left flanking sequence: Indices 423986 -- 424485
CCCCACTTCAAGTAGATGTGAAATCTACTTGAAGTGGGGAAATCTACAAATCCCCTTTTCTTTTC
GTAGGTGTAGAAGAGGTTTTTTGTTGTAATCCCCCTCTTTTTTTAAGGAATTGCTTAGTCGGCGA
GAAACAAGTAACGGTAGTAGATAGGATTCGATAAAAGAAGGAGAAAAATGCTTAAAAGGCTTCTC
TTCTAATAATCTATATTTGTGATGAGCGCATTGTTTTGGTCTATTAGATCCAAAGTTTTTTCTTG
ACCTAACTACAAGGAGAAAGCGCTTTCTATATATAAATAGAATATGGAAAGACAAAATGTAAAAT
CTAGAAAGGAAAAGATAATAGGAATTATTAGTTTTAGAATCGAATTGGATCGAAATAAAAATTTT
ATTTTTTCGACTGATTGTGCCATACCTTTTTTTATTCTCATTTGAAATATTATGGGAATGAACCT
ATTGCTGAATCTACTGAGTTAAAAATAATTAAAGTAAATAAACTC
Right flanking sequence: Indices 424523 -- 425022
AAGTAAAGAAAGGGTATTCTAAGGTATAAGTTCACTCTTTATTCGAAACTAGAAAATGTATTAGA
TACAATAAAAAAGAAAAAATCAAAATACAAAATAAAAATGGAAGCGATTCCCCAAGTTTGTTCCA
TATTAATTTAAAAAGAATTTCGTTTTTGGAATGCAGTTATATGACACAGTTTTGATTATTATTTT
AATATTAGTTTATTCAAGAGTTGCCCAAGGAATCTGTTGATTCGGAATCGTGAGATGGGTCCATG
TCAAATGTCAAAGATTATGAATTGATTTCTTTTTCTATCCCTGCCACTCTATTTTTGTTAGTACC
TTCTAGAAAGATTGATGAATCAAAAACAAAAACTTTCAATTGGTAGGGTATTTTTGCTTATCTTC
GTATCTTTTAAAAGTTGAAACTTAGGGAAGTGCTTTAGAAACATATGTATAAAAAGAAGATATTT
CCTTTAGCTCCTTCATGCCTACTATAACTAGTTATTTCGGTTTTC
Found at i:424518 original size:19 final size:19
Alignment explanation
Indices: 424491--424529 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
424481 AACTCAAGTC
*
424491 AAAACAAAAAAAAAAGTAA
1 AAAAAAAAAAAAAAAGTAA
424510 AAAAAAAAAAAAAAAGTAA
1 AAAAAAAAAAAAAAAGTAA
424529 A
1 A
424530 GAAAGGGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.87, C:0.03, G:0.05, T:0.05
Consensus pattern (19 bp):
AAAAAAAAAAAAAAAGTAA
Left flanking sequence: Indices 423991 -- 424490
CTTCAAGTAGATGTGAAATCTACTTGAAGTGGGGAAATCTACAAATCCCCTTTTCTTTTCGTAGG
TGTAGAAGAGGTTTTTTGTTGTAATCCCCCTCTTTTTTTAAGGAATTGCTTAGTCGGCGAGAAAC
AAGTAACGGTAGTAGATAGGATTCGATAAAAGAAGGAGAAAAATGCTTAAAAGGCTTCTCTTCTA
ATAATCTATATTTGTGATGAGCGCATTGTTTTGGTCTATTAGATCCAAAGTTTTTTCTTGACCTA
ACTACAAGGAGAAAGCGCTTTCTATATATAAATAGAATATGGAAAGACAAAATGTAAAATCTAGA
AAGGAAAAGATAATAGGAATTATTAGTTTTAGAATCGAATTGGATCGAAATAAAAATTTTATTTT
TTCGACTGATTGTGCCATACCTTTTTTTATTCTCATTTGAAATATTATGGGAATGAACCTATTGC
TGAATCTACTGAGTTAAAAATAATTAAAGTAAATAAACTCAAGTC
Right flanking sequence: Indices 424530 -- 425029
GAAAGGGTATTCTAAGGTATAAGTTCACTCTTTATTCGAAACTAGAAAATGTATTAGATACAATA
AAAAAGAAAAAATCAAAATACAAAATAAAAATGGAAGCGATTCCCCAAGTTTGTTCCATATTAAT
TTAAAAAGAATTTCGTTTTTGGAATGCAGTTATATGACACAGTTTTGATTATTATTTTAATATTA
GTTTATTCAAGAGTTGCCCAAGGAATCTGTTGATTCGGAATCGTGAGATGGGTCCATGTCAAATG
TCAAAGATTATGAATTGATTTCTTTTTCTATCCCTGCCACTCTATTTTTGTTAGTACCTTCTAGA
AAGATTGATGAATCAAAAACAAAAACTTTCAATTGGTAGGGTATTTTTGCTTATCTTCGTATCTT
TTAAAAGTTGAAACTTAGGGAAGTGCTTTAGAAACATATGTATAAAAAGAAGATATTTCCTTTAG
CTCCTTCATGCCTACTATAACTAGTTATTTCGGTTTTCTACTAGC
Found at i:428922 original size:14 final size:16
Alignment explanation
Indices: 428883--428917 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
428873 TGCGGCTACT
428883 ATATAGAAAAATCAAA
1 ATATAGAAAAATCAAA
428899 ATATAGAAAAATCAAA
1 ATATAGAAAAATCAAA
428915 ATA
1 ATA
428918 GAAAAGGCGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.69, C:0.06, G:0.06, T:0.20
Consensus pattern (16 bp):
ATATAGAAAAATCAAA
Left flanking sequence: Indices 428383 -- 428882
GGGGAGAGTCTCGAAAGGCATACGAGTGCGCCTCTCGTAGACGAATACCGACTCAGTCCGCTCCT
ACTGCGCGGGAGTCTCAGCCGGTCGGTGTCGGGTCGGCCCCTAGGGCACTATTCGCCTTGGGAGT
GGTTCAGCCATCAAGCTACTTTGTGAGGTAGGGGACCAGACTGGTGACTGCTGCAGTTCTTGTCT
GCAGGGTATGTGACACCCCACAAGTTGAGTAGTGCTGAGCCAGGGGATCTTCCTTTGGATCGTTA
CAACGCTCGTTGAGCGGTTCAAGTAAAAGTAAATAGGTAAGAAGTGGAAAATCAATCCATCTCCA
TAGGAGACAAGATGAGCAAAAGACAGGAATCCCTTAATCCCGCAGAAAAGAACTCACTCCGGGGG
GAGTGAGGGGGGTATTCAAAAAGGGAAGCCGCAGGTTCTTGCTTTCCTTGTAGGAAAAGTCTTGC
TTTGGTATGGCATTAGAGAAAACTTGTTATGGTTATGCGGCTACT
Right flanking sequence: Indices 428918 -- 429417
GAAAAGGCGGGTGGGGCTTCAGGTTTTTCCTGAATAGAATCAATCAAAATTCCATCGATTATTAC
GTTGTAGCCAGTGATTGCCGGGGTCGGTGTGTGATCACCTTTGCCTTTGGTGAAGCAACCCTTCA
GCAGCTCTTCCCGCCCATGCGGAATACCCCCGGCCGGTTCCGCCGGGTAGGGCAGGAGCTGGTTT
GGGGAATCACGGGGCCTTATACTGGAGCCTCGATTCTGAAATGGAATGATTGAGAAAATCGAGAT
TTCATTTCAGAATGACCGAGGCCCTTTCACACCCGCTTGAAAACATGTCATGTGGCTGAATATAT
AAGGAGGTTCACACACCCTGGACAAATCCATCCTGTATCCTGTCAGCTTTACCGCTTGTCTTATT
TACCGTTTGCTTTAGCGGGTGGTTTATGTCTGGTCCTTTCGGGTCGCCTGACCTGGGCTGATGGC
GCTTCGTAACGGCGTTTTTGTTTTGTCTGGGGTCCTGTGGCTCTC
Found at i:461329 original size:15 final size:15
Alignment explanation
Indices: 461309--461339 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
461299 TATTGTTACT
461309 AGTATGCCGGATTTG
1 AGTATGCCGGATTTG
461324 AGTATGCCGGATTTG
1 AGTATGCCGGATTTG
461339 A
1 A
461340 TCACATCTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.13, G:0.32, T:0.32
Consensus pattern (15 bp):
AGTATGCCGGATTTG
Left flanking sequence: Indices 460809 -- 461308
TATTATCAAGCACCCTCCACTATTTCGGATAGTATTTATGGTTCTACCTTTTCCTTAGCAACTGG
CTTTCATGGTTTTCATGTGATTATAGGTACTCTTTTCTTGATCATATGTGGTATTCGCCAATATC
TTGGTCATCTGACCAAGGAGCATCACGTTGGCTTTGAAGCAGCTGCATGGTACTGGCATTTTGTA
GACGTGGTTCGGTTATTCCTATTTGTCTCTATCTATTGGTGGGGAGGTATATGAAGGAAGGAAAG
AGTGGTTTGAGGAATGCTGTGCGTCCTCCGAAGAAGTATAGTGGTAGGCACCAACTCTTGTCGAG
AGATGCTGCTCTTTCTCCGCATACCTATCTGCCGCCCTTGCCATCTTTGGGATCTAGTAATAGCG
ACTCTTTTCTTTCACTTGAATCACAGACCTTGCTAATGCCTTTGGTTGTAGGTAGTGCTCTTCTT
TTGGGATCTTCTCTATGTTCTTTGGATTTAGGTAGTATTGTTACT
Right flanking sequence: Indices 461340 -- 461839
TCACATCTGGCAATAGTAGTGTGACGCTCTCACAGAGTCCATCTGTTACGGATTTGATTGAGTTC
ACTGAAAGTAGTATCCCTACTAAGGTTCTAATCACTCAATCAATCTCGCTCTTCTTATTGGTACT
ATTGCATTGGCTGCAATTCTGACTGCAAAAGCTGTTGGTGGATGATTGCTACTCTTTGGCCGATT
CCTGCATTGTGGTAGAACCACCTTGTCATGAATCGAATTCTAGCCTCCAATAAGAATAATGGGGC
GAGGCTGTCGAATACGCAGCAAAACATGTCGCGGAGGATTTGCCTGCTAATCGGCAATTAGGCTT
CCTTCGAGATTGGATTAGAAAACTCGACGAGCCCTGCCATCGAGAAAGAGGTTTCGCGCTGGGGA
GCAGGAGAGGGCCCACCAGATTGGGCTCACAGAATACTTCAGGGCTGGAGTGAAGAGCCACAAAA
GCACCTGTCAGGAACTGTATAAAAAGGACCGAGAACTACATAAGG
Found at i:472292 original size:16 final size:14
Alignment explanation
Indices: 472271--472310 Score: 53
Period size: 16 Copynumber: 2.7 Consensus size: 14
472261 TCCCATGAAT
472271 CACTGCTTTCTGCAC
1 CACTGCTTTC-GCAC
472286 GCACTGCTTTCGCAC
1 -CACTGCTTTCGCAC
*
472301 CACGGCTTTC
1 CACTGCTTTC
472311 CGCAAAATAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 9 0.39
15 4 0.17
16 10 0.43
ACGTcount: A:0.12, C:0.40, G:0.17, T:0.30
Consensus pattern (14 bp):
CACTGCTTTCGCAC
Left flanking sequence: Indices 471771 -- 472270
TGAAAGAAGGAGGGAATATCGCTAAAACCGAGACTCAGGTCAAGGAGATCAGATAGACGAAAAGT
ACTTTCCCTCGTATGGAGAACAAATCCTATCTCTCTAGTTTCGGAACTCTTGGTAAGCTAAGTTT
CTTTGAATATACCTTTCAAGAAAAGACCTTTCTTTTACGCCTTATTTGTTATGAAAGCGGAACCC
GCTCGGAAACCAACTAAATCGATTCAGTGCTTGGATTAGGTCAGGGTAGAGAACAGGTAAGGGCG
GTAGGCTTTTCACTTTAGCCGTTCTTATAAAAGGCTAGTTTAAAGCTTTTTGGATCCCCTCTTTC
TAGTTAGGGAGGCCTTAGATGAAAGCCTCTTCAGTAAACTCTTTCCATTGATCGTCACGCAAGAC
GCTTTTCTGGCGCAAACCTAGTAGTTATTTGTCCTGCCGATCTTGGGTGAACTGATGCTCCAAGA
CCAAGAGTTCTCACAGCCAAAGTGAAGCAGCTCCCTCCCATGAAT
Right flanking sequence: Indices 472311 -- 472810
CGCAAAATAGAGAAAACAAACTCACTCTCAAGTGTGGATCCGGCTGTATGGAATTAGTGCAGAAT
ATTGGCATCCCCGCCTCCTCATGGAGATGGCTAGGGGTGTCGGAACGCCTCTTCAACTTGACCCC
ATGACCAAAGAGGGGAATTTCGATTTTGATGCAAGGATTCTTGTAGATGTTGATCTCTCCAAACC
CCTTCCTGAGTATATCATGATTGAACGTGAAGGATATGGATTTCCTGTTGATGTGGTTTATGAAA
AGCTCCCTCCGCTCTGCGATTTTTGTGGGCTTATTGGGCACAACTCCTCAGCCTGTAGACAGAAC
AATAAAAAGAAAGACTCTGAGCCTGCGAAGCCGAAGGTCAAACAGATTTATCGTGTCAAGGCTCC
TATCTCCGAGATCCCCGAAAGTACCCAGGAACCAGGTAACCATACGAATACCAATCCTTTAACTG
AGAATCTCCAAATTATTGATAGGGTTGTTGATCCGGATACTCATG
Found at i:542104 original size:20 final size:19
Alignment explanation
Indices: 542068--542109 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
542058 GACGATCTGG
*
542068 CTAATTCTATATACTTCTAT
1 CTAATTATATATACTTCT-T
542088 CTAATTATATACT-CTTCTT
1 CTAATTATATA-TACTTCTT
542107 CTA
1 CTA
542110 TTAGAAAGGC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 4 0.20
20 15 0.75
21 1 0.05
ACGTcount: A:0.29, C:0.21, G:0.00, T:0.50
Consensus pattern (19 bp):
CTAATTATATATACTTCTT
Left flanking sequence: Indices 541568 -- 542067
ATAACAAGAATAAAGTAGCAATTCAGTTTCAAATGGTTTGAGCTTGGAAGCAACCTGCTATCTAT
CGATAGGCGAAAACAGACTGCTATTGGCTGCTTCGCCTATCTATTCTATTATGGCCGGCTTGGAG
ACATCAAAGGAAGACCATCATCTCTATCCGGGTACGATCATAGCTTCATTCATTCGTTGAACCTT
AGGGATTTAGCATTGAGGTCAATCACCACACCACCTCTATCATACATACGACATTCCATTCCGCG
AGAGTGCATGGTCAACACACACCTAAAGCGCCTAGGTTCCGCTTGCAGCCAATACAACCACAACC
TAACTTGCACGAGATTCAACAACCGAAACTACTGGTAGTCCCGAGGGGACGGCATCCTCCTATAA
TAGTTAGCAATACTGAACAAGCGAGTCATCAGTCCGCCTTTAAAAAAAAAAAAGGAACTCGCTAG
GCCTTCGGAACAAAGGTGATTCTGTTCATGCTTCAGACGATCTGG
Right flanking sequence: Indices 542110 -- 542609
TTAGAAAGGCGAAACTATAGGCCTGTTTTAGCGCGTTTCCAAAGGTAACCGGTTAGGTTTACTTT
GGAAACGCTACTAAAGACCGGGTAAAGAATGAAAAACGTCCGCTAACGCCCACGGGATAAGATCT
TTTTTAGATCAGCAACGAATGTCTTGTATCTATGAAGAAAGATTTCTCCCCAAGTTCAGACCCTA
AATGCCATACGTTGCTGAAGGCGATTCACGAGAGAATCGCGCATAGTTCCGTTTGACCGAGATGT
GAATGCCCGTGATCTGCTCGGTATAGTGATGGATTTCATGGCCGACGTCTAACCGGCACGAATAC
GCCGACATGAAACGAGTTCCCCGCGGAGCATTTTTTTTTTTCGTCCTCGGACGTTCGGACGTTTT
GTTCGATTCCGGCACTTGCGTTCTCATGCCCGGAACCCTCGCGATTAATAAAAAAAAAAGTCAAA
GCGAGAAAAAGACGACGAAACCCTTTTTTCTTTCTTTCTCAGCCG
Found at i:600555 original size:11 final size:11
Alignment explanation
Indices: 600534--600562 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
600524 TTGCATTACC
600534 AAAAG-AAAAA
1 AAAAGAAAAAA
600544 AAAAGAAAAAA
1 AAAAGAAAAAA
600555 AAAAGAAA
1 AAAAGAAA
600563 GATTACTCGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 5 0.28
11 13 0.72
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (11 bp):
AAAAGAAAAAA
Left flanking sequence: Indices 600034 -- 600533
AGGCTACCTCTCCTATCCGCTGCTCTACAAGGTCTACTTTCTTCTTCCTTCAGACCGGGCTAAGC
CTTTAGTTTAAGTGGGTTTGGGCTAGGTCGTTGCGATCCTACCACCTCTTGGCAAAGTAGGCTGA
TGGGCAAGCCCCCTCTTTTCGCAATGGTGTGGGGCGGAGGCTGTTGCCCCGTGGCCAACTCGAAG
GGGCTGAAGTTCGTTCGACGCGGAGCTCTTTGGTTGTTAAGTTATAGCAGCACTGAGCAACATCC
AACAGCTCCAGTCCTTCTGGTTTGCACTAAAGTGCCTTAAGTAGCCCTCGAGGAGTCCGTTTATT
CTCTCCGTCTGAGCTTTCAAAGATATACCGACGTAGGTATCTTACCATCAGATACCGACAGTCGT
CTTCTAACATTACCGACCTTTAAATATCGGGTTTTCATCAATTTCACATAACATAAAAAATTTTC
ATCATAAGAAAGAACCTGATTTCCAACCTCTTGCATTGCATTACC
Right flanking sequence: Indices 600563 -- 601062
GATTACTCGGAATGAACCTTTCTCGGTGGAGGAAAGGAATAGCGATGGATTCCTATGGAGCATCC
AGGAACAAGAAGATTCAATTGGACGACGAATTCCTACGTGGTCCAAGAAAATAAAAGGTTCGCTT
CCACGATTTCATCTATATCGAATCTTAATATCAGAATAGCTTATATAGTCATGATTCAATTCAGG
TCCACTGACTTTTTCTTTCTTTCTCATTTTTCGAATCTGATTGGAACAATGGAGAAGTAGGAAGA
CTTTCTCGATTCATAATGGGTATCTAGAATATCCATGTCCCAAGACATAAAATATGAATAATAAA
ACATGAGGAGGAGGAGGAGTATACCCTGAAGTATGAGTTTACTGCATTTATATATATTAGAAATA
TATCTTTAATTAGAATAATCTAGTATCTCATTCGTGTCTCTGTTACAACACGGCGAAACGAGGTT
CGAATGAAAGAAAAAATAATAAGAATTTTTAGGCCGAATTTTCCT
Found at i:603275 original size:39 final size:39
Alignment explanation
Indices: 603232--603306 Score: 123
Period size: 39 Copynumber: 1.9 Consensus size: 39
603222 GTTTTGAAAA
* * *
603232 GGTTTGACCGAGGATCAAAAAGCCTGTTGCAGAAATAAT
1 GGTTTGACCGAGGAACAAAAAACCTGTTGAAGAAATAAT
603271 GGTTTGACCGAGGAACAAAAAACCTGTTGAAGAAAT
1 GGTTTGACCGAGGAACAAAAAACCTGTTGAAGAAAT
603307 GACGTAAGTA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.39, C:0.15, G:0.25, T:0.21
Consensus pattern (39 bp):
GGTTTGACCGAGGAACAAAAAACCTGTTGAAGAAATAAT
Left flanking sequence: Indices 602732 -- 603231
CTTTTATGCCGATCTCAGCAAGCAGTACCGGAAACTGATGAACCATACTAGATGATCGAACCGGC
CCTCGGCAAGAATCAGAGCCAATTGTGAAAACCAGAGTCAAGGAATAGGAGTTGAGTGAAGAAGC
TCAGTCAAAGGGGAAGAAAGCACAGAAGAAGAAGTGTAAGACTGTACTAACCAACAACTACTATT
TCCTGTTCGTGCATTCCTGCACTACTCCTCTACCGGAACTGCTTTCACTACTACTTCCTGAGCCC
TGGGACTAACTCACCAACTACCGGAACTACTTGACTATTCACTGCTAACTCCTCACTTTTTCACT
CAAGTCCCAAGTCCAAACCAAAAAACAAATAAAAAATCACAACATCCCAACTACAAAGCCAAAAA
ACAAGGAAATTCGAGCTATCAGACAGCGTCTCAAGTATCTTTCTCTATCACAATCACCCCCAAAA
ACGGGTTTTCGAGCACTATTTTGCCATTTCTGTGGGTTTTGAAAA
Right flanking sequence: Indices 603307 -- 603806
GACGTAAGTAATCACAGAAAGACCTCAAGGTCAGCTTGTTATTCGTTCTGCTCGGTGCCCTAAAA
CATCCCAATCGAGGGGAAACTAAGGGGTTAATAGCTTCTACAGTCCGAGTCTGTAGGTAAAACCG
AGAGGCCTAGCTTACTAGGTCGAGCGTTCGAAAACTTGCTGAAAAGCTCTCCCCGTGCAGCGAAA
TCCAGGCTCAGAGATGGGTAGCGGATGAATGCTTTGTCGTTCGCCGTAGGAATCCGCAAGGAGAG
GTCCGAAAGGTGACAAGACGGCTTGCAGCGAGGGCACCCTAATGCTAAGCTTTTGGCCTTTGTTT
GCCTGTCTACCTAGGGTTACCTTGCCTTGCATCATCCCATCCTTCCATAGAAGATGTTATGTTTA
AGAATAAAATGGGCGCTAGTTCCACTTTTTCTTTCGTTTGCTAAGTAAATGTATTGAACTCGCCA
AGAAGGTTCCGATTACAAGTATGGACCTCCTTGCCTCCCAGTCCT
Found at i:604782 original size:20 final size:20
Alignment explanation
Indices: 604753--604790 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
604743 CTCTCGCGTC
604753 TTTGTCAATTTGTTGATTAG
1 TTTGTCAATTTGTTGATTAG
* *
604773 TTTGTTAATTTTTTGATT
1 TTTGTCAATTTGTTGATT
604791 GTCCAGTCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.03, G:0.16, T:0.63
Consensus pattern (20 bp):
TTTGTCAATTTGTTGATTAG
Left flanking sequence: Indices 604253 -- 604752
AAAAGTAGCAAATTTGTCTTAGAAATCAGTCTTTGGGAATATAGAAAGATTGAAACATTCTCGTG
TCCATAGGTAAACTGAGTGGAGGTTTGATCTTAAATAGACAAGTTCCCGAAAGTGACTCTTTTCC
TTAATTTCCCGCGTCGACGTGAAAACGACGGGTTCGTATCCTTGACCGAAATAGAATATAGAAAG
AAAATAAGAGTGATCTTGTCTTGCTCTACCTTTTTTTTGGTTTAGCCAAAAATAGAAGCTTTCTC
GTCGGGAATCGGAATTAAAGGAGCTCACGTAGACAGCTAGCGTCGAAATGAGAAATCCTTGGTCT
TTACTCCCCCCTCTTTTCGGGAAAGCCGATCATGCTGCGCCCTGGACTATCGACAGATGAGGTGG
GGATCTCTTTGCCTTTCTCTCGTCTGCACCTCAACTGAATAGACTGATTGTCCTCTGAGGCAAGG
TACTCAGTACCCAAGCTAACGTGATCTGGGAACAGCTCTCGCGTC
Right flanking sequence: Indices 604791 -- 605290
GTCCAGTCTTTCATTTCCCTACTTTAGTAAGCAGTTTGTTGTTGTTTTAAAATGGGGCTAAATAT
GCATCCTTCGGGATTTGATTGTTGTTGTCAAGATCTATCTTCTGCTCTTGCTTTTGCTTTTGCTT
GTGTTGAAGATGTTTGGTGTGCTCAGGTGCTTCTATTTTCCTTGTGATTTTTAAGTCTAGTTCCG
CATTTTCATCACTGAAGACGGTCACAACTTCTTAATTCTTAAGAAGTTGAGGGAGTTGGTGAGTT
TCCGTTGACAATCTACTTTGATTCGAAAGTCCGTTCTCGCCCTACAAGTGGAAGTTGGACTCAAG
GCCGAGACAGAAAGATCTTATCGGAATCTTTTCATTCTCCTGTTCTCGCCTAAAAACTGCGCCTC
GACCGGCGCCGAAGCTGAGGATTTGTCTACCGCCTCTGGCCGAAATAGGTTCTGGGTCCATGTTT
CAGTAGGGCCGCTACTCTGGGACATAGATCTTGGCGAAAGCCCCC
Found at i:608674 original size:6 final size:6
Alignment explanation
Indices: 608663--608712 Score: 100
Period size: 6 Copynumber: 8.3 Consensus size: 6
608653 AATTCCACTT
608663 TATAAG TATAAG TATAAG TATAAG TATAAG TATAAG TATAAG TATAAG
1 TATAAG TATAAG TATAAG TATAAG TATAAG TATAAG TATAAG TATAAG
608711 TA
1 TA
608713 AGGCTCGGGA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.16, T:0.34
Consensus pattern (6 bp):
TATAAG
Left flanking sequence: Indices 608163 -- 608662
TTTTCCCGAACCAAAGGATCCAGGTTCTCTTGAAACAAAATATCCTGATCCCTCAGCATCAGGCG
ATGTCTCAGTCTCATCTGCACCCAAACCAGAATTTTACTCCGAAGAGGGACAACTCACTTTTCCA
TAATCACCCGACAAGTCGAATCCATATCATCAGAATAGAGGGCATAGGACTCTTTGCCCTACTAT
GAACTAGGATCAGAAAAGGTTGGCTCATAACAGAAACTCAAAGACGCCAGAAAAGCACACTTAAG
GCGGTTCATCAGGTTGTTCAGAGGCTCCTTCCTGTCCCGCCCTGCTTCAACATATCAGTTGTCAT
TAGGAACTTCTTTCTTTCCTTTCTCTTAACGAGAAGCAATTTGTGTTTGTGGTCCTTGCTAAACG
CGGGTTAAAAGCTATTTTTTCGCCCCTATCGAGTAAGTTTGTCGCTTCTTTTTTCGGAATGTACT
GAAAAGCTCAACGCGCTTGTATCTAGGTCGGGGGTAATTCCACTT
Right flanking sequence: Indices 608713 -- 609212
AGGCTCGGGATATGGTTCTCTTATGGGGAATAGGCTGAAACAGCAACAGGCAACCAAGACTTATG
AAGTGCGTTCAGGCTCACTTTAATCAACAACTGAAAGAGTAATCTTTCTACTTATTCTCCATCCT
TACTGTTACTATAACCGCTAATAGAATAGATCCATGGGGTTAGTTTAGAAGTAACTAAAGGGTAA
CCACTAAAGGGTTAAGCTGGCTCAGAAGAAAGTCTAGTGGGGCATGGTTTATAAGGTAGGTTACC
CGCTCGTAAGAGGCAGTCTAACTTTTTTAGGTAGAAAGAGCGGAAGAAGTTTCTTCATTCTATAA
ATCTTGGTTATGGTATTAGAATGCAGAATAAGAGACTTTCATTGGTCTTCAGTCCGCCATTCCAA
GGTAAATGCCTGGCTATTCAAGCTAGCGTGGTAACGAGACGGTGAGTGAAAGTTAATCGGTTAAC
GAGACTGAGGAAGATGCCTAGCTAGTTTTGAACCAGAGCAGGGAA
Found at i:609690 original size:14 final size:14
Alignment explanation
Indices: 609671--609720 Score: 66
Period size: 14 Copynumber: 3.6 Consensus size: 14
609661 CGGAATGCGA
*
609671 AGTACCAACTCCGG
1 AGTACCAAATCCGG
*
609685 AGTACCAAATCCGA
1 AGTACCAAATCCGG
*
609699 AGTCCCAAATCCGG
1 AGTACCAAATCCGG
609713 AGT-CCAAA
1 AGTACCAAA
609721 AAGGCAAACA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
13 5 0.16
14 27 0.84
ACGTcount: A:0.36, C:0.32, G:0.18, T:0.14
Consensus pattern (14 bp):
AGTACCAAATCCGG
Left flanking sequence: Indices 609171 -- 609670
ACTGAGGAAGATGCCTAGCTAGTTTTGAACCAGAGCAGGGAAGTGAAATAGCTAAATCGGAAGTT
AAGCCCTCGATTAGCAAAGAGCTCGTTGGGGGAAGGTAGGTGGTGGGGAAGCGGAACAGCTGTGT
TGGTTCAATCGGGAAATGGCCGATCATGCTTTTAGGGTTTCAGATTCAAGCAGCTCGTTGCTACA
CGATCAGTCAAGCTAAGCTAAGAGAGAAAAGCGGCAGTCCTTCCAATCAAGCAAGTTCCCAAATC
CCCAGTTCCTGAGTTCCCAATTCCGCAGACCTACTGAACCTATCTTCCTAACCTATCTGACCTAT
CGGTTTATCTGTGATCACTGTCGAATATCTCCCGATATGTCGTATATGATCACAGAACACCTTTC
GGTCAGGCCAGAGCTGACTGGGAAGTACCAAAGTCCCAACTCCTCAGTTCCAAAGCTGAAAGCAG
AATGCGAAGTACCAAATCCAGCTGAAAGCCGAAAGCGGAATGCGA
Right flanking sequence: Indices 609721 -- 610220
AAGGCAAACAAGAAATTGCGTAAGTAATAACAGAAACACCTACCGCTCATAAGAAAGCTCTCCTT
GTTCGTATGTTATCCGACGAGGTGAGTTGGTGGTAGGTGACAAGAAGGCTGTTATTGTTGTTGGC
AGACCAAACCAACAACGCTTTTTTCCCTTGAGAAAGGAACTAAGCATGCCATGGTTATACTCGAT
GGCTCCATACCGTGATACGATATATATGTGCTGGTTCTCTTTTCAAAGCTAGTTTCAACACTAAC
TGAAAACCAGACCAGTAGTATATATAATACTAGTATCCCGGGTGGTGATGAGAGGTAACCGGCCC
TCGATGTTAACTGCAATTACGATGCTTAACACAGGCAGGTAGTAGGTAACAGCTAGGTATGTAGG
TAGTAGGTAATAGCTAGTAGTAATACTGGTAGCGGGGAGGCTATATATTACCAAATAGGTCATAT
ATTTTCTTTGTTACTGTTCCTTGCAATTGGTAAATGTTAATTGGT
Found at i:609711 original size:28 final size:27
Alignment explanation
Indices: 609668--609720 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
609658 AAGCGGAATG
*
609668 CGAAGTACCAACTCCGGAGTACCAAATC
1 CGAAGTACCAAATCCGGAGT-CCAAATC
*
609696 CGAAGTCCCAAATCCGGAGTCCAAA
1 CGAAGTACCAAATCCGGAGTCCAAA
609721 AAGGCAAACA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 5 0.22
28 18 0.78
ACGTcount: A:0.36, C:0.32, G:0.19, T:0.13
Consensus pattern (27 bp):
CGAAGTACCAAATCCGGAGTCCAAATC
Left flanking sequence: Indices 609168 -- 609667
GAGACTGAGGAAGATGCCTAGCTAGTTTTGAACCAGAGCAGGGAAGTGAAATAGCTAAATCGGAA
GTTAAGCCCTCGATTAGCAAAGAGCTCGTTGGGGGAAGGTAGGTGGTGGGGAAGCGGAACAGCTG
TGTTGGTTCAATCGGGAAATGGCCGATCATGCTTTTAGGGTTTCAGATTCAAGCAGCTCGTTGCT
ACACGATCAGTCAAGCTAAGCTAAGAGAGAAAAGCGGCAGTCCTTCCAATCAAGCAAGTTCCCAA
ATCCCCAGTTCCTGAGTTCCCAATTCCGCAGACCTACTGAACCTATCTTCCTAACCTATCTGACC
TATCGGTTTATCTGTGATCACTGTCGAATATCTCCCGATATGTCGTATATGATCACAGAACACCT
TTCGGTCAGGCCAGAGCTGACTGGGAAGTACCAAAGTCCCAACTCCTCAGTTCCAAAGCTGAAAG
CAGAATGCGAAGTACCAAATCCAGCTGAAAGCCGAAAGCGGAATG
Right flanking sequence: Indices 609721 -- 610220
AAGGCAAACAAGAAATTGCGTAAGTAATAACAGAAACACCTACCGCTCATAAGAAAGCTCTCCTT
GTTCGTATGTTATCCGACGAGGTGAGTTGGTGGTAGGTGACAAGAAGGCTGTTATTGTTGTTGGC
AGACCAAACCAACAACGCTTTTTTCCCTTGAGAAAGGAACTAAGCATGCCATGGTTATACTCGAT
GGCTCCATACCGTGATACGATATATATGTGCTGGTTCTCTTTTCAAAGCTAGTTTCAACACTAAC
TGAAAACCAGACCAGTAGTATATATAATACTAGTATCCCGGGTGGTGATGAGAGGTAACCGGCCC
TCGATGTTAACTGCAATTACGATGCTTAACACAGGCAGGTAGTAGGTAACAGCTAGGTATGTAGG
TAGTAGGTAATAGCTAGTAGTAATACTGGTAGCGGGGAGGCTATATATTACCAAATAGGTCATAT
ATTTTCTTTGTTACTGTTCCTTGCAATTGGTAAATGTTAATTGGT
Found at i:610539 original size:20 final size:20
Alignment explanation
Indices: 610510--610548 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
610500 TTCCCTGTTT
*
610510 GTTCCTGGATGTATTGGTTA
1 GTTCCCGGATGTATTGGTTA
610530 GTTCCCGGATGTATTGGTT
1 GTTCCCGGATGTATTGGTT
610549 CTTCCCTGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.13, C:0.13, G:0.31, T:0.44
Consensus pattern (20 bp):
GTTCCCGGATGTATTGGTTA
Left flanking sequence: Indices 610010 -- 610509
CTAGTATCCCGGGTGGTGATGAGAGGTAACCGGCCCTCGATGTTAACTGCAATTACGATGCTTAA
CACAGGCAGGTAGTAGGTAACAGCTAGGTATGTAGGTAGTAGGTAATAGCTAGTAGTAATACTGG
TAGCGGGGAGGCTATATATTACCAAATAGGTCATATATTTTCTTTGTTACTGTTCCTTGCAATTG
GTAAATGTTAATTGGTTCTTGGTTAGTTATCCCAGGTCCGGAAACAGGAAAGAGTTGGGAAAGTT
ATCCCAGCTTCCCCGGATGGGTTAGTGATTCCCTCCTGGTATGTGTTCTCCTGGTATTTGTGTAT
TTGGTATTTCCGGTTAGTGATTATTATTTGTATTTGTTCCTGGGATTTGTATTTCCCAGGTAGTT
TCTAATTCTTAGTTGTTGCTTTTTCTTCAGGTAGTTTATTCACTTGCACTTGGTACCTCTCCAGT
TCTGTATTGGTTCTTCCCGGTTAGCTCCTGGTATTTTCCCTGTTT
Right flanking sequence: Indices 610549 -- 611048
CTTCCCTGTTAGGTATTGGATTGGATTCTTATTTGTATTTGCCTGGTAGTTAGTATTTACCTGTT
AGTTGGTATTCCCTGGAAGTTGCAGTTTCTATTTGTATTTGGTTCTTGGTTCCTTGCTTGGTTAG
CGGTTTTGGTATTTCCCATTTGCCAGGTAGTTGGTATTCCCTGGCAATTTCATTATTATTTTTGT
ATTTCTACTTCCCCGTTTGGGAATTCCCTGTTAGCTCCTGGTATTTCTTTATCCCAGGTCAGGAG
AAAGAGTTGTTAAAGTTCTCCCTGGTTCCCAGTCCCAGGTATTGGTTTCTTCCAGGTATTGTATT
TGTTACTTGTTCCCCGTTGTTACTCGGTATTGTATTGGTTATTGGTTAGTTGTCTTGTTGTTTTC
CTGTACGGGAATGAAGTGAGGAGTTGTTGTATTTGTTCCAGGTAAATGTTCCGGGTATTGGTTGT
TAGCAGTTCCTGCATTGCTGGCTGTATTGGTTGTTTGTTTTGTTA
Found at i:610606 original size:18 final size:18
Alignment explanation
Indices: 610583--610623 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
610573 ATTCTTATTT
*
610583 GTATTTGCCTGGTAGTTA
1 GTATTTACCTGGTAGTTA
* *
610601 GTATTTACCTGTTAGTTG
1 GTATTTACCTGGTAGTTA
610619 GTATT
1 GTATT
610624 CCCTGGAAGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.17, C:0.10, G:0.24, T:0.49
Consensus pattern (18 bp):
GTATTTACCTGGTAGTTA
Left flanking sequence: Indices 610083 -- 610582
GGTAGTAGGTAACAGCTAGGTATGTAGGTAGTAGGTAATAGCTAGTAGTAATACTGGTAGCGGGG
AGGCTATATATTACCAAATAGGTCATATATTTTCTTTGTTACTGTTCCTTGCAATTGGTAAATGT
TAATTGGTTCTTGGTTAGTTATCCCAGGTCCGGAAACAGGAAAGAGTTGGGAAAGTTATCCCAGC
TTCCCCGGATGGGTTAGTGATTCCCTCCTGGTATGTGTTCTCCTGGTATTTGTGTATTTGGTATT
TCCGGTTAGTGATTATTATTTGTATTTGTTCCTGGGATTTGTATTTCCCAGGTAGTTTCTAATTC
TTAGTTGTTGCTTTTTCTTCAGGTAGTTTATTCACTTGCACTTGGTACCTCTCCAGTTCTGTATT
GGTTCTTCCCGGTTAGCTCCTGGTATTTTCCCTGTTTGTTCCTGGATGTATTGGTTAGTTCCCGG
ATGTATTGGTTCTTCCCTGTTAGGTATTGGATTGGATTCTTATTT
Right flanking sequence: Indices 610624 -- 611123
CCCTGGAAGTTGCAGTTTCTATTTGTATTTGGTTCTTGGTTCCTTGCTTGGTTAGCGGTTTTGGT
ATTTCCCATTTGCCAGGTAGTTGGTATTCCCTGGCAATTTCATTATTATTTTTGTATTTCTACTT
CCCCGTTTGGGAATTCCCTGTTAGCTCCTGGTATTTCTTTATCCCAGGTCAGGAGAAAGAGTTGT
TAAAGTTCTCCCTGGTTCCCAGTCCCAGGTATTGGTTTCTTCCAGGTATTGTATTTGTTACTTGT
TCCCCGTTGTTACTCGGTATTGTATTGGTTATTGGTTAGTTGTCTTGTTGTTTTCCTGTACGGGA
ATGAAGTGAGGAGTTGTTGTATTTGTTCCAGGTAAATGTTCCGGGTATTGGTTGTTAGCAGTTCC
TGCATTGCTGGCTGTATTGGTTGTTTGTTTTGTTATCTGTTCCTGGTGTAAGTAGTCAGTACTTG
GTACTTGTTAGTTCGAGTTGGTAATTGTTAGTCTTACTCGGTAGT
Found at i:611132 original size:27 final size:27
Alignment explanation
Indices: 611094--611160 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 27
611084 TGTTAGTTCG
611094 AGTTGGTAATTGTTAGTCT-TACTCGGT
1 AGTTGGTAATTGTTAGT-TGTACTCGGT
*
611121 AGTTGGTAATTGTTAGTTGTCCTCGGT
1 AGTTGGTAATTGTTAGTTGTACTCGGT
* *
611148 ACTTGGTAGTTGT
1 AGTTGGTAATTGT
611161 AATTGGTAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
26 1 0.03
27 35 0.97
ACGTcount: A:0.16, C:0.10, G:0.28, T:0.45
Consensus pattern (27 bp):
AGTTGGTAATTGTTAGTTGTACTCGGT
Left flanking sequence: Indices 610594 -- 611093
GTAGTTAGTATTTACCTGTTAGTTGGTATTCCCTGGAAGTTGCAGTTTCTATTTGTATTTGGTTC
TTGGTTCCTTGCTTGGTTAGCGGTTTTGGTATTTCCCATTTGCCAGGTAGTTGGTATTCCCTGGC
AATTTCATTATTATTTTTGTATTTCTACTTCCCCGTTTGGGAATTCCCTGTTAGCTCCTGGTATT
TCTTTATCCCAGGTCAGGAGAAAGAGTTGTTAAAGTTCTCCCTGGTTCCCAGTCCCAGGTATTGG
TTTCTTCCAGGTATTGTATTTGTTACTTGTTCCCCGTTGTTACTCGGTATTGTATTGGTTATTGG
TTAGTTGTCTTGTTGTTTTCCTGTACGGGAATGAAGTGAGGAGTTGTTGTATTTGTTCCAGGTAA
ATGTTCCGGGTATTGGTTGTTAGCAGTTCCTGCATTGCTGGCTGTATTGGTTGTTTGTTTTGTTA
TCTGTTCCTGGTGTAAGTAGTCAGTACTTGGTACTTGTTAGTTCG
Right flanking sequence: Indices 611161 -- 611660
AATTGGTAATTCGGTACTTGTGACTTGGTCGTTGTAGTCGGTAGTAGTTCCTGGTTAGGTTGTTA
CCTGGTTAGGTTGTTACCTGGTTAGGTTGTTACTGGTTAGGTTGTGTATTTGGCAGTTGTTGTTG
TTTGTTAGTTGTTGCTTGTCTACACAGTTTGAATTTGATTTGGAAAGTGCGTAATAGACTCTTGT
TTGACAATATCCGAGTTAGCATTCATCAAGCCTTGGCAGCCTGCAAAGCCGAAATTCTTTTCATT
TGTAAGTTATGTCCGGGCTACATTGGTTCCCTTCATGATTCAATTCTTATTCGAAACTTGGGAAT
TAATCCTCTCTACAGAAGAGCTCCTCGTATTACCTCAGTATTTTGGCATCCACCGGTTCTCCCTT
GGGTGAAAATCAATACGGATGGTTTAGTCCGGGAAAGCTAGTAAATTGCCGTTTTCCTCGGCACC
AGCCAACACGGTCTCGATGTTGAGAGTCACATCCTTGGCTCGAGC
Found at i:611231 original size:16 final size:16
Alignment explanation
Indices: 611210--611270 Score: 115
Period size: 16 Copynumber: 3.9 Consensus size: 16
611200 GGTAGTAGTT
611210 CCTGGTTAGGTTGTTA
1 CCTGGTTAGGTTGTTA
611226 CCTGGTTAGGTTGTTA
1 CCTGGTTAGGTTGTTA
611242 CCTGGTTAGGTTGTTA
1 CCTGGTTAGGTTGTTA
611258 -CTGGTTAGGTTGT
1 CCTGGTTAGGTTGT
611271 GTATTTGGCA
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
15 13 0.29
16 32 0.71
ACGTcount: A:0.11, C:0.11, G:0.33, T:0.44
Consensus pattern (16 bp):
CCTGGTTAGGTTGTTA
Left flanking sequence: Indices 610710 -- 611209
TGGTATTCCCTGGCAATTTCATTATTATTTTTGTATTTCTACTTCCCCGTTTGGGAATTCCCTGT
TAGCTCCTGGTATTTCTTTATCCCAGGTCAGGAGAAAGAGTTGTTAAAGTTCTCCCTGGTTCCCA
GTCCCAGGTATTGGTTTCTTCCAGGTATTGTATTTGTTACTTGTTCCCCGTTGTTACTCGGTATT
GTATTGGTTATTGGTTAGTTGTCTTGTTGTTTTCCTGTACGGGAATGAAGTGAGGAGTTGTTGTA
TTTGTTCCAGGTAAATGTTCCGGGTATTGGTTGTTAGCAGTTCCTGCATTGCTGGCTGTATTGGT
TGTTTGTTTTGTTATCTGTTCCTGGTGTAAGTAGTCAGTACTTGGTACTTGTTAGTTCGAGTTGG
TAATTGTTAGTCTTACTCGGTAGTTGGTAATTGTTAGTTGTCCTCGGTACTTGGTAGTTGTAATT
GGTAATTCGGTACTTGTGACTTGGTCGTTGTAGTCGGTAGTAGTT
Right flanking sequence: Indices 611271 -- 611770
GTATTTGGCAGTTGTTGTTGTTTGTTAGTTGTTGCTTGTCTACACAGTTTGAATTTGATTTGGAA
AGTGCGTAATAGACTCTTGTTTGACAATATCCGAGTTAGCATTCATCAAGCCTTGGCAGCCTGCA
AAGCCGAAATTCTTTTCATTTGTAAGTTATGTCCGGGCTACATTGGTTCCCTTCATGATTCAATT
CTTATTCGAAACTTGGGAATTAATCCTCTCTACAGAAGAGCTCCTCGTATTACCTCAGTATTTTG
GCATCCACCGGTTCTCCCTTGGGTGAAAATCAATACGGATGGTTTAGTCCGGGAAAGCTAGTAAA
TTGCCGTTTTCCTCGGCACCAGCCAACACGGTCTCGATGTTGAGAGTCACATCCTTGGCTCGAGC
GAAGAGCGACGGATCTTTTGTATTCTGGATAGGCGATTTTGACCGGGTAAGGAAGGTGTATATCT
AATCAACCGACTCCAATCGGACACCTTAAATAAGGGTAAAGACCC
Found at i:627708 original size:14 final size:14
Alignment explanation
Indices: 627689--627715 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
627679 TAGACCGTAC
627689 AGCTGATATGCGAT
1 AGCTGATATGCGAT
627703 AGCTGATATGCGA
1 AGCTGATATGCGA
627716 CTCCTTTTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.30, T:0.26
Consensus pattern (14 bp):
AGCTGATATGCGAT
Left flanking sequence: Indices 627189 -- 627688
GCTTGGCTTTCTTTCCGATGGTCCTATCCTATTATTATTATAAGTAAATAGTGGATCTTCGACTA
GCAGCTTGAACGTGGCTAATTTAACCGGAGATCGTAGTCTCCGCAGTGAACAGAGGATTTGGCCC
AGCTTCTCTGATCTTTCTTGGCTCTTGAATAGGATTTTCCACCTAACGGGAACCAATCAGTCCCA
GATCCAACAGAGGACAATTGGGACGAAAGCAGCAGGAACCTAATCTGACTGAGCAGGCAAGGTAA
GCATCCACAAGCAAGATTGGGAACAATAAAATAAGGAGCACGGCTTCGGTACAGATGTTTTTGGT
GATTCGCTTCTCCCTTCCAGGGAGTGGACGGTTTACTTACTCCCGAGGGAAAGATAGCAAAGGTA
TTCTGTGAATGAGAGCTCCTACCCCTATCATCCTATCAAAAAAAGAACTAGTCAACCTAATCTCC
GGAATTGGTCAATCCGCTTTTTCCTTTAGTCTTGCTAGACCGTAC
Right flanking sequence: Indices 627716 -- 628215
CTCCTTTTCTTTCTTTATTCAAATAGAAAATAAAACTCTTTTTACGGTTAAAATAGGATATGCGA
CAGAAGATAGAATATCTCAGTTGTCGCAAATCCGTTTTCTGAAGAGGAAGAGAGTATGTCGCAAA
TAGGTTGTTGTATGTATAGTATAATTCATAACTTGACTCTCAGTCAGCTTCGCCTAACGATCTTT
AGATCCTTCTCTAAGCCAGAGTTTATGTCTTAAAATATAGAATTCAATTAAAAATAGCTTTCTCT
CTCTCTTATTTTAGAAGTGTTATATACATAACAGGCTATAGCTATCTAATCACTCTTCTCTTTCA
CAGCTGATCTGCGACAGCTGAGATTCTCTTACTTATATACAACAGCGGATATGCCGACATCTATC
CCATATGTCACTAAGTTCAGCGGTAGCATGAATAAGGTGAGCGCTCATCTCGAGAGCGTGAAAAA
AGAAGTACCACTAAGAGCGCATTCGAGGCCATCCTCTTCTCTTAG
Found at i:638615 original size:24 final size:24
Alignment explanation
Indices: 638583--638631 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
638573 CAGCGTGCGA
638583 ATAGCATGTGTTAAGCATATAGCT
1 ATAGCATGTGTTAAGCATATAGCT
*
638607 ATAGCATGTTTTAAGCATATAGCT
1 ATAGCATGTGTTAAGCATATAGCT
638631 A
1 A
638632 GCGTTCCTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (24 bp):
ATAGCATGTGTTAAGCATATAGCT
Left flanking sequence: Indices 638083 -- 638582
CCAAGAAAAGCATGGGAGTCTTTTATCGGAGATTCGTGAAAGATATCAAAGGCCTAGTTCGATTA
AGAGGAAGCACAGACGTACCACCCCAGCTTACCTAGAAGTTAAGGAAAACACAGAGCAATGATTT
GTTGCTGACCAAAAGGAAGATTTGTAAGAAACTAGAAAGCTAATCCTGGAACGGTAAGAAGGTTA
AGAGATCACGATCGGATAACGGCCACATCGATATCGGCTACGGGGATAGCCCCCTTTTGCTAACC
ACAAGCAAGATTCGTCACGACATAAAGCATGGTGGAGAGAGAACGAACAGAGAGTCCACCAGCGA
ATGAAGGGAATCAAGGGGCAGCAGGATCACTTTCTCTTACGCTCAGAAAAAGAAGTACCAACGAT
TTCTAACTTCAGCGCATGCTGCTTTCGTTAGCTTCTGTTGTACTTGGATTCGTCTTACTAAAAAA
AAGAAAGATCCATTTTGAGGTTGAAAACCCCAAAACAGCGTGCGA
Right flanking sequence: Indices 638632 -- 639131
GCGTTCCTTCGGTGAGCCAGGATCAAACTCTTCTTGACTATGAGACCCCCCAAAACATCGTATCA
GGGTCTCAGTTTCTTCTCTTATGATAGAGTTGCTTCTCTTAAGAAATTCTTTCTTTTCTTACGAC
ATTTTCTCTTTTCTTAAGAGAAGCCCGCAGATTTTTTTCTAATGGTTTATTCAATCAAGTGATGT
TGTTTTTGTTTTGTTGTAGCAACACAAAAAAATCAAGCATATGAAGAGCATCTATAGTTGTAGAC
AGTAAAAAAAAGTTCTTCGAAGCTGTGCTAATGGTGGTCAAGGATAAGGTACTAGTTTCAGTGGG
AGACATTGAGTCTGCATGAGAAATCTGGGAGACTCCACAGAGAATGTATGAGTCAGTGACAATGG
TAAACATGAAGTTTCTTCGGCAACGGTTTTTTCTAAGCAAGATGCAAGAGGGGACGAGCATGTCT
CAGCACTTAGACAAGATGGAGAAGATTTTCAAAGAATTTGTAGCA
Found at i:638756 original size:20 final size:20
Alignment explanation
Indices: 638733--638780 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
638723 GAGTTGCTTC
638733 TCTTAAGAAATTCTT-TCTTT
1 TCTTAAGAAATT-TTCTCTTT
* *
638753 TCTTACGACATTTTCTCTTT
1 TCTTAAGAAATTTTCTCTTT
638773 TCTTAAGA
1 TCTTAAGA
638781 GAAGCCCGCA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 2 0.08
20 22 0.92
ACGTcount: A:0.23, C:0.19, G:0.06, T:0.52
Consensus pattern (20 bp):
TCTTAAGAAATTTTCTCTTT
Left flanking sequence: Indices 638233 -- 638732
TTTGTAAGAAACTAGAAAGCTAATCCTGGAACGGTAAGAAGGTTAAGAGATCACGATCGGATAAC
GGCCACATCGATATCGGCTACGGGGATAGCCCCCTTTTGCTAACCACAAGCAAGATTCGTCACGA
CATAAAGCATGGTGGAGAGAGAACGAACAGAGAGTCCACCAGCGAATGAAGGGAATCAAGGGGCA
GCAGGATCACTTTCTCTTACGCTCAGAAAAAGAAGTACCAACGATTTCTAACTTCAGCGCATGCT
GCTTTCGTTAGCTTCTGTTGTACTTGGATTCGTCTTACTAAAAAAAAGAAAGATCCATTTTGAGG
TTGAAAACCCCAAAACAGCGTGCGAATAGCATGTGTTAAGCATATAGCTATAGCATGTTTTAAGC
ATATAGCTAGCGTTCCTTCGGTGAGCCAGGATCAAACTCTTCTTGACTATGAGACCCCCCAAAAC
ATCGTATCAGGGTCTCAGTTTCTTCTCTTATGATAGAGTTGCTTC
Right flanking sequence: Indices 638781 -- 639280
GAAGCCCGCAGATTTTTTTCTAATGGTTTATTCAATCAAGTGATGTTGTTTTTGTTTTGTTGTAG
CAACACAAAAAAATCAAGCATATGAAGAGCATCTATAGTTGTAGACAGTAAAAAAAAGTTCTTCG
AAGCTGTGCTAATGGTGGTCAAGGATAAGGTACTAGTTTCAGTGGGAGACATTGAGTCTGCATGA
GAAATCTGGGAGACTCCACAGAGAATGTATGAGTCAGTGACAATGGTAAACATGAAGTTTCTTCG
GCAACGGTTTTTTCTAAGCAAGATGCAAGAGGGGACGAGCATGTCTCAGCACTTAGACAAGATGG
AGAAGATTTTCAAAGAATTTGTAGCAGTGAGAGTCAAAATGACTGATCGTGATCAGTGACCGGGA
AGTCTGCTGAAGTCGTTTGAGTCTTTGACAACCACCCTCTCCCGTGAAACTCCTCCTTTAACTAT
GATTGATCTGACGCTTTTCTTTAGGCAGAAGCTGAAAAGAGATTT
Found at i:640775 original size:20 final size:20
Alignment explanation
Indices: 640734--640776 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
640724 CCTTCAACGG
*
640734 GAGAGAGGATCGACGAACCT
1 GAGAGAGGATCCACGAACCT
*
640754 GAGAGAGGGATCCA-GAATCT
1 GAGAGA-GGATCCACGAACCT
640774 GAG
1 GAG
640777 GAAGCGACTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.35, C:0.16, G:0.37, T:0.12
Consensus pattern (20 bp):
GAGAGAGGATCCACGAACCT
Left flanking sequence: Indices 640234 -- 640733
ATCCGCACGGCTACAGTGGAACCCTTTATCAAAAATGAAGCAGTGAGAAAGGAGCTAAATTTCTT
AAACCAGGCTCCCTTCTTAGCTCTTGGTGCCTGCTTTAGCTTGTCGGAGGCCGTAACGTAAATCG
CTTTCTTGAGCTTGCATACCAAGTTAGGATTCCTAGGAGAAGAGAAGCCTGGGGTTGGAGGAGGC
TGAATAGAAACTTATTCTTGCGAATCCCCCTTCCCTTATGTTGTTGAAAGGCATTCTTCACGTCA
AGTTGAAATAAGGGCCACTTTTTGATTGCAGCCAATGGCTTGTTTCCCCGCGGGCAATGAGACTC
AGTCTTATTCTTTTTTTCCTGGGCATTTCTTTCTTCCTGCATAGCATCTCTCCAGCAAGAATGAT
TAAAGGCTTCAGCAAATGATTCAGGTTCATGAGAAGATTGAACTGACATGAGGTAAGCTCGATGT
TTTGGGGAAAACTATTCATAAGATAAGACAAGAATCCTTCAACGG
Right flanking sequence: Indices 640777 -- 641276
GAAGCGACTGGAAGGGAAGCTACTGGGCTAGACTGCTGATCTTCTGGAGTAGTCTTCCCCTGGGA
AACTCAGTGTAATCGCCGCCGAGAATAAACATGCTGTGCCGGGTGACTGGAATCCTCTGAGGTCA
GCTGAACAGGCTGACAATCGGCAGAAGATGTTGGGCAAGGCTGCTGGCCTGAAGAGTGAGGCTGA
TCCGTAACATCAACTGCAGAAGAATGAGGTTCGAGTTGATGAACAGGAGAAGGCCGCAATACATC
TCCATCACCATTCTCCCCCGGGGCTGATTAATTAGGTTAAGGAAAATATGAGGCGACCTCATTAA
AGAGAACATTCAAGGATACATCGAGTCTCTTGGATTTCACGTCATAGCATCTATACCCGGACTAA
GCATATCCAAGAAAGACACAAGTGGTTTCCTTGGGGACAATTTTTCTCTTAATTGCGCAGGAATA
TGAACAAAACACGTGCATCCAAACACTCGAAAATGCCTATAGGAT
Found at i:671628 original size:22 final size:22
Alignment explanation
Indices: 671603--671686 Score: 114
Period size: 22 Copynumber: 3.8 Consensus size: 22
671593 GGGAATAACA
671603 AACAACCAATACAGGAACTGCT
1 AACAACCAATACAGGAACTGCT
* * *
671625 AACAGCCAATACGGGAACGGCT
1 AACAACCAATACAGGAACTGCT
*
671647 AACAAACAATACAGGAACTGCT
1 AACAACCAATACAGGAACTGCT
*
671669 AACTACCAACTACAGGAA
1 AACAACCAA-TACAGGAA
671687 AACAAGAAAC
Statistics
Matches: 52, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
22 44 0.85
23 8 0.15
ACGTcount: A:0.45, C:0.26, G:0.17, T:0.12
Consensus pattern (22 bp):
AACAACCAATACAGGAACTGCT
Left flanking sequence: Indices 671103 -- 671602
AGGAATGGTCGGATAGTAACTCGGAAAGTAGCTCAATGTGAGGAATGGAGAGAAAGGACAGACAA
GAGATGAACTTGAATCTATTGTATGGCCTCTAGCGTCCCTTTTATCGGCCGCTCCGGGTACCTCA
TGAGAGATTGCGCGTAAAAGCACTAGTAGCGGGATAGTAGCTACGTAAAAACGCTCTGAGCGGGT
GTTCTAATTAATATTCCCTCTCACGCACACATACACACACATGAGCGTACAAGCGAGCACACCAG
CCAGCACACACACCAGGACACCTGCGAGTACACGACGGGAATCAATATTCAATCAAATACAAAAC
TCTTAATAATTACTCTCCTTACTCGGAGGAGAACAACAACAATTAAAAAATCCCAGAAACACAAA
TACAAACTCACTGTTACCAAGTAACCAATACAATACCGAGGAGCAGGTAACCATTACCAATACCT
GGAACATTTAACGGGAACAAAGTAACTACCCAGGAGGGAATAACA
Right flanking sequence: Indices 671687 -- 672186
AACAAGAAACAGACCAATAACCAATCCGGGGAACCCGGGATAACTACCCACTACAATACCTGAAA
CTAACCCTGGAACTACCAGGTACCAGGGAACAACCAACAATTCTTACTACCCGGAAGAAACCTAT
ACCTGGACCAATACCGGGAAGAACATTTACCAGGAAGAACATTGACTGGGAACAAATACCAAATA
CCGAGTGGGAACAACTACCAAATACCGAGGACCAAGTAACAACCGGGAGCGAGGAACAAGTAACA
ACGGGGAACGAGGAGCGGGAAACGAAGAAAGGGAGAACTTTAACAACTATTTCCTGACTTTCTTC
CTATTTCCTGACTTTCCTTGGGAAGTAAGTAATACACATATAGCTCGTTTCCTTTTAGCAACTAC
AAGTAATAGCTGAAGAGGCAATGGGAATACCAACTACATATATTTCCTGTTTCTGTTCTATCCCC
TGGTATTTGAACAACTAATATCTTTTCTTTAACTCATACCTATTT
Found at i:671852 original size:16 final size:16
Alignment explanation
Indices: 671828--671859 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
671818 CCTGGACCAA
*
671828 TACCGGGAAGAACATT
1 TACCAGGAAGAACATT
671844 TACCAGGAAGAACATT
1 TACCAGGAAGAACATT
671860 GACTGGGAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.19, G:0.22, T:0.19
Consensus pattern (16 bp):
TACCAGGAAGAACATT
Left flanking sequence: Indices 671328 -- 671827
ATACACACACATGAGCGTACAAGCGAGCACACCAGCCAGCACACACACCAGGACACCTGCGAGTA
CACGACGGGAATCAATATTCAATCAAATACAAAACTCTTAATAATTACTCTCCTTACTCGGAGGA
GAACAACAACAATTAAAAAATCCCAGAAACACAAATACAAACTCACTGTTACCAAGTAACCAATA
CAATACCGAGGAGCAGGTAACCATTACCAATACCTGGAACATTTAACGGGAACAAAGTAACTACC
CAGGAGGGAATAACAAACAACCAATACAGGAACTGCTAACAGCCAATACGGGAACGGCTAACAAA
CAATACAGGAACTGCTAACTACCAACTACAGGAAAACAAGAAACAGACCAATAACCAATCCGGGG
AACCCGGGATAACTACCCACTACAATACCTGAAACTAACCCTGGAACTACCAGGTACCAGGGAAC
AACCAACAATTCTTACTACCCGGAAGAAACCTATACCTGGACCAA
Right flanking sequence: Indices 671860 -- 672359
GACTGGGAACAAATACCAAATACCGAGTGGGAACAACTACCAAATACCGAGGACCAAGTAACAAC
CGGGAGCGAGGAACAAGTAACAACGGGGAACGAGGAGCGGGAAACGAAGAAAGGGAGAACTTTAA
CAACTATTTCCTGACTTTCTTCCTATTTCCTGACTTTCCTTGGGAAGTAAGTAATACACATATAG
CTCGTTTCCTTTTAGCAACTACAAGTAATAGCTGAAGAGGCAATGGGAATACCAACTACATATAT
TTCCTGTTTCTGTTCTATCCCCTGGTATTTGAACAACTAATATCTTTTCTTTAACTCATACCTAT
TTCCTGAAAGGGGAGTTACTAATAATTCCTGGGGGAAGGTAAGTGTACCAAGAAGTAAGAAGAAG
TACCAAAGCGGGGGAATGGGAATAACTCCTAACTCTTAACTACCAATAACAACAATAACAAATAC
TTAACTCTCCTGTATTAACTCAACTACTAATAGCTAACCAACTAC
Found at i:671868 original size:16 final size:16
Alignment explanation
Indices: 671829--671868 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
671819 CTGGACCAAT
*
671829 ACCGGGAAGAACATTT
1 ACCGGGAAGAACATTG
*
671845 ACCAGGAAGAACATTG
1 ACCGGGAAGAACATTG
*
671861 ACTGGGAA
1 ACCGGGAA
671869 CAAATACCAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.40, C:0.17, G:0.28, T:0.15
Consensus pattern (16 bp):
ACCGGGAAGAACATTG
Left flanking sequence: Indices 671329 -- 671828
TACACACACATGAGCGTACAAGCGAGCACACCAGCCAGCACACACACCAGGACACCTGCGAGTAC
ACGACGGGAATCAATATTCAATCAAATACAAAACTCTTAATAATTACTCTCCTTACTCGGAGGAG
AACAACAACAATTAAAAAATCCCAGAAACACAAATACAAACTCACTGTTACCAAGTAACCAATAC
AATACCGAGGAGCAGGTAACCATTACCAATACCTGGAACATTTAACGGGAACAAAGTAACTACCC
AGGAGGGAATAACAAACAACCAATACAGGAACTGCTAACAGCCAATACGGGAACGGCTAACAAAC
AATACAGGAACTGCTAACTACCAACTACAGGAAAACAAGAAACAGACCAATAACCAATCCGGGGA
ACCCGGGATAACTACCCACTACAATACCTGAAACTAACCCTGGAACTACCAGGTACCAGGGAACA
ACCAACAATTCTTACTACCCGGAAGAAACCTATACCTGGACCAAT
Right flanking sequence: Indices 671869 -- 672368
CAAATACCAAATACCGAGTGGGAACAACTACCAAATACCGAGGACCAAGTAACAACCGGGAGCGA
GGAACAAGTAACAACGGGGAACGAGGAGCGGGAAACGAAGAAAGGGAGAACTTTAACAACTATTT
CCTGACTTTCTTCCTATTTCCTGACTTTCCTTGGGAAGTAAGTAATACACATATAGCTCGTTTCC
TTTTAGCAACTACAAGTAATAGCTGAAGAGGCAATGGGAATACCAACTACATATATTTCCTGTTT
CTGTTCTATCCCCTGGTATTTGAACAACTAATATCTTTTCTTTAACTCATACCTATTTCCTGAAA
GGGGAGTTACTAATAATTCCTGGGGGAAGGTAAGTGTACCAAGAAGTAAGAAGAAGTACCAAAGC
GGGGGAATGGGAATAACTCCTAACTCTTAACTACCAATAACAACAATAACAAATACTTAACTCTC
CTGTATTAACTCAACTACTAATAGCTAACCAACTACTAAGTAACC
Found at i:671895 original size:24 final size:24
Alignment explanation
Indices: 671863--671910 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
671853 GAACATTGAC
671863 TGGGAACAAATACCAAATACCGAG
1 TGGGAACAAATACCAAATACCGAG
*
671887 TGGGAACAACTACCAAATACCGAG
1 TGGGAACAAATACCAAATACCGAG
671911 GACCAAGTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.44, C:0.23, G:0.21, T:0.12
Consensus pattern (24 bp):
TGGGAACAAATACCAAATACCGAG
Left flanking sequence: Indices 671363 -- 671862
CCAGCACACACACCAGGACACCTGCGAGTACACGACGGGAATCAATATTCAATCAAATACAAAAC
TCTTAATAATTACTCTCCTTACTCGGAGGAGAACAACAACAATTAAAAAATCCCAGAAACACAAA
TACAAACTCACTGTTACCAAGTAACCAATACAATACCGAGGAGCAGGTAACCATTACCAATACCT
GGAACATTTAACGGGAACAAAGTAACTACCCAGGAGGGAATAACAAACAACCAATACAGGAACTG
CTAACAGCCAATACGGGAACGGCTAACAAACAATACAGGAACTGCTAACTACCAACTACAGGAAA
ACAAGAAACAGACCAATAACCAATCCGGGGAACCCGGGATAACTACCCACTACAATACCTGAAAC
TAACCCTGGAACTACCAGGTACCAGGGAACAACCAACAATTCTTACTACCCGGAAGAAACCTATA
CCTGGACCAATACCGGGAAGAACATTTACCAGGAAGAACATTGAC
Right flanking sequence: Indices 671911 -- 672410
GACCAAGTAACAACCGGGAGCGAGGAACAAGTAACAACGGGGAACGAGGAGCGGGAAACGAAGAA
AGGGAGAACTTTAACAACTATTTCCTGACTTTCTTCCTATTTCCTGACTTTCCTTGGGAAGTAAG
TAATACACATATAGCTCGTTTCCTTTTAGCAACTACAAGTAATAGCTGAAGAGGCAATGGGAATA
CCAACTACATATATTTCCTGTTTCTGTTCTATCCCCTGGTATTTGAACAACTAATATCTTTTCTT
TAACTCATACCTATTTCCTGAAAGGGGAGTTACTAATAATTCCTGGGGGAAGGTAAGTGTACCAA
GAAGTAAGAAGAAGTACCAAAGCGGGGGAATGGGAATAACTCCTAACTCTTAACTACCAATAACA
ACAATAACAAATACTTAACTCTCCTGTATTAACTCAACTACTAATAGCTAACCAACTACTAAGTA
ACCAAGTAACCTACAATAACTAATACACATATCGCTCCTGTATTA
Found at i:671941 original size:24 final size:24
Alignment explanation
Indices: 671907--671960 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
671897 TACCAAATAC
* *
671907 CGAGGACCAAGTAACAACCGGGAG
1 CGAGGAACAAGTAACAACCGGGAA
*
671931 CGAGGAACAAGTAACAACGGGGAA
1 CGAGGAACAAGTAACAACCGGGAA
671955 CGAGGA
1 CGAGGA
671961 GCGGGAAACG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.41, C:0.20, G:0.35, T:0.04
Consensus pattern (24 bp):
CGAGGAACAAGTAACAACCGGGAA
Left flanking sequence: Indices 671407 -- 671906
ATATTCAATCAAATACAAAACTCTTAATAATTACTCTCCTTACTCGGAGGAGAACAACAACAATT
AAAAAATCCCAGAAACACAAATACAAACTCACTGTTACCAAGTAACCAATACAATACCGAGGAGC
AGGTAACCATTACCAATACCTGGAACATTTAACGGGAACAAAGTAACTACCCAGGAGGGAATAAC
AAACAACCAATACAGGAACTGCTAACAGCCAATACGGGAACGGCTAACAAACAATACAGGAACTG
CTAACTACCAACTACAGGAAAACAAGAAACAGACCAATAACCAATCCGGGGAACCCGGGATAACT
ACCCACTACAATACCTGAAACTAACCCTGGAACTACCAGGTACCAGGGAACAACCAACAATTCTT
ACTACCCGGAAGAAACCTATACCTGGACCAATACCGGGAAGAACATTTACCAGGAAGAACATTGA
CTGGGAACAAATACCAAATACCGAGTGGGAACAACTACCAAATAC
Right flanking sequence: Indices 671961 -- 672460
GCGGGAAACGAAGAAAGGGAGAACTTTAACAACTATTTCCTGACTTTCTTCCTATTTCCTGACTT
TCCTTGGGAAGTAAGTAATACACATATAGCTCGTTTCCTTTTAGCAACTACAAGTAATAGCTGAA
GAGGCAATGGGAATACCAACTACATATATTTCCTGTTTCTGTTCTATCCCCTGGTATTTGAACAA
CTAATATCTTTTCTTTAACTCATACCTATTTCCTGAAAGGGGAGTTACTAATAATTCCTGGGGGA
AGGTAAGTGTACCAAGAAGTAAGAAGAAGTACCAAAGCGGGGGAATGGGAATAACTCCTAACTCT
TAACTACCAATAACAACAATAACAAATACTTAACTCTCCTGTATTAACTCAACTACTAATAGCTA
ACCAACTACTAAGTAACCAAGTAACCTACAATAACTAATACACATATCGCTCCTGTATTAACTGA
ACTACTAATCCCGGAACTACTAACTACTAAATCCCGGAACTACTT
Found at i:672440 original size:22 final size:23
Alignment explanation
Indices: 672415--672459 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
672405 GTATTAACTG
672415 AACTACT-AATCCCGGAACTACT
1 AACTACTAAATCCCGGAACTACT
672437 AACTACTAAATCCCGGAACTACT
1 AACTACTAAATCCCGGAACTACT
672460 TGAGTAACTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 7 0.32
23 15 0.68
ACGTcount: A:0.38, C:0.31, G:0.09, T:0.22
Consensus pattern (23 bp):
AACTACTAAATCCCGGAACTACT
Left flanking sequence: Indices 671915 -- 672414
AAGTAACAACCGGGAGCGAGGAACAAGTAACAACGGGGAACGAGGAGCGGGAAACGAAGAAAGGG
AGAACTTTAACAACTATTTCCTGACTTTCTTCCTATTTCCTGACTTTCCTTGGGAAGTAAGTAAT
ACACATATAGCTCGTTTCCTTTTAGCAACTACAAGTAATAGCTGAAGAGGCAATGGGAATACCAA
CTACATATATTTCCTGTTTCTGTTCTATCCCCTGGTATTTGAACAACTAATATCTTTTCTTTAAC
TCATACCTATTTCCTGAAAGGGGAGTTACTAATAATTCCTGGGGGAAGGTAAGTGTACCAAGAAG
TAAGAAGAAGTACCAAAGCGGGGGAATGGGAATAACTCCTAACTCTTAACTACCAATAACAACAA
TAACAAATACTTAACTCTCCTGTATTAACTCAACTACTAATAGCTAACCAACTACTAAGTAACCA
AGTAACCTACAATAACTAATACACATATCGCTCCTGTATTAACTG
Right flanking sequence: Indices 672460 -- 672959
TGAGTAACTACTTCCTACTTTTCTTTTTAGAGAGTAACTCATCCACTGCTACTAATACTTTCACT
ACTACTTCCAGAACTAACAATAAGTAATACGTAACTCTCCTCTCCTTTGGGAGTCGAGTTACTCA
TTAACTCCTATACCTTTAACAACTATTTCCTGACCAGGGAGAACTTTAACAACTCTTTCTCCTGA
CCTGTAATACATATATTTCCAACTTTTACTTTTAACTCTCCTGTACTTGAAGAACTAAACAACTT
TCCGAAAAAGTACAAGTAATACCCGAAACTCGTAATACCTGAAATGGGAATACCAACAAGTAATA
CGTAAGTTTCCTTTACTTTGACAACTTTCCCAACTCATAACTATTAACTACCTTAAACAACCATA
ACTCATAGATAACTTTCCTTTACTTTCCCAAGGAGTAACTCAACAAGTAATACCTGAAAGTGGGA
ATATCCAAGTACTACTAAGAAACCAAGTACTTTAATTCCTAATAC
Found at i:673707 original size:15 final size:15
Alignment explanation
Indices: 673687--673744 Score: 64
Period size: 15 Copynumber: 3.8 Consensus size: 15
673677 GGAGGAACCC
673687 ATACATAACTTGCTA
1 ATACATAACTTGCTA
**
673702 ATACATAACTTGAGA
1 ATACATAACTTGCTA
*
673717 GTTACGA-AACTTGCTA
1 -ATAC-ATAACTTGCTA
673733 ATACATAACTTG
1 ATACATAACTTG
673745 AGAGTTACGA
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
14 1 0.03
15 22 0.65
16 10 0.29
17 1 0.03
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.31
Consensus pattern (15 bp):
ATACATAACTTGCTA
Left flanking sequence: Indices 673187 -- 673686
CTCAACTACTACTACTTCCTGAGCCCCGGGACTAACTAAGCAACTCCTATTTCTTGACTTTCCTT
GGGATGGGAGTAACTCATACATATATCTCCTGTAGTAAGTCAAGTACTACTTTGAGCTACTACTT
CCTGACTTTCCTTGGGAGGTAATAATAATTCCTGTGGGCTATCTTTCCTGCTTTACTGACCGGAA
TACCTATTTCCTGAGCTGGCTGAGCTGAGAATACCTTTAAGTACTATTTCCCGAACTGGGATAAC
TTTAAGAACTATTTCTTTCCTGACTTGACTTGGTAATACCAAATCCATATAGCTCCTACTTTTAC
TTTTTCCTCAACTACTTTTTCAAGTAATAGGTGCCCGGGGAACAACTAATACACAACTAGAGAAG
AGAGGAGAGGAAAGAAGTTACTCGGAGGAGATAATACCTGAAAGGACAAGGAACTATCCGGAAAA
GGGAGTAAAGGGCAGGAAGTAATAGGGGGGAAAAGGGAGGAACCC
Right flanking sequence: Indices 673745 -- 674244
AGAGTTACGAAGTGACGTAAAAAGTCAAAGGAGAGGAACGATTCCCTCGTCTGAGAACCGCCATT
CACGCACTATTCCTCTCCACTAAAAAGAGCGATTGAAAATCTCGATAACCTAAACAAAAATGCAG
AAGTGAGCGTATCCCAAAGCTCTCCTCTCTCCCCCTTTTTTAGCCAACCCCATTTTTCACCTTGA
ATTGGTCAAAGCCAAAAATCTGATGAATAGAAGGAAAGGAGATCAGAAAGATACGCGGACGACTT
GACTATAGTATAGGTTGGATGTTTCCGTGAGCAGTAAGCAGCGGATCTCCCCTTATTTTGGGAAA
GCTGGTGGCCGCGTGTGAATTCTTTCAAGGCAAGGGGCGGCCTGATTCGACATTGTTGTTTACTC
TGATCTGGTCGAGGTGGTTTTCGTTTACCAGCGCGTAGGTGGTCTAAGTTCCTATGACCGAGTCT
TTCTGGCCCCTGTGAACATCTTTTCTTAATGTATTAAAGAGGGCC
Found at i:673731 original size:31 final size:31
Alignment explanation
Indices: 673693--673755 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
673683 ACCCATACAT
673693 AACTTGCTAATACATAACTTGAGAGTTACGA
1 AACTTGCTAATACATAACTTGAGAGTTACGA
673724 AACTTGCTAATACATAACTTGAGAGTTACGA
1 AACTTGCTAATACATAACTTGAGAGTTACGA
673755 A
1 A
673756 GTGACGTAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.29
Consensus pattern (31 bp):
AACTTGCTAATACATAACTTGAGAGTTACGA
Left flanking sequence: Indices 673193 -- 673692
TACTACTACTTCCTGAGCCCCGGGACTAACTAAGCAACTCCTATTTCTTGACTTTCCTTGGGATG
GGAGTAACTCATACATATATCTCCTGTAGTAAGTCAAGTACTACTTTGAGCTACTACTTCCTGAC
TTTCCTTGGGAGGTAATAATAATTCCTGTGGGCTATCTTTCCTGCTTTACTGACCGGAATACCTA
TTTCCTGAGCTGGCTGAGCTGAGAATACCTTTAAGTACTATTTCCCGAACTGGGATAACTTTAAG
AACTATTTCTTTCCTGACTTGACTTGGTAATACCAAATCCATATAGCTCCTACTTTTACTTTTTC
CTCAACTACTTTTTCAAGTAATAGGTGCCCGGGGAACAACTAATACACAACTAGAGAAGAGAGGA
GAGGAAAGAAGTTACTCGGAGGAGATAATACCTGAAAGGACAAGGAACTATCCGGAAAAGGGAGT
AAAGGGCAGGAAGTAATAGGGGGGAAAAGGGAGGAACCCATACAT
Right flanking sequence: Indices 673756 -- 674255
GTGACGTAAAAAGTCAAAGGAGAGGAACGATTCCCTCGTCTGAGAACCGCCATTCACGCACTATT
CCTCTCCACTAAAAAGAGCGATTGAAAATCTCGATAACCTAAACAAAAATGCAGAAGTGAGCGTA
TCCCAAAGCTCTCCTCTCTCCCCCTTTTTTAGCCAACCCCATTTTTCACCTTGAATTGGTCAAAG
CCAAAAATCTGATGAATAGAAGGAAAGGAGATCAGAAAGATACGCGGACGACTTGACTATAGTAT
AGGTTGGATGTTTCCGTGAGCAGTAAGCAGCGGATCTCCCCTTATTTTGGGAAAGCTGGTGGCCG
CGTGTGAATTCTTTCAAGGCAAGGGGCGGCCTGATTCGACATTGTTGTTTACTCTGATCTGGTCG
AGGTGGTTTTCGTTTACCAGCGCGTAGGTGGTCTAAGTTCCTATGACCGAGTCTTTCTGGCCCCT
GTGAACATCTTTTCTTAATGTATTAAAGAGGGCCTCTCTAACCGG
Found at i:713538 original size:15 final size:15
Alignment explanation
Indices: 713518--713565 Score: 78
Period size: 15 Copynumber: 3.1 Consensus size: 15
713508 AAAAAAAAAG
713518 AAATATATTAAATAT
1 AAATATATTAAATAT
713533 AAATATATTAAATAT
1 AAATATATTAAATAT
*
713548 AAATATATATATATAT
1 AAATATAT-TAAATAT
713564 AA
1 AA
713566 TGGATATTCG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
15 23 0.74
16 8 0.26
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
AAATATATTAAATAT
Left flanking sequence: Indices 713018 -- 713517
TCCGGCAGCCTTGCTGGGATCTCCAGATCGAATAATTGGTTTACAAGACGCTCTTAGGGGGTCTG
GTCTTGTCTTCTCGGATTCCAGCTTTTGACTTTTCTTATAAAAAGCTTTGACCTACTCCCTGAGC
AGAGATGTACGCTTTATACAGGTTGTGGGGTCATGTATACTCATGGGATGGCTTTTTTTTGGAGT
AATGAGATTTTTTCATTGCATCCAAATCAATCAAGATCTAAGTAGTTGTTCAGTAAACTATTATA
CTTCTCGCATGCAGTACCCGAGTCTTGCCTATTTAAGGAATATGGAGGAGGTATGTGTCCTCTCG
GTCGCCTTGACCAATCACAGATCAGCCCGACTAACGGTCGCTTTGATCCGTTACAGATCAGCTCG
AAAGTACCCCTTTCCATTATGATAGGGGTGTATGGTAGGGCTAGAACAGGCATAATCGCTTGAAC
GGCTAGAAGTGGGCCGACTATCTTCCAACAAAAAAAAAAAAAAAG
Right flanking sequence: Indices 713566 -- 714065
TGGATATTCGGCGTTTAATGATATAGTATAGTCTAGTTCTAGACTCAAGCTAGCAAAAAACAAGA
CTGAGGTCGATAGGGGCATTACTGGTAATTTCATTTCTAAGGTTCTTTCTGAAGTATTAACCATT
GGCTAGCGCTCATCTCCAGCTCTGTTTCCAGCCTTTTATTTCATATATCATTCCCGTATGCCATA
CCTCTTATTTAGTCTTGCTATACGTCCAAGCCTTCTCCCATCGGTAGTTGGAAGCAGAACTGAGA
CTGGATGTAACTGAAGGAAAGGGGATATAGGTACGATAGGAGGGCACGGTTAAGCAGGTAAGCGA
AGGCTCTCTCTCTCGCTCTGTGGTCTTGTGTAAAGCCTTTCCGCCCATTATTAATTATTATTGAT
CTTCATTCTAAGTGAGCAAGCAGGTCGAAAGCAGTTGAAGCAATAGTAAGCAGGAAAGCAGAAGC
AAGAAGTCTTGAACTCTTGTGTAATACAGCTTCTCGGTCGCATTT
Done.