Specifications
==============

Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt2/NC_065224.1/NC_065224/Repetitive_sequence/123.misa.ini"

Definement of microsatellites (unit size / minimum number of repeats):
(1/10) (2/6) (3/5) (4/5) (5/5) (6/5) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           400769
Total number of identified SSRs:                 51
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	41
2	6
3	4

Frequency of identified SSR motifs
----------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	total
A	-	-	-	-	-	7	2	1				10
C	-	-	-	-	-	2						2
G	-	-	-	-	-	2	1					3
T	-	-	-	-	-	14	4	3	2	1	2	26
AG	-	2										2
AT	-	1		1								2
CT	-	1										1
GA	-		1									1
ACT	1											1
CTT	1											1
GTT	2											2

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	total
A/T	-	-	-	-	-	21	6	4	2	1	2	36
C/G	-	-	-	-	-	4	1					5
AG/CT	-	3	1									4
AT/AT	-	1		1								2
AAC/GTT	2											2
AAG/CTT	1											1
ACT/AGT	1											1