Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_053625
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 527575
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Found at i:7862 original size:127 final size:127
Alignment explanation
Indices: 7636--7889 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
7626 TTCAAATGGC
7636 CCCACAGACGGAATCGAATAAGCTCTTTTCAGGTCTAGAAGCAAGAACTCTTGAGTAAGCCTCTC
1 CCCACAGACGGAATCGAATAAGCTCTTTTCAGGTCTAGAAGCAAGAACTCTTGAGTAAGCCTCTC
7701 CTATTGATGACGAAAAACACGCTGTTTTAAGCTTCTTCTTAACGGGTATTTGGCAAGCTTGG
66 CTATTGATGACGAAAAACACGCTGTTTTAAGCTTCTTCTTAACGGGTATTTGGCAAGCTTGG
7763 CCCACAGACGGAATCGAATAAGCTCTTTTCAGGTCTAGAAGCAAGAACTCTTGAGTAAGCCTCTC
1 CCCACAGACGGAATCGAATAAGCTCTTTTCAGGTCTAGAAGCAAGAACTCTTGAGTAAGCCTCTC
7828 CTATTGATGACGAAAAACACGCTGTTTTAAGCTTCTTCTTAACGGGTATTTGGCAAGCTTGG
66 CTATTGATGACGAAAAACACGCTGTTTTAAGCTTCTTCTTAACGGGTATTTGGCAAGCTTGG
7890 ATGCCCCTAC
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (127 bp):
CCCACAGACGGAATCGAATAAGCTCTTTTCAGGTCTAGAAGCAAGAACTCTTGAGTAAGCCTCTC
CTATTGATGACGAAAAACACGCTGTTTTAAGCTTCTTCTTAACGGGTATTTGGCAAGCTTGG
Left flanking sequence: Indices 7136 -- 7635
GAAAGGCGAACATCTGGGCAAGGGAAAGCCCTTTACTAATACTAAGCGCCTGGTGCAAATGGCTT
TCTTTTTTCATGATATACCAATCAGAATGGAGGGTCCTACCCACGTACATGATTGATAGAATCAC
TACGTAGGGGGGGGCTGATGCGGGAGAGGCATGAGTGCAGTTCGATCTTGTGGTGTATTCGTCTG
TAGTGAGTAGGGCCTCTTTCTCGTTGATCAGTTCGCCTCCGCTCTATTGAAAGGTCTCCATTCCT
ACGGCGGTTTTGTCACCATTACTACTAGGGCGCGTCTCGGGCCGGATTGACTAACCTAACCCTTA
AGGAGGCCTTGCCATAGTTGGGTGCTCTGCTTTAGTGTGATTGACGAAGTTGGTAATACCCAAAA
CAAATGAAAAGAGATCGGGGTCGATAGTTGGCAAGGAACTTCCATAGGGACTTGAGGAATAGAAG
GGCTTGTTAGCAAGAGATGGCATGAATAAGCTGTTTTCAAATGGC
Right flanking sequence: Indices 7890 -- 8389
ATGCCCCTACTCCCAACAAGTTGCTGGTCGGGATCGTGGAACTATCGCTCGAGAAGTAAGTAAGC
TGGTCCTTGTTTGGTCATAAGGATAATCGTTCTTATTAGGTCAGGGGCGGCCGGACCGGGGGTTA
CCCGCGATTGGTAATGGCACAAAGAAGGGTAGGGGAGACAAGGTTACGCGCTGGGTAGCGCAGCG
CATCTGTTTCGGGTACAGAGGCGACGAGGGGTGCTAACCCGGCCACCCCACCCAGCAGGTCAGGG
TCGGGCCGGCCATAGGTTCGAATCCTGCCACCTTTCTTGTGGATCATCCTGTGGTTACCGGATGA
TGAGAATAACAAAGCAGAAATTAATAAATGAGCACGAAATGTCAATATATGAATTGTTTCATTAT
TCGTTATTTCCGGGTCTTTTCGTTGCATTCACTTACAACAAGAAACAACCACCAGCGTTTGGTGC
AGCACCTGCATTTTGGTGCATTCTTCTTTCTTTCCTTGGTCTTTC
Found at i:11113 original size:11 final size:11
Alignment explanation
Indices: 11097--11121 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
11087 TTGCTTATAG
11097 ATAGATAATTA
1 ATAGATAATTA
11108 ATAGATAATTA
1 ATAGATAATTA
11119 ATA
1 ATA
11122 TAATAGATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.36
Consensus pattern (11 bp):
ATAGATAATTA
Left flanking sequence: Indices 10597 -- 11096
AGATAACATCGATAGATTGGCAGGATGAAGCTATTGCTATCGATACCATATTAAACTTAAGGGTT
TCGCTATCGCGAGAATATAGCGATCGAAGACGCTCAGCTGCTTCGCGTATTTTGAAAGCCGTATT
GCCGGAAGGGGGCATGCTGCAAGAGCGTGGGCGAGTGGTAAGCATAGGGGGCGCGCCCGAAGGGC
AGCGGCAGCAATGTGGTTACAGGTGCCGTCGCGTCATTGATATCCGCAGGGTGGCGGGGACTTCG
ATTGCCTTGTATCGGGTGAAGAGAAGGGGTGGTAGGCTTAGTAGGGCTCGAACCTACAATATCAC
CGTTATGAGCGGTACGTTTCACCAATTAAACTATAAGCCCCTACGGATATCTCTACATGCAATTC
GCTCACTTCGGGAAGAGTGCACGGAAAGGGGGGGCCTTTTGCTCTATCTGCTTCTTTCTCTTCCC
AGGAATGCAGAATTAGATAAAAAAGGGTTATCTTATTGCTTATAG
Right flanking sequence: Indices 11122 -- 11621
TAATAGATCTATTATATTAATAAATTAAATATATAATTAAGCAAGCGGCCCTTTCGCGACTCAAA
CTGCCGGTACGCTTTCCGGCTCGCAACGACTCAAACGGGGGGCTCTCTAAAAGCTTGCAATGCCG
GCTGTTCGCCTTTAGTTAGAAGTAGAGGGCGAAGTCCTTCTACAGCGCCGCGCCTATTTGAGTAA
AGTTTTAGCTTTTTTTCTAGAATGAGAAATAGGAGACCCACCTGCTTGTGAACATCTTTCTGCTT
GTCCCTCTACCTTTGACTTTTGCCCTTCCTTCCCTGTTCCTTAATAAATTACCTGCTGATCCCCC
TCTGAGAGCACTATGAGTCACCTTGGAGCCTTGATTACTTTGCTGTTCTCCCTTGCTTGATCTCT
TGTTGTGTAATGAGATATGGGAAAAGCAGGTTTTTGCTCTACCACAGGGAAAAGGGGCATCACTA
CTCGTCTCGATAAGGTGCAGGAATGGAACCTATTGAATCAAAGCA
Found at i:11113 original size:15 final size:16
Alignment explanation
Indices: 11093--11129 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
11083 CTTATTGCTT
11093 ATAGATAGA-TAAT-TA
1 ATAGATA-ATTAATATA
11108 ATAGATAATTAATATA
1 ATAGATAATTAATATA
11124 ATAGAT
1 ATAGAT
11130 CTATTATATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 1 0.05
15 11 0.55
16 8 0.40
ACGTcount: A:0.54, C:0.00, G:0.11, T:0.35
Consensus pattern (16 bp):
ATAGATAATTAATATA
Left flanking sequence: Indices 10593 -- 11092
TTACAGATAACATCGATAGATTGGCAGGATGAAGCTATTGCTATCGATACCATATTAAACTTAAG
GGTTTCGCTATCGCGAGAATATAGCGATCGAAGACGCTCAGCTGCTTCGCGTATTTTGAAAGCCG
TATTGCCGGAAGGGGGCATGCTGCAAGAGCGTGGGCGAGTGGTAAGCATAGGGGGCGCGCCCGAA
GGGCAGCGGCAGCAATGTGGTTACAGGTGCCGTCGCGTCATTGATATCCGCAGGGTGGCGGGGAC
TTCGATTGCCTTGTATCGGGTGAAGAGAAGGGGTGGTAGGCTTAGTAGGGCTCGAACCTACAATA
TCACCGTTATGAGCGGTACGTTTCACCAATTAAACTATAAGCCCCTACGGATATCTCTACATGCA
ATTCGCTCACTTCGGGAAGAGTGCACGGAAAGGGGGGGCCTTTTGCTCTATCTGCTTCTTTCTCT
TCCCAGGAATGCAGAATTAGATAAAAAAGGGTTATCTTATTGCTT
Right flanking sequence: Indices 11130 -- 11629
CTATTATATTAATAAATTAAATATATAATTAAGCAAGCGGCCCTTTCGCGACTCAAACTGCCGGT
ACGCTTTCCGGCTCGCAACGACTCAAACGGGGGGCTCTCTAAAAGCTTGCAATGCCGGCTGTTCG
CCTTTAGTTAGAAGTAGAGGGCGAAGTCCTTCTACAGCGCCGCGCCTATTTGAGTAAAGTTTTAG
CTTTTTTTCTAGAATGAGAAATAGGAGACCCACCTGCTTGTGAACATCTTTCTGCTTGTCCCTCT
ACCTTTGACTTTTGCCCTTCCTTCCCTGTTCCTTAATAAATTACCTGCTGATCCCCCTCTGAGAG
CACTATGAGTCACCTTGGAGCCTTGATTACTTTGCTGTTCTCCCTTGCTTGATCTCTTGTTGTGT
AATGAGATATGGGAAAAGCAGGTTTTTGCTCTACCACAGGGAAAAGGGGCATCACTACTCGTCTC
GATAAGGTGCAGGAATGGAACCTATTGAATCAAAGCAGTCCCCTC
Found at i:20298 original size:127 final size:127
Alignment explanation
Indices: 20072--20453 Score: 587
Period size: 127 Copynumber: 3.0 Consensus size: 127
20062 CACTTCAAGG
20072 CAAGAGAAGAGGACCGGTCGCTTGTATCTTCGGGATACGAGTTGGCGGTCTTCTTTAAGAACTCT
1 CAAGAGAAGAGGACCGGTCGCTTGTATCTTCGGGATACGAGTTGGCGGTCTTCTTTAAGAACTCT
20137 TGACTCTAATACTCATTATGGATCAACTCGTTGCGGATTTCATTTCTAGGATGGGTTTGGCT
66 TGACTCTAATACTCATTATGGATCAACTCGTTGCGGATTTCATTTCTAGGATGGGTTTGGCT
20199 CAAGAGAAGAGGACCGGTCGCTTGTATCTTCGGGATACGAGTTGGCGGTCTTCTTTAAGAACTCT
1 CAAGAGAAGAGGACCGGTCGCTTGTATCTTCGGGATACGAGTTGGCGGTCTTCTTTAAGAACTCT
20264 TGACTCTAATACTCATTATGGATCAACTCGTTGCGGATTTCATTTCTAGGATGGGTTTGGCT
66 TGACTCTAATACTCATTATGGATCAACTCGTTGCGGATTTCATTTCTAGGATGGGTTTGGCT
* *** ** * * *
20326 C-TG-CCTGTA-G--CTAT-TCTTGTAGCCGTTAGGGCTGATACGAGTTGGCGGTCTTCTTTAAG
1 CAAGAGAAG-AGGACCGGTCGCTTGTA-TC-TT-CGG--GATACGAGTTGGCGGTCTTCTTTAAG
20385 AACTCTTGACTCTAATACTCATTATGGATCAACTCGTTGCGGATTTCATTTCTAGGATGGGTTTG
60 AACTCTTGACTCTAATACTCATTATGGATCAACTCGTTGCGGATTTCATTTCTAGGATGGGTTTG
20450 GCT
125 GCT
20453 C
1 C
20454 TGCCTGTAGC
Statistics
Matches: 240, Mismatches: 9, Indels: 12
0.92 0.03 0.05
Matches are distributed among these distances:
122 6 0.03
123 3 0.01
124 2 0.01
125 4 0.02
126 2 0.01
127 223 0.93
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.34
Consensus pattern (127 bp):
CAAGAGAAGAGGACCGGTCGCTTGTATCTTCGGGATACGAGTTGGCGGTCTTCTTTAAGAACTCT
TGACTCTAATACTCATTATGGATCAACTCGTTGCGGATTTCATTTCTAGGATGGGTTTGGCT
Left flanking sequence: Indices 19572 -- 20071
AGACTACGAGACTAAGAGTTGGGACTAGCCGCATGTCATCTTTCTCAGGTATTTCTTCCTTCTCC
CCTTACTCCATCCAAGAGCCGACCTCTATTTATTCTCCTTCAATCGCAGGAGAAAGTCACTCGAT
TCCCCTGTAACTCGATAAATCATAAGAGAAGAAAGCTGTTAACGTAGGTCGGATCCTAGCGTCGA
TAAATGCTATCCGACTTGAATGATCGAATCGATTCACTTTGTCGAGATTGGCTTGGTCTTCAGTG
TACCGCTCCGAAGCTTGTGTAGCCTATGCGAAGCAAGCCTACATAGGGTACAAGATCGAAAAGAA
CCCTATAGGCAGGCAGGCTAAAAGCGCTGTCCGTCTTCATGGCCTCAATTAGGTATTTTACTGGC
CAAATTCGTTTCACGGAGTATACCTCAATCTCCGTTAGTTCAGTTTCGGCTTTGTCCCAAATTGT
CCACTCCTTCTGTGAGGCAAAACCTCACCACACTACACTTCAAGG
Right flanking sequence: Indices 20454 -- 20953
TGCCTGTAGCTATTCTTGTAGCCGTTAGGGCTAGCCGAATGATCCATCAAATAGTCTGAATATGG
AGACAGAGGTAACTGATTTAGCAATAGATGTTGTTAAGGAAAAGATAGTGAACCAACTAAAAATT
CTGTTTAGAGTATATCGCGATACTACTTTAGATGTGAACTTACCAACAGGAGTCAATCTCCAAGA
GGTAAGCGAACGTTTCTTTGATATTGAGGTAAGCTTACGTCCCCTTTTTCGAGAAGAAAGAGTAA
GCTCTCTAAACAATATTTATTTAGATCTTATTTCTCAGGGAACGCAAAGTGAGTACTTTCTCCAA
GTTATACAATTTCTTGGAGGGTAGTCTTTCTTTTACTGACACAGCAGGCTGGGGGATTTGGTAAG
GCCATTGACCCCCCTTTTCCTAGGGGGTATAAAATACCTGAATTGACCTTGTTCTCGGAAGAAGG
AAGTGTCTCAGCCTTAGAACACATGGCTCGATTTACTTTCCAGTG
Found at i:32636 original size:127 final size:127
Alignment explanation
Indices: 32410--32665 Score: 512
Period size: 127 Copynumber: 2.0 Consensus size: 127
32400 GTCGTCTACT
32410 TTCAGGAAATGTTCGGAACAGAGAACTAACAATAATACAACGCCGCATTCTCCGAAGATTGAGGA
1 TTCAGGAAATGTTCGGAACAGAGAACTAACAATAATACAACGCCGCATTCTCCGAAGATTGAGGA
32475 ACAAGACGAGATCTATTAAGAGAAAGATTTATCCGAGAAAAAATCTTAACAGTTACATCCAA
66 ACAAGACGAGATCTATTAAGAGAAAGATTTATCCGAGAAAAAATCTTAACAGTTACATCCAA
32537 TTCAGGAAATGTTCGGAACAGAGAACTAACAATAATACAACGCCGCATTCTCCGAAGATTGAGGA
1 TTCAGGAAATGTTCGGAACAGAGAACTAACAATAATACAACGCCGCATTCTCCGAAGATTGAGGA
32602 ACAAGACGAGATCTATTAAGAGAAAGATTTATCCGAGAAAAAATCTTAACAGTTACATCCAA
66 ACAAGACGAGATCTATTAAGAGAAAGATTTATCCGAGAAAAAATCTTAACAGTTACATCCAA
32664 TT
1 TT
32666 ACAAACTACA
Statistics
Matches: 129, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 129 1.00
ACGTcount: A:0.42, C:0.18, G:0.18, T:0.22
Consensus pattern (127 bp):
TTCAGGAAATGTTCGGAACAGAGAACTAACAATAATACAACGCCGCATTCTCCGAAGATTGAGGA
ACAAGACGAGATCTATTAAGAGAAAGATTTATCCGAGAAAAAATCTTAACAGTTACATCCAA
Left flanking sequence: Indices 31910 -- 32409
TCTTAAGTAAAGTTCAGTTTACTTTTTCGATTCGGAACTCTTAGTCGAGCTGATGGCGAGATCGA
TTTTTTGTTCGAGGTTAAAGAGGAAAGAGAGGAACCACCGCCCTATGGTGCTTTTACGAAAGTAC
GATCACCGGTGGCTAATACCTTCTCGACACTATCGAACCGTCAATCCACTCTCAATAGATGCTGC
CCCTTAAACAGTGTGAAAGGGTGGTAGGTAGAACTAAGGGCGTCAGGTCTTGTTTGGCCCGGTAA
TGGAATCAATAGCTTGCCCGAACAGGGATATAGGAAGAAGCTTTGTTTTCGCGGAGAATCTACGC
TCTGTAAACAAGGGTCGACCTTAAAGGGTAATTATCGATAGACGAGTGGGCGAGACGGAAATGGG
GTCGCGGCTAGAAGTTTTGGGTTCGACTCCCATAGCCCCGATGTGGCGAAAAAGACTGATTCAAC
GAGATAAGAAATGCCTGCATTAAGATTTAAAACTTGTCGTCTACT
Right flanking sequence: Indices 32666 -- 33165
ACAAACTACACGAAAGTTGCCCCTTTTTCATGGGGATTTATCCATCACAGAGATGCACAGAGGAA
CAGAACGAACTTCATATATCCCTTTTCCACTCAATCCAGAAACAAGATCGGACGTTATTCCGGTT
CGTCTCCATTTTCGTGAAACTATTCCTCAAGCAAGGCAGCCGATAAGTCATCGAAGGGTTTGTGT
GAATAATGGAATGGTAAGCATTACTCATTTTAAAGTATCCCACGGTGATTTAATATCTTTTAAAG
AAGCGAGAACCCGCGGTGAAGAAATAAGGAGATCTTTCTATATCGAAATATCAGTTGAAAAAATC
ATAGGCAAATTCCTGGATCACCCGGTAAGAATGTGGAGAAGAACCAAAACAGAATGGTTCCGCCT
ACTCAAAACTAAGAGGGGATGCCGCCTACTACTAAAATCCCGGTTTTTACAACAGTTGCGTTCTT
CTATGCAAGAAGAAGACTTAGAAAAAACAAAGAAGTTTGGATCCG
Found at i:46326 original size:127 final size:127
Alignment explanation
Indices: 46146--46399 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
46136 ATCCTCTGGC
46146 CCAAGCTTGCCAAATACCCGTTAAGAAGAAGCTTAAAACAGCGTGTTTTTCGTCATCAATAGGAG
1 CCAAGCTTGCCAAATACCCGTTAAGAAGAAGCTTAAAACAGCGTGTTTTTCGTCATCAATAGGAG
46211 AGGCTTACTCAAGAGTTCTTGCTTCTAGACCTGAAAAGAGCTTATTCGATTCCGTCTGTGGG
66 AGGCTTACTCAAGAGTTCTTGCTTCTAGACCTGAAAAGAGCTTATTCGATTCCGTCTGTGGG
46273 CCAAGCTTGCCAAATACCCGTTAAGAAGAAGCTTAAAACAGCGTGTTTTTCGTCATCAATAGGAG
1 CCAAGCTTGCCAAATACCCGTTAAGAAGAAGCTTAAAACAGCGTGTTTTTCGTCATCAATAGGAG
46338 AGGCTTACTCAAGAGTTCTTGCTTCTAGACCTGAAAAGAGCTTATTCGATTCCGTCTGTGGG
66 AGGCTTACTCAAGAGTTCTTGCTTCTAGACCTGAAAAGAGCTTATTCGATTCCGTCTGTGGG
46400 GCCATTTGAA
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.28
Consensus pattern (127 bp):
CCAAGCTTGCCAAATACCCGTTAAGAAGAAGCTTAAAACAGCGTGTTTTTCGTCATCAATAGGAG
AGGCTTACTCAAGAGTTCTTGCTTCTAGACCTGAAAAGAGCTTATTCGATTCCGTCTGTGGG
Left flanking sequence: Indices 45646 -- 46145
GCTTGACAAGATCTCCTTCTTTAATAGCGGTATCACTACCAAAGACAACAATCCCTACATTCTCA
TTCTCAAGATTCAACGCTATTCCTTTCACACCGCTGGCAAATTCAACCATTTCCCCAGCTTGAAT
CTCGTTCAATCCATAAACACGTGCAATCCCATCTCCAACTGAGACCACTCGACCGATCTCATCCA
CTTTCAAATTCGTGTAAAAGTTGGTAATTCTACTTTCTAATAGAGTCGTTAGTTCCGCAGCTCTG
GGAGAGAATTCCATAATTCAATTAAAGATCGAGTCAAGGAGGAATGCCGCTTTACAAATATACGA
ACCCCATTAGACAGATGATAGGACAGGGACGGACGGGCTAAGAAGACCCATTCACTCTCTGTTCC
ATTCTTGCAGATATCAGCTATAATGGAAAGAAGGAATTCCTTGTCGTCAGAGCCCCCGTGAATCT
CTTGGGCCAGCTCCTTCCAAGTGTGCCCATAAGGCATCCTCTGGC
Right flanking sequence: Indices 46400 -- 46899
GCCATTTGAAAACAGCTTATTCATGCCATCTCTTGCTAACAAGCCCTTCTATTCCTCAAGTCCCT
ATGGAAGTTCCTTGCCAACTATCGACCCCGATCTCTTTTCATTTGTTTTGGGTATTACCAACTTC
GTCAATCACACTAAAGCAGAGCACCCAACTATGGCAAGGCCTCCTTAAGGGTTAGGTTAGTCAAT
CCGGCCCGAGACGCGCCCTAGTAGTAATGGTGACAAAACCGCCGTAGGAATGGAGACCTTTCAAT
AGAGCGGAGGCGAACTGATCAACGAGAAAGAGGCCCTACTCACTACAGACGAATACACCACAAGA
TCGAACTGCACTCATGCCTCTCCCGCATCAGCCCCCCCCTACGTAGTGATTCTATCAATCATGTA
CGTGGGTAGGACCCTCCATTCTGATTGGTATATCATGAAAAAAGAAAGCCATTTGCACCAGGCGC
TTAGTATTAGTAAAGGGCTTTCCCTTGCCCAGATGTTCGCCTTTC
Found at i:54134 original size:127 final size:127
Alignment explanation
Indices: 53908--54162 Score: 510
Period size: 127 Copynumber: 2.0 Consensus size: 127
53898 TCCTGCCCTG
53908 CGCCTCTCTAGGCATGAGCGATAGCTCATGACTGGTATATGGATCTCTCTATGTAGTGGTCGGCC
1 CGCCTCTCTAGGCATGAGCGATAGCTCATGACTGGTATATGGATCTCTCTATGTAGTGGTCGGCC
53973 TTCTAGAAGCTTCGCCAGAAGCGACTAGTCGCTTCCCGAATGCCTCTTTACTTTAGTATGGT
66 TTCTAGAAGCTTCGCCAGAAGCGACTAGTCGCTTCCCGAATGCCTCTTTACTTTAGTATGGT
54035 CGCCTCTCTAGGCATGAGCGATAGCTCATGACTGGTATATGGATCTCTCTATGTAGTGGTCGGCC
1 CGCCTCTCTAGGCATGAGCGATAGCTCATGACTGGTATATGGATCTCTCTATGTAGTGGTCGGCC
54100 TTCTAGAAGCTTCGCCAGAAGCGACTAGTCGCTTCCCGAATGCCTCTTTACTTTAGTATGGT
66 TTCTAGAAGCTTCGCCAGAAGCGACTAGTCGCTTCCCGAATGCCTCTTTACTTTAGTATGGT
54162 C
1 C
54163 TAGTCTTTTT
Statistics
Matches: 128, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 128 1.00
ACGTcount: A:0.20, C:0.25, G:0.24, T:0.31
Consensus pattern (127 bp):
CGCCTCTCTAGGCATGAGCGATAGCTCATGACTGGTATATGGATCTCTCTATGTAGTGGTCGGCC
TTCTAGAAGCTTCGCCAGAAGCGACTAGTCGCTTCCCGAATGCCTCTTTACTTTAGTATGGT
Left flanking sequence: Indices 53408 -- 53907
TCCACCATAGTGTGAGCTGGGAGCAGCTCCGAAAAGCGAGGCCTACTTAAAAATTAGCTTTCAAC
AACGTCAACAACACCACGAAAAAAGTAAACTATGGTTGCCCACTGATCTTCTCATAGGTGAAATC
CAATCCCTTCGCCTCGCGGAAGCGAGAAAGCGAGCAGCAAGCTGAAAAAGCCCTTTCCCCTTTCT
CTAATAATAAGGGTCGATAGAGTCATAGCTCCAACCTATACAAGGGGCAAGCCAAAAGCAGCTGA
AGGTCATAGCCTTACCTTATTATTATAAAAAGGGGAGCTTCATATTATATTTATTTTTAGAAAAA
TACTACAAATTAAAAACTAGGTTGCTTGGCGCCCTACTCCCCAACAACTACAAGGGTGCTTGCTT
GCTGGCATCAAAGCCCTTCATTATTATTAGTAAGATGGGGCGGAGGGCGCACAATCCCTTCTCTG
CTCCTTTCCTGAGCGTTTCACACTAAGCTCTTCGATCCTGCCCTG
Right flanking sequence: Indices 54163 -- 54662
TAGTCTTTTTCCAATGCCTCCTTCCTTGCCACCAACGTACGCTACTAGGATAGTAAGCAAGCTAC
CTTGCTTGCATTCTAAGAAGCGACTAGTCGCTTCCCGAATGCCTCTTTACTTTAGTATGGTCTAG
TCTTTTTCCAATGCCTCCTTCCTTGCCACCAACGTACGCTACTAGGATAGTAAGCAAGCTACCTT
GCTTGCATTCTATTCTATAAGCGGAGCTAAGCGGAGCGACTTGTCGAGTCTACGAAGCTTCGTAG
TTGCTTCCCCCCCCCCTTTGCCTCGCCATGCCACTAGATCCATAATGACCGGCGAGTCTGAACAT
GTACGAATATAACCACGCGGAGCGCCGGACCGGCCTATCGAAGAAAGAGATCATTGAGCCTATTT
AGCCGAGCTAAGTAAGGTTTGGAACCCTAGTTTTTTAGTATTTATCTATTCTAATAATATAATAA
TAAGCTGGGAATCGCAAGAATTGAGAAGTCTTCCATTGAGGGGTG
Found at i:54247 original size:127 final size:127
Alignment explanation
Indices: 54116--54369 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
54106 AAGCTTCGCC
54116 AGAAGCGACTAGTCGCTTCCCGAATGCCTCTTTACTTTAGTATGGTCTAGTCTTTTTCCAATGCC
1 AGAAGCGACTAGTCGCTTCCCGAATGCCTCTTTACTTTAGTATGGTCTAGTCTTTTTCCAATGCC
54181 TCCTTCCTTGCCACCAACGTACGCTACTAGGATAGTAAGCAAGCTACCTTGCTTGCATTCTA
66 TCCTTCCTTGCCACCAACGTACGCTACTAGGATAGTAAGCAAGCTACCTTGCTTGCATTCTA
54243 AGAAGCGACTAGTCGCTTCCCGAATGCCTCTTTACTTTAGTATGGTCTAGTCTTTTTCCAATGCC
1 AGAAGCGACTAGTCGCTTCCCGAATGCCTCTTTACTTTAGTATGGTCTAGTCTTTTTCCAATGCC
54308 TCCTTCCTTGCCACCAACGTACGCTACTAGGATAGTAAGCAAGCTACCTTGCTTGCATTCTA
66 TCCTTCCTTGCCACCAACGTACGCTACTAGGATAGTAAGCAAGCTACCTTGCTTGCATTCTA
54370 TTCTATAAGC
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.22, C:0.28, G:0.17, T:0.32
Consensus pattern (127 bp):
AGAAGCGACTAGTCGCTTCCCGAATGCCTCTTTACTTTAGTATGGTCTAGTCTTTTTCCAATGCC
TCCTTCCTTGCCACCAACGTACGCTACTAGGATAGTAAGCAAGCTACCTTGCTTGCATTCTA
Left flanking sequence: Indices 53616 -- 54115
TCGATAGAGTCATAGCTCCAACCTATACAAGGGGCAAGCCAAAAGCAGCTGAAGGTCATAGCCTT
ACCTTATTATTATAAAAAGGGGAGCTTCATATTATATTTATTTTTAGAAAAATACTACAAATTAA
AAACTAGGTTGCTTGGCGCCCTACTCCCCAACAACTACAAGGGTGCTTGCTTGCTGGCATCAAAG
CCCTTCATTATTATTAGTAAGATGGGGCGGAGGGCGCACAATCCCTTCTCTGCTCCTTTCCTGAG
CGTTTCACACTAAGCTCTTCGATCCTGCCCTGCGCCTCTCTAGGCATGAGCGATAGCTCATGACT
GGTATATGGATCTCTCTATGTAGTGGTCGGCCTTCTAGAAGCTTCGCCAGAAGCGACTAGTCGCT
TCCCGAATGCCTCTTTACTTTAGTATGGTCGCCTCTCTAGGCATGAGCGATAGCTCATGACTGGT
ATATGGATCTCTCTATGTAGTGGTCGGCCTTCTAGAAGCTTCGCC
Right flanking sequence: Indices 54370 -- 54869
TTCTATAAGCGGAGCTAAGCGGAGCGACTTGTCGAGTCTACGAAGCTTCGTAGTTGCTTCCCCCC
CCCCTTTGCCTCGCCATGCCACTAGATCCATAATGACCGGCGAGTCTGAACATGTACGAATATAA
CCACGCGGAGCGCCGGACCGGCCTATCGAAGAAAGAGATCATTGAGCCTATTTAGCCGAGCTAAG
TAAGGTTTGGAACCCTAGTTTTTTAGTATTTATCTATTCTAATAATATAATAATAAGCTGGGAAT
CGCAAGAATTGAGAAGTCTTCCATTGAGGGGTGGGAAAGACAGGTTCGGAAATGGCCGGATTAGC
AGGAGGAAGGGCCCTGAAACAAAGGTGTACGTACATAAATAAAGAGGCTGGTTATGGCCTTTACT
TGATAGGGCTCCTTCCCATTTATCTTGACCGGGAAGAGGGGGGAGGCTCTTGCGGAAGCCCTGCC
CGCCCTTCTCTATTTTGAGGGATCTCTCATATTGAGGCTTCCCGG
Found at i:57781 original size:127 final size:127
Alignment explanation
Indices: 57555--57809 Score: 510
Period size: 127 Copynumber: 2.0 Consensus size: 127
57545 ATCCTAATTG
57555 CCATGGTTCCGCTGCATCACAAGGAGCAATTGTGAGGAATAGCCATTCTAGAACAATCATTTTGT
1 CCATGGTTCCGCTGCATCACAAGGAGCAATTGTGAGGAATAGCCATTCTAGAACAATCATTTTGT
57620 TTGCTTCATTCTTTGACTGCTCTGCTCCCCCCCCAAAAAAAGAGAGACTTGTTCTTGCTCTC
66 TTGCTTCATTCTTTGACTGCTCTGCTCCCCCCCCAAAAAAAGAGAGACTTGTTCTTGCTCTC
57682 CCATGGTTCCGCTGCATCACAAGGAGCAATTGTGAGGAATAGCCATTCTAGAACAATCATTTTGT
1 CCATGGTTCCGCTGCATCACAAGGAGCAATTGTGAGGAATAGCCATTCTAGAACAATCATTTTGT
57747 TTGCTTCATTCTTTGACTGCTCTGCTCCCCCCCCAAAAAAAGAGAGACTTGTTCTTGCTCTC
66 TTGCTTCATTCTTTGACTGCTCTGCTCCCCCCCCAAAAAAAGAGAGACTTGTTCTTGCTCTC
57809 C
1 C
57810 TAATTCAGGA
Statistics
Matches: 128, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 128 1.00
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31
Consensus pattern (127 bp):
CCATGGTTCCGCTGCATCACAAGGAGCAATTGTGAGGAATAGCCATTCTAGAACAATCATTTTGT
TTGCTTCATTCTTTGACTGCTCTGCTCCCCCCCCAAAAAAAGAGAGACTTGTTCTTGCTCTC
Left flanking sequence: Indices 57055 -- 57554
AGCATTTCGAAATATAGGTCTAACCACCTCAACTCTCCGTTTCTGGCATGCTATAGTTATAAAAG
TCTCTCGACGACGGGAATGGGAGATTACCGGTAAGCCAGATGCTTCGCGAACCATATTCCACTTT
AAGGCATTTCGTTGCACTTACTTAAATCACCCTCGTGAAGAGGCGCACTCCGATACCATTGATGT
CCAATAGCTTTGATAGTAATGGCTGGATCTACTACTACCTCGTCCATTGAGTATAACAGAGCAAA
TGATGGTATAGCAATGAACATCGGGATGATACTAGGAAATATGGTCCGAAGAATCTCGATAGTAG
TTCCATGAACAATCCTTTGCGGGATTGGATTTTTTTTATAGTTGAAATGCCATAAAGCGCGAACC
AAGATCCGTGATACGAAAACAAAAATCAGAATGAGGAAGAAAAAGATATCGTGATGTAAGTCCAT
TATTCCTTGCATCATAGGTGTTGCTGCGTCTTGAGATCCTAATTG
Right flanking sequence: Indices 57810 -- 58309
TAATTCAGGAAGACGGAAATCGCCGGTTGGGTTGGTCCAACCAAGAAAGGCATGGGAGTCTTTGG
GCATTGTTTGGGTGACTGCTCTGCTCCCCCCCCAAAAAAAGAGAGACTTGTTCTTGCTCTCCTAA
TTCAGGAAGACGGAAATCGCCGGTTGGGTTGGTCCAACCAAGAAAGGCATGGGAGTCTTTGGGCA
TTGTTTGGGATTTCATACGCTATTTCGATTTAAATTTCACTTTCAAATAATATATTAGTTAAAAC
CTGCAATCTCGGTCGGAGATAGCAGCTCGGAATGGAGCGAAGGAACTCAACCTTATTTAAATTTA
TTGAACTCGAAGGCGCGACAATTCATAATAGAATAACTTCGGGTGGGCGCAACATATCTACACTT
CCATTCCAGTACAAGGAAGACCCAGCAGACTCAAGGCTAACGTCTGATTAGTCTGATTAGTACGA
TCTAGCGGGCGCAGGAAAATAAAGCTAACTTGGCGAGCTCGAAGT
Found at i:57891 original size:127 final size:127
Alignment explanation
Indices: 57760--58013 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
57750 CTTCATTCTT
57760 TGACTGCTCTGCTCCCCCCCCAAAAAAAGAGAGACTTGTTCTTGCTCTCCTAATTCAGGAAGACG
1 TGACTGCTCTGCTCCCCCCCCAAAAAAAGAGAGACTTGTTCTTGCTCTCCTAATTCAGGAAGACG
57825 GAAATCGCCGGTTGGGTTGGTCCAACCAAGAAAGGCATGGGAGTCTTTGGGCATTGTTTGGG
66 GAAATCGCCGGTTGGGTTGGTCCAACCAAGAAAGGCATGGGAGTCTTTGGGCATTGTTTGGG
57887 TGACTGCTCTGCTCCCCCCCCAAAAAAAGAGAGACTTGTTCTTGCTCTCCTAATTCAGGAAGACG
1 TGACTGCTCTGCTCCCCCCCCAAAAAAAGAGAGACTTGTTCTTGCTCTCCTAATTCAGGAAGACG
57952 GAAATCGCCGGTTGGGTTGGTCCAACCAAGAAAGGCATGGGAGTCTTTGGGCATTGTTTGGG
66 GAAATCGCCGGTTGGGTTGGTCCAACCAAGAAAGGCATGGGAGTCTTTGGGCATTGTTTGGG
58014 ATTTCATACG
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.25
Consensus pattern (127 bp):
TGACTGCTCTGCTCCCCCCCCAAAAAAAGAGAGACTTGTTCTTGCTCTCCTAATTCAGGAAGACG
GAAATCGCCGGTTGGGTTGGTCCAACCAAGAAAGGCATGGGAGTCTTTGGGCATTGTTTGGG
Left flanking sequence: Indices 57260 -- 57759
TGATAGTAATGGCTGGATCTACTACTACCTCGTCCATTGAGTATAACAGAGCAAATGATGGTATA
GCAATGAACATCGGGATGATACTAGGAAATATGGTCCGAAGAATCTCGATAGTAGTTCCATGAAC
AATCCTTTGCGGGATTGGATTTTTTTTATAGTTGAAATGCCATAAAGCGCGAACCAAGATCCGTG
ATACGAAAACAAAAATCAGAATGAGGAAGAAAAAGATATCGTGATGTAAGTCCATTATTCCTTGC
ATCATAGGTGTTGCTGCGTCTTGAGATCCTAATTGCCATGGTTCCGCTGCATCACAAGGAGCAAT
TGTGAGGAATAGCCATTCTAGAACAATCATTTTGTTTGCTTCATTCTTTGACTGCTCTGCTCCCC
CCCCAAAAAAAGAGAGACTTGTTCTTGCTCTCCCATGGTTCCGCTGCATCACAAGGAGCAATTGT
GAGGAATAGCCATTCTAGAACAATCATTTTGTTTGCTTCATTCTT
Right flanking sequence: Indices 58014 -- 58513
ATTTCATACGCTATTTCGATTTAAATTTCACTTTCAAATAATATATTAGTTAAAACCTGCAATCT
CGGTCGGAGATAGCAGCTCGGAATGGAGCGAAGGAACTCAACCTTATTTAAATTTATTGAACTCG
AAGGCGCGACAATTCATAATAGAATAACTTCGGGTGGGCGCAACATATCTACACTTCCATTCCAG
TACAAGGAAGACCCAGCAGACTCAAGGCTAACGTCTGATTAGTCTGATTAGTACGATCTAGCGGG
CGCAGGAAAATAAAGCTAACTTGGCGAGCTCGAAGTCGACTTAAGCTATCACGCTTTGGGGGCCT
TCACTCCCCCCCTTTAGATAGCGAGAAAGGGGTCGTAGGTGAATCTCTCCGTATAATGCCTTATT
CCGGGGGCTTTCAGTCACGTCTTCGTTTTTGCTAGTTTGGTCATTGACCCTTTAGCCTACCTTTC
GTTTATGTACTACAATTCCAGAACCCTTTGCTTGTGTTTGTCAGC
Found at i:79629 original size:127 final size:127
Alignment explanation
Indices: 79403--79656 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
79393 TGCGCCAGGG
79403 AAAAGAATAGAAGAAGCATTTGACTCCTTCATGCATGCTCCACTTGGCTCGGGGGGATATAGCTC
1 AAAAGAATAGAAGAAGCATTTGACTCCTTCATGCATGCTCCACTTGGCTCGGGGGGATATAGCTC
79468 AGTTGGTAGAGCTCCGCTCTTGCAATTGGGTCGTTGCGATTACGGGTTGGATGTCTAATTGT
66 AGTTGGTAGAGCTCCGCTCTTGCAATTGGGTCGTTGCGATTACGGGTTGGATGTCTAATTGT
79530 AAAAGAATAGAAGAAGCATTTGACTCCTTCATGCATGCTCCACTTGGCTCGGGGGGATATAGCTC
1 AAAAGAATAGAAGAAGCATTTGACTCCTTCATGCATGCTCCACTTGGCTCGGGGGGATATAGCTC
79595 AGTTGGTAGAGCTCCGCTCTTGCAATTGGGTCGTTGCGATTACGGGTTGGATGTCTAATTGT
66 AGTTGGTAGAGCTCCGCTCTTGCAATTGGGTCGTTGCGATTACGGGTTGGATGTCTAATTGT
79657 CCAGGCGGTA
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (127 bp):
AAAAGAATAGAAGAAGCATTTGACTCCTTCATGCATGCTCCACTTGGCTCGGGGGGATATAGCTC
AGTTGGTAGAGCTCCGCTCTTGCAATTGGGTCGTTGCGATTACGGGTTGGATGTCTAATTGT
Left flanking sequence: Indices 78903 -- 79402
TGCAATTTGCTCACTTCGGGAAGAACGTGAAATTCTTTTTCCTTTCTGCAGGGACCAGGAGATTG
GATCTAGCCGTAAGAAGAATGCTTGGTATAAATAACTCGCTTCTTGGTCTTCGACCCCCTCAGTC
ACTACGAACGCCCCCGATCAGTGCAATGGGATGTGTCTATTTATCTATCTCTTGACTCGAAATGG
CGAGCAGGTTATAAAAAGGATCTTAGAGTGTCTAGGGTTGGGCCAGGAGGGTCTCTTAACACCTT
CTTTTTTCTTCTCATCGGAGTTATTTCACAAAGACTTGCCATGGTAAGGAAGAAGGGGGGAACAA
GCACACTCGGAGAGCGCAGTACAACGGGGAGTTGTATGCTGCGTTCGGGAAGGATGAATCGCTTC
CGAAAAGGAATCTATAGATTCTCTCCCAATTGGTTGGACCGTAGGTGCGATGATTTACTTCACGG
GCGAGGTCTCTGGTTCAAGTCCAGGATGGCCCAGCTGCGCCAGGG
Right flanking sequence: Indices 79657 -- 80156
CCAGGCGGTAATGATAGTATTTTGTACCTGAACCGGTGGCTCACTTTTTCTAAGTAATGGGAAAG
AGGACCGAAACATGCCACCGAAAGACTCTACTGAGACAAAGATGGGCTGTCAAGAACGTAGAGGA
GGTAGGATGGGCAGTTGGTCAGATCTAGTATGGATCGTACATGGACGGTAGTTGGAGTCGGCGGC
TCTCCTAGGGTTCCCTCATCTGGGATCCCTGGGGAAGAGGATCAAGTTGGCCCTTGCGAACGGCT
TGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGCGGCAAAAGGAAGGAAAATCCATGGACC
GACCCCATTGTCTCCACCCCGTAGGAACTGGAAGAGGATCAAGTTGGCCCTTGCGAACGGCTTGA
TGCACTATCTCCCTTCAACCCTTTGAGCGAAATGCGGCAAAAGGAAGGAAAATCCATGGACCGAC
CCCATTGTCTCCACCCCGTAGGAACTGGGGGATCGCCCCAAGGAC
Found at i:80110 original size:127 final size:127
Alignment explanation
Indices: 79884--80139 Score: 512
Period size: 127 Copynumber: 2.0 Consensus size: 127
79874 GGATCCCTGG
79884 GGAAGAGGATCAAGTTGGCCCTTGCGAACGGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCG
1 GGAAGAGGATCAAGTTGGCCCTTGCGAACGGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCG
79949 AAATGCGGCAAAAGGAAGGAAAATCCATGGACCGACCCCATTGTCTCCACCCCGTAGGAACT
66 AAATGCGGCAAAAGGAAGGAAAATCCATGGACCGACCCCATTGTCTCCACCCCGTAGGAACT
80011 GGAAGAGGATCAAGTTGGCCCTTGCGAACGGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCG
1 GGAAGAGGATCAAGTTGGCCCTTGCGAACGGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCG
80076 AAATGCGGCAAAAGGAAGGAAAATCCATGGACCGACCCCATTGTCTCCACCCCGTAGGAACT
66 AAATGCGGCAAAAGGAAGGAAAATCCATGGACCGACCCCATTGTCTCCACCCCGTAGGAACT
80138 GG
1 GG
80140 GGGATCGCCC
Statistics
Matches: 129, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 129 1.00
ACGTcount: A:0.27, C:0.28, G:0.25, T:0.20
Consensus pattern (127 bp):
GGAAGAGGATCAAGTTGGCCCTTGCGAACGGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCG
AAATGCGGCAAAAGGAAGGAAAATCCATGGACCGACCCCATTGTCTCCACCCCGTAGGAACT
Left flanking sequence: Indices 79384 -- 79883
TGGCCCAGCTGCGCCAGGGAAAAGAATAGAAGAAGCATTTGACTCCTTCATGCATGCTCCACTTG
GCTCGGGGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCAATTGGGTCGTTGCGATTACGGG
TTGGATGTCTAATTGTAAAAGAATAGAAGAAGCATTTGACTCCTTCATGCATGCTCCACTTGGCT
CGGGGGGATATAGCTCAGTTGGTAGAGCTCCGCTCTTGCAATTGGGTCGTTGCGATTACGGGTTG
GATGTCTAATTGTCCAGGCGGTAATGATAGTATTTTGTACCTGAACCGGTGGCTCACTTTTTCTA
AGTAATGGGAAAGAGGACCGAAACATGCCACCGAAAGACTCTACTGAGACAAAGATGGGCTGTCA
AGAACGTAGAGGAGGTAGGATGGGCAGTTGGTCAGATCTAGTATGGATCGTACATGGACGGTAGT
TGGAGTCGGCGGCTCTCCTAGGGTTCCCTCATCTGGGATCCCTGG
Right flanking sequence: Indices 80140 -- 80639
GGGATCGCCCCAAGGACGCCTTCGGCATCCAGGGGTCACGGACCGACCATAGAACCCTGTTCAAT
AAGTGGAACGCATTAGCTGTCCGCTCTCAGGTTGGGCAATAAGGGTCGGAGAAGGGCAATCACTC
ATTCTTAAAACCAGCATTCTTAAGACCAATGAAAGAGTCGGGCGGAAAAGGGGGGAAAGCTCTCC
CTTCCTGGTTCTCCTGTAGCTGGATCCTCCGGAACCACAAGAATCCTTAGTTAGAATGGGATTCC
AGCTCAGCACCTTTTGAGATTTTGAGAAGAGTTGCTCTTTGGAGAGCACAGTACGATGAAAGTTG
TAAGCTGTGTTCGGGGGGGAGTTATTGTCTTTCGTTGGCCTCTATGGTAGAATCAGTCGGGGACC
GTCGAGGCGGTGGTTTACCCTGTGGCGGATGTCAGCGGTTCGAGTCCGCTTATCTCCAACTCGTG
AACTTAGCCGATACAAAGCTATATGATAGCACCCAATTTTTCCGA
Found at i:80944 original size:127 final size:127
Alignment explanation
Indices: 80733--80986 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
80723 AGCCTTCAAA
80733 TAAAAAGTTAAGGGCGAGGTTCAAACGAGGAAAGGCTTACGGTGGATACCTAGGCACCCAGAGAC
1 TAAAAAGTTAAGGGCGAGGTTCAAACGAGGAAAGGCTTACGGTGGATACCTAGGCACCCAGAGAC
80798 GAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGGGAGTTGAAAATAAGCATAGATCCGGAG
66 GAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGGGAGTTGAAAATAAGCATAGATCCGGAG
80860 TAAAAAGTTAAGGGCGAGGTTCAAACGAGGAAAGGCTTACGGTGGATACCTAGGCACCCAGAGAC
1 TAAAAAGTTAAGGGCGAGGTTCAAACGAGGAAAGGCTTACGGTGGATACCTAGGCACCCAGAGAC
80925 GAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGGGAGTTGAAAATAAGCATAGATCCGGAG
66 GAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGGGAGTTGAAAATAAGCATAGATCCGGAG
80987 ATTCCCGAAT
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.35, C:0.16, G:0.34, T:0.16
Consensus pattern (127 bp):
TAAAAAGTTAAGGGCGAGGTTCAAACGAGGAAAGGCTTACGGTGGATACCTAGGCACCCAGAGAC
GAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGGGAGTTGAAAATAAGCATAGATCCGGAG
Left flanking sequence: Indices 80233 -- 80732
AGGTTGGGCAATAAGGGTCGGAGAAGGGCAATCACTCATTCTTAAAACCAGCATTCTTAAGACCA
ATGAAAGAGTCGGGCGGAAAAGGGGGGAAAGCTCTCCCTTCCTGGTTCTCCTGTAGCTGGATCCT
CCGGAACCACAAGAATCCTTAGTTAGAATGGGATTCCAGCTCAGCACCTTTTGAGATTTTGAGAA
GAGTTGCTCTTTGGAGAGCACAGTACGATGAAAGTTGTAAGCTGTGTTCGGGGGGGAGTTATTGT
CTTTCGTTGGCCTCTATGGTAGAATCAGTCGGGGACCGTCGAGGCGGTGGTTTACCCTGTGGCGG
ATGTCAGCGGTTCGAGTCCGCTTATCTCCAACTCGTGAACTTAGCCGATACAAAGCTATATGATA
GCACCCAATTTTTCCGATTGGGCGGTTCGATCTATGATTTCTCATTCATGGACGTTGATAAGATC
CTTCCATTTAGCAGCACCTTAGGAGGGTATAGCATAGCCTTCAAA
Right flanking sequence: Indices 80987 -- 81486
ATTCCCGAATAGGTCAACCTTTCGAACTGCTGCTGAATCCATGGGCAGGCAAGAGACAACCTGGC
AAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGC
GAAATGGGAGCAGCCTAAACCGTGAAAACGGGGTTGTGGGAGAGCAATCCAAGCGTCGTGCTGCT
AGGCGAAGCGGTGGAGTGCTGCACCCTAGATGGCGAGAGTCCAGTAGCCGAAAGCACACTAGCTT
ACGCTCTGACCCGAGTAGCATGGGGCACGTGGAATCCCGTGTGAATCCGCAAGGACCACCTTGCA
AGGCTAAATACTCCTGGGTGACCGATAGCGAAGTAGTACCGTGAGGGAAGGGTGAAAAGAACCCC
CATCGGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCCCAGGGCTCT
GACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCATAGGCAGTG
Found at i:81869 original size:127 final size:127
Alignment explanation
Indices: 81643--81897 Score: 510
Period size: 127 Copynumber: 2.0 Consensus size: 127
81633 GTTGAAGAAT
81643 CAGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGA
1 CAGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGA
81708 AATGCGTTGAGGCGCAGCAGTTGACTGGACATCTAGGGGTAAAGCACTGTTTCGGTGCGGGC
66 AATGCGTTGAGGCGCAGCAGTTGACTGGACATCTAGGGGTAAAGCACTGTTTCGGTGCGGGC
81770 CAGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGA
1 CAGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGA
81835 AATGCGTTGAGGCGCAGCAGTTGACTGGACATCTAGGGGTAAAGCACTGTTTCGGTGCGGGC
66 AATGCGTTGAGGCGCAGCAGTTGACTGGACATCTAGGGGTAAAGCACTGTTTCGGTGCGGGC
81897 C
1 C
81898 GCGAGAGCGG
Statistics
Matches: 128, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 128 1.00
ACGTcount: A:0.21, C:0.22, G:0.35, T:0.22
Consensus pattern (127 bp):
CAGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGA
AATGCGTTGAGGCGCAGCAGTTGACTGGACATCTAGGGGTAAAGCACTGTTTCGGTGCGGGC
Left flanking sequence: Indices 81143 -- 81642
AACGGGGTTGTGGGAGAGCAATCCAAGCGTCGTGCTGCTAGGCGAAGCGGTGGAGTGCTGCACCC
TAGATGGCGAGAGTCCAGTAGCCGAAAGCACACTAGCTTACGCTCTGACCCGAGTAGCATGGGGC
ACGTGGAATCCCGTGTGAATCCGCAAGGACCACCTTGCAAGGCTAAATACTCCTGGGTGACCGAT
AGCGAAGTAGTACCGTGAGGGAAGGGTGAAAAGAACCCCCATCGGGGAGTGAAATAGAACATGAA
ACCGTAAGCTCCCAAGCAGTGGGAGGAGCCCAGGGCTCTGACCGCGTGCCTGTTGAAGAATGAGC
CGGCGACTCATAGGCAGTGGCTTGGTTAAGGGAACCCACCGGAGCCGTAGCGAAAGCGAGTCTTC
ATAGGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCT
TGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAAT
Right flanking sequence: Indices 81898 -- 82397
GCGAGAGCGGTACCAAATCGAGGCAAACTCTGAATACTAGATATGACCTCAAAATAACAGGGGTC
AAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACC
AGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGGAGGTAGGGGTGCAGAGACAGCCAGGAGGT
TTGCCTAGAAGCAGCCACCCTTGAAAGAGTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCG
AAGATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTAAAAATGCATCGGTAGGGGAGCG
TTCCGCCTTAGAGAGAAGCACCTGCGCGAGCAGCGGTGGACGAAGCGGAAGCGAGAATGTCGGCT
TGAGTAACGCAAACATTGGTGAGAATCCAATGCCCCGAAAACCTAAGGGTTCCTCCGCAAGGTTC
GTCCACGGAGGGTGAGTCAGGGCCTAAGATCAGGCCGAAAGGCGT
Found at i:82818 original size:127 final size:127
Alignment explanation
Indices: 82592--82846 Score: 510
Period size: 127 Copynumber: 2.0 Consensus size: 127
82582 GAAGTAACCC
82592 ATGCCATACTCCCAGGAAAAGCTCGAACGACCTTCAACAAAAGGGTACCTGTACCCGAAACCGAC
1 ATGCCATACTCCCAGGAAAAGCTCGAACGACCTTCAACAAAAGGGTACCTGTACCCGAAACCGAC
82657 ACAGGTGGGTAGGTAGAGAATACCTAGGGGCGCGAGACAACTCTCTCTAAGGAACTCGGCAA
66 ACAGGTGGGTAGGTAGAGAATACCTAGGGGCGCGAGACAACTCTCTCTAAGGAACTCGGCAA
82719 ATGCCATACTCCCAGGAAAAGCTCGAACGACCTTCAACAAAAGGGTACCTGTACCCGAAACCGAC
1 ATGCCATACTCCCAGGAAAAGCTCGAACGACCTTCAACAAAAGGGTACCTGTACCCGAAACCGAC
82784 ACAGGTGGGTAGGTAGAGAATACCTAGGGGCGCGAGACAACTCTCTCTAAGGAACTCGGCAA
66 ACAGGTGGGTAGGTAGAGAATACCTAGGGGCGCGAGACAACTCTCTCTAAGGAACTCGGCAA
82846 A
1 A
82847 ATAGCCCCGT
Statistics
Matches: 128, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 128 1.00
ACGTcount: A:0.33, C:0.27, G:0.25, T:0.15
Consensus pattern (127 bp):
ATGCCATACTCCCAGGAAAAGCTCGAACGACCTTCAACAAAAGGGTACCTGTACCCGAAACCGAC
ACAGGTGGGTAGGTAGAGAATACCTAGGGGCGCGAGACAACTCTCTCTAAGGAACTCGGCAA
Left flanking sequence: Indices 82092 -- 82591
TTTGCCTAGAAGCAGCCACCCTTGAAAGAGTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCC
GAAGATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTAAAAATGCATCGGTAGGGGAGC
GTTCCGCCTTAGAGAGAAGCACCTGCGCGAGCAGCGGTGGACGAAGCGGAAGCGAGAATGTCGGC
TTGAGTAACGCAAACATTGGTGAGAATCCAATGCCCCGAAAACCTAAGGGTTCCTCCGCAAGGTT
CGTCCACGGAGGGTGAGTCAGGGCCTAAGATCAGGCCGAAAGGCGTAGTCGATGGACAACAGGTG
AATATTCCTGTGCTACCCCTTGTTGGTCCCGAGGGACGGAGGAGGCTAGGTTAGCCGAAAGACGG
TTATCGGTTCAAGGACGCAAGGTGACCCTGCTTTTTCAGGGTAAGAAGGGGTAGAGAAAATGCCT
CGAGCCAATGTTCGAGTACCAGGCGCTACGGCGCTGAAGTAACCC
Right flanking sequence: Indices 82847 -- 83346
ATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAAGGGGGTCGCAGTGACCAGGCCCGG
GCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGTAAGACCATGTATGGGGGCTGACGCCT
GCCCAGTGCCGGAAGGTCAAGGAAGTTGGTGACCTGATGACAGGGGAGCCGGCGACCGAAGCTCC
GGTGAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGA
CCCGCACGAAAGGCGTAACGATCTGGGCACTGTCTCGGAGAGAGGCTCGGTGAAATAGACATGTC
TGTGAAGATGCGGATTCCCTGCACCTGGACAGAAAGACCCTACGAAGCTTCACTGTTCCCTGGGA
TTGGCTTTGGGCCTTTCCTGCGCAGCTTAGGTGGAGGGCGAAGAAGGCCCCCTTCCGGGGGGGCC
CGAGCCATCAGTGAGATACCACTCTGGAAGAGCTAGAATTCTAAC
Found at i:84339 original size:127 final size:127
Alignment explanation
Indices: 84113--84366 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
84103 TATGCAGCTG
84113 AGGCATCCTAACAGACCGGTAGACTTGAACCTTGTTCCTACATGACCCGATCAATTCGATTAGGC
1 AGGCATCCTAACAGACCGGTAGACTTGAACCTTGTTCCTACATGACCCGATCAATTCGATTAGGC
84178 ACTCGCCATCTATTTTCATTGTTCAACTCTTTGACAACATGAAAAAACCAAAAGCTCTGTCC
66 ACTCGCCATCTATTTTCATTGTTCAACTCTTTGACAACATGAAAAAACCAAAAGCTCTGTCC
84240 AGGCATCCTAACAGACCGGTAGACTTGAACCTTGTTCCTACATGACCCGATCAATTCGATTAGGC
1 AGGCATCCTAACAGACCGGTAGACTTGAACCTTGTTCCTACATGACCCGATCAATTCGATTAGGC
84305 ACTCGCCATCTATTTTCATTGTTCAACTCTTTGACAACATGAAAAAACCAAAAGCTCTGTCC
66 ACTCGCCATCTATTTTCATTGTTCAACTCTTTGACAACATGAAAAAACCAAAAGCTCTGTCC
84367 CCTTGGATAG
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.28
Consensus pattern (127 bp):
AGGCATCCTAACAGACCGGTAGACTTGAACCTTGTTCCTACATGACCCGATCAATTCGATTAGGC
ACTCGCCATCTATTTTCATTGTTCAACTCTTTGACAACATGAAAAAACCAAAAGCTCTGTCC
Left flanking sequence: Indices 83613 -- 84112
CCCCAAGAGCTCACATCGACGGGAAGGTTTGGCACCTCGATGTCGGCTCTTCGCCACCTGGGGCT
GTAGTATGTTCCAAGGGTTGGGCTGTTCGCCCATTAAAGCGGTACGTGAGCTGGGTTCAGAACGT
CGTGAGACAGTTCGGTCCATATCCGGTGTGGGCGTTAGAGCATTGAGAGGACCTTTCCCTAGTAC
GAGAGGACCGGGAAGGACGCACCTCTGGTGTACCAGTTATCGTGCCCACGGTAAACGCTGGGTAG
CCAAGTGCGAAGCGGATAACTGCTGAAAGCATCTAAGTAGTAAGCCCACCCCAAGATGAGTGCTC
TCCTATTCCGACTTCCCCAGAGCCTCCGGTAGCACAGCCGAGACAGCGACGGGTTCTCTGCCCCT
GCGGGGATGGAGCGACAGAAGTTTTGAGAATTCAAGAGAAGGTCACGGCGAGACGAGCCGTTTAT
CATTACGATAGGTGTCAAGTGGAAGTGCAGTGATGTATGCAGCTG
Right flanking sequence: Indices 84367 -- 84866
CCTTGGATAGATAGAGAGGGAGGGCAGAGGCCTTTGGTGTCCCCTCCAGTCAAGAATTGGGGCCT
CACAATTACTAGCCAATATAATATGCTTTTCTCTCATGTCTTTCTTCGTTCATGGTTCGATATTC
TGGTGTCCTAGGCGTAGAGGAACCACACCAATCCATCCCGTGGTGGTTAAACTCTACTGCGGTGA
CGATACTGTAGGGGGGGTCCTGCGGAAAAATAGCTCGACGCCAGGATGATAAAAAGCTTAACACC
TCTCATTCTTATTACTTTTTCAATATAAAAAAGAAAAAAAATGAAAAGGTCGTCTTACTCAAAAC
CCCAATTATAATTATTACATCCCTTCTCTCCCACTTCACATCTCGGGGGGCACCGTTCTTATAGA
GAGAAACGCGCTTTCACATCTTCTTAACCCGAAATGGCTGGGGAGAGGAAAGGTTATTTTTTTTT
GAGGGTACTCCCCGGAACAGATCCAGTGGAGACGGGGTGGGGGCC
Found at i:84959 original size:127 final size:127
Alignment explanation
Indices: 84814--85067 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
84804 GAAAGGTTAT
84814 TTTTTTTTGAGGGTACTCCCCGGAACAGATCCAGTGGAGACGGGGTGGGGGCCTGTAGCTCAGAG
1 TTTTTTTTGAGGGTACTCCCCGGAACAGATCCAGTGGAGACGGGGTGGGGGCCTGTAGCTCAGAG
84879 GATTAGAGCACGTGGCTACGAACCACGGTGTCGGGGGTTCGAATCCCTCCTCGCCCACAACC
66 GATTAGAGCACGTGGCTACGAACCACGGTGTCGGGGGTTCGAATCCCTCCTCGCCCACAACC
84941 TTTTTTTTGAGGGTACTCCCCGGAACAGATCCAGTGGAGACGGGGTGGGGGCCTGTAGCTCAGAG
1 TTTTTTTTGAGGGTACTCCCCGGAACAGATCCAGTGGAGACGGGGTGGGGGCCTGTAGCTCAGAG
85006 GATTAGAGCACGTGGCTACGAACCACGGTGTCGGGGGTTCGAATCCCTCCTCGCCCACAACC
66 GATTAGAGCACGTGGCTACGAACCACGGTGTCGGGGGTTCGAATCCCTCCTCGCCCACAACC
85068 GGCCTAAAGG
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.20, C:0.27, G:0.32, T:0.21
Consensus pattern (127 bp):
TTTTTTTTGAGGGTACTCCCCGGAACAGATCCAGTGGAGACGGGGTGGGGGCCTGTAGCTCAGAG
GATTAGAGCACGTGGCTACGAACCACGGTGTCGGGGGTTCGAATCCCTCCTCGCCCACAACC
Left flanking sequence: Indices 84314 -- 84813
CTATTTTCATTGTTCAACTCTTTGACAACATGAAAAAACCAAAAGCTCTGTCCCCTTGGATAGAT
AGAGAGGGAGGGCAGAGGCCTTTGGTGTCCCCTCCAGTCAAGAATTGGGGCCTCACAATTACTAG
CCAATATAATATGCTTTTCTCTCATGTCTTTCTTCGTTCATGGTTCGATATTCTGGTGTCCTAGG
CGTAGAGGAACCACACCAATCCATCCCGTGGTGGTTAAACTCTACTGCGGTGACGATACTGTAGG
GGGGGTCCTGCGGAAAAATAGCTCGACGCCAGGATGATAAAAAGCTTAACACCTCTCATTCTTAT
TACTTTTTCAATATAAAAAAGAAAAAAAATGAAAAGGTCGTCTTACTCAAAACCCCAATTATAAT
TATTACATCCCTTCTCTCCCACTTCACATCTCGGGGGGCACCGTTCTTATAGAGAGAAACGCGCT
TTCACATCTTCTTAACCCGAAATGGCTGGGGAGAGGAAAGGTTAT
Right flanking sequence: Indices 85068 -- 85567
GGCCTAAAGGGGAAGGACCTTTCCCTCTGGGGGTAGGAAAATCATGATCGGGATAGCGGACCCGA
AGCTATGGAACTTGGGTATGGGTCTTTTGTCGAAATGGGAAATGGAATGGCCTTACTTTTTTTCT
TTTTATTTCTTATTTATCTTATTATTGATCTTATCGTGAATGATGGAATCATTATATTCCATATA
GTATGCACGGGCCAATCCGCATATTTTTTTTGTTTTACGCCTCGTAACTCTTCCTCAGCCAGGCT
TGGGCTGAATAGCGGAGCAAGTACAAGTATTAGTATAAAAAATGCGTCCTTCGTCATTAATATGC
TTGCTCGCGGTAATTGCGGCCTCTCGGGAGAATCGATGACTGCATCTTTGATGCACTGCTAGTAC
TAGTACATCGGAGAATTCTTAATTGGCTAGTTGTAAATAGCCCTAGGACTATGGAACAAAGGATT
ATCCCGGACCTACACCGAGGTATTGACGGTGATTCTCAAATATCG
Found at i:85752 original size:127 final size:127
Alignment explanation
Indices: 85526--85779 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
85516 AAGGATTATC
85526 CCGGACCTACACCGAGGTATTGACGGTGATTCTCAAATATCGCAAAACAGAATGTGATACGATGA
1 CCGGACCTACACCGAGGTATTGACGGTGATTCTCAAATATCGCAAAACAGAATGTGATACGATGA
85591 AATAGAATGCAATAGAAACAAAGACAGGGAACGGGTTACCTACTCTTAACGGGCAAAGCGAG
66 AATAGAATGCAATAGAAACAAAGACAGGGAACGGGTTACCTACTCTTAACGGGCAAAGCGAG
85653 CCGGACCTACACCGAGGTATTGACGGTGATTCTCAAATATCGCAAAACAGAATGTGATACGATGA
1 CCGGACCTACACCGAGGTATTGACGGTGATTCTCAAATATCGCAAAACAGAATGTGATACGATGA
85718 AATAGAATGCAATAGAAACAAAGACAGGGAACGGGTTACCTACTCTTAACGGGCAAAGCGAG
66 AATAGAATGCAATAGAAACAAAGACAGGGAACGGGTTACCTACTCTTAACGGGCAAAGCGAG
85780 AGCCTTCAAA
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.38, C:0.20, G:0.24, T:0.18
Consensus pattern (127 bp):
CCGGACCTACACCGAGGTATTGACGGTGATTCTCAAATATCGCAAAACAGAATGTGATACGATGA
AATAGAATGCAATAGAAACAAAGACAGGGAACGGGTTACCTACTCTTAACGGGCAAAGCGAG
Left flanking sequence: Indices 85026 -- 85525
AACCACGGTGTCGGGGGTTCGAATCCCTCCTCGCCCACAACCGGCCTAAAGGGGAAGGACCTTTC
CCTCTGGGGGTAGGAAAATCATGATCGGGATAGCGGACCCGAAGCTATGGAACTTGGGTATGGGT
CTTTTGTCGAAATGGGAAATGGAATGGCCTTACTTTTTTTCTTTTTATTTCTTATTTATCTTATT
ATTGATCTTATCGTGAATGATGGAATCATTATATTCCATATAGTATGCACGGGCCAATCCGCATA
TTTTTTTTGTTTTACGCCTCGTAACTCTTCCTCAGCCAGGCTTGGGCTGAATAGCGGAGCAAGTA
CAAGTATTAGTATAAAAAATGCGTCCTTCGTCATTAATATGCTTGCTCGCGGTAATTGCGGCCTC
TCGGGAGAATCGATGACTGCATCTTTGATGCACTGCTAGTACTAGTACATCGGAGAATTCTTAAT
TGGCTAGTTGTAAATAGCCCTAGGACTATGGAACAAAGGATTATC
Right flanking sequence: Indices 85780 -- 86279
AGCCTTCAAAAAAAAGGAGAATGGCAGTGGCTGCACAATCTCATTCAAGCAAAAGAGTATAAAGT
CAATTGACGGATAGCTATTGTGAATATGTATGATCAGTTTGGAATGGAAGTCTCGATCGTACCTT
CTCTTTAACTGCTGCTCGAGAAGATTTTGACAGATTGCTTTGCATGGAGGAAACTTTCTGGAAAC
AGAAAGAAAGAGTTCAGTGGCTCCAGGAAGGTGATAAGAACACTAAGTTCTTTCACACTGTTGCT
AAAGATAATCATAGAAGACAGATGATCGGGAAAATCAAGCTAGAAGATGGGTCGAAGACTAAGAT
GCAATTGGAGATGCTGGTTGGAAGTTTTTTGAGTCAGTTTTATCTTATGAAACCAACTCCATTGA
TAATAGCATCTTACAAGACATCCCAAGCCTTGTTACTATTGAGGAAAATGAGATGCTAAGTTCAC
CTCCAACGGAAGAAGACATAACATAAAAGATGCTGTTCTCTTGAC
Found at i:89073 original size:19 final size:19
Alignment explanation
Indices: 89049--89086 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
89039 ATCCCCATCG
89049 AATTCAAATCTGTCTTTTC
1 AATTCAAATCTGTCTTTTC
*
89068 AATTCAAATCTTTCTTTTC
1 AATTCAAATCTGTCTTTTC
89087 TCTGGCTAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.26, C:0.21, G:0.03, T:0.50
Consensus pattern (19 bp):
AATTCAAATCTGTCTTTTC
Left flanking sequence: Indices 88549 -- 89048
GGAGTTTCTATATGTCAGATTCATGTTCTGTAACAACCGAACCGACACACTTGGATTCAATAGCA
GCCTAGTCTCAAGCAGCGGATGAAGTAAGACCTTCTTCTATAACACCTTATGGTCAAGAAGTAAC
TTACCTTCGCCGCTCTGTTCTGCTTCTTTTATCATCGAGATTGGCTTGGTCTTCAAGGACTTCGT
ATCTTATCTGCGGGAAAGAGTCCGACTTGCATGTCTTAAGCATAGTGACATCTGCTAATGATAGG
TTAGCCCTCGGGCTAATTAAGAAGTGAAGTGATTGGTCCGAAGAGGGGATTCTAGATCGGCTTGA
TGGAAATAGTATATGCCGTTCTGCTGATGCTAATGGAGGCAAATCGGATTCTCCTCCTTTTGATG
GCATTCAGTTTCATGTCGACGAATCGGCTTCAGTATAGGGATTCTGCTTTCATGGCGGCGAAGCG
CCCTTCCTGCCCTTACCTTTATTCCATCATCATTTATCCCCATCG
Right flanking sequence: Indices 89087 -- 89586
TCTGGCTAGGCTATGATCTTTCTTCTCTACGGAATTCCATCAGACAGACGAGCAACCTGGCACTG
TGTTGAACATCTAGAGCCGGACCGGAATGGCAGCGCATGTCCAGCTCAAGCCCGGATCTCAACAT
CTCCCTCTTTTGTGCTGTGCGAGCACTATGGTTCTTTCCATAGTCAGATATGCGGACGACTCGAC
CTTGGGCTTAATCTCAAGGTCAATGGCGACATGAATTGCTCAGGAACTTTAGGAATGGATCCAGG
GGGAACTAAATCACCTTTAAGTATGAGATCAATGTGACCTCGGTGACCGGGCTGGACTCCGGCAA
AATACGACCGGGACAGCATGAAATCGGAGCTTAACCCGACTATAAGGAGGCCAAGCATTCTTTGC
GTAGGAAGGAAGGAGGCATTATACTTGCTTACCATGCGAAGAAGTGCCTCGACGCGCCGCAGCCA
CTACTTTGACTCCTTTTATGCAATTATGAACTCCACGGAACTTTC
Found at i:105889 original size:14 final size:14
Alignment explanation
Indices: 105854--105890 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
105844 ACAATTCCGT
105854 ATTCGTATTCCTGA
1 ATTCGTATTCCTGA
**
105868 ATGGGTATTCCTGA
1 ATTCGTATTCCTGA
105882 ATTCGTATT
1 ATTCGTATT
105891 ATGTTGGTAC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.22, C:0.16, G:0.19, T:0.43
Consensus pattern (14 bp):
ATTCGTATTCCTGA
Left flanking sequence: Indices 105354 -- 105853
ATGCCTTGAACTCCTCTAGAGAGTCCTCCTTCCAAGGGGCTATGCTCTGTCCTAACCATTCCTTG
CAAAAAGAAAGCCTTTAAAAGCAGTACAGTAAGTAATTGCGGATTTTTTCGCCGGAAAAAGAGTG
AAATACCTTTGACTCCTCCTCCCTAGAGGGGATAGAAGACTGGAAGGGATACCTTTTCCTCGGAT
TATTAGTGGAAAATTTACCAGACAGCTCAACCGTTGACCAGCCAACCGGCAAATACATTTATACA
GAAAGACCAAGCTGGTGTGCCACACCTCCAACTCCAACTACTACAGGAAAGATTCCACCTCCCTC
TCATGAATAAATTTGATGGATCGTACCTTCCTATTTTGGAAGTTGGAACTCCCGCCAACCGGTGA
CTCTGGTTTACCATTATGATTATTTCCCGTTATTTCCTCCTCCCTATTATTTGATTAGTGATTAG
CTACTACTTCAACCTCTAATTAGTATGTTGTTCTTACAATTCCGT
Right flanking sequence: Indices 105891 -- 106390
ATGTTGGTACTTTTTCCAATGCTATTGAGTATTCTGCTTATTCATGTGCATGTGTTATCCCTAAA
TCTCCATCAAACAAAGTAGAAATCCTCAAAAACTGCCCATTCTGAACGTTTTCCTTATGTCGCAG
CAACCAGCTAGCTAGAACTAGAAGAAGAAGAAGGCGAGCTACCAGATGAGCTAACCAGCATACGA
GATATGTTGAATAGAAGGAATGAAACCGACGTACCGTATTGACCGGCGGGTATATTTATTAATGA
AAGAACTAAACCACCGCCCGCAGCTGCTCCTGCTCCTCCAACGCCAACGGCTACTGATTGTGTCA
GCCATTCCTTTATTATTGCTATTGATATAGTGGAATTCATTCCAGTCATTCCCTCCTACACCCTA
TAATTCATGTAATTAATAATTTGACTTCAGGGTGGTAACTCATTTACTTCCAACAATGGGATTTA
CTTCTTCTATTGGAATTGGAACTGAAACTCTTGGTTGCCCCAGCT
Found at i:109594 original size:127 final size:127
Alignment explanation
Indices: 109412--109665 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
109402 ATGATGGATT
109412 GGCGAATTATTGGGCCGAGCTGGATTTGAACCAGCGTAGACATATTGCCAACGAATTTACAGTCC
1 GGCGAATTATTGGGCCGAGCTGGATTTGAACCAGCGTAGACATATTGCCAACGAATTTACAGTCC
109477 GTCCCCATTAACCACTCGAGCATCGACCCGGGAAAAAATAAAATTTAGGCTTATTGATAATC
66 GTCCCCATTAACCACTCGAGCATCGACCCGGGAAAAAATAAAATTTAGGCTTATTGATAATC
109539 GGCGAATTATTGGGCCGAGCTGGATTTGAACCAGCGTAGACATATTGCCAACGAATTTACAGTCC
1 GGCGAATTATTGGGCCGAGCTGGATTTGAACCAGCGTAGACATATTGCCAACGAATTTACAGTCC
109604 GTCCCCATTAACCACTCGAGCATCGACCCGGGAAAAAATAAAATTTAGGCTTATTGATAATC
66 GTCCCCATTAACCACTCGAGCATCGACCCGGGAAAAAATAAAATTTAGGCTTATTGATAATC
109666 CATGATCAAC
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.24
Consensus pattern (127 bp):
GGCGAATTATTGGGCCGAGCTGGATTTGAACCAGCGTAGACATATTGCCAACGAATTTACAGTCC
GTCCCCATTAACCACTCGAGCATCGACCCGGGAAAAAATAAAATTTAGGCTTATTGATAATC
Left flanking sequence: Indices 108912 -- 109411
TCGGGACTGACGGGGCTCGAACCCGCAGCTTCCGCCTTGACAGGGCGGTGCTCTGACCAATTGAA
CTACAATCCCAAAGAAATAAGGCGTACAGCATACATATTCTTATGATTTCATTCAAACCATTTCG
ATTTAGAATCGTCATGTTATATATAAGAGAGACGCGAGTGATATATTGATATCCACATGAATATG
CACTTTAGTGAGAGGGACAGGGATTACTAGTAAAGTAATCCTTTCGTTATTGCCAAATCGATTAA
TAATCAATCTTTCAATGAAAAAAAAATAATTTTATTTCTTTACCCTTAGACTTTATACTTACAGA
TCCCGATATGAATCTAGATCATTCATTAGCAAGATCGGAGTGGGAACAAAATATAATATTATATA
AAATATAAATAAATAGAGGTAGGGATATAGCAGAAAATTGGACTCCTTTTTGATTTCTCTGTATC
AAGCATTTCTGAGGACAAATGGATTATATTATCTCATGATGGATT
Right flanking sequence: Indices 109666 -- 110165
CATGATCAACTTCCTTTCGTAGTACCCTACCCCCAGGGGAAGTCGAATCCCCGCTGCCTCCTTGA
AAGAGAGATGTCCTGAACCACTAGACGATGGGGGCATACTTGCCCGACCGCCATCATACTATACT
CAGAGTATGAACAGTTTTTTGAAATTGTCAATATAATGTAATAGTATGAGCTGCCTCCTTGAAAG
AGAGATGTCCTGAACCACTAGACGATGGGGGCATACTTGCCCGACCGCCATCATACTATACTCAG
AGTATGAACAGTTTTTTGAAATTGTCAATATAATGTAATAGTATGACTAGGTCCGAAGAATCTTT
CATGATTCCATAGAATTTTATGATTCGTCATTCATGAATCATTCATTCTAATCGTCATTTTATAC
ATTCCATTTTAGTTATATATAATATATCAATCTATATATTATATATAACTAAATAATAATAATAA
TACGAAGGATCCTTTCGGGGAGTGATTTGTCCGCCAAAACAAAAA
Found at i:109944 original size:127 final size:127
Alignment explanation
Indices: 109718--109971 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
109708 TCGAATCCCC
109718 GCTGCCTCCTTGAAAGAGAGATGTCCTGAACCACTAGACGATGGGGGCATACTTGCCCGACCGCC
1 GCTGCCTCCTTGAAAGAGAGATGTCCTGAACCACTAGACGATGGGGGCATACTTGCCCGACCGCC
109783 ATCATACTATACTCAGAGTATGAACAGTTTTTTGAAATTGTCAATATAATGTAATAGTATGA
66 ATCATACTATACTCAGAGTATGAACAGTTTTTTGAAATTGTCAATATAATGTAATAGTATGA
109845 GCTGCCTCCTTGAAAGAGAGATGTCCTGAACCACTAGACGATGGGGGCATACTTGCCCGACCGCC
1 GCTGCCTCCTTGAAAGAGAGATGTCCTGAACCACTAGACGATGGGGGCATACTTGCCCGACCGCC
109910 ATCATACTATACTCAGAGTATGAACAGTTTTTTGAAATTGTCAATATAATGTAATAGTATGA
66 ATCATACTATACTCAGAGTATGAACAGTTTTTTGAAATTGTCAATATAATGTAATAGTATGA
109972 CTAGGTCCGA
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (127 bp):
GCTGCCTCCTTGAAAGAGAGATGTCCTGAACCACTAGACGATGGGGGCATACTTGCCCGACCGCC
ATCATACTATACTCAGAGTATGAACAGTTTTTTGAAATTGTCAATATAATGTAATAGTATGA
Left flanking sequence: Indices 109218 -- 109717
TAGACTTTATACTTACAGATCCCGATATGAATCTAGATCATTCATTAGCAAGATCGGAGTGGGAA
CAAAATATAATATTATATAAAATATAAATAAATAGAGGTAGGGATATAGCAGAAAATTGGACTCC
TTTTTGATTTCTCTGTATCAAGCATTTCTGAGGACAAATGGATTATATTATCTCATGATGGATTG
GCGAATTATTGGGCCGAGCTGGATTTGAACCAGCGTAGACATATTGCCAACGAATTTACAGTCCG
TCCCCATTAACCACTCGAGCATCGACCCGGGAAAAAATAAAATTTAGGCTTATTGATAATCGGCG
AATTATTGGGCCGAGCTGGATTTGAACCAGCGTAGACATATTGCCAACGAATTTACAGTCCGTCC
CCATTAACCACTCGAGCATCGACCCGGGAAAAAATAAAATTTAGGCTTATTGATAATCCATGATC
AACTTCCTTTCGTAGTACCCTACCCCCAGGGGAAGTCGAATCCCC
Right flanking sequence: Indices 109972 -- 110471
CTAGGTCCGAAGAATCTTTCATGATTCCATAGAATTTTATGATTCGTCATTCATGAATCATTCAT
TCTAATCGTCATTTTATACATTCCATTTTAGTTATATATAATATATCAATCTATATATTATATAT
AACTAAATAATAATAATAATACGAAGGATCCTTTCGGGGAGTGATTTGTCCGCCAAAACAAAAAC
AAAAAATACCAAAAATCTCACACTCCTTAATCCGAACGCACTAAAACCCAAAAAAATATTCTCCT
GATCGACTTCATCTTCACTTCATGCTTACTTGCTGGGCTGGGGCCCTCAACTTCTTTCTAAAGAG
GACTTGCCTACATATAACAGCTTAACTGAGCCAGAATCAAGCCCAATGTAGTTCTTTTAGAAACC
TTCAATCTTTATGAAGAATAAAATCGACAAATTGAATAGGGAATCACATAAGATCAGCAGGACCA
ATGGATAGGGCGTCTCAAACAAGCATTAAATTTCCTCTATTCTAT
Found at i:122787 original size:14 final size:14
Alignment explanation
Indices: 122768--122795 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
122758 TTCTTACTTG
122768 ACTCTATGAATAGT
1 ACTCTATGAATAGT
122782 ACTCTATGAATAGT
1 ACTCTATGAATAGT
122796 GACCTTATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (14 bp):
ACTCTATGAATAGT
Left flanking sequence: Indices 122268 -- 122767
GGTGGAATAATAAAGATAGGAAAGAATGTTCCCTACCTAACCGTATACTAATATAGGGTGGAGGA
CGGCATAGAGAAGACTAACACTAGCCGAACAACCAGTAGAGCGGGGATAACGTAATAAACCGATA
GTGAGAGCTAGCTGAGCAATAGCACAAAAAAGAGGTCACGTTCGAACGGTAAGCTACAACTAATA
AATATGTATATAATAGAAAAGAATCTTTTTATTTAAATATTCGTAGTTCTCTACCTTATAGTAGT
ATTGCTCCATGTTAAAGAGGACGTAAAGCTAGCAAAGGGGAGAATACCTCTTCTATTGACTAGTT
GTCTGGTTAGCCAGCCGGTAAGAAATCCCACCACGGGATTCCCTCTCTTACTTGGCTAATAGTTG
GCAATACCCTTACCAAGTTACAAAAAGGGTGGCTTTCGGCTTTCTGACTACTGGTACTACTGGCT
GGCAGACTACTGTAACTAAAGACCTTTCTTTTCCTTTCTTACTTG
Right flanking sequence: Indices 122796 -- 123295
GACCTTATTCCTCCTCTTTTCTGTCTTACTAGTCGCTATCCTTGCTTCGAACAACCAAAATAGGG
CGGACTAGCGCAGCTATATGCCTTAAGCGAGGAGACTCGCTTGTTTCTGGTAGGCTTTCAGGTGC
AAGCAACGGCTTTTCAGCAGCAAGAGGAGTCTAACAAGTCGCGCTAACAGTCCAGCCCACGGGGA
AGAACAACAAACAACTCTAACAAGTCGCGCTAACAGCCCAGCCCCCTGGGGGAATACCTACTATT
GCAAATGCTTACCGCCCCTATTCTCTCAATAAAGCCTCTCCTTTATAGATGAGGGGAAGTCCCTT
CGCTACCCTTCCAAAGAAATGGCTTGATTTGCCAAAGGGATGAAACCAAGGTCACACCATTAGGG
TCAACAAGAAGAGGAATTCTATCACGAAAGAGCTACTCGCTTCATGCCCCCCTCTTTTTCCTCCC
TCTGTGTCTAATTTCTTCTCTTCGACCTGAAGTTAAGTTCTTTAT
Found at i:132498 original size:127 final size:127
Alignment explanation
Indices: 132272--132526 Score: 510
Period size: 127 Copynumber: 2.0 Consensus size: 127
132262 TCAAATTGAA
132272 AATACGATATATAAGGACCGCTACTACAAAGAGTACTACACCCTTGATCGTGAAATATCGATTGC
1 AATACGATATATAAGGACCGCTACTACAAAGAGTACTACACCCTTGATCGTGAAATATCGATTGC
132337 TTGTTGAACCCTGTGAATTGCGTGAAAGTAGGATACTCCAAATTCGGGGGTCAAAGAGTTTT
66 TTGTTGAACCCTGTGAATTGCGTGAAAGTAGGATACTCCAAATTCGGGGGTCAAAGAGTTTT
132399 AATACGATATATAAGGACCGCTACTACAAAGAGTACTACACCCTTGATCGTGAAATATCGATTGC
1 AATACGATATATAAGGACCGCTACTACAAAGAGTACTACACCCTTGATCGTGAAATATCGATTGC
132464 TTGTTGAACCCTGTGAATTGCGTGAAAGTAGGATACTCCAAATTCGGGGGTCAAAGAGTTTT
66 TTGTTGAACCCTGTGAATTGCGTGAAAGTAGGATACTCCAAATTCGGGGGTCAAAGAGTTTT
132526 A
1 A
132527 TAAAACGTTC
Statistics
Matches: 128, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 128 1.00
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (127 bp):
AATACGATATATAAGGACCGCTACTACAAAGAGTACTACACCCTTGATCGTGAAATATCGATTGC
TTGTTGAACCCTGTGAATTGCGTGAAAGTAGGATACTCCAAATTCGGGGGTCAAAGAGTTTT
Left flanking sequence: Indices 131772 -- 132271
ACCCCCAAGATGCAAGGTAGACTTGCAGTAAAGCTTCATGTCTAAAGAAGGGGAGGGGCCAGCCA
AAGAACCAGAAGGCGTGTTGTGAATAGATTAATTTATTTTCTTACTTAGTTAATAGGAATTGAAA
CTGGTATTTGCGGAAGCGCTGTCCACCACGATTCTATTCTGATTCAAACCTTTCTAGTTAAGGAA
TGGATAATTTAGCACCGGATGCAGATGGAATGGAACAGATCGGCAACCGCATTAAAAACCCTTCC
AGCATGCAACCCGGCACAGTAGGAAGGTTGTAGCAGCACAACTTAAAAACGTAGTAATCGTGCGG
GTTAACGCGCCAATCAATAGAAGGCGTTAGCGCGCTATAGCTTGAAGCTGGCTCGCCCCCTATTA
ATTTAATAGATCCGGCGTTCTTCGACTGCACTATACTATGCCCGAACAGGGATATAGGAAGAAGC
CAATAGCCTACAGAGATTTTTTCTTTCGACCATATTCAAATTGAA
Right flanking sequence: Indices 132527 -- 133026
TAAAACGTTCTTGGTGGAAAAAAATGTGAATGAAAGATCCCACTGAATTGAATTGGGTCCATGAA
TCTAAGAAATAGTGAGAATTCTGAAAGTAGGATACTCCAAATTCGGGGGTCAAAGAGTTTTATAA
AACGTTCTTGGTGGAAAAAAATGTGAATGAAAGATCCCACTGAATTGAATTGGGTCCATGAATCT
AAGAAATAGTGAGAATTCTGGATCTCTCTCAATTCGAAAATCCAGGATTTGAATTGATGTCCTTT
CATTGATTCCTCCTAAATTGCCCTAAAGATTTCATTTCAATTGGAATTTGGTTATTCACCATGTA
CGAGGATCCCCGCTAAGCATCCATGGCTGAATGGTGAAAGCGCCCAACTCATAATTGGCGAATTC
GTAGGTTCAATTCCTACTGGATGCACGCCAATCGGACCCTCCAATCCAATAAGTCTATTGGAATT
GGCTCTGTATCAATGGAATCTCATCATCCATACATAACGAATTGG
Found at i:132617 original size:127 final size:127
Alignment explanation
Indices: 132486--132741 Score: 512
Period size: 127 Copynumber: 2.0 Consensus size: 127
132476 GTGAATTGCG
132486 TGAAAGTAGGATACTCCAAATTCGGGGGTCAAAGAGTTTTATAAAACGTTCTTGGTGGAAAAAAA
1 TGAAAGTAGGATACTCCAAATTCGGGGGTCAAAGAGTTTTATAAAACGTTCTTGGTGGAAAAAAA
132551 TGTGAATGAAAGATCCCACTGAATTGAATTGGGTCCATGAATCTAAGAAATAGTGAGAATTC
66 TGTGAATGAAAGATCCCACTGAATTGAATTGGGTCCATGAATCTAAGAAATAGTGAGAATTC
132613 TGAAAGTAGGATACTCCAAATTCGGGGGTCAAAGAGTTTTATAAAACGTTCTTGGTGGAAAAAAA
1 TGAAAGTAGGATACTCCAAATTCGGGGGTCAAAGAGTTTTATAAAACGTTCTTGGTGGAAAAAAA
132678 TGTGAATGAAAGATCCCACTGAATTGAATTGGGTCCATGAATCTAAGAAATAGTGAGAATTC
66 TGTGAATGAAAGATCCCACTGAATTGAATTGGGTCCATGAATCTAAGAAATAGTGAGAATTC
132740 TG
1 TG
132742 GATCTCTCTC
Statistics
Matches: 129, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 129 1.00
ACGTcount: A:0.38, C:0.12, G:0.24, T:0.27
Consensus pattern (127 bp):
TGAAAGTAGGATACTCCAAATTCGGGGGTCAAAGAGTTTTATAAAACGTTCTTGGTGGAAAAAAA
TGTGAATGAAAGATCCCACTGAATTGAATTGGGTCCATGAATCTAAGAAATAGTGAGAATTC
Left flanking sequence: Indices 131986 -- 132485
TGCAGATGGAATGGAACAGATCGGCAACCGCATTAAAAACCCTTCCAGCATGCAACCCGGCACAG
TAGGAAGGTTGTAGCAGCACAACTTAAAAACGTAGTAATCGTGCGGGTTAACGCGCCAATCAATA
GAAGGCGTTAGCGCGCTATAGCTTGAAGCTGGCTCGCCCCCTATTAATTTAATAGATCCGGCGTT
CTTCGACTGCACTATACTATGCCCGAACAGGGATATAGGAAGAAGCCAATAGCCTACAGAGATTT
TTTCTTTCGACCATATTCAAATTGAAAATACGATATATAAGGACCGCTACTACAAAGAGTACTAC
ACCCTTGATCGTGAAATATCGATTGCTTGTTGAACCCTGTGAATTGCGTGAAAGTAGGATACTCC
AAATTCGGGGGTCAAAGAGTTTTAATACGATATATAAGGACCGCTACTACAAAGAGTACTACACC
CTTGATCGTGAAATATCGATTGCTTGTTGAACCCTGTGAATTGCG
Right flanking sequence: Indices 132742 -- 133241
GATCTCTCTCAATTCGAAAATCCAGGATTTGAATTGATGTCCTTTCATTGATTCCTCCTAAATTG
CCCTAAAGATTTCATTTCAATTGGAATTTGGTTATTCACCATGTACGAGGATCCCCGCTAAGCAT
CCATGGCTGAATGGTGAAAGCGCCCAACTCATAATTGGCGAATTCGTAGGTTCAATTCCTACTGG
ATGCACGCCAATCGGACCCTCCAATCCAATAAGTCTATTGGAATTGGCTCTGTATCAATGGAATC
TCATCATCCATACATAACGAATTGGTGTGGTATATTCATATCATAACATATGAACAGTAAGAACT
AGCATTCTTATTGAGACTCGAACTCATAAGGAAGAAAATGGATGGAATCAAATATGCAGTATTTA
CAGACAAAAGTATTCGGTTATTGGGGAAAAATCAATATACTTATAATGTGGAATCAGGATCAACT
AGGACAGAAATAAAGCATTGGGTCGAACTTGGTGTCAAGGTAATA
Found at i:133604 original size:127 final size:127
Alignment explanation
Indices: 133378--133631 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
133368 AAAAGAACTA
133378 AAATCAAAATACTTAATAGCATGGCGATACATTTATACAAAACTTCTACTTCGAGCACACGCAAT
1 AAATCAAAATACTTAATAGCATGGCGATACATTTATACAAAACTTCTACTTCGAGCACACGCAAT
133443 GGAGCCGTAGACAGTCAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGACAGCACCG
66 GGAGCCGTAGACAGTCAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGACAGCACCG
133505 AAATCAAAATACTTAATAGCATGGCGATACATTTATACAAAACTTCTACTTCGAGCACACGCAAT
1 AAATCAAAATACTTAATAGCATGGCGATACATTTATACAAAACTTCTACTTCGAGCACACGCAAT
133570 GGAGCCGTAGACAGTCAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGACAGCACCG
66 GGAGCCGTAGACAGTCAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGACAGCACCG
133632 TTGTGGTAAA
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.39, C:0.22, G:0.17, T:0.23
Consensus pattern (127 bp):
AAATCAAAATACTTAATAGCATGGCGATACATTTATACAAAACTTCTACTTCGAGCACACGCAAT
GGAGCCGTAGACAGTCAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGACAGCACCG
Left flanking sequence: Indices 132878 -- 133377
CTGAATGGTGAAAGCGCCCAACTCATAATTGGCGAATTCGTAGGTTCAATTCCTACTGGATGCAC
GCCAATCGGACCCTCCAATCCAATAAGTCTATTGGAATTGGCTCTGTATCAATGGAATCTCATCA
TCCATACATAACGAATTGGTGTGGTATATTCATATCATAACATATGAACAGTAAGAACTAGCATT
CTTATTGAGACTCGAACTCATAAGGAAGAAAATGGATGGAATCAAATATGCAGTATTTACAGACA
AAAGTATTCGGTTATTGGGGAAAAATCAATATACTTATAATGTGGAATCAGGATCAACTAGGACA
GAAATAAAGCATTGGGTCGAACTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCGGG
AAAGGGTAGAAGAATGGGGCTTTTTATGGGACATACAATGCATTACAGACGTATGATCATTACGC
TTCAACCAGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTA
Right flanking sequence: Indices 133632 -- 134131
TTGTGGTAAAGGTCGTAATGCCAGAGGCATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAAC
GTCTATACCGTAAAATCGATTTTCGACGGAATGAAAAAGACGTATATGGTAGAATCGTAACCATA
GAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAGAGATA
TATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAA
AAATGGGAAATGCCCTACCTTTGAGTGCGGTTTGAACTATTGATTTACGTAATTGGAAGTAACCA
ATTAGGTTTACGACGAAACCTAGAAATCGATCACTGATCCAATTTGAGTACCTCTACAGGATAGA
CCTCAACAGAAAACTGAAGAGTAACGGCAGCAAGTGATTGAGTTCAGTAGTTCCTCATATAAAAT
TATTGACTCTAGAGATATAGTAATATGGAGAAGACAAAATTGTTT
Found at i:134794 original size:127 final size:127
Alignment explanation
Indices: 134568--134823 Score: 512
Period size: 127 Copynumber: 2.0 Consensus size: 127
134558 TTGATCAAAA
134568 AGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTG
1 AGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTG
134633 GAAAGGGTGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGG
66 GAAAGGGTGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGG
134695 AGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTG
1 AGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTG
134760 GAAAGGGTGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGG
66 GAAAGGGTGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGG
134822 AG
1 AG
134824 CCACATTAAA
Statistics
Matches: 129, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 129 1.00
ACGTcount: A:0.36, C:0.20, G:0.26, T:0.19
Consensus pattern (127 bp):
AGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTG
GAAAGGGTGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGG
Left flanking sequence: Indices 134068 -- 134567
GTAGTTCCTCATATAAAATTATTGACTCTAGAGATATAGTAATATGGAGAAGACAAAATTGTTTC
AAGCACCGACAGAACCGGAAGCGCCCCTTGTTTCAAAGAGAGGAGGACGGGTTATTCACATTTCA
TTTGATGGTCAGAGGCGAATTGAAAGCTAAGCAGTGGGAATTCTAAAGATTCCCCGGGGGAAAAA
TAGAGATGTCTCCTATGTTACCCATAATATGTGGAAGTATCGACGTAATTTCATAGAGTCATTCG
GTCTGAATGCTACATGAAGAACATAAGCCAGATGACGGAACGGGAAGACCTAGGATGTAGAAGAT
CATAACATGAGTGATTCGGCAGATTTGGATTCCTATATATCCACTCATGTGGTACTTCATTCTAC
GTACGATATATATAAGATCCATCTGTATAGATATCATCATCTACATCCAGAAAGCCGTATGCTTT
GGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTGATCAAAA
Right flanking sequence: Indices 134824 -- 135323
CCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTCGGA
CAAGTGGGGAATGTTGGGGTGAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAGTGTTGGCTAGG
TAAGCGTCCTGTAGTAAGAGGAATAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAG
GGAGGGCCCCAATTGGTAGAAAAAAACCAACAACCCCTTGGTTGGGGTTATCCTGCACTTGGAAG
AAGAAGTAGAAAAGGGAATAAATATAGTGATAATTTTATTCTTCGTCGCCGTGGAGAGAAATTAT
AATTTTTTCTTCGTCTTTACAAAAGAAAAAAAAGAAATCTGTAGCGAATCATTAAAAAAAAAAAA
TGGATTGATAAGCTTAAAGTTATGGGCGAACGACGGGAATTGAACCCGCGCATGGTGAATTCACA
ATCCACTGCCTTGATCCACTTGGCTACATCCGCCCCTACCCCCGC
Found at i:143303 original size:127 final size:127
Alignment explanation
Indices: 143077--143458 Score: 587
Period size: 127 Copynumber: 3.0 Consensus size: 127
143067 AGAGCAAGAA
143077 CAAGAGAAGAGGACCGGTCGCTTGTATCTTCGGGATACGAGTTGGCGGTCTTCTTTAAGAACTCT
1 CAAGAGAAGAGGACCGGTCGCTTGTATCTTCGGGATACGAGTTGGCGGTCTTCTTTAAGAACTCT
143142 TGACTCTAATACTCATTATGGATCAACTCGTTGCGGATTTCATTTCTAGGATGGGTTTGGCT
66 TGACTCTAATACTCATTATGGATCAACTCGTTGCGGATTTCATTTCTAGGATGGGTTTGGCT
143204 CAAGAGAAGAGGACCGGTCGCTTGTATCTTCGGGATACGAGTTGGCGGTCTTCTTTAAGAACTCT
1 CAAGAGAAGAGGACCGGTCGCTTGTATCTTCGGGATACGAGTTGGCGGTCTTCTTTAAGAACTCT
143269 TGACTCTAATACTCATTATGGATCAACTCGTTGCGGATTTCATTTCTAGGATGGGTTTGGCT
66 TGACTCTAATACTCATTATGGATCAACTCGTTGCGGATTTCATTTCTAGGATGGGTTTGGCT
* *** ** * * *
143331 C-TG-CCTGTA-G--CTAT-TCTTGTAGCCGTTAGGGCTGATACGAGTTGGCGGTCTTCTTTAAG
1 CAAGAGAAG-AGGACCGGTCGCTTGTA-TC-TT-CGG--GATACGAGTTGGCGGTCTTCTTTAAG
143390 AACTCTTGACTCTAATACTCATTATGGATCAACTCGTTGCGGATTTCATTTCTAGGATGGGTTTG
60 AACTCTTGACTCTAATACTCATTATGGATCAACTCGTTGCGGATTTCATTTCTAGGATGGGTTTG
143455 GCT
125 GCT
143458 C
1 C
143459 TGCCTGTAGC
Statistics
Matches: 240, Mismatches: 9, Indels: 12
0.92 0.03 0.05
Matches are distributed among these distances:
122 6 0.03
123 3 0.01
124 2 0.01
125 4 0.02
126 2 0.01
127 223 0.93
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.34
Consensus pattern (127 bp):
CAAGAGAAGAGGACCGGTCGCTTGTATCTTCGGGATACGAGTTGGCGGTCTTCTTTAAGAACTCT
TGACTCTAATACTCATTATGGATCAACTCGTTGCGGATTTCATTTCTAGGATGGGTTTGGCT
Left flanking sequence: Indices 142577 -- 143076
CTGAGGTGAATCTGGATCGGTCTTTCGTTGTTTGCTCTGTGGCAAAAGGTCAAGGCTCATCCGCT
CATCGGGAATCGAATGACTTTCTTTCTTTATTTATCTCCTTGCTTTCCCTTCCTAGCCCTATTAA
TTTAATCAAAAATGAGTAGGCCGGGGGAGGACCCCCCCAAGCCCCTTAGTTCCATCTCCGTCTCT
CAAAAGAACAACCTATTTTCCTAAAATGCATCCGCTTATCCGCTGCTTAGAGAGACTCAGAGAGG
AGCACTTCATTAATAAGCGTATAGTGCATTCAATAAGTTAGAGTCCTTAAGAAAGTCCCAGTACA
TTAAGGAAGTAAAGATGAGTCCTAACCCTAAAGGCAGGAAAGCCAATAAAGTGAAATTTAAATCG
AAATAGCGTATGAAATGAAATCCCAAACAATGCCCAACAAGTCCCATGTCTTTCTCGGTTGGACC
AACCCAACCGGTGATTTCCGTCTTTATGAATTAGTAGAGCAAGAA
Right flanking sequence: Indices 143459 -- 143958
TGCCTGTAGCTATTCTTGTAGCCGTTAGGGCTAGCCGAATGATCCATCAAATAGTCTGAATATGG
AGACAGAGGTAACTGATTTAGCAATAGATGTTGTTAAGGAAAAGATAGTGAACCAACTAAAAATT
CTGTTTAGAGTATATCGCGATACTACTTTAGATGTGAACTTACCAACAGGAGTCAATCTCCAAGA
GGTAAGCGAACGTTTCTTTGATATTGAGGTAAGCTTACGTCCCCTTTTTCGAGAAGAAAGAGTAA
GCTCTCTAAACAATATTTATTTAGATCTTATTTCTCAGGGAACGCAAAGTGAGTACTTTCTCCAA
GTTATACAATTTCTTGGAGGGTAGTCTTTCTTTTACTGACACAGCAGGCTGGGGGATTTGGTAAG
GCCATTGACCCCCCTTTTCCTAGGGGGTATAAAATACCTGAATTGACCTTGTTCTCGGAAGAAGG
AAGTGTCTCAGCCTTAGAACACATGGCTCGATTTACTTTCCAGTG
Found at i:155641 original size:127 final size:127
Alignment explanation
Indices: 155415--155669 Score: 510
Period size: 127 Copynumber: 2.0 Consensus size: 127
155405 GTCGTCTACT
155415 TTCAGGAAATGTTCGGAACAGAGAACTAACAATAATACAACGCCGCATTCTCCGAAGATTGAGGA
1 TTCAGGAAATGTTCGGAACAGAGAACTAACAATAATACAACGCCGCATTCTCCGAAGATTGAGGA
155480 ACAAGACGAGATCTATTAAGAGAAAGATTTATCCGAGAAAAAATCTTAACAGTTACATCCAA
66 ACAAGACGAGATCTATTAAGAGAAAGATTTATCCGAGAAAAAATCTTAACAGTTACATCCAA
155542 TTCAGGAAATGTTCGGAACAGAGAACTAACAATAATACAACGCCGCATTCTCCGAAGATTGAGGA
1 TTCAGGAAATGTTCGGAACAGAGAACTAACAATAATACAACGCCGCATTCTCCGAAGATTGAGGA
155607 ACAAGACGAGATCTATTAAGAGAAAGATTTATCCGAGAAAAAATCTTAACAGTTACATCCAA
66 ACAAGACGAGATCTATTAAGAGAAAGATTTATCCGAGAAAAAATCTTAACAGTTACATCCAA
155669 T
1 T
155670 CAACAAAACC
Statistics
Matches: 128, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 128 1.00
ACGTcount: A:0.42, C:0.18, G:0.18, T:0.22
Consensus pattern (127 bp):
TTCAGGAAATGTTCGGAACAGAGAACTAACAATAATACAACGCCGCATTCTCCGAAGATTGAGGA
ACAAGACGAGATCTATTAAGAGAAAGATTTATCCGAGAAAAAATCTTAACAGTTACATCCAA
Left flanking sequence: Indices 154915 -- 155414
TCTTAAGTAAAGTTCAGTTTACTTTTTCGATTCGGAACTCTTAGTCGAGCTGATGGCGAGATCGA
TTTTTTGTTCGAGGTTAAAGAGGAAAGAGAGGAACCACCGCCCTATGGTGCTTTTACGAAAGTAC
GATCACCGGTGGCTAATACCTTCTCGACACTATCGAACCGTCAATCCACTCTCAATAGATGCTGC
CCCTTAAACAGTGTGAAAGGGTGGTAGGTAGAACTAAGGGCGTCAGGTCTTGTTTGGCCCGGTAA
TGGAATCAATAGCTTGCCCGAACAGGGATATAGGAAGAAGCTTTGTTTTCGCGGAGAATCTACGC
TCTGTAAACAAGGGTCGACCTTAAAGGGTAATTATCGATAGACGAGTGGGCGAGACGGAAATGGG
GTCGCGGCTAGAAGTTTTGGGTTCGACTCCCATAGCCCCGATGTGGCGAAAAAGACTGATTCAAC
GAGATAAGAAATGCCTGCATTAAGATTTAAAACTTGTCGTCTACT
Right flanking sequence: Indices 155670 -- 156169
CAACAAAACCAAATTCATCTATTTTTTTCATCCATGGATGAATGGTGAAAGCGTCCCAACTCATA
ATTGGCGAATTCGTAGGTTCGATTCCTGCTGGATGAACGATGGCGGAGTTTTTCCGAGTACAGTC
TCACTTCGGTATAAAAGCCATCTCTTCGGTTCGGTCACTACCTCTAGCTCTAGAACAGTTGTTGA
ATAGTTAATATAATCTTGAACTCATTTACGAGGAGTGCGATAAAGAGCAAGCGAAAACCTACCTG
CCTGCCTTAATAATAGAATAACGGAAAGAATCAAACTCAAAGGAATTCAAGTAAAGCCGCTCACC
CCTGATCAAGCCAGTCAGTAATGAAGCCAATCTCTCCATTAAATCAATCTCCGTGGCGAACTCCC
GCCCAATCAGTAAAGGAGTAGAAGCCTCTCCTTTCGCTTATTGAGTAGGGCTTGACTCTGCGGCG
ATAGAAAAAGCCAAAGAGGAAGAAGGGTAGAGAGGAAAAGACAAA
Found at i:166182 original size:127 final size:127
Alignment explanation
Indices: 165919--166172 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
165909 AAGAAATCGC
165919 AGAATTTCTTGGGAATCCTACAAGATCCATTCGTTCTTTTTTCTCTGACAGATGGTCAGAACTTC
1 AGAATTTCTTGGGAATCCTACAAGATCCATTCGTTCTTTTTTCTCTGACAGATGGTCAGAACTTC
165984 ATCTGGGTTCGAATCCTACTGAGAGGTCCACTAGAGATCAGAAATTGTTGAAGAAACAACAA
66 ATCTGGGTTCGAATCCTACTGAGAGGTCCACTAGAGATCAGAAATTGTTGAAGAAACAACAA
166046 AGAATTTCTTGGGAATCCTACAAGATCCATTCGTTCTTTTTTCTCTGACAGATGGTCAGAACTTC
1 AGAATTTCTTGGGAATCCTACAAGATCCATTCGTTCTTTTTTCTCTGACAGATGGTCAGAACTTC
166111 ATCTGGGTTCGAATCCTACTGAGAGGTCCACTAGAGATCAGAAATTGTTGAAGAAACAACAA
66 ATCTGGGTTCGAATCCTACTGAGAGGTCCACTAGAGATCAGAAATTGTTGAAGAAACAACAA
166173 GATGTTTCTT
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.30
Consensus pattern (127 bp):
AGAATTTCTTGGGAATCCTACAAGATCCATTCGTTCTTTTTTCTCTGACAGATGGTCAGAACTTC
ATCTGGGTTCGAATCCTACTGAGAGGTCCACTAGAGATCAGAAATTGTTGAAGAAACAACAA
Left flanking sequence: Indices 165419 -- 165918
CGCTCCGCTCACACATTTCGACCAGGCACAGCAGACGATCCCGGAACACTCACTATAAAGCCCAA
TAGCCGATCAGAATCGGATTTTTTGAGGAACGTCTCGAGAGAGAATTGGATTTGGTTAGACAATG
TGTGGTTGGTAAACAAGGATCGGTTTTTTAGCAAGGTACGGAATGTATCGTCAAATATTCAATAT
GATTCCACAAGATCTAGTTTCGTTCAAGTAACGGATTCTAGCCAATTGAAAGGATCTTCTGATCA
ATCCAGAGATCATTTGGATTCCATTAGTAATGATAATTCGGAATATCACACATTGATCAATCAAA
GAGAGATTCCACAACTAAAAGAAAGTCTTTGGGATCCTTCCTTTCTTCAAACGGAACGAACAGAG
ATAGAATCAGACCGATTCCCGAAATGCCTTTCTGGATATTCCTCAATGTCCCGGCTATTCACGGA
ACGTGAGAAGCAGATTCTTATTCATCTGCTTCCGGAAGAAATCGC
Right flanking sequence: Indices 166173 -- 166672
GATGTTTCTTTTGTCCCTTCCAGGCGATCGGAAAATAAAGAAATGGTTAATATATTCAAGATAAT
TACGTATTTACAAAATACCGTCTCAATTCATCCTATTTCATCAGATCCGGAAGAAACAACAAGAT
GTTTCTTTTGTCCCTTCCAGGCGATCGGAAAATAAAGAAATGGTTAATATATTCAAGATAATTAC
GTATTTACAAAATACCGTCTCAATTCATCCTATTTCATCAGATCCGGGATGTGATATGGTTCCGA
AGGATGAACCGGATATGGACAGTTCCAATAAGATTTCATTCTTGAACAAAAATCCATTTTTGGAT
TTATTTCATCTATTCCATGACCGGAACAGGGGGGGATACACGTTACACCACGATTTTGAATCAGA
AGAGAGATTTCAAGAAATGGCAGATCTATTCACTCTATCAATAACGGAGCCGGATCTGGGATTTA
TTTCATCTATTCCATGACCGGAACAGGGGGGGATACACGTTACAC
Found at i:166291 original size:127 final size:127
Alignment explanation
Indices: 166160--166414 Score: 510
Period size: 127 Copynumber: 2.0 Consensus size: 127
166150 AGAAATTGTT
166160 GAAGAAACAACAAGATGTTTCTTTTGTCCCTTCCAGGCGATCGGAAAATAAAGAAATGGTTAATA
1 GAAGAAACAACAAGATGTTTCTTTTGTCCCTTCCAGGCGATCGGAAAATAAAGAAATGGTTAATA
166225 TATTCAAGATAATTACGTATTTACAAAATACCGTCTCAATTCATCCTATTTCATCAGATCCG
66 TATTCAAGATAATTACGTATTTACAAAATACCGTCTCAATTCATCCTATTTCATCAGATCCG
166287 GAAGAAACAACAAGATGTTTCTTTTGTCCCTTCCAGGCGATCGGAAAATAAAGAAATGGTTAATA
1 GAAGAAACAACAAGATGTTTCTTTTGTCCCTTCCAGGCGATCGGAAAATAAAGAAATGGTTAATA
166352 TATTCAAGATAATTACGTATTTACAAAATACCGTCTCAATTCATCCTATTTCATCAGATCCG
66 TATTCAAGATAATTACGTATTTACAAAATACCGTCTCAATTCATCCTATTTCATCAGATCCG
166414 G
1 G
166415 GATGTGATAT
Statistics
Matches: 128, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 128 1.00
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.31
Consensus pattern (127 bp):
GAAGAAACAACAAGATGTTTCTTTTGTCCCTTCCAGGCGATCGGAAAATAAAGAAATGGTTAATA
TATTCAAGATAATTACGTATTTACAAAATACCGTCTCAATTCATCCTATTTCATCAGATCCG
Left flanking sequence: Indices 165660 -- 166159
TGAAAGGATCTTCTGATCAATCCAGAGATCATTTGGATTCCATTAGTAATGATAATTCGGAATAT
CACACATTGATCAATCAAAGAGAGATTCCACAACTAAAAGAAAGTCTTTGGGATCCTTCCTTTCT
TCAAACGGAACGAACAGAGATAGAATCAGACCGATTCCCGAAATGCCTTTCTGGATATTCCTCAA
TGTCCCGGCTATTCACGGAACGTGAGAAGCAGATTCTTATTCATCTGCTTCCGGAAGAAATCGCA
GAATTTCTTGGGAATCCTACAAGATCCATTCGTTCTTTTTTCTCTGACAGATGGTCAGAACTTCA
TCTGGGTTCGAATCCTACTGAGAGGTCCACTAGAGATCAGAAATTGTTGAAGAAACAACAAAGAA
TTTCTTGGGAATCCTACAAGATCCATTCGTTCTTTTTTCTCTGACAGATGGTCAGAACTTCATCT
GGGTTCGAATCCTACTGAGAGGTCCACTAGAGATCAGAAATTGTT
Right flanking sequence: Indices 166415 -- 166914
GATGTGATATGGTTCCGAAGGATGAACCGGATATGGACAGTTCCAATAAGATTTCATTCTTGAAC
AAAAATCCATTTTTGGATTTATTTCATCTATTCCATGACCGGAACAGGGGGGGATACACGTTACA
CCACGATTTTGAATCAGAAGAGAGATTTCAAGAAATGGCAGATCTATTCACTCTATCAATAACGG
AGCCGGATCTGGGATTTATTTCATCTATTCCATGACCGGAACAGGGGGGGATACACGTTACACCA
CGATTTTGAATCAGAAGAGAGATTTCAAGAAATGGCAGATCTATTCACTCTATCAATAACGGAGC
CGGATCTGGTGTATCATAAGGGATTTGCCTTTTCTATTGATTCCTACGGATTGGATCAAAAACAA
TTCTTGAATGAGGTATTCAACTCCAGGGATGAATCGAAAAAGAAATCTTTATTGGTTCTACCTCC
TATTTTTTATGAAGAGAATGAATCTTTTTATCGAAGGATCAGAAA
Found at i:166720 original size:127 final size:127
Alignment explanation
Indices: 166494--166748 Score: 510
Period size: 127 Copynumber: 2.0 Consensus size: 127
166484 ATCCATTTTT
166494 GGATTTATTTCATCTATTCCATGACCGGAACAGGGGGGGATACACGTTACACCACGATTTTGAAT
1 GGATTTATTTCATCTATTCCATGACCGGAACAGGGGGGGATACACGTTACACCACGATTTTGAAT
166559 CAGAAGAGAGATTTCAAGAAATGGCAGATCTATTCACTCTATCAATAACGGAGCCGGATCTG
66 CAGAAGAGAGATTTCAAGAAATGGCAGATCTATTCACTCTATCAATAACGGAGCCGGATCTG
166621 GGATTTATTTCATCTATTCCATGACCGGAACAGGGGGGGATACACGTTACACCACGATTTTGAAT
1 GGATTTATTTCATCTATTCCATGACCGGAACAGGGGGGGATACACGTTACACCACGATTTTGAAT
166686 CAGAAGAGAGATTTCAAGAAATGGCAGATCTATTCACTCTATCAATAACGGAGCCGGATCTG
66 CAGAAGAGAGATTTCAAGAAATGGCAGATCTATTCACTCTATCAATAACGGAGCCGGATCTG
166748 G
1 G
166749 TGTATCATAA
Statistics
Matches: 128, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 128 1.00
ACGTcount: A:0.31, C:0.20, G:0.23, T:0.26
Consensus pattern (127 bp):
GGATTTATTTCATCTATTCCATGACCGGAACAGGGGGGGATACACGTTACACCACGATTTTGAAT
CAGAAGAGAGATTTCAAGAAATGGCAGATCTATTCACTCTATCAATAACGGAGCCGGATCTG
Left flanking sequence: Indices 165994 -- 166493
GAATCCTACTGAGAGGTCCACTAGAGATCAGAAATTGTTGAAGAAACAACAAAGAATTTCTTGGG
AATCCTACAAGATCCATTCGTTCTTTTTTCTCTGACAGATGGTCAGAACTTCATCTGGGTTCGAA
TCCTACTGAGAGGTCCACTAGAGATCAGAAATTGTTGAAGAAACAACAAGATGTTTCTTTTGTCC
CTTCCAGGCGATCGGAAAATAAAGAAATGGTTAATATATTCAAGATAATTACGTATTTACAAAAT
ACCGTCTCAATTCATCCTATTTCATCAGATCCGGAAGAAACAACAAGATGTTTCTTTTGTCCCTT
CCAGGCGATCGGAAAATAAAGAAATGGTTAATATATTCAAGATAATTACGTATTTACAAAATACC
GTCTCAATTCATCCTATTTCATCAGATCCGGGATGTGATATGGTTCCGAAGGATGAACCGGATAT
GGACAGTTCCAATAAGATTTCATTCTTGAACAAAAATCCATTTTT
Right flanking sequence: Indices 166749 -- 167248
TGTATCATAAGGGATTTGCCTTTTCTATTGATTCCTACGGATTGGATCAAAAACAATTCTTGAAT
GAGGTATTCAACTCCAGGGATGAATCGAAAAAGAAATCTTTATTGGTTCTACCTCCTATTTTTTA
TGAAGAGAATGAATCTTTTTATCGAAGGATCAGAAAAAAATGGGTTCGGATCTCCTGCGGGAATG
ATTTGGAAGATCCAAAACCAAAAATAGTGGTATTTGCTAGCAACAACATAATGGAGGCAGTCAAT
CAATATAGATTGATCCGAAATCTGATTCAAATCCAATATAGCACCTATGGGTCCATAAGAAATGT
ATTGAATCGATTCTTTTTTATGAATAGATCTGATCGCAACTTCGAATATGGAATTCAAAGGGATC
AAATAGGAAATGATATTTCTGATTCAAATCCAATATAGCACCTATGGGTCCATAAGAAATGTATT
GAATCGATTCTTTTTTATGAATAGATCTGATCGCAACTTCGAATA
Found at i:167220 original size:127 final size:127
Alignment explanation
Indices: 167029--167282 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
167019 TGATCCGAAA
167029 TCTGATTCAAATCCAATATAGCACCTATGGGTCCATAAGAAATGTATTGAATCGATTCTTTTTTA
1 TCTGATTCAAATCCAATATAGCACCTATGGGTCCATAAGAAATGTATTGAATCGATTCTTTTTTA
167094 TGAATAGATCTGATCGCAACTTCGAATATGGAATTCAAAGGGATCAAATAGGAAATGATATT
66 TGAATAGATCTGATCGCAACTTCGAATATGGAATTCAAAGGGATCAAATAGGAAATGATATT
167156 TCTGATTCAAATCCAATATAGCACCTATGGGTCCATAAGAAATGTATTGAATCGATTCTTTTTTA
1 TCTGATTCAAATCCAATATAGCACCTATGGGTCCATAAGAAATGTATTGAATCGATTCTTTTTTA
167221 TGAATAGATCTGATCGCAACTTCGAATATGGAATTCAAAGGGATCAAATAGGAAATGATATT
66 TGAATAGATCTGATCGCAACTTCGAATATGGAATTCAAAGGGATCAAATAGGAAATGATATT
167283 ATGAATCATA
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.32
Consensus pattern (127 bp):
TCTGATTCAAATCCAATATAGCACCTATGGGTCCATAAGAAATGTATTGAATCGATTCTTTTTTA
TGAATAGATCTGATCGCAACTTCGAATATGGAATTCAAAGGGATCAAATAGGAAATGATATT
Left flanking sequence: Indices 166529 -- 167028
GGGGATACACGTTACACCACGATTTTGAATCAGAAGAGAGATTTCAAGAAATGGCAGATCTATTC
ACTCTATCAATAACGGAGCCGGATCTGGGATTTATTTCATCTATTCCATGACCGGAACAGGGGGG
GATACACGTTACACCACGATTTTGAATCAGAAGAGAGATTTCAAGAAATGGCAGATCTATTCACT
CTATCAATAACGGAGCCGGATCTGGTGTATCATAAGGGATTTGCCTTTTCTATTGATTCCTACGG
ATTGGATCAAAAACAATTCTTGAATGAGGTATTCAACTCCAGGGATGAATCGAAAAAGAAATCTT
TATTGGTTCTACCTCCTATTTTTTATGAAGAGAATGAATCTTTTTATCGAAGGATCAGAAAAAAA
TGGGTTCGGATCTCCTGCGGGAATGATTTGGAAGATCCAAAACCAAAAATAGTGGTATTTGCTAG
CAACAACATAATGGAGGCAGTCAATCAATATAGATTGATCCGAAA
Right flanking sequence: Indices 167283 -- 167782
ATGAATCATAGAACTATAATGAAATATACGATCAACCAACATTTCTCGAATTTGAAAAAGAGTCA
GAAGAAATGGTTCGATCCTCTTATTTTTATTTCTCGAACCGGGAGATCCATGAATCGGGATCCTA
ATGCATATAGATACAAATGGTCCAACGGGAGCAATAATTTCCAGGAGCATTTCGTTTCTGAGCAC
TTTCAAGTAGTGTTCGATCGATTACGTATTAATCAATATTCGATTGATTGGTCTGGGGTTATCGA
CAAAAAATATTTGTCTAATCCTTTCTTTTTGTCCAAGTTGATTCTCTTCTTGTCTAACTCACTTC
CTTTTTTCTTTGTGAGTTTCGGGAATATCCCCATTCATAGGTCCGAGACCCACATCTATGAATTG
AAAGGTCCGAATGATCAACTCTGCAATCAGTTGTTAGAATCAATAGGTCTTCAAATCGTTCATTT
GAAAAAATTGAAACCCTTCTTATTGGATGATCATGATACTTCCCA
Found at i:167883 original size:127 final size:127
Alignment explanation
Indices: 167657--167910 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
167647 GGTCCGAGAC
167657 CCACATCTATGAATTGAAAGGTCCGAATGATCAACTCTGCAATCAGTTGTTAGAATCAATAGGTC
1 CCACATCTATGAATTGAAAGGTCCGAATGATCAACTCTGCAATCAGTTGTTAGAATCAATAGGTC
167722 TTCAAATCGTTCATTTGAAAAAATTGAAACCCTTCTTATTGGATGATCATGATACTTCCCAA
66 TTCAAATCGTTCATTTGAAAAAATTGAAACCCTTCTTATTGGATGATCATGATACTTCCCAA
167784 CCACATCTATGAATTGAAAGGTCCGAATGATCAACTCTGCAATCAGTTGTTAGAATCAATAGGTC
1 CCACATCTATGAATTGAAAGGTCCGAATGATCAACTCTGCAATCAGTTGTTAGAATCAATAGGTC
167849 TTCAAATCGTTCATTTGAAAAAATTGAAACCCTTCTTATTGGATGATCATGATACTTCCCAA
66 TTCAAATCGTTCATTTGAAAAAATTGAAACCCTTCTTATTGGATGATCATGATACTTCCCAA
167911 AAATGGAAAT
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.34, C:0.20, G:0.15, T:0.31
Consensus pattern (127 bp):
CCACATCTATGAATTGAAAGGTCCGAATGATCAACTCTGCAATCAGTTGTTAGAATCAATAGGTC
TTCAAATCGTTCATTTGAAAAAATTGAAACCCTTCTTATTGGATGATCATGATACTTCCCAA
Left flanking sequence: Indices 167157 -- 167656
CTGATTCAAATCCAATATAGCACCTATGGGTCCATAAGAAATGTATTGAATCGATTCTTTTTTAT
GAATAGATCTGATCGCAACTTCGAATATGGAATTCAAAGGGATCAAATAGGAAATGATATTATGA
ATCATAGAACTATAATGAAATATACGATCAACCAACATTTCTCGAATTTGAAAAAGAGTCAGAAG
AAATGGTTCGATCCTCTTATTTTTATTTCTCGAACCGGGAGATCCATGAATCGGGATCCTAATGC
ATATAGATACAAATGGTCCAACGGGAGCAATAATTTCCAGGAGCATTTCGTTTCTGAGCACTTTC
AAGTAGTGTTCGATCGATTACGTATTAATCAATATTCGATTGATTGGTCTGGGGTTATCGACAAA
AAATATTTGTCTAATCCTTTCTTTTTGTCCAAGTTGATTCTCTTCTTGTCTAACTCACTTCCTTT
TTTCTTTGTGAGTTTCGGGAATATCCCCATTCATAGGTCCGAGAC
Right flanking sequence: Indices 167911 -- 168410
AAATGGAAATTCTTGATCAATGGAGGAAGAATATCACCATTTTTGTTCAATAAGATACCAAAGTG
GATGATTGACTCATTCCATACTAGAAATAATCGCGGGAAATCCTTTGATAACACGGATTCTTATT
TCTCAATGATATCCCACGATCAAGACAATTGGCTGAATCCCGTGAAACCATTTCATAGAAGTTCA
TTGATATCTTCTTTTTATAAAGCAAATCGACTTCGATTCTTGAATAATCCACATCACTTTTGCTT
CTATTGTAACAAAAGATTCCCTTTTTATGTGGAAAAGGCCCGTATCAATAATTATGATTTTACGT
ATGGACAATTCCTCAATATCTTGTTCATTCACAATAAAATATTTTCTTTGTGCGTCGGTAAAAAA
AAACATGCTTTTTTGGAGAGAGATACTATTTCACCAATCGAGTCGCAGGTATCTAACATATTCAT
ACCTAACGATTTTCCACAAAGTGGTGACGAAACGTATAACTTGTA
Found at i:169587 original size:127 final size:127
Alignment explanation
Indices: 169361--169615 Score: 510
Period size: 127 Copynumber: 2.0 Consensus size: 127
169351 GGTGGCAACA
169361 TGCTATTGGGGGGTGGTCCCATTTATGGGGTCAAATCAATACGCTCTAAGAAGAAATATTTGAAT
1 TGCTATTGGGGGGTGGTCCCATTTATGGGGTCAAATCAATACGCTCTAAGAAGAAATATTTGAAT
169426 ATCAATCTCATCGATATCCTCGATCTCTTAAGTATCATACCAAATCCCATCAATCGAATCAC
66 ATCAATCTCATCGATATCCTCGATCTCTTAAGTATCATACCAAATCCCATCAATCGAATCAC
169488 TGCTATTGGGGGGTGGTCCCATTTATGGGGTCAAATCAATACGCTCTAAGAAGAAATATTTGAAT
1 TGCTATTGGGGGGTGGTCCCATTTATGGGGTCAAATCAATACGCTCTAAGAAGAAATATTTGAAT
169553 ATCAATCTCATCGATATCCTCGATCTCTTAAGTATCATACCAAATCCCATCAATCGAATCAC
66 ATCAATCTCATCGATATCCTCGATCTCTTAAGTATCATACCAAATCCCATCAATCGAATCAC
169615 T
1 T
169616 TTTTCAAGAA
Statistics
Matches: 128, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 128 1.00
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.30
Consensus pattern (127 bp):
TGCTATTGGGGGGTGGTCCCATTTATGGGGTCAAATCAATACGCTCTAAGAAGAAATATTTGAAT
ATCAATCTCATCGATATCCTCGATCTCTTAAGTATCATACCAAATCCCATCAATCGAATCAC
Left flanking sequence: Indices 168861 -- 169360
AAGTAGCAGTCAAAAATTTGTATCCATTTTTCATGATATTATGCATGGATCGGATATATCATGGC
AAATTCTTCAGAAAAAATTGTGTCTTCCACAATGGAATCTGATAAGTGAGATTTCGAGTAAGTGT
TTACCTAATCTTCTTCTGTCCGAAGAAATGATTCATCGAAATAATGAGTCACCATTGATATCGAC
ACATCTGAGATCGCCAAATGTTCGGGAATTCCTCTATTCAATCCTTTTCCTTCTTCTTGTTGCTG
GATATCTCGTTCGTACACATCTTCTCTTTGTTTCCCAAGCCTCTAGTGAGTTACAGACGGAGTTC
GAAAAGGTCAAATCTTTGATGATTCCATCCTACATGATTGAGTTGCGAAAACTTCTGGATAGGTA
TCCTACATCTGAACTGAATTCTTTCTGGTTAAAAAATCTCCTTCTAGTTGCTCTGGGACAATTAG
GAGATTCTTTAGAAGAAATACGGGGTTCTGCTTCTGGTGGCAACA
Right flanking sequence: Indices 169616 -- 170115
TTTTCAAGAAATACGAGATATCTAAGTCATACAAGTAAAGAGATCTATTCAGTGATAAGAAAAAG
AAAAAACGTAAACGGTGATTGGATTGATGATCAAATAGAATCCTGGCATCAATCGAATCACTTTT
TCAAGAAATACGAGATATCTAAGTCATACAAGTAAAGAGATCTATTCAGTGATAAGAAAAAGAAA
AAACGTAAACGGTGATTGGATTGATGATCAAATAGAATCCTGGGTCGCGAACAGTGATTCGATTG
ATGAATACGAGATATCTAAGTCATACAAGTAAAGAGATCTATTCAGTGATAAGAAAAAGAAAAAA
CGTAAACGGTGATTGGATTGATGATCAAATAGAATCCTGGGTCGCGAACAGTGATTCGATTGATG
ATGAAGAAAGAGAATTCTTGGTTCAGTTCTCCACCTTAACGACAGAAAAAAGGATTGATCAAATT
CTATTGAGTCTGACTCATAGTGATCATTTATCAAAGAATGACTCT
Found at i:169981 original size:127 final size:127
Alignment explanation
Indices: 169625--170006 Score: 646
Period size: 127 Copynumber: 3.0 Consensus size: 127
169615 TTTTTCAAGA
169625 AATACGAGATATCTAAGTCATACAAGTAAAGAGATCTATTCAGTGATAAGAAAAAGAAAAAACGT
1 AATACGAGATATCTAAGTCATACAAGTAAAGAGATCTATTCAGTGATAAGAAAAAGAAAAAACGT
* * * ** *
169690 AAACGGTGATTGGATTGATGATCAAATAGAATCCTGGCATCAATCGAATCACTTTTTC-A-AGA-
66 AAACGGTGATTGGATTGATGATCAAATAGAATCCTGG-GTC--GCGAA-CAGTGATTCGATTGAT
169752 -
127 G
169752 AATACGAGATATCTAAGTCATACAAGTAAAGAGATCTATTCAGTGATAAGAAAAAGAAAAAACGT
1 AATACGAGATATCTAAGTCATACAAGTAAAGAGATCTATTCAGTGATAAGAAAAAGAAAAAACGT
169817 AAACGGTGATTGGATTGATGATCAAATAGAATCCTGGGTCGCGAACAGTGATTCGATTGATG
66 AAACGGTGATTGGATTGATGATCAAATAGAATCCTGGGTCGCGAACAGTGATTCGATTGATG
169879 AATACGAGATATCTAAGTCATACAAGTAAAGAGATCTATTCAGTGATAAGAAAAAGAAAAAACGT
1 AATACGAGATATCTAAGTCATACAAGTAAAGAGATCTATTCAGTGATAAGAAAAAGAAAAAACGT
169944 AAACGGTGATTGGATTGATGATCAAATAGAATCCTGGGTCGCGAACAGTGATTCGATTGATG
66 AAACGGTGATTGGATTGATGATCAAATAGAATCCTGGGTCGCGAACAGTGATTCGATTGATG
170006 A
1 A
170007 TGAAGAAAGA
Statistics
Matches: 245, Mismatches: 6, Indels: 8
0.95 0.02 0.03
Matches are distributed among these distances:
123 6 0.02
124 5 0.02
125 2 0.01
126 2 0.01
127 230 0.94
ACGTcount: A:0.42, C:0.12, G:0.21, T:0.25
Consensus pattern (127 bp):
AATACGAGATATCTAAGTCATACAAGTAAAGAGATCTATTCAGTGATAAGAAAAAGAAAAAACGT
AAACGGTGATTGGATTGATGATCAAATAGAATCCTGGGTCGCGAACAGTGATTCGATTGATG
Left flanking sequence: Indices 169125 -- 169624
TCTCGTTCGTACACATCTTCTCTTTGTTTCCCAAGCCTCTAGTGAGTTACAGACGGAGTTCGAAA
AGGTCAAATCTTTGATGATTCCATCCTACATGATTGAGTTGCGAAAACTTCTGGATAGGTATCCT
ACATCTGAACTGAATTCTTTCTGGTTAAAAAATCTCCTTCTAGTTGCTCTGGGACAATTAGGAGA
TTCTTTAGAAGAAATACGGGGTTCTGCTTCTGGTGGCAACATGCTATTGGGGGGTGGTCCCATTT
ATGGGGTCAAATCAATACGCTCTAAGAAGAAATATTTGAATATCAATCTCATCGATATCCTCGAT
CTCTTAAGTATCATACCAAATCCCATCAATCGAATCACTGCTATTGGGGGGTGGTCCCATTTATG
GGGTCAAATCAATACGCTCTAAGAAGAAATATTTGAATATCAATCTCATCGATATCCTCGATCTC
TTAAGTATCATACCAAATCCCATCAATCGAATCACTTTTTCAAGA
Right flanking sequence: Indices 170007 -- 170506
TGAAGAAAGAGAATTCTTGGTTCAGTTCTCCACCTTAACGACAGAAAAAAGGATTGATCAAATTC
TATTGAGTCTGACTCATAGTGATCATTTATCAAAGAATGACTCTGAGTGATTCGATTGATGATGA
AGAAAGAGAATTCTTGGTTCAGTTCTCCACCTTAACGACAGAAAAAAGGATTGATCAAATTCTAT
TGAGTCTGACTCATAGTGATCATTTATCAAAGAATGACTCTGGTTATCAAATGATTGAACAACCG
GGAGCAATTTACTTACGATACTTAGTTGACATTCATAAAAAGTATCTAATGAATTATGAGTTCAA
TACATCCTGTTTAGCAGAAAGACGGATATTCCTTGCTCATTATCAGACAATCACTTATTCACAAA
CTTCGTGTGGGGCTAATAGTTTTCATTTCCCATCTCATGGAAAACCCTTTTCGCTTCGCTTAGCC
CTATCCCCCTCTAGGGGTATTTTAGTGATAGGTTCTATAGGAACT
Found at i:170121 original size:127 final size:127
Alignment explanation
Indices: 169990--170243 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
169980 GGTCGCGAAC
169990 AGTGATTCGATTGATGATGAAGAAAGAGAATTCTTGGTTCAGTTCTCCACCTTAACGACAGAAAA
1 AGTGATTCGATTGATGATGAAGAAAGAGAATTCTTGGTTCAGTTCTCCACCTTAACGACAGAAAA
170055 AAGGATTGATCAAATTCTATTGAGTCTGACTCATAGTGATCATTTATCAAAGAATGACTCTG
66 AAGGATTGATCAAATTCTATTGAGTCTGACTCATAGTGATCATTTATCAAAGAATGACTCTG
170117 AGTGATTCGATTGATGATGAAGAAAGAGAATTCTTGGTTCAGTTCTCCACCTTAACGACAGAAAA
1 AGTGATTCGATTGATGATGAAGAAAGAGAATTCTTGGTTCAGTTCTCCACCTTAACGACAGAAAA
170182 AAGGATTGATCAAATTCTATTGAGTCTGACTCATAGTGATCATTTATCAAAGAATGACTCTG
66 AAGGATTGATCAAATTCTATTGAGTCTGACTCATAGTGATCATTTATCAAAGAATGACTCTG
170244 GTTATCAAAT
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.35, C:0.15, G:0.20, T:0.31
Consensus pattern (127 bp):
AGTGATTCGATTGATGATGAAGAAAGAGAATTCTTGGTTCAGTTCTCCACCTTAACGACAGAAAA
AAGGATTGATCAAATTCTATTGAGTCTGACTCATAGTGATCATTTATCAAAGAATGACTCTG
Left flanking sequence: Indices 169490 -- 169989
CTATTGGGGGGTGGTCCCATTTATGGGGTCAAATCAATACGCTCTAAGAAGAAATATTTGAATAT
CAATCTCATCGATATCCTCGATCTCTTAAGTATCATACCAAATCCCATCAATCGAATCACTTTTT
CAAGAAATACGAGATATCTAAGTCATACAAGTAAAGAGATCTATTCAGTGATAAGAAAAAGAAAA
AACGTAAACGGTGATTGGATTGATGATCAAATAGAATCCTGGCATCAATCGAATCACTTTTTCAA
GAAATACGAGATATCTAAGTCATACAAGTAAAGAGATCTATTCAGTGATAAGAAAAAGAAAAAAC
GTAAACGGTGATTGGATTGATGATCAAATAGAATCCTGGGTCGCGAACAGTGATTCGATTGATGA
ATACGAGATATCTAAGTCATACAAGTAAAGAGATCTATTCAGTGATAAGAAAAAGAAAAAACGTA
AACGGTGATTGGATTGATGATCAAATAGAATCCTGGGTCGCGAAC
Right flanking sequence: Indices 170244 -- 170743
GTTATCAAATGATTGAACAACCGGGAGCAATTTACTTACGATACTTAGTTGACATTCATAAAAAG
TATCTAATGAATTATGAGTTCAATACATCCTGTTTAGCAGAAAGACGGATATTCCTTGCTCATTA
TCAGACAATCACTTATTCACAAACTTCGTGTGGGGCTAATAGTTTTCATTTCCCATCTCATGGAA
AACCCTTTTCGCTTCGCTTAGCCCTATCCCCCTCTAGGGGTATTTTAGTGATAGGTTCTATAGGA
ACTGGACGATCCTATTTGGTCAAATACCTAGCGACAAACTCCTATGCTCCTTTCATTACGGTATT
TCTGAACAAGTTCCTGGATAACAAGCCTAAAGGTTTTCTTATTGATGATATCAATATTGATGATA
GTGACCTTGATACGGAGCTGGAGCTGCTAACTATGATGAATGCGCTAACTATGGATATGATGCCG
GAAATAGACCGATTTTATATCACCCTTCAATTCGAATTAGCAAAA
Found at i:172373 original size:127 final size:127
Alignment explanation
Indices: 172147--172401 Score: 510
Period size: 127 Copynumber: 2.0 Consensus size: 127
172137 CATCTATATA
172147 TAAACGCTGGTTTATCAAGAATACGCAAGAAAAGCACTTCGAATTGTTGATTAATCGCCAGAGAT
1 TAAACGCTGGTTTATCAAGAATACGCAAGAAAAGCACTTCGAATTGTTGATTAATCGCCAGAGAT
172212 GGCTTAGAACCAATAATTCATTATCTAATGGATCTTTCCGTTCTAATACTCTATCCGAGAGT
66 GGCTTAGAACCAATAATTCATTATCTAATGGATCTTTCCGTTCTAATACTCTATCCGAGAGT
172274 TAAACGCTGGTTTATCAAGAATACGCAAGAAAAGCACTTCGAATTGTTGATTAATCGCCAGAGAT
1 TAAACGCTGGTTTATCAAGAATACGCAAGAAAAGCACTTCGAATTGTTGATTAATCGCCAGAGAT
172339 GGCTTAGAACCAATAATTCATTATCTAATGGATCTTTCCGTTCTAATACTCTATCCGAGAGT
66 GGCTTAGAACCAATAATTCATTATCTAATGGATCTTTCCGTTCTAATACTCTATCCGAGAGT
172401 T
1 T
172402 CTCAGTATTT
Statistics
Matches: 128, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 128 1.00
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (127 bp):
TAAACGCTGGTTTATCAAGAATACGCAAGAAAAGCACTTCGAATTGTTGATTAATCGCCAGAGAT
GGCTTAGAACCAATAATTCATTATCTAATGGATCTTTCCGTTCTAATACTCTATCCGAGAGT
Left flanking sequence: Indices 171647 -- 172146
ATGATGCAAAATGGATCTTGTTCTATCGTTGATCAGAGATTTCTCTATGAAAAATACGAATCGGA
GTTTGAAGAAGGAGCCCTCGACCCACAACAGATAGAGGAGGATTTATTCAATCACATAGTTTGGG
CTCCTAGAATATGGCGCCCTTGGGGCTTTCTATTTGATTGTATCGAAAGGCCCAATGAATTGGGA
TTTCCCTATTGGGCCAGGTCATTTCGGGGCAAGCGGATCGTTTATGATGAAGAGGATGAGCTTCA
AGAGAATGATTCGGAGTTCTTGCAGAGTGGAACCATGCAGTACCAGACACGAGATAGATCTTCCA
AAGAACAAGGCTTTTTTCGAATAAGCCAATTCATTTGGGACCCTGCGGATCCACTCTTTTTCCTA
TTCAAAGATCAGCCCTTTGTCTCTGCGTTTTCACATCGAGAATTCTTTGCAGATGAAGAGATGTC
AAAGGGACTTCTTACTTCCCAAACAGATCCTCCTACATCTATATA
Right flanking sequence: Indices 172402 -- 172901
CTCAGTATTTATCAAATCTGTTCCTATCTAACGGAACGCTATTGGATCAAATGACAAAGAAATTT
TTGAGAAAAAGATGGCTTTTCCCGGATGAAATGCAAATTGGATTCATGTAACAGGAGAAAGATTT
CCCATTCCTTAGCCGGAAAGATATGTGGCCATGAAAGGGGGATTCAGTGGAACAGAATTGACTGG
GTGGTAGAGTCGTGGAAACACTTGTTTCTTAAAGATCCAAGCACCAGCTTTCGCGTATAAAGCAC
ATTCGTGGAGTACGGTTTCCACCAGAAAAAGGAGAAAGAGCTTTCATGATAGATTGAATAAGACT
AGGAAAAGATGCGCGGAGTAGAGCAGTTAGGTCAGCTCGCAAGGCTCATAACCTGTGAGTGCTGC
CCCCCTTGTTAAGGGAAACCGACCAGACCCTTCTCATGCGAACGAACCGTAGCACATGAAATGAA
ATTGATCCGTTAACGCTATCTCTGAGAAGTTGTGCTATGAGGAGG
Found at i:178206 original size:127 final size:127
Alignment explanation
Indices: 177980--178233 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
177970 TTGGAGAAGC
177980 AAATTTTTTAAAAAAGTACAAGCAACTACATCATGAAAGAAGGTTCGTAGAACTTCTCTACGCAA
1 AAATTTTTTAAAAAAGTACAAGCAACTACATCATGAAAGAAGGTTCGTAGAACTTCTCTACGCAA
178045 CTGGCATACCTTGAATCGACTCTACCCTACGCTACCATCTTTCTTCTCTTATGAAATTGCAT
66 CTGGCATACCTTGAATCGACTCTACCCTACGCTACCATCTTTCTTCTCTTATGAAATTGCAT
178107 AAATTTTTTAAAAAAGTACAAGCAACTACATCATGAAAGAAGGTTCGTAGAACTTCTCTACGCAA
1 AAATTTTTTAAAAAAGTACAAGCAACTACATCATGAAAGAAGGTTCGTAGAACTTCTCTACGCAA
178172 CTGGCATACCTTGAATCGACTCTACCCTACGCTACCATCTTTCTTCTCTTATGAAATTGCAT
66 CTGGCATACCTTGAATCGACTCTACCCTACGCTACCATCTTTCTTCTCTTATGAAATTGCAT
178234 CCGGCTTTTC
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.33, C:0.24, G:0.13, T:0.31
Consensus pattern (127 bp):
AAATTTTTTAAAAAAGTACAAGCAACTACATCATGAAAGAAGGTTCGTAGAACTTCTCTACGCAA
CTGGCATACCTTGAATCGACTCTACCCTACGCTACCATCTTTCTTCTCTTATGAAATTGCAT
Left flanking sequence: Indices 177480 -- 177979
GCCAAGTGATCGAGTTTAGTCCGAATTTGCTGTAGAAGTTGCTCCCGCTCCGGACTTACTTCAAG
GAAAGATAGGATTGGGCAATTGCCGGTTCTGGAGTTTACCTTATTTTTTATTAAGGGGAAAGGGC
TTTTTTATAGATTAAGAGGTGAGTAAGGGGGGCGGAGCTTGAGGCTTCTCAGCCGCAGGAACAGG
GCCTCCAAAAAAGGAATGAGTTCGCAATTACTACCACAGGAAAGCCGCCCCCAACTCACTTACCG
CTATTTATTCTTGGATTCTGGGGGGGACAACATTTTTTCTGGCGTTCCTTTCTATTGATGAAGAG
GGGACCTCGTGCTCTTCAAGAAATGAAGGCAAAGGCCCCCCCGAGCCCGAGTTTACCGGGGATCT
TGGAGGGGCTTCCACCAAACCGCCACCCCCGCCCTTTAGAGATAGGGGCGCAACAAAAAGTCTTC
AAAAAAGGCGCCGGAGGCCTCAAACTCATCCAGAGTTGGAGAAGC
Right flanking sequence: Indices 178234 -- 178733
CCGGCTTTTCTTATATTCAATTTTGAGTTACCCGGTAATGCCACATCCACTATTCTGTGCTCGTG
GGTATCTTAACCATTGATTCAATTGCGAAAACTACCATCTTTCTTCTCTTATGAAATTGCATCCG
GCTTTTCTTATATTCAATTTTGAGTTACCCGGTAATGCCACATCCACTATTCTGTGCTCGTGGGT
ATCTTAACCATTGATTCAATTGCGAAAACCTCTCTCTGGGGAGACCCAGAATTTAGGAGTGAAAT
AAACCGCTTGAACTAATAGAACCAGTGCTACCTCCTCCCACAGCTCCTTCTTTTCCTTCAAAGAG
GGCATTCGATGCTTCTGATTTATTTCCTTCGACACCTTTCATGTGAGCTTACGCTTCCTCAAGTC
AGTGCCACAGCTTCTTCAAATTCAATAGCAATAGCAGTCAATTCTATAGCAGTCTTCTATCCAAG
AGCTCCTGGGCAAATAAGGGTTATTTCATTCACTGGTTATTCACC
Found at i:178334 original size:127 final size:127
Alignment explanation
Indices: 178203--178457 Score: 510
Period size: 127 Copynumber: 2.0 Consensus size: 127
178193 CTACCCTACG
178203 CTACCATCTTTCTTCTCTTATGAAATTGCATCCGGCTTTTCTTATATTCAATTTTGAGTTACCCG
1 CTACCATCTTTCTTCTCTTATGAAATTGCATCCGGCTTTTCTTATATTCAATTTTGAGTTACCCG
178268 GTAATGCCACATCCACTATTCTGTGCTCGTGGGTATCTTAACCATTGATTCAATTGCGAAAA
66 GTAATGCCACATCCACTATTCTGTGCTCGTGGGTATCTTAACCATTGATTCAATTGCGAAAA
178330 CTACCATCTTTCTTCTCTTATGAAATTGCATCCGGCTTTTCTTATATTCAATTTTGAGTTACCCG
1 CTACCATCTTTCTTCTCTTATGAAATTGCATCCGGCTTTTCTTATATTCAATTTTGAGTTACCCG
178395 GTAATGCCACATCCACTATTCTGTGCTCGTGGGTATCTTAACCATTGATTCAATTGCGAAAA
66 GTAATGCCACATCCACTATTCTGTGCTCGTGGGTATCTTAACCATTGATTCAATTGCGAAAA
178457 C
1 C
178458 CTCTCTCTGG
Statistics
Matches: 128, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 128 1.00
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.38
Consensus pattern (127 bp):
CTACCATCTTTCTTCTCTTATGAAATTGCATCCGGCTTTTCTTATATTCAATTTTGAGTTACCCG
GTAATGCCACATCCACTATTCTGTGCTCGTGGGTATCTTAACCATTGATTCAATTGCGAAAA
Left flanking sequence: Indices 177703 -- 178202
TACTACCACAGGAAAGCCGCCCCCAACTCACTTACCGCTATTTATTCTTGGATTCTGGGGGGGAC
AACATTTTTTCTGGCGTTCCTTTCTATTGATGAAGAGGGGACCTCGTGCTCTTCAAGAAATGAAG
GCAAAGGCCCCCCCGAGCCCGAGTTTACCGGGGATCTTGGAGGGGCTTCCACCAAACCGCCACCC
CCGCCCTTTAGAGATAGGGGCGCAACAAAAAGTCTTCAAAAAAGGCGCCGGAGGCCTCAAACTCA
TCCAGAGTTGGAGAAGCAAATTTTTTAAAAAAGTACAAGCAACTACATCATGAAAGAAGGTTCGT
AGAACTTCTCTACGCAACTGGCATACCTTGAATCGACTCTACCCTACGCTACCATCTTTCTTCTC
TTATGAAATTGCATAAATTTTTTAAAAAAGTACAAGCAACTACATCATGAAAGAAGGTTCGTAGA
ACTTCTCTACGCAACTGGCATACCTTGAATCGACTCTACCCTACG
Right flanking sequence: Indices 178458 -- 178957
CTCTCTCTGGGGAGACCCAGAATTTAGGAGTGAAATAAACCGCTTGAACTAATAGAACCAGTGCT
ACCTCCTCCCACAGCTCCTTCTTTTCCTTCAAAGAGGGCATTCGATGCTTCTGATTTATTTCCTT
CGACACCTTTCATGTGAGCTTACGCTTCCTCAAGTCAGTGCCACAGCTTCTTCAAATTCAATAGC
AATAGCAGTCAATTCTATAGCAGTCTTCTATCCAAGAGCTCCTGGGCAAATAAGGGTTATTTCAT
TCACTGGTTATTCACCATCAACAGGTGGCTTCATGAATATCAATTACGCCCGAATCCGGCTAAAT
GCGCATTCGGTGCAACATCAGACAAACTGCTTGGCTTTGTTGTCAGTGAAAAGGGATTGAAGTGG
ATCTAGATAAAATAAGGGTCCTACAAGAAATGCCAAAGCCGAAAACCGAAAGGGAGGTCAGAAGT
TTCCTGGAGAGATAAAATTATATGGTCATATTTATTTCCCAATTA
Found at i:188487 original size:15 final size:15
Alignment explanation
Indices: 188467--188496 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
188457 TAGAATCAAT
*
188467 GATAGATAGACAAGA
1 GATAGATAAACAAGA
188482 GATAGATAAACAAGA
1 GATAGATAAACAAGA
188497 TATATATATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.23, T:0.13
Consensus pattern (15 bp):
GATAGATAAACAAGA
Left flanking sequence: Indices 187967 -- 188466
CTTCCCCTCCCTTCGTCGAGCCTTTCCTTTAATGGTTGGGGGAAGCATTCCCTTATCAGAACTTG
GCGGGCATTCTTTCCAGCCTTACTCAAATAGGGGGTGGGTTTGGTTTGAACATAGGCTCAAACAT
GATTTGAAGGGTCCTAGCTACGCCATGCGTTCAATACAAAATCTGGAAAGCTGCAGGGATGACAA
AAAGAGGGCGCTTTCCTGTGTTGCACTGAAAAAAAAAAGGACCTAAGAGAAGAGCGTCTTCTCTT
AGGTTTCTTCCTCCCGCGCCCGCCGCCGCCCGGCCCGCGTTAGAGGGGAAGATTAGCAAAGCGGG
AAAAGACAGAGGGAGGGGGAGCAGCATCTTATTCTCTTCGCGAGAACTTCCGGATCGGAGAAGCA
TTCGGAACGGGCTCCGCGTTCATTTCGTTGGCAGAAACGATCCAATCCATTCGGGGCTTCGGGGA
ACCCAAAAACGAAGTCTTTTGACTTGATTCATAGATAGAATCAAT
Right flanking sequence: Indices 188497 -- 188996
TATATATATCTTTTTTTCTCTAAAAAAAAGAGGAATAGAATAGACATCCCTTTAGATGTCTATGT
ATCCTTTATCATCTCCCAATTTTATTTATATCGTTATATCTGCTCTCTCTAAATAAAATTGAGCA
GAGGCAGCAAGACAGCCCCTATATCGAACACTCATTCCTATCTATTGATAGAAAGATCTTCGTCA
AATACCGCCTTTTTTTTTAGGAATTCCTCATATCCAAGGCAGCTTACCACAAGCACCCCACCCCA
TACGACTAGTTGGGGGGCTGTTCGCCTTTTGAATCAAACAAAGTAAGTAGTAGGGGCTTCATAGC
TACTTTCATTCTAAAGGAAACCGAAGAACCAACCTTTAGTCAATAGGAGCCCTACTTCCCTCTTT
GCGACCTCATCACGCTGTTCGCCTTTTGAATCAAACAAAGTAAGTAGTAGGGGCTTCATAGCTAC
TTTCATTCTAAAGGAAACCGAAGAACCAACCTTTAGTCAATAGGA
Found at i:188999 original size:127 final size:127
Alignment explanation
Indices: 188773--189026 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
188763 TAGTTGGGGG
188773 GCTGTTCGCCTTTTGAATCAAACAAAGTAAGTAGTAGGGGCTTCATAGCTACTTTCATTCTAAAG
1 GCTGTTCGCCTTTTGAATCAAACAAAGTAAGTAGTAGGGGCTTCATAGCTACTTTCATTCTAAAG
188838 GAAACCGAAGAACCAACCTTTAGTCAATAGGAGCCCTACTTCCCTCTTTGCGACCTCATCAC
66 GAAACCGAAGAACCAACCTTTAGTCAATAGGAGCCCTACTTCCCTCTTTGCGACCTCATCAC
188900 GCTGTTCGCCTTTTGAATCAAACAAAGTAAGTAGTAGGGGCTTCATAGCTACTTTCATTCTAAAG
1 GCTGTTCGCCTTTTGAATCAAACAAAGTAAGTAGTAGGGGCTTCATAGCTACTTTCATTCTAAAG
188965 GAAACCGAAGAACCAACCTTTAGTCAATAGGAGCCCTACTTCCCTCTTTGCGACCTCATCAC
66 GAAACCGAAGAACCAACCTTTAGTCAATAGGAGCCCTACTTCCCTCTTTGCGACCTCATCAC
189027 TTCAATTCAA
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (127 bp):
GCTGTTCGCCTTTTGAATCAAACAAAGTAAGTAGTAGGGGCTTCATAGCTACTTTCATTCTAAAG
GAAACCGAAGAACCAACCTTTAGTCAATAGGAGCCCTACTTCCCTCTTTGCGACCTCATCAC
Left flanking sequence: Indices 188273 -- 188772
GGAAGATTAGCAAAGCGGGAAAAGACAGAGGGAGGGGGAGCAGCATCTTATTCTCTTCGCGAGAA
CTTCCGGATCGGAGAAGCATTCGGAACGGGCTCCGCGTTCATTTCGTTGGCAGAAACGATCCAAT
CCATTCGGGGCTTCGGGGAACCCAAAAACGAAGTCTTTTGACTTGATTCATAGATAGAATCAATG
ATAGATAGACAAGAGATAGATAAACAAGATATATATATCTTTTTTTCTCTAAAAAAAAGAGGAAT
AGAATAGACATCCCTTTAGATGTCTATGTATCCTTTATCATCTCCCAATTTTATTTATATCGTTA
TATCTGCTCTCTCTAAATAAAATTGAGCAGAGGCAGCAAGACAGCCCCTATATCGAACACTCATT
CCTATCTATTGATAGAAAGATCTTCGTCAAATACCGCCTTTTTTTTTAGGAATTCCTCATATCCA
AGGCAGCTTACCACAAGCACCCCACCCCATACGACTAGTTGGGGG
Right flanking sequence: Indices 189027 -- 189526
TTCAATTCAAGCGCAAACCCATTTCTTAGTCATCGGGCGGAGCGCACCTTTGGTACTTCAGTAGG
GCGAGCTGTTTGATAGTGACTTCTTTCGTTTGGTAGGGCGACGAAAGGCTACTTCAATCTAGGAA
ACTCGAGAGGGTCGCCTTTGGAAGCGTTCGCCGGTAACCAAAGCGTTTGGTACTTCAGTAGGGCG
AGCTGTTTGATAGTGACTTCTTTCGTTTGGTAGGGCGACGAAAGGCTACTTCAATCTAGGAAACT
CGAGAGGGTCGCCTTTGGAAGCGTTCGCCGGTAACCAAAGCGTCACGACATAATCAAAAGGAAGG
AGTGACGCTGACTGAATTCAATCCATAAACCCGGAAACGAAACAAAGTTCGTTCCCTTTCGTCAA
GTAGGTAAAGTAGGCATACGAACCACTTTTGCTTTGCCTTAGACTCTATTGGAACAAAGCAAAGA
AGGAGGCGGAATGGAGAAAGGAAAGGGACAAGGGCGGTCTTGCTT
Found at i:189301 original size:127 final size:127
Alignment explanation
Indices: 189075--189329 Score: 510
Period size: 127 Copynumber: 2.0 Consensus size: 127
189065 GGAGCGCACC
189075 TTTGGTACTTCAGTAGGGCGAGCTGTTTGATAGTGACTTCTTTCGTTTGGTAGGGCGACGAAAGG
1 TTTGGTACTTCAGTAGGGCGAGCTGTTTGATAGTGACTTCTTTCGTTTGGTAGGGCGACGAAAGG
189140 CTACTTCAATCTAGGAAACTCGAGAGGGTCGCCTTTGGAAGCGTTCGCCGGTAACCAAAGCG
66 CTACTTCAATCTAGGAAACTCGAGAGGGTCGCCTTTGGAAGCGTTCGCCGGTAACCAAAGCG
189202 TTTGGTACTTCAGTAGGGCGAGCTGTTTGATAGTGACTTCTTTCGTTTGGTAGGGCGACGAAAGG
1 TTTGGTACTTCAGTAGGGCGAGCTGTTTGATAGTGACTTCTTTCGTTTGGTAGGGCGACGAAAGG
189267 CTACTTCAATCTAGGAAACTCGAGAGGGTCGCCTTTGGAAGCGTTCGCCGGTAACCAAAGCG
66 CTACTTCAATCTAGGAAACTCGAGAGGGTCGCCTTTGGAAGCGTTCGCCGGTAACCAAAGCG
189329 T
1 T
189330 CACGACATAA
Statistics
Matches: 128, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 128 1.00
ACGTcount: A:0.22, C:0.20, G:0.31, T:0.28
Consensus pattern (127 bp):
TTTGGTACTTCAGTAGGGCGAGCTGTTTGATAGTGACTTCTTTCGTTTGGTAGGGCGACGAAAGG
CTACTTCAATCTAGGAAACTCGAGAGGGTCGCCTTTGGAAGCGTTCGCCGGTAACCAAAGCG
Left flanking sequence: Indices 188575 -- 189074
TCCCAATTTTATTTATATCGTTATATCTGCTCTCTCTAAATAAAATTGAGCAGAGGCAGCAAGAC
AGCCCCTATATCGAACACTCATTCCTATCTATTGATAGAAAGATCTTCGTCAAATACCGCCTTTT
TTTTTAGGAATTCCTCATATCCAAGGCAGCTTACCACAAGCACCCCACCCCATACGACTAGTTGG
GGGGCTGTTCGCCTTTTGAATCAAACAAAGTAAGTAGTAGGGGCTTCATAGCTACTTTCATTCTA
AAGGAAACCGAAGAACCAACCTTTAGTCAATAGGAGCCCTACTTCCCTCTTTGCGACCTCATCAC
GCTGTTCGCCTTTTGAATCAAACAAAGTAAGTAGTAGGGGCTTCATAGCTACTTTCATTCTAAAG
GAAACCGAAGAACCAACCTTTAGTCAATAGGAGCCCTACTTCCCTCTTTGCGACCTCATCACTTC
AATTCAAGCGCAAACCCATTTCTTAGTCATCGGGCGGAGCGCACC
Right flanking sequence: Indices 189330 -- 189829
CACGACATAATCAAAAGGAAGGAGTGACGCTGACTGAATTCAATCCATAAACCCGGAAACGAAAC
AAAGTTCGTTCCCTTTCGTCAAGTAGGTAAAGTAGGCATACGAACCACTTTTGCTTTGCCTTAGA
CTCTATTGGAACAAAGCAAAGAAGGAGGCGGAATGGAGAAAGGAAAGGGACAAGGGCGGTCTTGC
TTGGCGCGAAGGCTGCTGGTTCGGGGGTAGGGTACAGTACTAAAGGTCCTCGGACTTCCAGGCGG
TTTTTCTTTTGGGCAGCTGTTCACCGTTGGATCTCGCCAATACAGCCCCCTATAGTTTTCGTTAC
CGAGATATCTTTTTTTTTCATTGTTCCCAGGGATTTTTTGGGTAATCCGCTCCCATGCTGCAAAC
AGTCAAATCTGAACTGAACCTTGTCGCTCTTCTTTCTTTCCTCGCGGGCAGGAAGCACACCAGCA
GCGTGCGTTGCGTGATTCTACTGTGTTTTTTGCTGGGTGGACAGT
Found at i:195228 original size:127 final size:127
Alignment explanation
Indices: 195002--195258 Score: 514
Period size: 127 Copynumber: 2.0 Consensus size: 127
194992 AATAGGCATT
195002 AGGCATTCTGAGCTGGAAGGACAAATGAAGGGAGGCATTACGGGCCGACTACAAGAAGCAAAGCT
1 AGGCATTCTGAGCTGGAAGGACAAATGAAGGGAGGCATTACGGGCCGACTACAAGAAGCAAAGCT
195067 TCGTAGACTCGACAAGTCGCTTATAGAATGCCGACTACTAAGTGAAGACTTTCCACTTAATA
66 TCGTAGACTCGACAAGTCGCTTATAGAATGCCGACTACTAAGTGAAGACTTTCCACTTAATA
195129 AGGCATTCTGAGCTGGAAGGACAAATGAAGGGAGGCATTACGGGCCGACTACAAGAAGCAAAGCT
1 AGGCATTCTGAGCTGGAAGGACAAATGAAGGGAGGCATTACGGGCCGACTACAAGAAGCAAAGCT
195194 TCGTAGACTCGACAAGTCGCTTATAGAATGCCGACTACTAAGTGAAGACTTTCCACTTAATA
66 TCGTAGACTCGACAAGTCGCTTATAGAATGCCGACTACTAAGTGAAGACTTTCCACTTAATA
195256 AGG
1 AGG
195259 GAAGGGGGGA
Statistics
Matches: 130, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 130 1.00
ACGTcount: A:0.34, C:0.20, G:0.26, T:0.20
Consensus pattern (127 bp):
AGGCATTCTGAGCTGGAAGGACAAATGAAGGGAGGCATTACGGGCCGACTACAAGAAGCAAAGCT
TCGTAGACTCGACAAGTCGCTTATAGAATGCCGACTACTAAGTGAAGACTTTCCACTTAATA
Left flanking sequence: Indices 194502 -- 195001
AGTACTACTCAATACTAAAGTCAAGGCGAACGGCATTCTGTTGTACAGCGACTTGTACTTAATAG
TACAACTACTTAAGTCGTACTAAAGTACCAAGGATTAACGATTCCCTTTGTTTGAATAAACGCCG
CCTATTTGAGTTTACATTCATTACAAAGTAAACCAAGCCTAACCGGTCACGAGTTTTTTTTTTGT
TGATATTTATTGAGGAGTTTGATGGAGTTTAGCTGACTGAATCCATAAACCTAGAAAGTCACCGT
CACTGGTACTTTTTTGACTCTATAGGTAGGTATAGGTATCGGTGGGGCTTGCGTAATGTAGTTGT
AGTTAAGGCTGCATTGAAGTAGCGCTTTTTCTTTTTGAAGATCTACTGAAGTACCAAAGGCGAAC
GGGGCTCCCAGGCCGGGACGTCTGGCAGAATGCTTGGCCTCCTGCGCTGGAAGCGACACCCGAAG
GGTGAGCTTCTGGCGGTTAGCTTCTAGCACTAGATAATAGGCATT
Right flanking sequence: Indices 195259 -- 195758
GAAGGGGGGATGGCTTAGCGAGCTTTATAAGGCCGACCACTACATAAGCCGCTGGCGGAGAAAGC
TCTTCGAGCTTCCCTTCATTCGGAATGCCGACTACTAAGTGAAGACTTTCCACTTAATAAGGGAA
GGGGGGATGGCTTAGCGAGCTTTATAAGGCCGACCACTACATAAGCCGCTGGCGGAGAAAGCTCT
TCGAGCTTCCCTTCATTCGTTGCTAAGCCAAGGTCCCAGGTCTCCGAGTCAGCCCGCGCTTTTTC
GAAGAATCCTGCACCCATGGGCATACGGCCTGGCAGGCCTTCCCTTTCCGCCGGAGCTTCATGGG
CGTTGCCCCGTTCCCCAATCAGATGTTTGGATGTGAGCTATACTCCGCGAGGAGCCAAACGGGCG
TATGGCCTTGTCTTGCCATTTGACCTCTCTTCCCGTGTGACTAGGAATGCTCAGTGACAACCTTT
CAATTGTCACCGCCTGGCCTCTCTTGCTACCACGGTAGCACCTAG
Found at i:195350 original size:127 final size:127
Alignment explanation
Indices: 195219--195472 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
195209 GTCGCTTATA
195219 GAATGCCGACTACTAAGTGAAGACTTTCCACTTAATAAGGGAAGGGGGGATGGCTTAGCGAGCTT
1 GAATGCCGACTACTAAGTGAAGACTTTCCACTTAATAAGGGAAGGGGGGATGGCTTAGCGAGCTT
195284 TATAAGGCCGACCACTACATAAGCCGCTGGCGGAGAAAGCTCTTCGAGCTTCCCTTCATTCG
66 TATAAGGCCGACCACTACATAAGCCGCTGGCGGAGAAAGCTCTTCGAGCTTCCCTTCATTCG
195346 GAATGCCGACTACTAAGTGAAGACTTTCCACTTAATAAGGGAAGGGGGGATGGCTTAGCGAGCTT
1 GAATGCCGACTACTAAGTGAAGACTTTCCACTTAATAAGGGAAGGGGGGATGGCTTAGCGAGCTT
195411 TATAAGGCCGACCACTACATAAGCCGCTGGCGGAGAAAGCTCTTCGAGCTTCCCTTCATTCG
66 TATAAGGCCGACCACTACATAAGCCGCTGGCGGAGAAAGCTCTTCGAGCTTCCCTTCATTCG
195473 TTGCTAAGCC
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.23
Consensus pattern (127 bp):
GAATGCCGACTACTAAGTGAAGACTTTCCACTTAATAAGGGAAGGGGGGATGGCTTAGCGAGCTT
TATAAGGCCGACCACTACATAAGCCGCTGGCGGAGAAAGCTCTTCGAGCTTCCCTTCATTCG
Left flanking sequence: Indices 194719 -- 195218
TGGAGTTTAGCTGACTGAATCCATAAACCTAGAAAGTCACCGTCACTGGTACTTTTTTGACTCTA
TAGGTAGGTATAGGTATCGGTGGGGCTTGCGTAATGTAGTTGTAGTTAAGGCTGCATTGAAGTAG
CGCTTTTTCTTTTTGAAGATCTACTGAAGTACCAAAGGCGAACGGGGCTCCCAGGCCGGGACGTC
TGGCAGAATGCTTGGCCTCCTGCGCTGGAAGCGACACCCGAAGGGTGAGCTTCTGGCGGTTAGCT
TCTAGCACTAGATAATAGGCATTAGGCATTCTGAGCTGGAAGGACAAATGAAGGGAGGCATTACG
GGCCGACTACAAGAAGCAAAGCTTCGTAGACTCGACAAGTCGCTTATAGAATGCCGACTACTAAG
TGAAGACTTTCCACTTAATAAGGCATTCTGAGCTGGAAGGACAAATGAAGGGAGGCATTACGGGC
CGACTACAAGAAGCAAAGCTTCGTAGACTCGACAAGTCGCTTATA
Right flanking sequence: Indices 195473 -- 195972
TTGCTAAGCCAAGGTCCCAGGTCTCCGAGTCAGCCCGCGCTTTTTCGAAGAATCCTGCACCCATG
GGCATACGGCCTGGCAGGCCTTCCCTTTCCGCCGGAGCTTCATGGGCGTTGCCCCGTTCCCCAAT
CAGATGTTTGGATGTGAGCTATACTCCGCGAGGAGCCAAACGGGCGTATGGCCTTGTCTTGCCAT
TTGACCTCTCTTCCCGTGTGACTAGGAATGCTCAGTGACAACCTTTCAATTGTCACCGCCTGGCC
TCTCTTGCTACCACGGTAGCACCTAGTGTGGTCAGCACCAATCGTGTTCGGGCAACGAAGCTTAC
ACTCATTCACATTGGTTCATCCTGCTATGTCCCGGGCCTTTTGCTCTTCTAACGTAAAGGGTGGC
CGGCCATTCGTCAAGGCCCAGAAATCCGCTGGACATCTCAGCGGCGGGATTGGATACCCGCATCC
GATCGAAGTTCCATTTAAGTGCCCCCCTAACATAAAGGAGAGCTG
Found at i:212195 original size:18 final size:19
Alignment explanation
Indices: 212169--212204 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
212159 GCCTCAACAG
212169 CAGAGCTAGATGC-AGATA
1 CAGAGCTAGATGCGAGATA
*
212187 CAGATCTAGATGCGAGAT
1 CAGAGCTAGATGCGAGAT
212205 GATCCCGAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.36, C:0.17, G:0.28, T:0.19
Consensus pattern (19 bp):
CAGAGCTAGATGCGAGATA
Left flanking sequence: Indices 211669 -- 212168
TTCGCTCGAATCGGAACCTTTATGCGTTGGTAGGCTTTCGACTCAATCTAATAACCTACGCCAAT
AAAAGATAAAGTTTTCGCATGGGCTCATCATCTGATGCAGAACCGATGCGAGAGGGATAATAAAT
ATGGGAGAAGCGGGGCTTTCCTTTCCACTGGTTCTTGAAAGCCCCCTTCCTTTCCAAAGATAGTA
ATTAGTTTGGGCTGGCATAAAAGATTTGATTGAATGAACGCCACCCTTGGTTGTTTTCAAACAAA
TCCAATGTTGGGCCAAGCGTTACCAGCCGGTAATAGCCGAAGGCAAAAAATACTTTTATGGAATA
AGGGCGAGAAGGAAGAGAAGAAGGATTAGTAGTTGCCTAGCCGAGGAACTTGAGGCCGACATTCA
GAGTGCGGTCCCGGAGTTCAAGACGCCGCCTAAAACTAGTGTCGGTCATAGAGAAGCATTGATTT
TTCAATGAAACAAACCCCATCTCTTGTTCCCTCCCGCCTCAACAG
Right flanking sequence: Indices 212205 -- 212704
GATCCCGAACCGATTTCATAACCACCATCCATCACCAATCACATTCCACATCCCACTTCAAACCT
TTCGATTCCTCGGGTAGCCTCCTCTATAAAGGCATTCCAGCTTCAGAGGCAGGTGAGCCGGGTCA
GGAAGGAGTTTGACTGCTGGGATGGGATCGGATCCTACTCGAAGCACTCCACCACGAATAAGAGT
CTTCAGAAAAAAATCCCTTCCCTGCTTAGAAATTAAGTTCCTAAATAGGAAAATGTGCCTTTAGT
TTGAAAATTCATCTCAGATGTCAAGTCATTTCTCGAGGAAGATTCTTTCACAGCTGATGAGCCTA
TTCTTTCACAAGAACCATGGCATGAGATGCCTCTTCCTTCGGCGAGTAGGGGGATTTCCTTTAGC
ACAACCAATTTATAGCCCGAAGAAGGGAGGAAAATCCGCATCAAGAGGACAGTCATCAGTCCCAC
AGCACTCTTGCTATTGATCGGATTAACTCTTTCGTATAATAAGAA
Found at i:221453 original size:22 final size:22
Alignment explanation
Indices: 221425--221469 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
221415 ACGCTTTGTC
221425 AGTTAATTAGAGCTAACTAACT
1 AGTTAATTAGAGCTAACTAACT
221447 AGTTAATTAGAGCTAACTAACT
1 AGTTAATTAGAGCTAACTAACT
221469 A
1 A
221470 TATAAAGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.42, C:0.13, G:0.13, T:0.31
Consensus pattern (22 bp):
AGTTAATTAGAGCTAACTAACT
Left flanking sequence: Indices 220925 -- 221424
TATTTCCGGACTTCATCTTTCCGGAAAAAAAAAAGTTCCAATTTTTCTGATCAATTCCATTTTCG
GAATACGGATGAGATCAAAAAGGCCATCATTGGGGCAAACAATGCAATAGCTTCGGTTAGAGCAA
AGCCCAAAATGGCATAACCAAATGATTGTTTAGCCAATGATGGATTTCGCGCCACGGAATGAATC
AAAGAACTGAACACGTTTCCAATACCGACAGCAGCTCCCGCTGAAGCAATTGTAGCAGCTCCGGC
ACCCATTGATTTTGCACCTTCTAACATCTCGGGTTGAGAATTCTCGTCACGCTTTTTCATTCACG
ATTTTATGTTTCCTCGGCGATTCTTCCCCTCGTTCCTTTTATCTTTGCCATCTCACTTGGAATGC
CACGGGCATTCTTTTCGATCTTGTACTAAGTTACACTGAACACTAAAAAAATCTGAAAACTACAA
GCAACTAGTAAAACTACAACAACCTCCGCGAACGGACGCTTTGTC
Right flanking sequence: Indices 221470 -- 221969
TATAAAGAAATAGAACAAGCGCGCGATACGCAGCATCAAGGTCATCGATGGCTTGGCTTTGGTGG
CTTCGGGCTAGATAGCCGTAGTAGTATAGCTGTCTTCCCTGCCTTCGCTCTTGCTGCCTCTACTG
CTGCTGGATAAAGAACTAGCCCATATGCTTTCCTTGCTCTTGCTCCTGCCTTTCCTGCTACTGGT
GATGGATCTACTAGTCATAGGTCTGGCTCTGATGCTGCTTATGCTGGCTATGGCTCTGAAAGTGG
ATCATCAGAATAATCATTTGCTGGATCGAGATCAACCGCTTAGTCAACAGCTTAATCGACTGGTG
TACCTGTCCTTGTAGGATCTGCACCTGCCCTTGTAGGATCTGCATCTGGCTTTGCCTTCGCTCTT
GCTATTTATGGTTCGGGTGCTGGATATGCTGCTAGCGTAGGGTCTGGCTCTTCACGATCTGGAAT
AAGCTCCGTTCCTATATCCCTTGGTGTGTAGCTTAGCTAGCGAAG
Found at i:221826 original size:21 final size:21
Alignment explanation
Indices: 221796--221838 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
221786 CGACTGGTGT
*
221796 ACCTGTCCTTGTAGGATCTGC
1 ACCTGCCCTTGTAGGATCTGC
221817 ACCTGCCCTTGTAGGATCTGC
1 ACCTGCCCTTGTAGGATCTGC
221838 A
1 A
221839 TCTGGCTTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.16, C:0.30, G:0.23, T:0.30
Consensus pattern (21 bp):
ACCTGCCCTTGTAGGATCTGC
Left flanking sequence: Indices 221296 -- 221795
GCCATCTCACTTGGAATGCCACGGGCATTCTTTTCGATCTTGTACTAAGTTACACTGAACACTAA
AAAAATCTGAAAACTACAAGCAACTAGTAAAACTACAACAACCTCCGCGAACGGACGCTTTGTCA
GTTAATTAGAGCTAACTAACTAGTTAATTAGAGCTAACTAACTATATAAAGAAATAGAACAAGCG
CGCGATACGCAGCATCAAGGTCATCGATGGCTTGGCTTTGGTGGCTTCGGGCTAGATAGCCGTAG
TAGTATAGCTGTCTTCCCTGCCTTCGCTCTTGCTGCCTCTACTGCTGCTGGATAAAGAACTAGCC
CATATGCTTTCCTTGCTCTTGCTCCTGCCTTTCCTGCTACTGGTGATGGATCTACTAGTCATAGG
TCTGGCTCTGATGCTGCTTATGCTGGCTATGGCTCTGAAAGTGGATCATCAGAATAATCATTTGC
TGGATCGAGATCAACCGCTTAGTCAACAGCTTAATCGACTGGTGT
Right flanking sequence: Indices 221839 -- 222338
TCTGGCTTTGCCTTCGCTCTTGCTATTTATGGTTCGGGTGCTGGATATGCTGCTAGCGTAGGGTC
TGGCTCTTCACGATCTGGAATAAGCTCCGTTCCTATATCCCTTGGTGTGTAGCTTAGCTAGCGAA
GGTCCAAGTGGAAATGACAGAAAATCCACTGACGCTTACTCTGATGCCTTTGCTCAGTCAACTCC
TTCAATAACTACAGGTGCATCACCAGAATCAACTGACCCATAAACAACTAAATCACTTGCTTAAT
CTACTGCTTAACCGACTGATGCTGCTGGATATACTACTGCTGATGCTGGTGTTTCCTTATTAATA
TAGGCAAGCTATCGATCTCGAACAGGATCTCGTCACTTTGAGTGGGTTCTTGCTATGTACACCAA
GCCTCGGGGTCACAATGACTATCCATTAGCATTGTGGCTTGGCAGAGTGAGCTTTCGCTTCCTTA
TCTTCGAGGTTTAATTATCTCCTTCCTTCTTAAAGAGATGAAACC
Found at i:224531 original size:28 final size:29
Alignment explanation
Indices: 224491--224548 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
224481 GAATCATGTT
* *
224491 CCTCTCCTTTTAG-TCGAGTGGGTCAACC
1 CCTCTCCTATTAGATAGAGTGGGTCAACC
224519 CCTCTCCTATTAGATAGAGTGGGTCAACC
1 CCTCTCCTATTAGATAGAGTGGGTCAACC
224548 C
1 C
224549 TACGGAGCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
28 12 0.44
29 15 0.56
ACGTcount: A:0.19, C:0.31, G:0.21, T:0.29
Consensus pattern (29 bp):
CCTCTCCTATTAGATAGAGTGGGTCAACC
Left flanking sequence: Indices 223991 -- 224490
TACAACTAGATTAAAAAGGAGTTCCTTTAAGATAAGGTCATCATTCATCTTCCATAGCTGACGTA
GGCGTTCAGCCAAAGCATCAACCGTTCAGTTGCTGAAAATATAGAGATAAGCTTTCCCCGTAAGC
GACCGCCCCGCCCCTGTCACAGAGCCCTAATGAACAAGCGAAAGAGTTGCAGTCAGGGGTAGCGA
TACGAAGGAATGGATGCACTTCCGCTATGGCGGGCGAGGTTCCTGATCAACGAAAGAAAGCCCGC
TCATAACAGAGCTCATGACCTTTGATCAATAGGGCATTCGCTCGTCACTCATAACAGAACTCCCC
CTGGAAGTGACAGATCTTTCACTGTCGGTCACGTGAGCGCCAGACCTGCTAGAGATGGAAGGGCA
CCACTTCTTATTTTACGGAACTCGGAGCTTTCCTACGAACAGCGCTCAGGAGCCATCAATAAGAA
AGAGGAGCTGCTCGAGCAAGGTAGAGTCTATCAAAGAATCATGTT
Right flanking sequence: Indices 224549 -- 225048
TACGGAGCTTTCAGTCTCGTGTCTATAAGACCCTACGATACGCTACAGGGAAGATGACCCTGAAC
TAGCTAGACAATGAGATGAGCTACCCAGTGAGGGAGCTAAAACCGATGTACCTATGGGACAGCCG
GTACCTTCCTTTACATATAATCCGGGGAAACCGTGAGAACATAGCTCTTAGGTACACTTGCAGAG
CAATAAAGAAAGATTGCTCAATTAATTCAAAAACAAACAGATACGCTCGGAACACATCAAGATGC
GGTCCTTCGATACAGAAGAAAAAATATTATAAAATACAGAAATGACATAACGATTGGCCCCAAGC
AATATACTTATCCAAGGATTTAACCAAAGTAGGCAGAGGTCTCTGGGCATTGTACGACTTGAATT
AAAGATGGAAGAATTGGGGGAGACCCCTTTATGTCATTGATGCGGAAACATCAAACAATGTTCTA
CTTGGGCGGCCTTGAATGCATGATAATTATGCCGTCCCTTCTACT
Found at i:243291 original size:127 final size:127
Alignment explanation
Indices: 243065--243319 Score: 510
Period size: 127 Copynumber: 2.0 Consensus size: 127
243055 TAATATTGCT
243065 GTTTTCGCAATTGAATCAATGGTTAAGATACCCACGAGCACAGAATAGTGGATGTGGCATTACCG
1 GTTTTCGCAATTGAATCAATGGTTAAGATACCCACGAGCACAGAATAGTGGATGTGGCATTACCG
243130 GGTAACTCAAAATTGAATATAAGAAAAGCCGGATGCAATTTCATAAGAGAAGAAAGATGGTA
66 GGTAACTCAAAATTGAATATAAGAAAAGCCGGATGCAATTTCATAAGAGAAGAAAGATGGTA
243192 GTTTTCGCAATTGAATCAATGGTTAAGATACCCACGAGCACAGAATAGTGGATGTGGCATTACCG
1 GTTTTCGCAATTGAATCAATGGTTAAGATACCCACGAGCACAGAATAGTGGATGTGGCATTACCG
243257 GGTAACTCAAAATTGAATATAAGAAAAGCCGGATGCAATTTCATAAGAGAAGAAAGATGGTA
66 GGTAACTCAAAATTGAATATAAGAAAAGCCGGATGCAATTTCATAAGAGAAGAAAGATGGTA
243319 G
1 G
243320 CGTAGGGTAG
Statistics
Matches: 128, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 128 1.00
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.24
Consensus pattern (127 bp):
GTTTTCGCAATTGAATCAATGGTTAAGATACCCACGAGCACAGAATAGTGGATGTGGCATTACCG
GGTAACTCAAAATTGAATATAAGAAAAGCCGGATGCAATTTCATAAGAGAAGAAAGATGGTA
Left flanking sequence: Indices 242565 -- 243064
ACATAGGTCAATCAATCCCGCCATTCCCGATTCAAGCAAAAAGACCTCTCCGATCGGGTGAAGGA
ATGCTAGTGCGTAAGCTCTTCTCAAAAGAAGAGAGGTTTTCTTCCGCTAGGCAGCAAGCATTAGA
TGAAGCCGATTTTGCCCATTTCGCATAGCCCTTCATCGACATGGGAAGAGAGCTTCAAGCAACCG
GATTACCTTTCCGGCAGTGAGCTCAGTTCAGGAACTTTTCTTCGACGCGGCAAGAGGATTTCTCA
TTGCACTAGTATAGTATCAGGAGCATGCCCAGAAGAAGATTGATGGACAAAAGGAGCTGCTATCG
AATAGGCCGTTAGTACGGTGTTATCCGCCTTCCCTGATAACTTTCCTGTTGTGCACAGTTGCTCT
TAGGCAGCTACTAAATCCGCGGTAGGGAGCATAGTAGAATTTCGAGACCTTCCTACCCTGTCGGG
ATGCAGACGATTATGCCCGAACTTATTTCCGACTTTAATATTGCT
Right flanking sequence: Indices 243320 -- 243819
CGTAGGGTAGAGTCGATTCAAGGTATGCCAGTTGCGTAGAGAAGTTCTACGAACCTTCTTTCATG
ATGTAGTTGCTTGTACTTTTTTAAAAAATTTATGCAATTTCATAAGAGAAGAAAGATGGTAGCGT
AGGGTAGAGTCGATTCAAGGTATGCCAGTTGCGTAGAGAAGTTCTACGAACCTTCTTTCATGATG
TAGTTGCTTGTACTTTTTTAAAAAATTTCTAGATTGGGCTTGGTGTTCAGTGTACCGCTCCGAAG
CTTGTGTAGCCTATGCGAAGCAAGCCTACATAGGGTACAAGATCGAAAAGAATGCATTGGATGGA
TGCCCGGGCATTGAGAAGGAAGGACGCTTTCAAAGGCGAAAGGCCATGGGGAGATACCGTCTGTG
ATCCATGGATCTCCGATCGGGAAACCGTATCCAAGCTCCGTGGCCAGTCTGCGCTCTTTGGACTT
TTCAAACTTAGCGAACTGAAACATCTTAGTAGCTAAAGGAAGGGA
Found at i:243420 original size:127 final size:127
Alignment explanation
Indices: 243289--243542 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
243279 GAAAAGCCGG
243289 ATGCAATTTCATAAGAGAAGAAAGATGGTAGCGTAGGGTAGAGTCGATTCAAGGTATGCCAGTTG
1 ATGCAATTTCATAAGAGAAGAAAGATGGTAGCGTAGGGTAGAGTCGATTCAAGGTATGCCAGTTG
243354 CGTAGAGAAGTTCTACGAACCTTCTTTCATGATGTAGTTGCTTGTACTTTTTTAAAAAATTT
66 CGTAGAGAAGTTCTACGAACCTTCTTTCATGATGTAGTTGCTTGTACTTTTTTAAAAAATTT
243416 ATGCAATTTCATAAGAGAAGAAAGATGGTAGCGTAGGGTAGAGTCGATTCAAGGTATGCCAGTTG
1 ATGCAATTTCATAAGAGAAGAAAGATGGTAGCGTAGGGTAGAGTCGATTCAAGGTATGCCAGTTG
243481 CGTAGAGAAGTTCTACGAACCTTCTTTCATGATGTAGTTGCTTGTACTTTTTTAAAAAATTT
66 CGTAGAGAAGTTCTACGAACCTTCTTTCATGATGTAGTTGCTTGTACTTTTTTAAAAAATTT
243543 CTAGATTGGG
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.31, C:0.13, G:0.24, T:0.33
Consensus pattern (127 bp):
ATGCAATTTCATAAGAGAAGAAAGATGGTAGCGTAGGGTAGAGTCGATTCAAGGTATGCCAGTTG
CGTAGAGAAGTTCTACGAACCTTCTTTCATGATGTAGTTGCTTGTACTTTTTTAAAAAATTT
Left flanking sequence: Indices 242789 -- 243288
AGGAACTTTTCTTCGACGCGGCAAGAGGATTTCTCATTGCACTAGTATAGTATCAGGAGCATGCC
CAGAAGAAGATTGATGGACAAAAGGAGCTGCTATCGAATAGGCCGTTAGTACGGTGTTATCCGCC
TTCCCTGATAACTTTCCTGTTGTGCACAGTTGCTCTTAGGCAGCTACTAAATCCGCGGTAGGGAG
CATAGTAGAATTTCGAGACCTTCCTACCCTGTCGGGATGCAGACGATTATGCCCGAACTTATTTC
CGACTTTAATATTGCTGTTTTCGCAATTGAATCAATGGTTAAGATACCCACGAGCACAGAATAGT
GGATGTGGCATTACCGGGTAACTCAAAATTGAATATAAGAAAAGCCGGATGCAATTTCATAAGAG
AAGAAAGATGGTAGTTTTCGCAATTGAATCAATGGTTAAGATACCCACGAGCACAGAATAGTGGA
TGTGGCATTACCGGGTAACTCAAAATTGAATATAAGAAAAGCCGG
Right flanking sequence: Indices 243543 -- 244042
CTAGATTGGGCTTGGTGTTCAGTGTACCGCTCCGAAGCTTGTGTAGCCTATGCGAAGCAAGCCTA
CATAGGGTACAAGATCGAAAAGAATGCATTGGATGGATGCCCGGGCATTGAGAAGGAAGGACGCT
TTCAAAGGCGAAAGGCCATGGGGAGATACCGTCTGTGATCCATGGATCTCCGATCGGGAAACCGT
ATCCAAGCTCCGTGGCCAGTCTGCGCTCTTTGGACTTTTCAAACTTAGCGAACTGAAACATCTTA
GTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGCGGCGAGCGAGAGCGGATTGGGGG
TTTGAAGAAAAACAAACACGAAGCTTCGCCCTCAGCAAAGTGTTCACTTATTTTTCGCCAGGTTT
CATTCGATTTGTTGTGGATTGGATGATGGAAAAACCAAGCCTTTACTTGATATTCTATTAGTAAA
GGGCGCAGTGAACTGTAATTGTGAAAAGGTTGGAAGATCTGGCCA
Found at i:244638 original size:127 final size:127
Alignment explanation
Indices: 244412--244666 Score: 510
Period size: 127 Copynumber: 2.0 Consensus size: 127
244402 GGAATCTTCT
244412 AGTTCTTCCTATTTGACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACA
1 AGTTCTTCCTATTTGACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACA
244477 GGCCTTGGAGGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTG
66 GGCCTTGGAGGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTG
244539 AGTTCTTCCTATTTGACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACA
1 AGTTCTTCCTATTTGACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACA
244604 GGCCTTGGAGGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTG
66 GGCCTTGGAGGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTG
244666 A
1 A
244667 AAGGCCAACC
Statistics
Matches: 128, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 128 1.00
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.22
Consensus pattern (127 bp):
AGTTCTTCCTATTTGACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACA
GGCCTTGGAGGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTG
Left flanking sequence: Indices 243912 -- 244411
CACTTATTTTTCGCCAGGTTTCATTCGATTTGTTGTGGATTGGATGATGGAAAAACCAAGCCTTT
ACTTGATATTCTATTAGTAAAGGGCGCAGTGAACTGTAATTGTGAAAAGGTTGGAAGATCTGGCC
AAAGAAGGTGATAGCCCTGTAGATTCGTTCCCATGGTTCGATCCTTCCCAGTAAAACGCGGCGTG
TTCGAATTCTGATCGCTTTTACGCGAGAAAGGGGGACCGCCCTCTAAGCCTAAGTATTCCTCAAT
GACCGATAGCGTACAAGTACCGTGAGGGAAAGGTGAAAAGAACCCTATTTAGGGAGTGCAATAGA
GAACCTGAGATCCGATGCGAACAATCAGTCGAAGGAGCGGAGCCCTTTACTTGATATTCTATTAG
TAAAGCGCACTCACTCTAACGGCGTACCTTTTGCATGATGGGTCAGCGAGGAAATGGGAACAGCG
GCTTAAGCCATTAGGTGTAGGCGCTTTCCAGAGGTGGAATCTTCT
Right flanking sequence: Indices 244667 -- 245166
AAGGCCAACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGTATGATGT
CGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCCATTTCGCCTTACCAACCCCAGG
GAAACTCCGAATACAGGCCTAGATCGTTTGTACAGACAGACTTTTTGGGTGCTAAGATCCAAAGT
CGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAATCACTTAGTGGAAAAGGAAGT
GATCGAGCGATTACAACCAGGAGGTGGGCTTGGAAGCAGCCATCCTTTGAAGAAAGCGTAATAGC
TCACTGGTCTAGCTCCATGGCACCGAAAATGTATCAGGGCTCAAGTGATTCACCGAAGCGACGAG
ACCTTGAAAGCTGCTTTTTCAAGTGTCAGTAGCGGGACGTTCTGTCAATCGGGGAAGGTTTTTGG
TGACAACGCCTGGAGATATCAGAAGTGAGAATGCTGACATGAGTA
Found at i:245415 original size:127 final size:127
Alignment explanation
Indices: 245189--245442 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
245179 GTGAAAAACA
245189 CGATCGCCTGCCAGTGGAAGGCTTTCTGCGTTCAGTCAATCTACGCAGAGTGAATCGGTCCCTAA
1 CGATCGCCTGCCAGTGGAAGGCTTTCTGCGTTCAGTCAATCTACGCAGAGTGAATCGGTCCCTAA
245254 GGAACCCCCGAAAGGGCTGCCGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTAC
66 GGAACCCCCGAAAGGGCTGCCGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTAC
245316 CGATCGCCTGCCAGTGGAAGGCTTTCTGCGTTCAGTCAATCTACGCAGAGTGAATCGGTCCCTAA
1 CGATCGCCTGCCAGTGGAAGGCTTTCTGCGTTCAGTCAATCTACGCAGAGTGAATCGGTCCCTAA
245381 GGAACCCCCGAAAGGGCTGCCGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTAC
66 GGAACCCCCGAAAGGGCTGCCGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTAC
245443 AGAACCATGC
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.21
Consensus pattern (127 bp):
CGATCGCCTGCCAGTGGAAGGCTTTCTGCGTTCAGTCAATCTACGCAGAGTGAATCGGTCCCTAA
GGAACCCCCGAAAGGGCTGCCGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTAC
Left flanking sequence: Indices 244689 -- 245188
AGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGTATGATGTCGATGGCCCGAGGTAGAGCACT
CAATGGGCTAGGGTGGCCCCCATTTCGCCTTACCAACCCCAGGGAAACTCCGAATACAGGCCTAG
ATCGTTTGTACAGACAGACTTTTTGGGTGCTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATC
GTACGCTAAGGTCCCTAAGCAATCACTTAGTGGAAAAGGAAGTGATCGAGCGATTACAACCAGGA
GGTGGGCTTGGAAGCAGCCATCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAGCTCCATGGCA
CCGAAAATGTATCAGGGCTCAAGTGATTCACCGAAGCGACGAGACCTTGAAAGCTGCTTTTTCAA
GTGTCAGTAGCGGGACGTTCTGTCAATCGGGGAAGGTTTTTGGTGACAACGCCTGGAGATATCAG
AAGTGAGAATGCTGACATGAGTAACGATAAATCCTGTGAAAAACA
Right flanking sequence: Indices 245443 -- 245942
AGAACCATGCCTGTCTGTTGGAGCGAATTGGATGATCGGGCCGAGGGCTGCCCCCTCTTCCCCTC
ACTCTCCTTTCCCTAATATGAACCTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGCCCGGTCG
CCCTACGCGACTGGCGCTTCAAAAGGTTTTTATTCGTCGTAGTTTGGCGACCTAAGGGGCGGACA
CTTTTTGTTATCTAAAGGCGAAGACTCTGAAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGC
CGGGCTCCGGCTCCGCGCACCTGCTGACACCTTTCGAAGCACTTTCTAGTGTGCGCTTTCGTTTT
CGAATGTGTCGTTCAGCGTCACGAGTCTACAAGCCTTTCTCATTTCAGTGCTCGCCTTTTGAATC
TTCAGTAGGGGCCTTTAGTCTAGAGTAGGGGTCGCGAGAGAGCAGAGCGTACCGCCCTGCCATAG
TCGCGAGTCTGTTTATAGTCGCGACTGTTGTCATAGTCAACAAGG
Found at i:245933 original size:18 final size:18
Alignment explanation
Indices: 245893--245935 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
245883 ACCGCCCTGC
245893 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
245912 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
245929 CATAGTC
1 CATAGTC
245936 AACAAGGGCG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 245393 -- 245892
AGGGCTGCCGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTACAGAACCATGCCTGTC
TGTTGGAGCGAATTGGATGATCGGGCCGAGGGCTGCCCCCTCTTCCCCTCACTCTCCTTTCCCTA
ATATGAACCTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGCCCGGTCGCCCTACGCGACTGGC
GCTTCAAAAGGTTTTTATTCGTCGTAGTTTGGCGACCTAAGGGGCGGACACTTTTTGTTATCTAA
AGGCGAAGACTCTGAAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGGCTCCGGCTCCG
CGCACCTGCTGACACCTTTCGAAGCACTTTCTAGTGTGCGCTTTCGTTTTCGAATGTGTCGTTCA
GCGTCACGAGTCTACAAGCCTTTCTCATTTCAGTGCTCGCCTTTTGAATCTTCAGTAGGGGCCTT
TAGTCTAGAGTAGGGGTCGCGAGAGAGCAGAGCGTACCGCCCTGC
Right flanking sequence: Indices 245936 -- 246435
AACAAGGGCGTTTAGGCTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTG
ACCGTACCCCAAACCGACACGGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTC
GAAGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAG
GAAAGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGGAGAGAACCATGTCGAA
GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAA
AGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACAC
GATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAGAAGTGTTATAAGCTTTGA
ATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAG
Found at i:246278 original size:127 final size:127
Alignment explanation
Indices: 246052--246305 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
246042 TAGGGCGCTT
246052 GAGAGAACCATGTCGAAGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCC
1 GAGAGAACCATGTCGAAGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCC
246117 TATCTTTTGATTAGGAAAGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGG
66 TATCTTTTGATTAGGAAAGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGG
246179 GAGAGAACCATGTCGAAGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCC
1 GAGAGAACCATGTCGAAGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCC
246244 TATCTTTTGATTAGGAAAGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGG
66 TATCTTTTGATTAGGAAAGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGG
246306 ACTCTGCTAA
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.31, C:0.20, G:0.28, T:0.20
Consensus pattern (127 bp):
GAGAGAACCATGTCGAAGGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCC
TATCTTTTGATTAGGAAAGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGG
Left flanking sequence: Indices 245552 -- 246051
TGACTCGGCCTGGCCCGGTCGCCCTACGCGACTGGCGCTTCAAAAGGTTTTTATTCGTCGTAGTT
TGGCGACCTAAGGGGCGGACACTTTTTGTTATCTAAAGGCGAAGACTCTGAAGTGGGCGAACACT
CGGCCCAGCGGGCGAACATGCCGGGCTCCGGCTCCGCGCACCTGCTGACACCTTTCGAAGCACTT
TCTAGTGTGCGCTTTCGTTTTCGAATGTGTCGTTCAGCGTCACGAGTCTACAAGCCTTTCTCATT
TCAGTGCTCGCCTTTTGAATCTTCAGTAGGGGCCTTTAGTCTAGAGTAGGGGTCGCGAGAGAGCA
GAGCGTACCGCCCTGCCATAGTCGCGAGTCTGTTTATAGTCGCGACTGTTGTCATAGTCAACAAG
GGCGTTTAGGCTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACCGTA
CCCCAAACCGACACGGGTGAACAAGTAGAGTATACTAGGGCGCTT
Right flanking sequence: Indices 246306 -- 246805
ACTCTGCTAAGTGGTAACACGATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGG
AGAAGTGTTATAAGCTTTGAATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAG
GTAGCGAAATTCCTTGTCGCATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTC
TCCGACATGGACCCGGTGAAATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTA
AGACCCCGTGCACCTTAACTATAGCTTCGCAGTGACAACCTTGATCGAATGTGTAGGATAGGTGG
GAGGTGGTGACACACAACGACCAATTCTGAAAGACCACTCTTTCGTCTAAGGATGCCTAACCGCC
GCACCGATCATTCGGGGGGGGCGGGACACTGCGAGGTAGGTAGTTTATCTGGGGCGGATGCCTCC
TAAAGAGTAACGGAGGTGTGCGAAGGTAGGCTCAAGCTAAGATTC
Found at i:252532 original size:127 final size:127
Alignment explanation
Indices: 252306--252687 Score: 755
Period size: 127 Copynumber: 3.0 Consensus size: 127
252296 TTCCAATTGA
252306 TAAGACCCATCGACCTGAGACGAAGAGAAAGGTCTATCTATTTTATTTAGTTATTCAGTTAAACC
1 TAAGACCCATCGACCTGAGACGAAGAGAAAGGTCTATCTATTTTATTTAGTTATTCAGTTAAACC
252371 AATAATTCGTTCTTGGAGCAGATAGCAACAACCATTTCATCAGACATGCGTATTTTTGATTT
66 AATAATTCGTTCTTGGAGCAGATAGCAACAACCATTTCATCAGACATGCGTATTTTTGATTT
252433 TAAGACCCATCGACCTGAGACGAAGAGAAAGGTCTATCTATTTTATTTAGTTATTCAGTTAAACC
1 TAAGACCCATCGACCTGAGACGAAGAGAAAGGTCTATCTATTTTATTTAGTTATTCAGTTAAACC
252498 AATAATTCGTTCTTGGAGCAGATAGCAACAACCATTTCATCAGACATGCGTATTTTTGATTT
66 AATAATTCGTTCTTGGAGCAGATAGCAACAACCATTTCATCAGACATGCGTATTTTTGATTT
*
252560 TCAGACCCATCGACCTGAGACGAAGAGAAAGGTCTATCTATTTTATTTAGTTATTCAGTTAAACC
1 TAAGACCCATCGACCTGAGACGAAGAGAAAGGTCTATCTATTTTATTTAGTTATTCAGTTAAACC
252625 AATAATTCGTTCTTGGAGCAGATAGCAACAACCATTTCATCAGACATGCGTATTTTTGATTT
66 AATAATTCGTTCTTGGAGCAGATAGCAACAACCATTTCATCAGACATGCGTATTTTTGATTT
252687 T
1 T
252688 CTGCATTAAT
Statistics
Matches: 254, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 254 1.00
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.33
Consensus pattern (127 bp):
TAAGACCCATCGACCTGAGACGAAGAGAAAGGTCTATCTATTTTATTTAGTTATTCAGTTAAACC
AATAATTCGTTCTTGGAGCAGATAGCAACAACCATTTCATCAGACATGCGTATTTTTGATTT
Left flanking sequence: Indices 251806 -- 252305
AGCTGCCACTGCAATAGCCCTGTCTTCTCTGTCCGGCGAATATTATATATATATAGCTTCTTCCC
TTAGCTAGGTACGGATCTTTCGAGCAATCAATCAATCTGCCCAAATAAGTCACTTCCTGCTAAAA
GTGGAGTTCCTTTTGGGAAGGTAGATTGATACAATAGAAACCTATGGTAAAATGCCCGCCCGTAA
CCCAGCAGATAAAGTACATTACATAGTCTGTTTTAGGGATTGGCGACTTACCCATTCAGTGACTT
TGGCACTGGGCGTTCCCAAAATGGGTACTATCGGGTCGGGCAATAATAGACGCCTGTTGGCATTC
CAGCCTTCCTTCTCCTTTCAGGGCCTATCCGAAAGAGAATCAAGTACTTCTTGGTCGTGAATATC
TGAATAGGACGAACCGCCCCCGTGGATATCTTTGCTTCGGAACAAAACAATTAGAATTAGGCTCG
GTCAACTGGAATGTGTATTATCCATATAGGGGATCTTCCAATTGA
Right flanking sequence: Indices 252688 -- 253187
CTGCATTAATGGAAATTTTTGGATGTAGTGAGCAATAGGCTCTGGTTGTTCGCTGTTCAAGAATT
CTTGTTTAGGCAGTTCATACCATCCATACATAGTGTTTTGATCTAAGATTTCAGGTTTGGGTGCT
CATGCTCCTATCTTGCCCGCCCATGCTTCTTTCAAAGCATTGAAATAAGACAAGACATAATAAGA
GTCATTAACTCAAAAGGAAGATGGAACTCAACCAGGACTTTGTGCAGGAAAACCCATCTACGAAA
GTCTGTCCTCCCCCTTTCCGTTGCTTCAATCAAATAAGATGACGTTCAGCCGGAGCTGCTGGCCT
CAGCCCTTCCTCGTCAATTCAACCTGAGGGCAATCTGTCCCTGAGCTGCTTTGGCAGAAAGATGA
AGGTTCCAGACTTTGGAGACCTAATCCAAACAGCTGGTAGTTGGGCTGACTTGGAGGAGTCTTTC
TCATATTCTGACTTGAATGACTCGGACTCGTCGGCTTTCAAAGAA
Found at i:266420 original size:127 final size:127
Alignment explanation
Indices: 266194--266447 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
266184 TCCCGCGAAG
266194 CGAATGAAGGGAAGCTCGAAGAGCTTTCTCCGCCAGCGGCTTATGTAGTGGTCGGCCTTATAAAG
1 CGAATGAAGGGAAGCTCGAAGAGCTTTCTCCGCCAGCGGCTTATGTAGTGGTCGGCCTTATAAAG
266259 CTCGCTAAGCCATCCCCCCTTCCCTTATTAAGTGGAAAGTCTTCACTTAGTAGTCGGCATTC
66 CTCGCTAAGCCATCCCCCCTTCCCTTATTAAGTGGAAAGTCTTCACTTAGTAGTCGGCATTC
266321 CGAATGAAGGGAAGCTCGAAGAGCTTTCTCCGCCAGCGGCTTATGTAGTGGTCGGCCTTATAAAG
1 CGAATGAAGGGAAGCTCGAAGAGCTTTCTCCGCCAGCGGCTTATGTAGTGGTCGGCCTTATAAAG
266386 CTCGCTAAGCCATCCCCCCTTCCCTTATTAAGTGGAAAGTCTTCACTTAGTAGTCGGCATTC
66 CTCGCTAAGCCATCCCCCCTTCCCTTATTAAGTGGAAAGTCTTCACTTAGTAGTCGGCATTC
266448 TATAAGCGAC
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.27
Consensus pattern (127 bp):
CGAATGAAGGGAAGCTCGAAGAGCTTTCTCCGCCAGCGGCTTATGTAGTGGTCGGCCTTATAAAG
CTCGCTAAGCCATCCCCCCTTCCCTTATTAAGTGGAAAGTCTTCACTTAGTAGTCGGCATTC
Left flanking sequence: Indices 265694 -- 266193
GTTTTTCGTGCTATACACCACGTTGAGAAAGACCAACTTCCTATGTACCGTACCATTTTTGTACC
TCGAAAGGGGGGTCCTCCTTATGATGCTTCGGACGGCTGTCCGAAGTGCAAGGGGTAAACTCGGA
CTCGGATAGGATAGGATTGTGCGTGCCGGGCCCTTCGGGTGTCATATTTTGGCCGAGTTTACCGT
ACCTCCGGCCCCTATGTTACGCGGCCGTAATATTTTGTTACGTTCCACCGCTGTTACGCCAGAAA
TAAAAGGTTCCACACGAGCTCCCGTTCTGCGGCGTGGTGGCAGGACCGCTAGGGGATTGGCTCCG
GGTGTAGATAGGGTAAAATCTGCAGGGGTCATGCAAATACATAGGCCCCTTCTCTTTTGGATGAA
TGGGGTGGTTTAGAAGGCGCTTTCCGATCTACGGTCCCTCGGAGCGAAGGGTTAGGCAGGTAGTA
CGGGCCCTCTGACTTCCAGCTATGTGCTGTGCGGCTCCCGCGAAG
Right flanking sequence: Indices 266448 -- 266947
TATAAGCGACTTGTCGAGTCTACGAAGCTTTGCTTCTTGTAGTCGGCCCGTAATGCCTCCCTTCA
TTTGTCCTTCCAGCTCAGAATGCCTTATTAAGTGGAAAGTCTTCACTTAGTAGTCGGCATTCTAT
AAGCGACTTGTCGAGTCTACGAAGCTTTGCTTCTTGTAGTCGGCCCGTAATGCCTCCCTTCATTT
GTCCTTCCAGCTCAGAATGCTTGGCCTCCTGCGCCAAGTCGATCTTTTAGGCTTGGCTTCGTCCC
GGAAGCGAAGCTTCTACGACGAGTCGCTTCTCCCCTTCTATACTCTCTCTGGCGGAGAAAGCTCG
AAGAGCTTACGCTTACTCTCAGCCTCTTTGATTGGTAGGCGGGCGGGCTAAGCCCCCTACTTAAG
ATTCCATTCATAAGGGTAATTTTCTGTTGTCGTGACGCGTTAGGCCGACTACTTTACTATAGGCA
ACTTCTAGCTTCTATAGTGGCCCTTCCACTTTGGTGTAGTTGTAG
Found at i:266539 original size:127 final size:127
Alignment explanation
Indices: 266408--266662 Score: 510
Period size: 127 Copynumber: 2.0 Consensus size: 127
266398 TCCCCCCTTC
266408 CCTTATTAAGTGGAAAGTCTTCACTTAGTAGTCGGCATTCTATAAGCGACTTGTCGAGTCTACGA
1 CCTTATTAAGTGGAAAGTCTTCACTTAGTAGTCGGCATTCTATAAGCGACTTGTCGAGTCTACGA
266473 AGCTTTGCTTCTTGTAGTCGGCCCGTAATGCCTCCCTTCATTTGTCCTTCCAGCTCAGAATG
66 AGCTTTGCTTCTTGTAGTCGGCCCGTAATGCCTCCCTTCATTTGTCCTTCCAGCTCAGAATG
266535 CCTTATTAAGTGGAAAGTCTTCACTTAGTAGTCGGCATTCTATAAGCGACTTGTCGAGTCTACGA
1 CCTTATTAAGTGGAAAGTCTTCACTTAGTAGTCGGCATTCTATAAGCGACTTGTCGAGTCTACGA
266600 AGCTTTGCTTCTTGTAGTCGGCCCGTAATGCCTCCCTTCATTTGTCCTTCCAGCTCAGAATG
66 AGCTTTGCTTCTTGTAGTCGGCCCGTAATGCCTCCCTTCATTTGTCCTTCCAGCTCAGAATG
266662 C
1 C
266663 TTGGCCTCCT
Statistics
Matches: 128, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 128 1.00
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.34
Consensus pattern (127 bp):
CCTTATTAAGTGGAAAGTCTTCACTTAGTAGTCGGCATTCTATAAGCGACTTGTCGAGTCTACGA
AGCTTTGCTTCTTGTAGTCGGCCCGTAATGCCTCCCTTCATTTGTCCTTCCAGCTCAGAATG
Left flanking sequence: Indices 265908 -- 266407
CGCGGCCGTAATATTTTGTTACGTTCCACCGCTGTTACGCCAGAAATAAAAGGTTCCACACGAGC
TCCCGTTCTGCGGCGTGGTGGCAGGACCGCTAGGGGATTGGCTCCGGGTGTAGATAGGGTAAAAT
CTGCAGGGGTCATGCAAATACATAGGCCCCTTCTCTTTTGGATGAATGGGGTGGTTTAGAAGGCG
CTTTCCGATCTACGGTCCCTCGGAGCGAAGGGTTAGGCAGGTAGTACGGGCCCTCTGACTTCCAG
CTATGTGCTGTGCGGCTCCCGCGAAGCGAATGAAGGGAAGCTCGAAGAGCTTTCTCCGCCAGCGG
CTTATGTAGTGGTCGGCCTTATAAAGCTCGCTAAGCCATCCCCCCTTCCCTTATTAAGTGGAAAG
TCTTCACTTAGTAGTCGGCATTCCGAATGAAGGGAAGCTCGAAGAGCTTTCTCCGCCAGCGGCTT
ATGTAGTGGTCGGCCTTATAAAGCTCGCTAAGCCATCCCCCCTTC
Right flanking sequence: Indices 266663 -- 267162
TTGGCCTCCTGCGCCAAGTCGATCTTTTAGGCTTGGCTTCGTCCCGGAAGCGAAGCTTCTACGAC
GAGTCGCTTCTCCCCTTCTATACTCTCTCTGGCGGAGAAAGCTCGAAGAGCTTACGCTTACTCTC
AGCCTCTTTGATTGGTAGGCGGGCGGGCTAAGCCCCCTACTTAAGATTCCATTCATAAGGGTAAT
TTTCTGTTGTCGTGACGCGTTAGGCCGACTACTTTACTATAGGCAACTTCTAGCTTCTATAGTGG
CCCTTCCACTTTGGTGTAGTTGTAGTTTTTTATTGGTACTGAATGAACATATCAAACAAAGGCGA
GCAGTATAAGCCCTTCTCCGGCCTGGGAAAAGCAGCGAACTCTAGAAGCTAGGGCTTTGTTCACC
TTTGGACACGAACACTATTCCGTTCTCAGCGGAAACCCGCCTTAGAGATTGAACGTCGACTTATC
TTATTGCCGTTCAATCTAAGACAGCGCTGATAGCTTGTAGTGAAC
Found at i:276779 original size:15 final size:15
Alignment explanation
Indices: 276759--276788 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
276749 ATTGACTTGT
276759 AATAGTAGTAGAAGA
1 AATAGTAGTAGAAGA
276774 AATAGTAGTAGAAGA
1 AATAGTAGTAGAAGA
276789 TTGACTACTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.27, T:0.20
Consensus pattern (15 bp):
AATAGTAGTAGAAGA
Left flanking sequence: Indices 276259 -- 276758
ACTGAGTTTCCTCCTCCGTTTTTAGTAACAAAATGAACCAGAAGTAGGACCAAACAGAGAGTTAG
CAGCATAAACAAAGATGGATTTGTGAATGAGAAATACAAGTTTCCTATATTCATAGGAATCAATG
GGAGAATGGCAAATTGCTCAAGTGGGCTGGGGATGGGGACCTGCCCCGCTAGATTCAGAGCATAC
GTATAGGCTTCACCTTGTACTCCGTTTATGTTCAAATCATTCAAAAGGAACTCCATAAAAGGGAT
ATTGTCGCTTTCCCCATGTAAAGCTTCGGCCGCAGCCAGAACATCTTCGGGACTCCTGTTAATCA
TCAACTCCCCTAATTTAGCGTGTATATCAGATTGAAGCTCTACTATACGTTCACTTGAAGGGTTA
AGACCAGGATGGTCTTCGAAAACCCCATTAGAAGAACCCTGAGTGCCAGAAGTGCCAGATGATTG
ACTACTATAATCGTTAATAGTCGTCGTTGATTGAGATTGACTTGT
Right flanking sequence: Indices 276789 -- 277288
TTGACTACTATTAAGACTGTTTTCATCAAAGAGAAAGATGCGTGGAAATCGAGGCATGATTGATT
GAGAAAAAAGGATTCCCTCCAGACAGACCGAACTCCATCAAGCCTGTAGGAGTAGTGAAGAACTA
TAGAGAGTTGTGGTTGGTTGTTGACCAACGGAAAGCATGGGAGAAAGATGCACAAAGGAAAAAGG
GATAGGGAAGACATGGGATGGAAAACAAAAATCTACCCGGAAAGGGAAAGCACAAATTCGAGAGC
TTGGACAAAGTGGGGACTCTGGGTCCCTTGATCGAGAAGTCCTAAATAGATCTCGTTTAGGGACT
GAATGAACCCCCTCCTCTAGAAAAAAAAGACGTTGGGCTACCTCTTGGAGATTGACTTCTGTTGG
TAAATTCACAGCCTCAGTAGTATCCCTATAGACTCTCCAAAGAATTTCGAGTTGGGAAACTATTT
TCTCCTTAACAACATCTATGGCTAAATCCGCTATTTTGGTTTCCA
Found at i:277704 original size:127 final size:127
Alignment explanation
Indices: 277351--277732 Score: 587
Period size: 127 Copynumber: 3.0 Consensus size: 127
277341 GCTACAGGCA
277351 GAGCCAAACCCATCCTAGAAATGAAATCCGCAACGAGTTGATCCATAATGAGTATTAGAGTCAAG
1 GAGCCAAACCCATCCTAGAAATGAAATCCGCAACGAGTTGATCCATAATGAGTATTAGAGTCAAG
* * *** ***
277416 AGTTCTTAAAGAAGACCGCCAACTCGTATCAGCCCTAACGGCTACAA--GAATAG--CTAC-AGG
66 AGTTCTTAAAGAAGACCGCCAACTCGTAT---CCCGAA--GATACAAGCGACCGGTCCT-CTTCT
*
277476 C-A
125 CTT
277478 GAGCCAAACCCATCCTAGAAATGAAATCCGCAACGAGTTGATCCATAATGAGTATTAGAGTCAAG
1 GAGCCAAACCCATCCTAGAAATGAAATCCGCAACGAGTTGATCCATAATGAGTATTAGAGTCAAG
277543 AGTTCTTAAAGAAGACCGCCAACTCGTATCCCGAAGATACAAGCGACCGGTCCTCTTCTCTT
66 AGTTCTTAAAGAAGACCGCCAACTCGTATCCCGAAGATACAAGCGACCGGTCCTCTTCTCTT
277605 GAGCCAAACCCATCCTAGAAATGAAATCCGCAACGAGTTGATCCATAATGAGTATTAGAGTCAAG
1 GAGCCAAACCCATCCTAGAAATGAAATCCGCAACGAGTTGATCCATAATGAGTATTAGAGTCAAG
277670 AGTTCTTAAAGAAGACCGCCAACTCGTATCCCGAAGATACAAGCGACCGGTCCTCTTCTCTT
66 AGTTCTTAAAGAAGACCGCCAACTCGTATCCCGAAGATACAAGCGACCGGTCCTCTTCTCTT
277732 G
1 G
277733 TTCTTGCTCT
Statistics
Matches: 240, Mismatches: 9, Indels: 12
0.92 0.03 0.05
Matches are distributed among these distances:
122 6 0.03
124 8 0.03
125 1 0.00
126 3 0.01
127 222 0.93
ACGTcount: A:0.34, C:0.25, G:0.19, T:0.21
Consensus pattern (127 bp):
GAGCCAAACCCATCCTAGAAATGAAATCCGCAACGAGTTGATCCATAATGAGTATTAGAGTCAAG
AGTTCTTAAAGAAGACCGCCAACTCGTATCCCGAAGATACAAGCGACCGGTCCTCTTCTCTT
Left flanking sequence: Indices 276851 -- 277350
ATTGAGAAAAAAGGATTCCCTCCAGACAGACCGAACTCCATCAAGCCTGTAGGAGTAGTGAAGAA
CTATAGAGAGTTGTGGTTGGTTGTTGACCAACGGAAAGCATGGGAGAAAGATGCACAAAGGAAAA
AGGGATAGGGAAGACATGGGATGGAAAACAAAAATCTACCCGGAAAGGGAAAGCACAAATTCGAG
AGCTTGGACAAAGTGGGGACTCTGGGTCCCTTGATCGAGAAGTCCTAAATAGATCTCGTTTAGGG
ACTGAATGAACCCCCTCCTCTAGAAAAAAAAGACGTTGGGCTACCTCTTGGAGATTGACTTCTGT
TGGTAAATTCACAGCCTCAGTAGTATCCCTATAGACTCTCCAAAGAATTTCGAGTTGGGAAACTA
TTTTCTCCTTAACAACATCTATGGCTAAATCCGCTATTTTGGTTTCCAAATTCAGACTATTTGAT
GGATCATTCGGCCAGCCCTAACGGCTACAAGAATAGCTACAGGCA
Right flanking sequence: Indices 277733 -- 278232
TTCTTGCTCTACTAATTCATAAAGACGGAAATCACCGGTTGGGTTGGTCCAACCGAGAAAGACAT
GGGACTTGTTGGGCATTGTTTGGGATTTCATTTCATACGCTATTTCGATTTAAATTTCACTTTAT
TGGCTTTCCTGCCTTTAGGGTTAGGACTCATCTTTACTTCCTTAATGTACTGGGACTTTCTTAAG
GACTCTAACTTATTGAATGCACTATACGCTTATTAATGAAGTGCTCCTCTCTGAGTCTCTCTAAG
CAGCGGATAAGCGGATGCATTTTAGGAAAATAGGTTGTTCTTTTGAGAGACGGAGATGGAACTAA
GGGGCTTGGGGGGGTCCTCCCCCGGCCTACTCATTTTTGATTAAATTAATAGGGCTAGGAAGGGA
AAGCAAGGAGATAAATAAAGAAAGAAAGTCATTCGATTCCCGATGAGCGGATGAGCCTTGACCTT
TTGCCACAGAGCAAACAACGAAAGACCGATCCAGATTCACCTCAG
Found at i:286212 original size:127 final size:127
Alignment explanation
Indices: 285986--286241 Score: 512
Period size: 127 Copynumber: 2.0 Consensus size: 127
285976 TTTAATGTGG
285986 CTCCCCTCTTTTGCAATCAGTTTCGCTACAGCACCTGCTGCTCTAGCTAATTGTCCACCCTTTCC
1 CTCCCCTCTTTTGCAATCAGTTTCGCTACAGCACCTGCTGCTCTAGCTAATTGTCCACCCTTTCC
286051 AAGTGTGATTTCTATGTTATGTATGGCCGTGCCTAAGGGCATATCGGTTGAAGTAGATTCTT
66 AAGTGTGATTTCTATGTTATGTATGGCCGTGCCTAAGGGCATATCGGTTGAAGTAGATTCTT
286113 CTCCCCTCTTTTGCAATCAGTTTCGCTACAGCACCTGCTGCTCTAGCTAATTGTCCACCCTTTCC
1 CTCCCCTCTTTTGCAATCAGTTTCGCTACAGCACCTGCTGCTCTAGCTAATTGTCCACCCTTTCC
286178 AAGTGTGATTTCTATGTTATGTATGGCCGTGCCTAAGGGCATATCGGTTGAAGTAGATTCTT
66 AAGTGTGATTTCTATGTTATGTATGGCCGTGCCTAAGGGCATATCGGTTGAAGTAGATTCTT
286240 CT
1 CT
286242 TTTTGATCAA
Statistics
Matches: 129, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 129 1.00
ACGTcount: A:0.19, C:0.26, G:0.20, T:0.36
Consensus pattern (127 bp):
CTCCCCTCTTTTGCAATCAGTTTCGCTACAGCACCTGCTGCTCTAGCTAATTGTCCACCCTTTCC
AAGTGTGATTTCTATGTTATGTATGGCCGTGCCTAAGGGCATATCGGTTGAAGTAGATTCTT
Left flanking sequence: Indices 285486 -- 285985
GCGGGGGTAGGGGCGGATGTAGCCAAGTGGATCAAGGCAGTGGATTGTGAATTCACCATGCGCGG
GTTCAATTCCCGTCGTTCGCCCATAACTTTAAGCTTATCAATCCATTTTTTTTTTTTAATGATTC
GCTACAGATTTCTTTTTTTTCTTTTGTAAAGACGAAGAAAAAATTATAATTTCTCTCCACGGCGA
CGAAGAATAAAATTATCACTATATTTATTCCCTTTTCTACTTCTTCTTCCAAGTGCAGGATAACC
CCAACCAAGGGGTTGTTGGTTTTTTTCTACCAATTGGGGCCCTCCCTTCACCACCCCCATGGGGA
TGGTCTACAGGGTTCATAACTATTCCTCTTACTACAGGACGCTTACCTAGCCAACACTTAGATCC
GGCTCTACCCAAACTTTTCTGGTTCACCCCAACATTCCCCACTTGTCCGACTGTTGCTGAGCAGT
TTTTGGATATCAAACGGACCTCCCCAGAAGGTAATTTTAATGTGG
Right flanking sequence: Indices 286242 -- 286741
TTTTGATCAATCAAAACCCCTTCCCAAACTGTACAAGCTTCTTCCAAAGCATACGGCTTTCTGGA
TGTAGATGATGATATCTATACAGATGGATCTTATATATATCGTACGTAGAATGAAGTACCACATG
AGTGGATATATAGGAATCCAAATCTGCCGAATCACTCATGTTATGATCTTCTACATCCTAGGTCT
TCCCGTTCCGTCATCTGGCTTATGTTCTTCATGTAGCATTCAGACCGAATGACTCTATGAAATTA
CGTCGATACTTCCACATATTATGGGTAACATAGGAGACATCTCTATTTTTCCCCCGGGGAATCTT
TAGAATTCCCACTGCTTAGCTTTCAATTCGCCTCTGACCATCAAATGAAATGTGAATAACCCGTC
CTCCTCTCTTTGAAACAAGGGGCGCTTCCGGTTCTGTCGGTGCTTGAAACAATTTTGTCTTCTCC
ATATTACTATATCTCTAGAGTCAATAATTTTATATGAGGAACTAC
Found at i:287404 original size:127 final size:127
Alignment explanation
Indices: 287178--287431 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
287168 TTTACCACAA
287178 CGGTGCTGTCCATAGATCAAATTATTTCGTGGATTGGATTTCACTTGACTGTCTACGGCTCCATT
1 CGGTGCTGTCCATAGATCAAATTATTTCGTGGATTGGATTTCACTTGACTGTCTACGGCTCCATT
287243 GCGTGTGCTCGAAGTAGAAGTTTTGTATAAATGTATCGCCATGCTATTAAGTATTTTGATTT
66 GCGTGTGCTCGAAGTAGAAGTTTTGTATAAATGTATCGCCATGCTATTAAGTATTTTGATTT
287305 CGGTGCTGTCCATAGATCAAATTATTTCGTGGATTGGATTTCACTTGACTGTCTACGGCTCCATT
1 CGGTGCTGTCCATAGATCAAATTATTTCGTGGATTGGATTTCACTTGACTGTCTACGGCTCCATT
287370 GCGTGTGCTCGAAGTAGAAGTTTTGTATAAATGTATCGCCATGCTATTAAGTATTTTGATTT
66 GCGTGTGCTCGAAGTAGAAGTTTTGTATAAATGTATCGCCATGCTATTAAGTATTTTGATTT
287432 TAGTTCTTTT
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.23, C:0.17, G:0.22, T:0.39
Consensus pattern (127 bp):
CGGTGCTGTCCATAGATCAAATTATTTCGTGGATTGGATTTCACTTGACTGTCTACGGCTCCATT
GCGTGTGCTCGAAGTAGAAGTTTTGTATAAATGTATCGCCATGCTATTAAGTATTTTGATTT
Left flanking sequence: Indices 286678 -- 287177
AAACAATTTTGTCTTCTCCATATTACTATATCTCTAGAGTCAATAATTTTATATGAGGAACTACT
GAACTCAATCACTTGCTGCCGTTACTCTTCAGTTTTCTGTTGAGGTCTATCCTGTAGAGGTACTC
AAATTGGATCAGTGATCGATTTCTAGGTTTCGTCGTAAACCTAATTGGTTACTTCCAATTACGTA
AATCAATAGTTCAAACCGCACTCAAAGGTAGGGCATTTCCCATTTTTATAGGAACTTCTGTACCA
GAAACAATGGTATCTCCAATTATAGCCCCTCTGGGATGTAAAATATATCTCTTCTCACCATCCCC
ATAGTGTATGAGACAAATGTATGCATTTCGATTAGGGTCGTATTCTATGGTTACGATTCTACCAT
ATACGTCTTTTTCATTCCGTCGAAAATCGATTTTACGGTATAGACGTTTATGACCTCCCCCTCTA
TGCCCTGCGGTAATGATGCCTCTGGCATTACGACCTTTACCACAA
Right flanking sequence: Indices 287432 -- 287931
TAGTTCTTTTCTTTCTAAGAGGTGGAATAGAATAACCTGGTTGAAGCGTAATGATCATACGTCTG
TAATGCATTGTATGTCCCATAAAAAGCCCCATTCTTCTACCCTTTCCCGGGAGTCGATGACTATT
CATAGCTATTACCTTGACACCAAGTTCGACCCAATGCTTTATTTCTGTCCTAGTTGATCCTGATT
CCACATTATAAGTATATTGATTTTTCCCCAATAACCGAATACTTTTGTCTGTAAATACTGCATAT
TTGATTCCATCCATTTTCTTCCTTATGAGTTCGAGTCTCAATAAGAATGCTAGTTCTTACTGTTC
ATATGTTATGATATGAATATACCACACCAATTCGTTATGTATGGATGATGAGATTCCATTGATAC
AGAGCCAATTCCAATAGACTTATTGGATTGGAGGGTCCGATTGGCGTGCATCCAGTAGGAATTGA
ACCTACGAATTCGCCAATTATGAGTTGGGCGCTTTCACCATTCAG
Found at i:288218 original size:127 final size:127
Alignment explanation
Indices: 288068--288323 Score: 512
Period size: 127 Copynumber: 2.0 Consensus size: 127
288058 GAGAGAGATC
288068 CAGAATTCTCACTATTTCTTAGATTCATGGACCCAATTCAATTCAGTGGGATCTTTCATTCACAT
1 CAGAATTCTCACTATTTCTTAGATTCATGGACCCAATTCAATTCAGTGGGATCTTTCATTCACAT
288133 TTTTTTCCACCAAGAACGTTTTATAAAACTCTTTGACCCCCGAATTTGGAGTATCCTACTTT
66 TTTTTTCCACCAAGAACGTTTTATAAAACTCTTTGACCCCCGAATTTGGAGTATCCTACTTT
288195 CAGAATTCTCACTATTTCTTAGATTCATGGACCCAATTCAATTCAGTGGGATCTTTCATTCACAT
1 CAGAATTCTCACTATTTCTTAGATTCATGGACCCAATTCAATTCAGTGGGATCTTTCATTCACAT
288260 TTTTTTCCACCAAGAACGTTTTATAAAACTCTTTGACCCCCGAATTTGGAGTATCCTACTTT
66 TTTTTTCCACCAAGAACGTTTTATAAAACTCTTTGACCCCCGAATTTGGAGTATCCTACTTT
288322 CA
1 CA
288324 CGCAATTCAC
Statistics
Matches: 129, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 129 1.00
ACGTcount: A:0.27, C:0.24, G:0.12, T:0.38
Consensus pattern (127 bp):
CAGAATTCTCACTATTTCTTAGATTCATGGACCCAATTCAATTCAGTGGGATCTTTCATTCACAT
TTTTTTCCACCAAGAACGTTTTATAAAACTCTTTGACCCCCGAATTTGGAGTATCCTACTTT
Left flanking sequence: Indices 287568 -- 288067
TATTACCTTGACACCAAGTTCGACCCAATGCTTTATTTCTGTCCTAGTTGATCCTGATTCCACAT
TATAAGTATATTGATTTTTCCCCAATAACCGAATACTTTTGTCTGTAAATACTGCATATTTGATT
CCATCCATTTTCTTCCTTATGAGTTCGAGTCTCAATAAGAATGCTAGTTCTTACTGTTCATATGT
TATGATATGAATATACCACACCAATTCGTTATGTATGGATGATGAGATTCCATTGATACAGAGCC
AATTCCAATAGACTTATTGGATTGGAGGGTCCGATTGGCGTGCATCCAGTAGGAATTGAACCTAC
GAATTCGCCAATTATGAGTTGGGCGCTTTCACCATTCAGCCATGGATGCTTAGCGGGGATCCTCG
TACATGGTGAATAACCAAATTCCAATTGAAATGAAATCTTTAGGGCAATTTAGGAGGAATCAATG
AAAGGACATCAATTCAAATCCTGGATTTTCGAATTGAGAGAGATC
Right flanking sequence: Indices 288324 -- 288823
CGCAATTCACAGGGTTCAACAAGCAATCGATATTTCACGATCAAGGGTGTAGTACTCTTTGTAGT
AGCGGTCCTTATATATCGTATTAAAACTCTTTGACCCCCGAATTTGGAGTATCCTACTTTCACGC
AATTCACAGGGTTCAACAAGCAATCGATATTTCACGATCAAGGGTGTAGTACTCTTTGTAGTAGC
GGTCCTTATATATCGTATTTTCAATTTGAATATGGTCGAAAGAAAAAATCTCTGTAGGCTATTGG
CTTCTTCCTATATCCCTGTTCGGGCATAGTATAGTGCAGTCGAAGAACGCCGGATCTATTAAATT
AATAGGGGGCGAGCCAGCTTCAAGCTATAGCGCGCTAACGCCTTCTATTGATTGGCGCGTTAACC
CGCACGATTACTACGTTTTTAAGTTGTGCTGCTACAACCTTCCTACTGTGCCGGGTTGCATGCTG
GAAGGGTTTTTAATGCGGTTGCCGATCTGTTCCATTCCATCTGCA
Found at i:288414 original size:127 final size:127
Alignment explanation
Indices: 288283--288537 Score: 510
Period size: 127 Copynumber: 2.0 Consensus size: 127
288273 GAACGTTTTA
288283 TAAAACTCTTTGACCCCCGAATTTGGAGTATCCTACTTTCACGCAATTCACAGGGTTCAACAAGC
1 TAAAACTCTTTGACCCCCGAATTTGGAGTATCCTACTTTCACGCAATTCACAGGGTTCAACAAGC
288348 AATCGATATTTCACGATCAAGGGTGTAGTACTCTTTGTAGTAGCGGTCCTTATATATCGTAT
66 AATCGATATTTCACGATCAAGGGTGTAGTACTCTTTGTAGTAGCGGTCCTTATATATCGTAT
288410 TAAAACTCTTTGACCCCCGAATTTGGAGTATCCTACTTTCACGCAATTCACAGGGTTCAACAAGC
1 TAAAACTCTTTGACCCCCGAATTTGGAGTATCCTACTTTCACGCAATTCACAGGGTTCAACAAGC
288475 AATCGATATTTCACGATCAAGGGTGTAGTACTCTTTGTAGTAGCGGTCCTTATATATCGTAT
66 AATCGATATTTCACGATCAAGGGTGTAGTACTCTTTGTAGTAGCGGTCCTTATATATCGTAT
288537 T
1 T
288538 TTCAATTTGA
Statistics
Matches: 128, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 128 1.00
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (127 bp):
TAAAACTCTTTGACCCCCGAATTTGGAGTATCCTACTTTCACGCAATTCACAGGGTTCAACAAGC
AATCGATATTTCACGATCAAGGGTGTAGTACTCTTTGTAGTAGCGGTCCTTATATATCGTAT
Left flanking sequence: Indices 287783 -- 288282
CCAATTCGTTATGTATGGATGATGAGATTCCATTGATACAGAGCCAATTCCAATAGACTTATTGG
ATTGGAGGGTCCGATTGGCGTGCATCCAGTAGGAATTGAACCTACGAATTCGCCAATTATGAGTT
GGGCGCTTTCACCATTCAGCCATGGATGCTTAGCGGGGATCCTCGTACATGGTGAATAACCAAAT
TCCAATTGAAATGAAATCTTTAGGGCAATTTAGGAGGAATCAATGAAAGGACATCAATTCAAATC
CTGGATTTTCGAATTGAGAGAGATCCAGAATTCTCACTATTTCTTAGATTCATGGACCCAATTCA
ATTCAGTGGGATCTTTCATTCACATTTTTTTCCACCAAGAACGTTTTATAAAACTCTTTGACCCC
CGAATTTGGAGTATCCTACTTTCAGAATTCTCACTATTTCTTAGATTCATGGACCCAATTCAATT
CAGTGGGATCTTTCATTCACATTTTTTTCCACCAAGAACGTTTTA
Right flanking sequence: Indices 288538 -- 289037
TTCAATTTGAATATGGTCGAAAGAAAAAATCTCTGTAGGCTATTGGCTTCTTCCTATATCCCTGT
TCGGGCATAGTATAGTGCAGTCGAAGAACGCCGGATCTATTAAATTAATAGGGGGCGAGCCAGCT
TCAAGCTATAGCGCGCTAACGCCTTCTATTGATTGGCGCGTTAACCCGCACGATTACTACGTTTT
TAAGTTGTGCTGCTACAACCTTCCTACTGTGCCGGGTTGCATGCTGGAAGGGTTTTTAATGCGGT
TGCCGATCTGTTCCATTCCATCTGCATCCGGTGCTAAATTATCCATTCCTTAACTAGAAAGGTTT
GAATCAGAATAGAATCGTGGTGGACAGCGCTTCCGCAAATACCAGTTTCAATTCCTATTAACTAA
GTAAGAAAATAAATTAATCTATTCACAACACGCCTTCTGGTTCTTTGGCTGGCCCCTCCCCTTCT
TTAGACATGAAGCTTTACTGCAAGTCTACCTTGCATCTTGGGGGT
Found at i:298033 original size:14 final size:14
Alignment explanation
Indices: 298014--298041 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
298004 GAATAAGGTC
298014 ACTATTCATAGAGT
1 ACTATTCATAGAGT
298028 ACTATTCATAGAGT
1 ACTATTCATAGAGT
298042 CAAGTAAGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (14 bp):
ACTATTCATAGAGT
Left flanking sequence: Indices 297514 -- 298013
ATAAAGAACTTAACTTCAGGTCGAAGAGAAGAAATTAGACACAGAGGGAGGAAAAAGAGGGGGGC
ATGAAGCGAGTAGCTCTTTCGTGATAGAATTCCTCTTCTTGTTGACCCTAATGGTGTGACCTTGG
TTTCATCCCTTTGGCAAATCAAGCCATTTCTTTGGAAGGGTAGCGAAGGGACTTCCCCTCATCTA
TAAAGGAGAGGCTTTATTGAGAGAATAGGGGCGGTAAGCATTTGCAATAGTAGGTATTCCCCCAG
GGGGCTGGGCTGTTAGCGCGACTTGTTAGAGTTGTTTGTTGTTCTTCCCCGTGGGCTGGACTGTT
AGCGCGACTTGTTAGACTCCTCTTGCTGCTGAAAAGCCGTTGCTTGCACCTGAAAGCCTACCAGA
AACAAGCGAGTCTCCTCGCTTAAGGCATATAGCTGCGCTAGTCCGCCCTATTTTGGTTGTTCGAA
GCAAGGATAGCGACTAGTAAGACAGAAAAGAGGAGGAATAAGGTC
Right flanking sequence: Indices 298042 -- 298541
CAAGTAAGAAAGGAAAAGAAAGGTCTTTAGTTACAGTAGTCTGCCAGCCAGTAGTACCAGTAGTC
AGAAAGCCGAAAGCCACCCTTTTTGTAACTTGGTAAGGGTATTGCCAACTATTAGCCAAGTAAGA
GAGGGAATCCCGTGGTGGGATTTCTTACCGGCTGGCTAACCAGACAACTAGTCAATAGAAGAGGT
ATTCTCCCCTTTGCTAGCTTTACGTCCTCTTTAACATGGAGCAATACTACTATAAGGTAGAGAAC
TACGAATATTTAAATAAAAAGATTCTTTTCTATTATATACATATTTATTAGTTGTAGCTTACCGT
TCGAACGTGACCTCTTTTTTGTGCTATTGCTCAGCTAGCTCTCACTATCGGTTTATTACGTTATC
CCCGCTCTACTGGTTGTTCGGCTAGTGTTAGTCTTCTCTATGCCGTCCTCCACCCTATATTAGTA
TACGGTTAGGTAGGGAACATTCTTTCCTATCTTTATTATTCCACC
Found at i:311064 original size:127 final size:127
Alignment explanation
Indices: 310838--311091 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
310828 TCGGACCTAG
310838 TCATACTATTACATTATATTGACAATTTCAAAAAACTGTTCATACTCTGAGTATAGTATGATGGC
1 TCATACTATTACATTATATTGACAATTTCAAAAAACTGTTCATACTCTGAGTATAGTATGATGGC
310903 GGTCGGGCAAGTATGCCCCCATCGTCTAGTGGTTCAGGACATCTCTCTTTCAAGGAGGCAGC
66 GGTCGGGCAAGTATGCCCCCATCGTCTAGTGGTTCAGGACATCTCTCTTTCAAGGAGGCAGC
310965 TCATACTATTACATTATATTGACAATTTCAAAAAACTGTTCATACTCTGAGTATAGTATGATGGC
1 TCATACTATTACATTATATTGACAATTTCAAAAAACTGTTCATACTCTGAGTATAGTATGATGGC
311030 GGTCGGGCAAGTATGCCCCCATCGTCTAGTGGTTCAGGACATCTCTCTTTCAAGGAGGCAGC
66 GGTCGGGCAAGTATGCCCCCATCGTCTAGTGGTTCAGGACATCTCTCTTTCAAGGAGGCAGC
311092 GGGGATTCGA
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (127 bp):
TCATACTATTACATTATATTGACAATTTCAAAAAACTGTTCATACTCTGAGTATAGTATGATGGC
GGTCGGGCAAGTATGCCCCCATCGTCTAGTGGTTCAGGACATCTCTCTTTCAAGGAGGCAGC
Left flanking sequence: Indices 310338 -- 310837
ATAGAATAGAGGAAATTTAATGCTTGTTTGAGACGCCCTATCCATTGGTCCTGCTGATCTTATGT
GATTCCCTATTCAATTTGTCGATTTTATTCTTCATAAAGATTGAAGGTTTCTAAAAGAACTACAT
TGGGCTTGATTCTGGCTCAGTTAAGCTGTTATATGTAGGCAAGTCCTCTTTAGAAAGAAGTTGAG
GGCCCCAGCCCAGCAAGTAAGCATGAAGTGAAGATGAAGTCGATCAGGAGAATATTTTTTTGGGT
TTTAGTGCGTTCGGATTAAGGAGTGTGAGATTTTTGGTATTTTTTGTTTTTGTTTTGGCGGACAA
ATCACTCCCCGAAAGGATCCTTCGTATTATTATTATTATTTAGTTATATATAATATATAGATTGA
TATATTATATATAACTAAAATGGAATGTATAAAATGACGATTAGAATGAATGATTCATGAATGAC
GAATCATAAAATTCTATGGAATCATGAAAGATTCTTCGGACCTAG
Right flanking sequence: Indices 311092 -- 311591
GGGGATTCGACTTCCCCTGGGGGTAGGGTACTACGAAAGGAAGTTGATCATGGATTATCAATAAG
CCTAAATTTTATTTTTTCCCGGGTCGATGCTCGAGTGGTTAATGGGGACGGACTGTAAATTCGTT
GGCAATATGTCTACGCTGGTTCAAATCCAGCTCGGCCCAATAATTCGCCGATTATCAATAAGCCT
AAATTTTATTTTTTCCCGGGTCGATGCTCGAGTGGTTAATGGGGACGGACTGTAAATTCGTTGGC
AATATGTCTACGCTGGTTCAAATCCAGCTCGGCCCAATAATTCGCCAATCCATCATGAGATAATA
TAATCCATTTGTCCTCAGAAATGCTTGATACAGAGAAATCAAAAAGGAGTCCAATTTTCTGCTAT
ATCCCTACCTCTATTTATTTATATTTTATATAATATTATATTTTGTTCCCACTCCGATCTTGCTA
ATGAATGATCTAGATTCATATCGGGATCTGTAAGTATAAAGTCTA
Found at i:311370 original size:127 final size:127
Alignment explanation
Indices: 311144--311397 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
311134 GTTGATCATG
311144 GATTATCAATAAGCCTAAATTTTATTTTTTCCCGGGTCGATGCTCGAGTGGTTAATGGGGACGGA
1 GATTATCAATAAGCCTAAATTTTATTTTTTCCCGGGTCGATGCTCGAGTGGTTAATGGGGACGGA
311209 CTGTAAATTCGTTGGCAATATGTCTACGCTGGTTCAAATCCAGCTCGGCCCAATAATTCGCC
66 CTGTAAATTCGTTGGCAATATGTCTACGCTGGTTCAAATCCAGCTCGGCCCAATAATTCGCC
311271 GATTATCAATAAGCCTAAATTTTATTTTTTCCCGGGTCGATGCTCGAGTGGTTAATGGGGACGGA
1 GATTATCAATAAGCCTAAATTTTATTTTTTCCCGGGTCGATGCTCGAGTGGTTAATGGGGACGGA
311336 CTGTAAATTCGTTGGCAATATGTCTACGCTGGTTCAAATCCAGCTCGGCCCAATAATTCGCC
66 CTGTAAATTCGTTGGCAATATGTCTACGCTGGTTCAAATCCAGCTCGGCCCAATAATTCGCC
311398 AATCCATCAT
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.31
Consensus pattern (127 bp):
GATTATCAATAAGCCTAAATTTTATTTTTTCCCGGGTCGATGCTCGAGTGGTTAATGGGGACGGA
CTGTAAATTCGTTGGCAATATGTCTACGCTGGTTCAAATCCAGCTCGGCCCAATAATTCGCC
Left flanking sequence: Indices 310644 -- 311143
TTTTTGTTTTGGCGGACAAATCACTCCCCGAAAGGATCCTTCGTATTATTATTATTATTTAGTTA
TATATAATATATAGATTGATATATTATATATAACTAAAATGGAATGTATAAAATGACGATTAGAA
TGAATGATTCATGAATGACGAATCATAAAATTCTATGGAATCATGAAAGATTCTTCGGACCTAGT
CATACTATTACATTATATTGACAATTTCAAAAAACTGTTCATACTCTGAGTATAGTATGATGGCG
GTCGGGCAAGTATGCCCCCATCGTCTAGTGGTTCAGGACATCTCTCTTTCAAGGAGGCAGCTCAT
ACTATTACATTATATTGACAATTTCAAAAAACTGTTCATACTCTGAGTATAGTATGATGGCGGTC
GGGCAAGTATGCCCCCATCGTCTAGTGGTTCAGGACATCTCTCTTTCAAGGAGGCAGCGGGGATT
CGACTTCCCCTGGGGGTAGGGTACTACGAAAGGAAGTTGATCATG
Right flanking sequence: Indices 311398 -- 311897
AATCCATCATGAGATAATATAATCCATTTGTCCTCAGAAATGCTTGATACAGAGAAATCAAAAAG
GAGTCCAATTTTCTGCTATATCCCTACCTCTATTTATTTATATTTTATATAATATTATATTTTGT
TCCCACTCCGATCTTGCTAATGAATGATCTAGATTCATATCGGGATCTGTAAGTATAAAGTCTAA
GGGTAAAGAAATAAAATTATTTTTTTTTCATTGAAAGATTGATTATTAATCGATTTGGCAATAAC
GAAAGGATTACTTTACTAGTAATCCCTGTCCCTCTCACTAAAGTGCATATTCATGTGGATATCAA
TATATCACTCGCGTCTCTCTTATATATAACATGACGATTCTAAATCGAAATGGTTTGAATGAAAT
CATAAGAATATGTATGCTGTACGCCTTATTTCTTTGGGATTGTAGTTCAATTGGTCAGAGCACCG
CCCTGTCAAGGCGGAAGCTGCGGGTTCGAGCCCCGTCAGTCCCGA
Found at i:331747 original size:19 final size:19
Alignment explanation
Indices: 331723--331760 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
331713 CCTAGCCAGA
331723 GAAAAGAAAGATTTGAATT
1 GAAAAGAAAGATTTGAATT
*
331742 GAAAAGACAGATTTGAATT
1 GAAAAGAAAGATTTGAATT
331761 CGATGGGGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.50, C:0.03, G:0.21, T:0.26
Consensus pattern (19 bp):
GAAAAGAAAGATTTGAATT
Left flanking sequence: Indices 331223 -- 331722
GAAAGTTCCGTGGAGTTCATAATTGCATAAAAGGAGTCAAAGTAGTGGCTGCGGCGCGTCGAGGC
ACTTCTTCGCATGGTAAGCAAGTATAATGCCTCCTTCCTTCCTACGCAAAGAATGCTTGGCCTCC
TTATAGTCGGGTTAAGCTCCGATTTCATGCTGTCCCGGTCGTATTTTGCCGGAGTCCAGCCCGGT
CACCGAGGTCACATTGATCTCATACTTAAAGGTGATTTAGTTCCCCCTGGATCCATTCCTAAAGT
TCCTGAGCAATTCATGTCGCCATTGACCTTGAGATTAAGCCCAAGGTCGAGTCGTCCGCATATCT
GACTATGGAAAGAACCATAGTGCTCGCACAGCACAAAAGAGGGAGATGTTGAGATCCGGGCTTGA
GCTGGACATGCGCTGCCATTCCGGTCCGGCTCTAGATGTTCAACACAGTGCCAGGTTGCTCGTCT
GTCTGATGGAATTCCGTAGAGAAGAAAGATCATAGCCTAGCCAGA
Right flanking sequence: Indices 331761 -- 332260
CGATGGGGATAAATGATGATGGAATAAAGGTAAGGGCAGGAAGGGCGCTTCGCCGCCATGAAAGC
AGAATCCCTATACTGAAGCCGATTCGTCGACATGAAACTGAATGCCATCAAAAGGAGGAGAATCC
GATTTGCCTCCATTAGCATCAGCAGAACGGCATATACTATTTCCATCAAGCCGATCTAGAATCCC
CTCTTCGGACCAATCACTTCACTTCTTAATTAGCCCGAGGGCTAACCTATCATTAGCAGATGTCA
CTATGCTTAAGACATGCAAGTCGGACTCTTTCCCGCAGATAAGATACGAAGTCCTTGAAGACCAA
GCCAATCTCGATGATAAAAGAAGCAGAACAGAGCGGCGAAGGTAAGTTACTTCTTGACCATAAGG
TGTTATAGAAGAAGGTCTTACTTCATCCGCTGCTTGAGACTAGGCTGCTATTGAATCCAAGTGTG
TCGGTTCGGTTGTTACAGAACATGAATCTGACATATAGAAACTCC
Found at i:335256 original size:127 final size:127
Alignment explanation
Indices: 335030--335283 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
335020 TTTGAAGGCT
335030 CTCGCTTTGCCCGTTAAGAGTAGGTAACCCGTTCCCTGTCTTTGTTTCTATTGCATTCTATTTCA
1 CTCGCTTTGCCCGTTAAGAGTAGGTAACCCGTTCCCTGTCTTTGTTTCTATTGCATTCTATTTCA
335095 TCGTATCACATTCTGTTTTGCGATATTTGAGAATCACCGTCAATACCTCGGTGTAGGTCCGG
66 TCGTATCACATTCTGTTTTGCGATATTTGAGAATCACCGTCAATACCTCGGTGTAGGTCCGG
335157 CTCGCTTTGCCCGTTAAGAGTAGGTAACCCGTTCCCTGTCTTTGTTTCTATTGCATTCTATTTCA
1 CTCGCTTTGCCCGTTAAGAGTAGGTAACCCGTTCCCTGTCTTTGTTTCTATTGCATTCTATTTCA
335222 TCGTATCACATTCTGTTTTGCGATATTTGAGAATCACCGTCAATACCTCGGTGTAGGTCCGG
66 TCGTATCACATTCTGTTTTGCGATATTTGAGAATCACCGTCAATACCTCGGTGTAGGTCCGG
335284 GATAATCCTT
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.18, C:0.24, G:0.20, T:0.38
Consensus pattern (127 bp):
CTCGCTTTGCCCGTTAAGAGTAGGTAACCCGTTCCCTGTCTTTGTTTCTATTGCATTCTATTTCA
TCGTATCACATTCTGTTTTGCGATATTTGAGAATCACCGTCAATACCTCGGTGTAGGTCCGG
Left flanking sequence: Indices 334530 -- 335029
GTCAAGAGAACAGCATCTTTTATGTTATGTCTTCTTCCGTTGGAGGTGAACTTAGCATCTCATTT
TCCTCAATAGTAACAAGGCTTGGGATGTCTTGTAAGATGCTATTATCAATGGAGTTGGTTTCATA
AGATAAAACTGACTCAAAAAACTTCCAACCAGCATCTCCAATTGCATCTTAGTCTTCGACCCATC
TTCTAGCTTGATTTTCCCGATCATCTGTCTTCTATGATTATCTTTAGCAACAGTGTGAAAGAACT
TAGTGTTCTTATCACCTTCCTGGAGCCACTGAACTCTTTCTTTCTGTTTCCAGAAAGTTTCCTCC
ATGCAAAGCAATCTGTCAAAATCTTCTCGAGCAGCAGTTAAAGAGAAGGTACGATCGAGACTTCC
ATTCCAAACTGATCATACATATTCACAATAGCTATCCGTCAATTGACTTTATACTCTTTTGCTTG
AATGAGATTGTGCAGCCACTGCCATTCTCCTTTTTTTTGAAGGCT
Right flanking sequence: Indices 335284 -- 335783
GATAATCCTTTGTTCCATAGTCCTAGGGCTATTTACAACTAGCCAATTAAGAATTCTCCGATGTA
CTAGTACTAGCAGTGCATCAAAGATGCAGTCATCGATTCTCCCGAGAGGCCGCAATTACCGCGAG
CAAGCATATTAATGACGAAGGACGCATTTTTTATACTAATACTTGTACTTGCTCCGCTATTCAGC
CCAAGCCTGGCTGAGGAAGAGTTACGAGGCGTAAAACAAAAAAAATATGCGGATTGGCCCGTGCA
TACTATATGGAATATAATGATTCCATCATTCACGATAAGATCAATAATAAGATAAATAAGAAATA
AAAAGAAAAAAAGTAAGGCCATTCCATTTCCCATTTCGACAAAAGACCCATACCCAAGTTCCATA
GCTTCGGGTCCGCTATCCCGATCATGATTTTCCTACCCCCAGAGGGAAAGGTCCTTCCCCTTTAG
GCCGGTTGTGGGCGAGGAGGGATTCGAACCCCCGACACCGTGGTT
Found at i:335968 original size:127 final size:127
Alignment explanation
Indices: 335742--335995 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
335732 CCTTTAGGCC
335742 GGTTGTGGGCGAGGAGGGATTCGAACCCCCGACACCGTGGTTCGTAGCCACGTGCTCTAATCCTC
1 GGTTGTGGGCGAGGAGGGATTCGAACCCCCGACACCGTGGTTCGTAGCCACGTGCTCTAATCCTC
335807 TGAGCTACAGGCCCCCACCCCGTCTCCACTGGATCTGTTCCGGGGAGTACCCTCAAAAAAAA
66 TGAGCTACAGGCCCCCACCCCGTCTCCACTGGATCTGTTCCGGGGAGTACCCTCAAAAAAAA
335869 GGTTGTGGGCGAGGAGGGATTCGAACCCCCGACACCGTGGTTCGTAGCCACGTGCTCTAATCCTC
1 GGTTGTGGGCGAGGAGGGATTCGAACCCCCGACACCGTGGTTCGTAGCCACGTGCTCTAATCCTC
335934 TGAGCTACAGGCCCCCACCCCGTCTCCACTGGATCTGTTCCGGGGAGTACCCTCAAAAAAAA
66 TGAGCTACAGGCCCCCACCCCGTCTCCACTGGATCTGTTCCGGGGAGTACCCTCAAAAAAAA
335996 ATAACCTTTC
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.21, C:0.32, G:0.27, T:0.20
Consensus pattern (127 bp):
GGTTGTGGGCGAGGAGGGATTCGAACCCCCGACACCGTGGTTCGTAGCCACGTGCTCTAATCCTC
TGAGCTACAGGCCCCCACCCCGTCTCCACTGGATCTGTTCCGGGGAGTACCCTCAAAAAAAA
Left flanking sequence: Indices 335242 -- 335741
CGATATTTGAGAATCACCGTCAATACCTCGGTGTAGGTCCGGGATAATCCTTTGTTCCATAGTCC
TAGGGCTATTTACAACTAGCCAATTAAGAATTCTCCGATGTACTAGTACTAGCAGTGCATCAAAG
ATGCAGTCATCGATTCTCCCGAGAGGCCGCAATTACCGCGAGCAAGCATATTAATGACGAAGGAC
GCATTTTTTATACTAATACTTGTACTTGCTCCGCTATTCAGCCCAAGCCTGGCTGAGGAAGAGTT
ACGAGGCGTAAAACAAAAAAAATATGCGGATTGGCCCGTGCATACTATATGGAATATAATGATTC
CATCATTCACGATAAGATCAATAATAAGATAAATAAGAAATAAAAAGAAAAAAAGTAAGGCCATT
CCATTTCCCATTTCGACAAAAGACCCATACCCAAGTTCCATAGCTTCGGGTCCGCTATCCCGATC
ATGATTTTCCTACCCCCAGAGGGAAAGGTCCTTCCCCTTTAGGCC
Right flanking sequence: Indices 335996 -- 336495
ATAACCTTTCCTCTCCCCAGCCATTTCGGGTTAAGAAGATGTGAAAGCGCGTTTCTCTCTATAAG
AACGGTGCCCCCCGAGATGTGAAGTGGGAGAGAAGGGATGTAATAATTATAATTGGGGTTTTGAG
TAAGACGACCTTTTCATTTTTTTTCTTTTTTATATTGAAAAAGTAATAAGAATGAGAGGTGTTAA
GCTTTTTATCATCCTGGCGTCGAGCTATTTTTCCGCAGGACCCCCCCTACAGTATCGTCACCGCA
GTAGAGTTTAACCACCACGGGATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCAGAATATCG
AACCATGAACGAAGAAAGACATGAGAGAAAAGCATATTATATTGGCTAGTAATTGTGAGGCCCCA
ATTCTTGACTGGAGGGGACACCAAAGGCCTCTGCCCTCCCTCTCTATCTATCCAAGGGGACAGAG
CTTTTGGTTTTTTCATGTTGTCAAAGAGTTGAACAATGAAAATAG
Found at i:336669 original size:127 final size:127
Alignment explanation
Indices: 336443--336696 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
336433 CTATCCAAGG
336443 GGACAGAGCTTTTGGTTTTTTCATGTTGTCAAAGAGTTGAACAATGAAAATAGATGGCGAGTGCC
1 GGACAGAGCTTTTGGTTTTTTCATGTTGTCAAAGAGTTGAACAATGAAAATAGATGGCGAGTGCC
336508 TAATCGAATTGATCGGGTCATGTAGGAACAAGGTTCAAGTCTACCGGTCTGTTAGGATGCCT
66 TAATCGAATTGATCGGGTCATGTAGGAACAAGGTTCAAGTCTACCGGTCTGTTAGGATGCCT
336570 GGACAGAGCTTTTGGTTTTTTCATGTTGTCAAAGAGTTGAACAATGAAAATAGATGGCGAGTGCC
1 GGACAGAGCTTTTGGTTTTTTCATGTTGTCAAAGAGTTGAACAATGAAAATAGATGGCGAGTGCC
336635 TAATCGAATTGATCGGGTCATGTAGGAACAAGGTTCAAGTCTACCGGTCTGTTAGGATGCCT
66 TAATCGAATTGATCGGGTCATGTAGGAACAAGGTTCAAGTCTACCGGTCTGTTAGGATGCCT
336697 CAGCTGCATA
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (127 bp):
GGACAGAGCTTTTGGTTTTTTCATGTTGTCAAAGAGTTGAACAATGAAAATAGATGGCGAGTGCC
TAATCGAATTGATCGGGTCATGTAGGAACAAGGTTCAAGTCTACCGGTCTGTTAGGATGCCT
Left flanking sequence: Indices 335943 -- 336442
GGCCCCCACCCCGTCTCCACTGGATCTGTTCCGGGGAGTACCCTCAAAAAAAAATAACCTTTCCT
CTCCCCAGCCATTTCGGGTTAAGAAGATGTGAAAGCGCGTTTCTCTCTATAAGAACGGTGCCCCC
CGAGATGTGAAGTGGGAGAGAAGGGATGTAATAATTATAATTGGGGTTTTGAGTAAGACGACCTT
TTCATTTTTTTTCTTTTTTATATTGAAAAAGTAATAAGAATGAGAGGTGTTAAGCTTTTTATCAT
CCTGGCGTCGAGCTATTTTTCCGCAGGACCCCCCCTACAGTATCGTCACCGCAGTAGAGTTTAAC
CACCACGGGATGGATTGGTGTGGTTCCTCTACGCCTAGGACACCAGAATATCGAACCATGAACGA
AGAAAGACATGAGAGAAAAGCATATTATATTGGCTAGTAATTGTGAGGCCCCAATTCTTGACTGG
AGGGGACACCAAAGGCCTCTGCCCTCCCTCTCTATCTATCCAAGG
Right flanking sequence: Indices 336697 -- 337196
CAGCTGCATACATCACTGCACTTCCACTTGACACCTATCGTAATGATAAACGGCTCGTCTCGCCG
TGACCTTCTCTTGAATTCTCAAAACTTCTGTCGCTCCATCCCCGCAGGGGCAGAGAACCCGTCGC
TGTCTCGGCTGTGCTACCGGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGTGG
GCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTTCGCACTTGGCTACCCAGCGTTTACCGTGG
GCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTCCTCT
CAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCAC
GTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACAGCCCCAGGTGGCGAAGAGC
CGACATCGAGGTGCCAAACCTTCCCGTCGATGTGAGCTCTTGGGG
Found at i:338145 original size:127 final size:127
Alignment explanation
Indices: 337963--338217 Score: 510
Period size: 127 Copynumber: 2.0 Consensus size: 127
337953 ACGGGGCTAT
337963 TTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGT
1 TTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGT
338028 CGGTTTCGGGTACAGGTACCCTTTTGTTGAAGGTCGTTCGAGCTTTTCCTGGGAGTATGGCA
66 CGGTTTCGGGTACAGGTACCCTTTTGTTGAAGGTCGTTCGAGCTTTTCCTGGGAGTATGGCA
338090 TTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGT
1 TTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGT
338155 CGGTTTCGGGTACAGGTACCCTTTTGTTGAAGGTCGTTCGAGCTTTTCCTGGGAGTATGGCA
66 CGGTTTCGGGTACAGGTACCCTTTTGTTGAAGGTCGTTCGAGCTTTTCCTGGGAGTATGGCA
338217 T
1 T
338218 GGGTTACTTC
Statistics
Matches: 128, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 128 1.00
ACGTcount: A:0.15, C:0.25, G:0.27, T:0.33
Consensus pattern (127 bp):
TTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGT
CGGTTTCGGGTACAGGTACCCTTTTGTTGAAGGTCGTTCGAGCTTTTCCTGGGAGTATGGCA
Left flanking sequence: Indices 337463 -- 337962
GTTAGAATTCTAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCGGAAGGGGGCC
TTCTTCGCCCTCCACCTAAGCTGCGCAGGAAAGGCCCAAAGCCAATCCCAGGGAACAGTGAAGCT
TCGTAGGGTCTTTCTGTCCAGGTGCAGGGAATCCGCATCTTCACAGACATGTCTATTTCACCGAG
CCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGG
AATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGAGCTTCGGTCGCCGGCTC
CCCTGTCATCAGGTCACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACAT
GGTCTTACGACTTTGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGAC
CCCCTTTGTGAGGAGGCACCCCTTCTCCCGAAGTTACGGGGCTAT
Right flanking sequence: Indices 338218 -- 338717
GGGTTACTTCAGCGCCGTAGCGCCTGGTACTCGAACATTGGCTCGAGGCATTTTCTCTACCCCTT
CTTACCCTGAAAAAGCAGGGTCACCTTGCGTCCTTGAACCGATAACCGTCTTTCGGCTAACCTAG
CCTCCTCCGTCCCTCGGGACCAACAAGGGGTAGCACAGGAATATTCACCTGTTGTCCATCGACTA
CGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCGGAGGAACCCTT
AGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCGACATTCTCGCTTCCGC
TTCGTCCACCGCTGCTCGCGCAGGTGCTTCTCTCTAAGGCGGAACGCTCCCCTACCGATGCATTT
TTACATCCCACAGCTTCGGCAGATCGCTTAGCCCCGTTCATCTTCGGCGCAAGAGCGCTCGATCA
GTGAGCTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAA
Found at i:339138 original size:127 final size:127
Alignment explanation
Indices: 338912--339166 Score: 510
Period size: 127 Copynumber: 2.0 Consensus size: 127
338902 CCGCTCTCGC
338912 GGCCCGCACCGAAACAGTGCTTTACCCCTAGATGTCCAGTCAACTGCTGCGCCTCAACGCATTTC
1 GGCCCGCACCGAAACAGTGCTTTACCCCTAGATGTCCAGTCAACTGCTGCGCCTCAACGCATTTC
338977 GGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCACCCCTAACCACAACTCATCCGCT
66 GGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCACCCCTAACCACAACTCATCCGCT
339039 GGCCCGCACCGAAACAGTGCTTTACCCCTAGATGTCCAGTCAACTGCTGCGCCTCAACGCATTTC
1 GGCCCGCACCGAAACAGTGCTTTACCCCTAGATGTCCAGTCAACTGCTGCGCCTCAACGCATTTC
339104 GGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCACCCCTAACCACAACTCATCCGCT
66 GGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCACCCCTAACCACAACTCATCCGCT
339166 G
1 G
339167 ATTCTTCAAC
Statistics
Matches: 128, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 128 1.00
ACGTcount: A:0.22, C:0.35, G:0.22, T:0.21
Consensus pattern (127 bp):
GGCCCGCACCGAAACAGTGCTTTACCCCTAGATGTCCAGTCAACTGCTGCGCCTCAACGCATTTC
GGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCACCCCTAACCACAACTCATCCGCT
Left flanking sequence: Indices 338412 -- 338911
ACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCGGAGGAACCCT
TAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCGACATTCTCGCTTCCG
CTTCGTCCACCGCTGCTCGCGCAGGTGCTTCTCTCTAAGGCGGAACGCTCCCCTACCGATGCATT
TTTACATCCCACAGCTTCGGCAGATCGCTTAGCCCCGTTCATCTTCGGCGCAAGAGCGCTCGATC
AGTGAGCTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCA
CCCCTACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCC
TCTCGACGATGAAGCTTATCCCCCATCGTCTCACTGGCCGACCTTGACCCCTGTTATTTTGAGGT
CATATCTAGTATTCAGAGTTTGCCTCGATTTGGTACCGCTCTCGC
Right flanking sequence: Indices 339167 -- 339666
ATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGTTTCACCCAAGCTTCATCCTGGTCATGGA
TAGATCACCCAGGTTCGGGTCCATAAGCAGTGACAATTGCCCTATGAAGACTCGCTTTCGCTACG
GCTCCGGTGGGTTCCCTTAACCAAGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCAC
GCGGTCAGAGCCCTGGGCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCC
CCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATT
TAGCCTTGCAAGGTGGTCCTTGCGGATTCACACGGGATTCCACGTGCCCCATGCTACTCGGGTCA
GAGCGTAAGCTAGTGTGCTTTCGGCTACTGGACTCTCGCCATCTAGGGTGCAGCACTCCACCGCT
TCGCCTAGCAGCACGACGCTTGGATTGCTCTCCCACAACCCCGTT
Found at i:340049 original size:127 final size:127
Alignment explanation
Indices: 339823--340076 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
339813 ATTCGGGAAT
339823 CTCCGGATCTATGCTTATTTTCAACTCCCCGAAGCATTTCGTCGCTTACTACGCCCTTCCTCGTC
1 CTCCGGATCTATGCTTATTTTCAACTCCCCGAAGCATTTCGTCGCTTACTACGCCCTTCCTCGTC
339888 TCTGGGTGCCTAGGTATCCACCGTAAGCCTTTCCTCGTTTGAACCTCGCCCTTAACTTTTTA
66 TCTGGGTGCCTAGGTATCCACCGTAAGCCTTTCCTCGTTTGAACCTCGCCCTTAACTTTTTA
339950 CTCCGGATCTATGCTTATTTTCAACTCCCCGAAGCATTTCGTCGCTTACTACGCCCTTCCTCGTC
1 CTCCGGATCTATGCTTATTTTCAACTCCCCGAAGCATTTCGTCGCTTACTACGCCCTTCCTCGTC
340015 TCTGGGTGCCTAGGTATCCACCGTAAGCCTTTCCTCGTTTGAACCTCGCCCTTAACTTTTTA
66 TCTGGGTGCCTAGGTATCCACCGTAAGCCTTTCCTCGTTTGAACCTCGCCCTTAACTTTTTA
340077 TTTGAAGGCT
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.16, C:0.34, G:0.16, T:0.35
Consensus pattern (127 bp):
CTCCGGATCTATGCTTATTTTCAACTCCCCGAAGCATTTCGTCGCTTACTACGCCCTTCCTCGTC
TCTGGGTGCCTAGGTATCCACCGTAAGCCTTTCCTCGTTTGAACCTCGCCCTTAACTTTTTA
Left flanking sequence: Indices 339323 -- 339822
CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGCCCTGGGCTCCTCCCA
CTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGATGGGGGTTCTTTTCACCCTTCC
CTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCGGA
TTCACACGGGATTCCACGTGCCCCATGCTACTCGGGTCAGAGCGTAAGCTAGTGTGCTTTCGGCT
ACTGGACTCTCGCCATCTAGGGTGCAGCACTCCACCGCTTCGCCTAGCAGCACGACGCTTGGATT
GCTCTCCCACAACCCCGTTTTCACGGTTTAGGCTGCTCCCATTTCGCTCGCCGCTACTACGGGAA
TCGCTTTTGCTTTCTTTTCCTCTGGCTACTAAGATGTTTCAGTTTGCCAGGTTGTCTCTTGCCTG
CCCATGGATTCAGCAGCAGTTCGAAAGGTTGACCTATTCGGGAAT
Right flanking sequence: Indices 340077 -- 340576
TTTGAAGGCTATGCTATACCCTCCTAAGGTGCTGCTAAATGGAAGGATCTTATCAACGTCCATGA
ATGAGAAATCATAGATCGAACCGCCCAATCGGAAAAATTGGGTGCTATCATATAGCTTTGTATCG
GCTAAGTTCACGAGTTGGAGATAAGCGGACTCGAACCGCTGACATCCGCCACAGGGTAAACCACC
GCCTCGACGGTCCCCGACTGATTCTACCATAGAGGCCAACGAAAGACAATAACTCCCCCCCGAAC
ACAGCTTACAACTTTCATCGTACTGTGCTCTCCAAAGAGCAACTCTTCTCAAAATCTCAAAAGGT
GCTGAGCTGGAATCCCATTCTAACTAAGGATTCTTGTGGTTCCGGAGGATCCAGCTACAGGAGAA
CCAGGAAGGGAGAGCTTTCCCCCCTTTTCCGCCCGACTCTTTCATTGGTCTTAAGAATGCTGGTT
TTAAGAATGAGTGATTGCCCTTCTCCGACCCTTATTGCCCAACCT
Found at i:340896 original size:127 final size:127
Alignment explanation
Indices: 340670--340925 Score: 512
Period size: 127 Copynumber: 2.0 Consensus size: 127
340660 GGGCGATCCC
340670 CCAGTTCCTACGGGGTGGAGACAATGGGGTCGGTCCATGGATTTTCCTTCCTTTTGCCGCATTTC
1 CCAGTTCCTACGGGGTGGAGACAATGGGGTCGGTCCATGGATTTTCCTTCCTTTTGCCGCATTTC
340735 GCTCAAAGGGTTGAAGGGAGATAGTGCATCAAGCCGTTCGCAAGGGCCAACTTGATCCTCTT
66 GCTCAAAGGGTTGAAGGGAGATAGTGCATCAAGCCGTTCGCAAGGGCCAACTTGATCCTCTT
340797 CCAGTTCCTACGGGGTGGAGACAATGGGGTCGGTCCATGGATTTTCCTTCCTTTTGCCGCATTTC
1 CCAGTTCCTACGGGGTGGAGACAATGGGGTCGGTCCATGGATTTTCCTTCCTTTTGCCGCATTTC
340862 GCTCAAAGGGTTGAAGGGAGATAGTGCATCAAGCCGTTCGCAAGGGCCAACTTGATCCTCTT
66 GCTCAAAGGGTTGAAGGGAGATAGTGCATCAAGCCGTTCGCAAGGGCCAACTTGATCCTCTT
340924 CC
1 CC
340926 CCAGGGATCC
Statistics
Matches: 129, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 129 1.00
ACGTcount: A:0.20, C:0.25, G:0.28, T:0.27
Consensus pattern (127 bp):
CCAGTTCCTACGGGGTGGAGACAATGGGGTCGGTCCATGGATTTTCCTTCCTTTTGCCGCATTTC
GCTCAAAGGGTTGAAGGGAGATAGTGCATCAAGCCGTTCGCAAGGGCCAACTTGATCCTCTT
Left flanking sequence: Indices 340170 -- 340669
TCGGAAAAATTGGGTGCTATCATATAGCTTTGTATCGGCTAAGTTCACGAGTTGGAGATAAGCGG
ACTCGAACCGCTGACATCCGCCACAGGGTAAACCACCGCCTCGACGGTCCCCGACTGATTCTACC
ATAGAGGCCAACGAAAGACAATAACTCCCCCCCGAACACAGCTTACAACTTTCATCGTACTGTGC
TCTCCAAAGAGCAACTCTTCTCAAAATCTCAAAAGGTGCTGAGCTGGAATCCCATTCTAACTAAG
GATTCTTGTGGTTCCGGAGGATCCAGCTACAGGAGAACCAGGAAGGGAGAGCTTTCCCCCCTTTT
CCGCCCGACTCTTTCATTGGTCTTAAGAATGCTGGTTTTAAGAATGAGTGATTGCCCTTCTCCGA
CCCTTATTGCCCAACCTGAGAGCGGACAGCTAATGCGTTCCACTTATTGAACAGGGTTCTATGGT
CGGTCCGTGACCCCTGGATGCCGAAGGCGTCCTTGGGGCGATCCC
Right flanking sequence: Indices 340926 -- 341425
CCAGGGATCCCAGATGAGGGAACCCTAGGAGAGCCGCCGACTCCAACTACCGTCCATGTACGATC
CATACTAGATCTGACCAACTGCCCATCCTACCTCCTCTACGTTCTTGACAGCCCATCTTTGTCTC
AGTAGAGTCTTTCGGTGGCATGTTTCGGTCCTCTTTCCCATTACTTAGAAAAAGTGAGCCACCGG
TTCAGGTACAAAATACTATCATTACCGCCTGGACAATTAGACATCCAACCCGTAATCGCAACGAC
CCAATTGCAAGAGCGGAGCTCTACCAACTGAGCTATATCCCCCCGAGCCAAGTGGAGCATGCATG
AAGGAGTCAAATGCTTCTTCTATTCTTTTACAATTAGACATCCAACCCGTAATCGCAACGACCCA
ATTGCAAGAGCGGAGCTCTACCAACTGAGCTATATCCCCCCGAGCCAAGTGGAGCATGCATGAAG
GAGTCAAATGCTTCTTCTATTCTTTTCCCTGGCGCAGCTGGGCCA
Found at i:341379 original size:127 final size:127
Alignment explanation
Indices: 341153--341406 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
341143 TACCGCCTGG
341153 ACAATTAGACATCCAACCCGTAATCGCAACGACCCAATTGCAAGAGCGGAGCTCTACCAACTGAG
1 ACAATTAGACATCCAACCCGTAATCGCAACGACCCAATTGCAAGAGCGGAGCTCTACCAACTGAG
341218 CTATATCCCCCCGAGCCAAGTGGAGCATGCATGAAGGAGTCAAATGCTTCTTCTATTCTTTT
66 CTATATCCCCCCGAGCCAAGTGGAGCATGCATGAAGGAGTCAAATGCTTCTTCTATTCTTTT
341280 ACAATTAGACATCCAACCCGTAATCGCAACGACCCAATTGCAAGAGCGGAGCTCTACCAACTGAG
1 ACAATTAGACATCCAACCCGTAATCGCAACGACCCAATTGCAAGAGCGGAGCTCTACCAACTGAG
341345 CTATATCCCCCCGAGCCAAGTGGAGCATGCATGAAGGAGTCAAATGCTTCTTCTATTCTTTT
66 CTATATCCCCCCGAGCCAAGTGGAGCATGCATGAAGGAGTCAAATGCTTCTTCTATTCTTTT
341407 CCCTGGCGCA
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (127 bp):
ACAATTAGACATCCAACCCGTAATCGCAACGACCCAATTGCAAGAGCGGAGCTCTACCAACTGAG
CTATATCCCCCCGAGCCAAGTGGAGCATGCATGAAGGAGTCAAATGCTTCTTCTATTCTTTT
Left flanking sequence: Indices 340653 -- 341152
GTCCTTGGGGCGATCCCCCAGTTCCTACGGGGTGGAGACAATGGGGTCGGTCCATGGATTTTCCT
TCCTTTTGCCGCATTTCGCTCAAAGGGTTGAAGGGAGATAGTGCATCAAGCCGTTCGCAAGGGCC
AACTTGATCCTCTTCCAGTTCCTACGGGGTGGAGACAATGGGGTCGGTCCATGGATTTTCCTTCC
TTTTGCCGCATTTCGCTCAAAGGGTTGAAGGGAGATAGTGCATCAAGCCGTTCGCAAGGGCCAAC
TTGATCCTCTTCCCCAGGGATCCCAGATGAGGGAACCCTAGGAGAGCCGCCGACTCCAACTACCG
TCCATGTACGATCCATACTAGATCTGACCAACTGCCCATCCTACCTCCTCTACGTTCTTGACAGC
CCATCTTTGTCTCAGTAGAGTCTTTCGGTGGCATGTTTCGGTCCTCTTTCCCATTACTTAGAAAA
AGTGAGCCACCGGTTCAGGTACAAAATACTATCATTACCGCCTGG
Right flanking sequence: Indices 341407 -- 341906
CCCTGGCGCAGCTGGGCCATCCTGGACTTGAACCAGAGACCTCGCCCGTGAAGTAAATCATCGCA
CCTACGGTCCAACCAATTGGGAGAGAATCTATAGATTCCTTTTCGGAAGCGATTCATCCTTCCCG
AACGCAGCATACAACTCCCCGTTGTACTGCGCTCTCCGAGTGTGCTTGTTCCCCCCTTCTTCCTT
ACCATGGCAAGTCTTTGTGAAATAACTCCGATGAGAAGAAAAAAGAAGGTGTTAAGAGACCCTCC
TGGCCCAACCCTAGACACTCTAAGATCCTTTTTATAACCTGCTCGCCATTTCGAGTCAAGAGATA
GATAAATAGACACATCCCATTGCACTGATCGGGGGCGTTCGTAGTGACTGAGGGGGTCGAAGACC
AAGAAGCGAGTTATTTATACCAAGCATTCTTCTTACGGCTAGATCCAATCTCCTGGTCCCTGCAG
AAAGGAAAAAGAATTTCACGTTCTTCCCGAAGTGAGCAAATTGCA
Found at i:363022 original size:127 final size:127
Alignment explanation
Indices: 362796--363049 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
362786 CGTATGAAAT
362796 CCCAAACAATGCCCAAAGACTCCCATGCCTTTCTTGGTTGGACCAACCCAACCGGCGATTTCCGT
1 CCCAAACAATGCCCAAAGACTCCCATGCCTTTCTTGGTTGGACCAACCCAACCGGCGATTTCCGT
362861 CTTCCTGAATTAGGAGAGCAAGAACAAGTCTCTCTTTTTTTGGGGGGGGAGCAGAGCAGTCA
66 CTTCCTGAATTAGGAGAGCAAGAACAAGTCTCTCTTTTTTTGGGGGGGGAGCAGAGCAGTCA
362923 CCCAAACAATGCCCAAAGACTCCCATGCCTTTCTTGGTTGGACCAACCCAACCGGCGATTTCCGT
1 CCCAAACAATGCCCAAAGACTCCCATGCCTTTCTTGGTTGGACCAACCCAACCGGCGATTTCCGT
362988 CTTCCTGAATTAGGAGAGCAAGAACAAGTCTCTCTTTTTTTGGGGGGGGAGCAGAGCAGTCA
66 CTTCCTGAATTAGGAGAGCAAGAACAAGTCTCTCTTTTTTTGGGGGGGGAGCAGAGCAGTCA
363050 AAGAATGAAG
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (127 bp):
CCCAAACAATGCCCAAAGACTCCCATGCCTTTCTTGGTTGGACCAACCCAACCGGCGATTTCCGT
CTTCCTGAATTAGGAGAGCAAGAACAAGTCTCTCTTTTTTTGGGGGGGGAGCAGAGCAGTCA
Left flanking sequence: Indices 362296 -- 362795
GCTGACAAACACAAGCAAAGGGTTCTGGAATTGTAGTACATAAACGAAAGGTAGGCTAAAGGGTC
AATGACCAAACTAGCAAAAACGAAGACGTGACTGAAAGCCCCCGGAATAAGGCATTATACGGAGA
GATTCACCTACGACCCCTTTCTCGCTATCTAAAGGGGGGGAGTGAAGGCCCCCAAAGCGTGATAG
CTTAAGTCGACTTCGAGCTCGCCAAGTTAGCTTTATTTTCCTGCGCCCGCTAGATCGTACTAATC
AGACTAATCAGACGTTAGCCTTGAGTCTGCTGGGTCTTCCTTGTACTGGAATGGAAGTGTAGATA
TGTTGCGCCCACCCGAAGTTATTCTATTATGAATTGTCGCGCCTTCGAGTTCAATAAATTTAAAT
AAGGTTGAGTTCCTTCGCTCCATTCCGAGCTGCTATCTCCGACCGAGATTGCAGGTTTTAACTAA
TATATTATTTGAAAGTGAAATTTAAATCGAAATAGCGTATGAAAT
Right flanking sequence: Indices 363050 -- 363549
AAGAATGAAGCAAACAAAATGATTGTTCTAGAATGGCTATTCCTCACAATTGCTCCTTGTGATGC
AGCGGAACCATGGGAGAGCAAGAACAAGTCTCTCTTTTTTTGGGGGGGGAGCAGAGCAGTCAAAG
AATGAAGCAAACAAAATGATTGTTCTAGAATGGCTATTCCTCACAATTGCTCCTTGTGATGCAGC
GGAACCATGAGCAATAGGAAGAGGAATCATTTCAAATGATGCACGAGGGCTGTCGGTAACAGCGC
TATGGAACGACTCCACCAACCCAACTCAAATCAGGTCTGGCTTTGGAAAGAGACTGAACTGATGG
ATTAGCGAAAACAGTTGATTTCTAGGTGCAGCTCTGTGTCTTCGTTTCCCCTCTCGCTCTCTCTA
GTCTCCAAGAACTGTCCTTCCATACGACTGATGTTCACCTTCTTCTATTATGATTTTTTCTACTT
GATTGAGTTTATATCAGAATAGAAGACGATGTTCATTGGATGACT
Found at i:363131 original size:127 final size:127
Alignment explanation
Indices: 363000--363253 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
362990 TCCTGAATTA
363000 GGAGAGCAAGAACAAGTCTCTCTTTTTTTGGGGGGGGAGCAGAGCAGTCAAAGAATGAAGCAAAC
1 GGAGAGCAAGAACAAGTCTCTCTTTTTTTGGGGGGGGAGCAGAGCAGTCAAAGAATGAAGCAAAC
363065 AAAATGATTGTTCTAGAATGGCTATTCCTCACAATTGCTCCTTGTGATGCAGCGGAACCATG
66 AAAATGATTGTTCTAGAATGGCTATTCCTCACAATTGCTCCTTGTGATGCAGCGGAACCATG
363127 GGAGAGCAAGAACAAGTCTCTCTTTTTTTGGGGGGGGAGCAGAGCAGTCAAAGAATGAAGCAAAC
1 GGAGAGCAAGAACAAGTCTCTCTTTTTTTGGGGGGGGAGCAGAGCAGTCAAAGAATGAAGCAAAC
363192 AAAATGATTGTTCTAGAATGGCTATTCCTCACAATTGCTCCTTGTGATGCAGCGGAACCATG
66 AAAATGATTGTTCTAGAATGGCTATTCCTCACAATTGCTCCTTGTGATGCAGCGGAACCATG
363254 AGCAATAGGA
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (127 bp):
GGAGAGCAAGAACAAGTCTCTCTTTTTTTGGGGGGGGAGCAGAGCAGTCAAAGAATGAAGCAAAC
AAAATGATTGTTCTAGAATGGCTATTCCTCACAATTGCTCCTTGTGATGCAGCGGAACCATG
Left flanking sequence: Indices 362500 -- 362999
ACTTCGAGCTCGCCAAGTTAGCTTTATTTTCCTGCGCCCGCTAGATCGTACTAATCAGACTAATC
AGACGTTAGCCTTGAGTCTGCTGGGTCTTCCTTGTACTGGAATGGAAGTGTAGATATGTTGCGCC
CACCCGAAGTTATTCTATTATGAATTGTCGCGCCTTCGAGTTCAATAAATTTAAATAAGGTTGAG
TTCCTTCGCTCCATTCCGAGCTGCTATCTCCGACCGAGATTGCAGGTTTTAACTAATATATTATT
TGAAAGTGAAATTTAAATCGAAATAGCGTATGAAATCCCAAACAATGCCCAAAGACTCCCATGCC
TTTCTTGGTTGGACCAACCCAACCGGCGATTTCCGTCTTCCTGAATTAGGAGAGCAAGAACAAGT
CTCTCTTTTTTTGGGGGGGGAGCAGAGCAGTCACCCAAACAATGCCCAAAGACTCCCATGCCTTT
CTTGGTTGGACCAACCCAACCGGCGATTTCCGTCTTCCTGAATTA
Right flanking sequence: Indices 363254 -- 363753
AGCAATAGGAAGAGGAATCATTTCAAATGATGCACGAGGGCTGTCGGTAACAGCGCTATGGAACG
ACTCCACCAACCCAACTCAAATCAGGTCTGGCTTTGGAAAGAGACTGAACTGATGGATTAGCGAA
AACAGTTGATTTCTAGGTGCAGCTCTGTGTCTTCGTTTCCCCTCTCGCTCTCTCTAGTCTCCAAG
AACTGTCCTTCCATACGACTGATGTTCACCTTCTTCTATTATGATTTTTTCTACTTGATTGAGTT
TATATCAGAATAGAAGACGATGTTCATTGGATGACTAGTATCATATAGGACGGAAGTATCAAGTA
AAGTATGGCAGGATAAAGCTAATCAATGATCTAAGGTGTAAGGTGACATATACTCAAGGCAAGCG
CTTCTTCATGTCTCAAGTGCAAATGGGGAGTGCCAGTTGACAGGCGGTCGGTTAGTGTCGATTGG
GTGTACAGAATTCCCGGGTTCAGTTTCAGCCAAAGTAGCACTCGC
Found at i:383274 original size:127 final size:127
Alignment explanation
Indices: 383048--383302 Score: 510
Period size: 127 Copynumber: 2.0 Consensus size: 127
383038 AGAAACTTTC
383048 CGGGCTATACCCGAACTTATTCTCGGGGAGAGGAAGGAGCGTAAGAGTACAGTCAGACAGTAATC
1 CGGGCTATACCCGAACTTATTCTCGGGGAGAGGAAGGAGCGTAAGAGTACAGTCAGACAGTAATC
383113 GCCCACACAACTAAGACTAGGGGCATTAGATGGCGAAAGTCCCATAGCGTACTCTCGAAGAG
66 GCCCACACAACTAAGACTAGGGGCATTAGATGGCGAAAGTCCCATAGCGTACTCTCGAAGAG
383175 CGGGCTATACCCGAACTTATTCTCGGGGAGAGGAAGGAGCGTAAGAGTACAGTCAGACAGTAATC
1 CGGGCTATACCCGAACTTATTCTCGGGGAGAGGAAGGAGCGTAAGAGTACAGTCAGACAGTAATC
383240 GCCCACACAACTAAGACTAGGGGCATTAGATGGCGAAAGTCCCATAGCGTACTCTCGAAGAG
66 GCCCACACAACTAAGACTAGGGGCATTAGATGGCGAAAGTCCCATAGCGTACTCTCGAAGAG
383302 C
1 C
383303 TTCTTCTGAG
Statistics
Matches: 128, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 128 1.00
ACGTcount: A:0.31, C:0.23, G:0.28, T:0.17
Consensus pattern (127 bp):
CGGGCTATACCCGAACTTATTCTCGGGGAGAGGAAGGAGCGTAAGAGTACAGTCAGACAGTAATC
GCCCACACAACTAAGACTAGGGGCATTAGATGGCGAAAGTCCCATAGCGTACTCTCGAAGAG
Left flanking sequence: Indices 382548 -- 383047
TCTACACGGGAATAAAGCTTTTCAAAGCACCCGCTGATTGAACAACTGAATATCCGGAGCTTTTC
AATATTCAGATGTTATATCGGATTTTTCTCTGGGTTCCAAACCCCCAGTGTATACTTTTTTTTTT
CGCCTTTAGCTCCTTCCTTCCGGCGGTCATCACCCCCGGATTGGACGCAAACAAGCGCACCAGCT
ATATATAATAATTCCCCCTAAATGATCATAGGCCGGTCAGTTCTAAGCTCTAAGAGGGATAAGAA
CCCCCATATCTTACCACCGCTTTACTCTTTGAGTTGATAGCCAAAGAGATATTCTAAATAAGAAA
GGGAGGGGATCCACAACGAAGGAAGGGATACTACTAATGCTTGCTTCAATCGCTTTCTTTATCTT
GTGGTCGACTGCAATTGAAAGATTCGTTCCTGTTTTAGGATTGGGGAGGTGTCCGCCCACTAATG
TAAAGATTGGGCGTGGGAGAGGTTAATTCGACGAAAGAAACTTTC
Right flanking sequence: Indices 383303 -- 383802
TTCTTCTGAGCATGAATGTCCAGCCTTGATCTTATTATACGAAACCGCTTGCCATAACCGGATTA
GGGAAAGGAAGTCCCAAGAGTGAGGGGCTTTGAAGATATGGGGCAATTAAATGATTGCACTAGAT
TAGTTGAAAGCCAGACTGACCGATTTCAGTAAGAGCAAATTCAATAGCAAAGGATTCTAAACCTT
CCCTTCTACTGCCAACCATGCTTCCTCTTCTCGACAGATGCTTGATTCAGGATAGCTGTAGAAAG
ACCATATCCTGACATCAGGCATATTATTGAAGCAGCCTTTACGCTACACATACTTCTAATGCCAG
GAGAGCGTCGAATCCGTCTCTGTTAACTCATGTCTACTTCTCTTTTTGTAAGAAGAACATTGGCC
TAAATGCCATTTTCCTTCTACGAGGATTAGGGGTCCCTTCCGCTAACACAAGGCAAGACCGTCTT
TTTGGCATCAATCATCAAATCAGGCAAAGATTCATGCACACCCCC
Found at i:383857 original size:15 final size:15
Alignment explanation
Indices: 383833--383866 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
383823 TCTTCAGCTG
*
383833 CTTCCTCCTTTGCTA
1 CTTCCGCCTTTGCTA
*
383848 CTTCCGCCTTTGCTC
1 CTTCCGCCTTTGCTA
383863 CTTC
1 CTTC
383867 TATGTGCGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.03, C:0.44, G:0.09, T:0.44
Consensus pattern (15 bp):
CTTCCGCCTTTGCTA
Left flanking sequence: Indices 383333 -- 383832
CTTATTATACGAAACCGCTTGCCATAACCGGATTAGGGAAAGGAAGTCCCAAGAGTGAGGGGCTT
TGAAGATATGGGGCAATTAAATGATTGCACTAGATTAGTTGAAAGCCAGACTGACCGATTTCAGT
AAGAGCAAATTCAATAGCAAAGGATTCTAAACCTTCCCTTCTACTGCCAACCATGCTTCCTCTTC
TCGACAGATGCTTGATTCAGGATAGCTGTAGAAAGACCATATCCTGACATCAGGCATATTATTGA
AGCAGCCTTTACGCTACACATACTTCTAATGCCAGGAGAGCGTCGAATCCGTCTCTGTTAACTCA
TGTCTACTTCTCTTTTTGTAAGAAGAACATTGGCCTAAATGCCATTTTCCTTCTACGAGGATTAG
GGGTCCCTTCCGCTAACACAAGGCAAGACCGTCTTTTTGGCATCAATCATCAAATCAGGCAAAGA
TTCATGCACACCCCCCAGAAATAGTAAATGGCCGTTCTTCAGCTG
Right flanking sequence: Indices 383867 -- 384366
TATGTGCGTGGATATCTTCTACTATTGGATTCACTATTCCGAAAGCCCATCTTCTTTCAAAGGCA
AAAGCCCGTCATTTCAGTCTGAGATGCCCCCCGTCGAATGCTACTTCCGCCTTTGCTCCTTCTAT
GTGCGTGGATATCTTCTACTATTGGATTCACTATTCCGAAAGCCCATCTTCTTTCAAAGGCAAAA
GCCCGTCATTTCAGTCTGAGATGCCCCCCGTCGAAAGCTGCGGCAGTTGGGAGTTTCAAGAAGAC
CAATGATCACCCACTGATCGAGTTGGGGAGTTTACCTCTGCCTTCTTCTTTCCGATTGATCAAGT
AAAAAAAAATACAGTTGATTACGAGACTTTCTGATAGATGATAGTTCCCAGTAGAGCGGGAAGGC
TTAGTTAAAAGAAAAGCAAAAGCCCTCTTTCACTTCTCGGAGTATCACAAATTGGCTGCTCACTC
AGTAGTGGACTCACCATAGCGCGCTAAAGCAGAATGAACAGGACA
Found at i:384069 original size:127 final size:127
Alignment explanation
Indices: 383843--384096 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
383833 CTTCCTCCTT
383843 TGCTACTTCCGCCTTTGCTCCTTCTATGTGCGTGGATATCTTCTACTATTGGATTCACTATTCCG
1 TGCTACTTCCGCCTTTGCTCCTTCTATGTGCGTGGATATCTTCTACTATTGGATTCACTATTCCG
383908 AAAGCCCATCTTCTTTCAAAGGCAAAAGCCCGTCATTTCAGTCTGAGATGCCCCCCGTCGAA
66 AAAGCCCATCTTCTTTCAAAGGCAAAAGCCCGTCATTTCAGTCTGAGATGCCCCCCGTCGAA
383970 TGCTACTTCCGCCTTTGCTCCTTCTATGTGCGTGGATATCTTCTACTATTGGATTCACTATTCCG
1 TGCTACTTCCGCCTTTGCTCCTTCTATGTGCGTGGATATCTTCTACTATTGGATTCACTATTCCG
384035 AAAGCCCATCTTCTTTCAAAGGCAAAAGCCCGTCATTTCAGTCTGAGATGCCCCCCGTCGAA
66 AAAGCCCATCTTCTTTCAAAGGCAAAAGCCCGTCATTTCAGTCTGAGATGCCCCCCGTCGAA
384097 AGCTGCGGCA
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.20, C:0.30, G:0.17, T:0.32
Consensus pattern (127 bp):
TGCTACTTCCGCCTTTGCTCCTTCTATGTGCGTGGATATCTTCTACTATTGGATTCACTATTCCG
AAAGCCCATCTTCTTTCAAAGGCAAAAGCCCGTCATTTCAGTCTGAGATGCCCCCCGTCGAA
Left flanking sequence: Indices 383343 -- 383842
GAAACCGCTTGCCATAACCGGATTAGGGAAAGGAAGTCCCAAGAGTGAGGGGCTTTGAAGATATG
GGGCAATTAAATGATTGCACTAGATTAGTTGAAAGCCAGACTGACCGATTTCAGTAAGAGCAAAT
TCAATAGCAAAGGATTCTAAACCTTCCCTTCTACTGCCAACCATGCTTCCTCTTCTCGACAGATG
CTTGATTCAGGATAGCTGTAGAAAGACCATATCCTGACATCAGGCATATTATTGAAGCAGCCTTT
ACGCTACACATACTTCTAATGCCAGGAGAGCGTCGAATCCGTCTCTGTTAACTCATGTCTACTTC
TCTTTTTGTAAGAAGAACATTGGCCTAAATGCCATTTTCCTTCTACGAGGATTAGGGGTCCCTTC
CGCTAACACAAGGCAAGACCGTCTTTTTGGCATCAATCATCAAATCAGGCAAAGATTCATGCACA
CCCCCCAGAAATAGTAAATGGCCGTTCTTCAGCTGCTTCCTCCTT
Right flanking sequence: Indices 384097 -- 384596
AGCTGCGGCAGTTGGGAGTTTCAAGAAGACCAATGATCACCCACTGATCGAGTTGGGGAGTTTAC
CTCTGCCTTCTTCTTTCCGATTGATCAAGTAAAAAAAAATACAGTTGATTACGAGACTTTCTGAT
AGATGATAGTTCCCAGTAGAGCGGGAAGGCTTAGTTAAAAGAAAAGCAAAAGCCCTCTTTCACTT
CTCGGAGTATCACAAATTGGCTGCTCACTCAGTAGTGGACTCACCATAGCGCGCTAAAGCAGAAT
GAACAGGACATGTAACCAATCCCCATCCGACAAAGGCAAGGCGAAGAGCTCCGCGAACAGAGTCA
AGCCAAACCTTCAACGAGAGACTAATCATCTCCTTCTTTGTCTTTCGGATTGACTGGAGCAGGAA
GGGAGACCGCAGGCTCACATCTCGGTACTCTTTAATCAATCTAGGTACGGCTTGTTCAGTTCACT
GGGAAAGAATCTCGTGTCGTTGTTTTCTTCCGGCGGAAAGAGGCA
Found at i:388712 original size:22 final size:23
Alignment explanation
Indices: 388666--388712 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
388656 AACAAATATT
* *
388666 TATATTTATCCTTTGAATTACTCA
1 TATATATATCCTATGAATTA-TCA
388690 TATATATATCCTATGAATT-TCA
1 TATATATATCCTATGAATTATCA
388712 T
1 T
388713 TTCGCACCGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 4 0.19
24 17 0.81
ACGTcount: A:0.32, C:0.15, G:0.04, T:0.49
Consensus pattern (23 bp):
TATATATATCCTATGAATTATCA
Left flanking sequence: Indices 388166 -- 388665
TCAATAGTAGACGAGGATGGCATCGAATTATGTTGGAGCCAAATCCTCTTCAGGACCCAACCCCC
TCTCATGCCCCTGTGGAGTCGCCTCTATCATTATCTCCTTCTTCTGAATAACTTCTAAGAAAGAT
AATGATGGAGGAGGGGACTTCTGTTTCACAAGAAGCGGGGCAACCTTCCAATTATAACCCAATTA
GAGCCGGGGTGGAAGTTGAACTCATTCGCGTCTTACGGAAGTTAGAACCGACTGCTCTACAAGCG
AACGCTTATTGAATCGCCTTGAACTGGAAAAGGCTTCGGATGAGCTTCTGATTGCAATAAAGCAA
CAAATCTTGAATATTGAGGGCAATAGGCCACAAAACAGGACAAAAGCGGTTACCATTTTTTTTAA
ATCAAAAACTGGAAAAAAAAAAGCCTTCGATGTAGTGATGAAATTGTGATACATAATCAATCCTA
TTTGTTTTGTTCATTACTAAAATGAATCGAATCCTAACAAATATT
Right flanking sequence: Indices 388713 -- 389212
TTCGCACCGGAAACTATTCTAGGAGAAGTTCGAATCCGTTCCGTTCGGATATTGATCGGTCTTGG
TTTGACATGGTTTACGCGTTACTGGTTCCCGGAAGAGTTAATATCTCCATTAGCTAAACCCTTTC
TTACCCTGCCTTTGGACTCGTATTTTGTTCGTACACAATCAACGGAGGCCTCCCCGACATATGTT
GCAACGTCTCCAATAGCATGCTCTTACTTCGTCTTTCCCTTAATAAGTCATCAAATTTGGTGCTT
TTTGATCCCCAGTTGCTATGGAGAACAAAGGACGAAATACAATCGATTACTCTATTTAAGTGGTT
CTCGCTTCTCCTTGTTCCTGTTCCTAACTCCTCCCCGGGTAGTTCCCAATGTTTGGCACTTTCCA
TACTTCGTGGGTGCAACATCAACAAATTCGCTCATGATCAAGTTACAACCTAAGATCTATGACCA
TATTATGTTAACTGTTCGTATTTCGTTCATTCCATCGGTATGCTC
Found at i:413309 original size:127 final size:127
Alignment explanation
Indices: 413083--413464 Score: 696
Period size: 127 Copynumber: 3.0 Consensus size: 127
413073 GAGGCCTATC
413083 GATGACCGAGCCACTCTTATACTACTCCTTACCTCACCCCCCTTGTCACTTAAAGGGCGAAGTCG
1 GATGACCGAGCCACTCTTATACTACTCCTTACCTCACCCCCCTTGTCACTTAAAGGGCGAAGTCG
413148 CCGAAGCGAGTCTAAAGGCCAAAGAGTGATCTTTGAACGCCCTTACTCATAGTAGAGTGTAA
66 CCGAAGCGAGTCTAAAGGCCAAAGAGTGATCTTTGAACGCCCTTACTCATAGTAGAGTGTAA
413210 GATGACCGAGCCACTCTTATACTACTCCTTACCTCACCCCCCTTGTCACTTAAAGGGCGAAGTCG
1 GATGACCGAGCCACTCTTATACTACTCCTTACCTCACCCCCCTTGTCACTTAAAGGGCGAAGTCG
413275 CCGAAGCGAGTCTAAAGGCCAAAGAGTGATCTTTGAACGCCCTTACTCATAGTAGAGTGTAA
66 CCGAAGCGAGTCTAAAGGCCAAAGAGTGATCTTTGAACGCCCTTACTCATAGTAGAGTGTAA
* * * *
413337 GGT-A-GGTTTGGCACTCTTATACTACTCCTTACCTCACCCCCCTTGTCACTTAAAGGGCGAAGT
1 GATGACCG--AGCCACTCTTATACTACTCCTTACCTCACCCCCCTTGTCACTTAAAGGGCGAAGT
413400 CGCCGAAGCGAGTCTAAAGGCCAAAGAGTGATCTTTGAACGCCCTTACTCATAGTAGAGTGTAA
64 CGCCGAAGCGAGTCTAAAGGCCAAAGAGTGATCTTTGAACGCCCTTACTCATAGTAGAGTGTAA
413464 G
1 G
413465 GTAGGTTTGG
Statistics
Matches: 249, Mismatches: 4, Indels: 4
0.97 0.02 0.02
Matches are distributed among these distances:
125 1 0.00
126 1 0.00
127 247 0.99
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (127 bp):
GATGACCGAGCCACTCTTATACTACTCCTTACCTCACCCCCCTTGTCACTTAAAGGGCGAAGTCG
CCGAAGCGAGTCTAAAGGCCAAAGAGTGATCTTTGAACGCCCTTACTCATAGTAGAGTGTAA
Left flanking sequence: Indices 412583 -- 413082
AGCGCGGGATAAAGGAACAACAGGATTACAACATTGCAGGATCAATCAGAATGCGGGAGCGCAGA
GCCTTTAAGAGATAGGGGGTGCGGGAGCATAATACTTCAGAGTAATGAGGCCCCGCGGTTTTTCA
CGCGGATTTGACCATGGTGTGCACCCCCCTTAACCCCTATTACGTAAGGGGGACCTTCACGGGAT
AAAAGAGAGTGCGGGAAAAGCAGCTACAGGTACAGGGCAAAAGAGTGGCGCACTTAAAGAGTAGA
GCACTCCATCGTAGCGCAAAAGAGCATCCCGCAGAAATCAGATCCCGCGGAAAGTTTAAACTGAC
TTTTCTGTCCAGCTGAAAAACGGAATGGAATACTCTAAGATGCTTCATAGCCTTACCTTATTATT
TATTATTAAAAGAAAGGGGAAGGGGCTTTTGCGAAAGGAGCTTTTAAGCCCTTTTGCTGGATTGT
TGGTCCGCAGCCCCGCCCTATAGAATGAATAAGGAGAGGCCTATC
Right flanking sequence: Indices 413465 -- 413964
GTAGGTTTGGAAAGCCTGTCGATCCATCCTGATTAACTTACGCTATTTATGACTAGAGAGAGGAC
TTAGATCGGAGAGGTTTTCTTTTTAACAGAAAGCAGTGATGAATGGGACGGAGCTAGTAGTTGGA
TGGGATTCGTGTGTGGTGGTATCAATTCATTCCCTCATGCGCATCTAGTGCAGTGTCTCTGTAAC
GTTCATAAACCCCCTCCGGTTTAGAAAGATAGCAGCCATCCAGCCCCTACTGTGGGAAGTCTGCT
TTGCAGCTTTCTGCATCTGATAAAACCGATATGCGAAATTAAAACTTAGCCCTTGTCGCATATCA
GCTGTCTTGCTATTGATGTAGCATATCACTAGTGATGTCGCTGATCAGCTTAAATAAGAGATTGT
AACCTTCGTTACCTTGCTTTGGATCCTTACTCGCTGTTGGGATAGGAATGAAGCCAGTGTCCCTT
CCAGTCCGATCAATAGTTACCCACGTGCACGTGAAAAGGACACTG
Found at i:428081 original size:127 final size:127
Alignment explanation
Indices: 427855--428108 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
427845 CTTAACTCGG
427855 CCCAAACAATGCCCAAAGACTCCCATGCCTTTCTTGGTTGGACCAACCCAACCGGCGATTTCCGT
1 CCCAAACAATGCCCAAAGACTCCCATGCCTTTCTTGGTTGGACCAACCCAACCGGCGATTTCCGT
427920 CTTCCTGAATTAGGAGAGCAAGAACAAGTCTCTCTTTTTTTGGGGGGGGAGCAGAGCAGTCA
66 CTTCCTGAATTAGGAGAGCAAGAACAAGTCTCTCTTTTTTTGGGGGGGGAGCAGAGCAGTCA
427982 CCCAAACAATGCCCAAAGACTCCCATGCCTTTCTTGGTTGGACCAACCCAACCGGCGATTTCCGT
1 CCCAAACAATGCCCAAAGACTCCCATGCCTTTCTTGGTTGGACCAACCCAACCGGCGATTTCCGT
428047 CTTCCTGAATTAGGAGAGCAAGAACAAGTCTCTCTTTTTTTGGGGGGGGAGCAGAGCAGTCA
66 CTTCCTGAATTAGGAGAGCAAGAACAAGTCTCTCTTTTTTTGGGGGGGGAGCAGAGCAGTCA
428109 AAGAATGAAG
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.24
Consensus pattern (127 bp):
CCCAAACAATGCCCAAAGACTCCCATGCCTTTCTTGGTTGGACCAACCCAACCGGCGATTTCCGT
CTTCCTGAATTAGGAGAGCAAGAACAAGTCTCTCTTTTTTTGGGGGGGGAGCAGAGCAGTCA
Left flanking sequence: Indices 427355 -- 427854
TCTCAGCGCTAGCCTAGCTAACTGCCACTCAGCCATTCCCTTCTGTACTTCTATTCTATAGATAT
CACTTGATAATTATAAATAGAAAGAGGGGCTTAGTAGTTATATCTGCATATAAAGCGTGGAGGAG
ATACAGGAGACTTGGACAAGGCTTTTTTAGGACGGGCAAGAGCCACGAGAGAGGTTTTCCTATCA
TCCGCCGCTAGAAGCAATCGGTAATGAATGGAATAAGAGGAGCAGCCAAAGGGGCACCTATTTGC
ATCTGAAAAGCGGTACAGTCTGACCCTCCCTTGCTGCATCAGTAAGATACAGCAAGCAACAGCTA
ATGTAATGCTATTTTTATATGTATGCAGGCTAGGCCTTTTCTTTCGTATCGAGAAAGCCGCTTCA
GAAAAGAAAGCGGAGGCTGCTATGGACGTCTTTGATTGGATGGAGACAGATATATATAGAAAGTG
TGCAGTGAGGGATCTTTATAGGTAGCCAGTCTTTACTTAACTCGG
Right flanking sequence: Indices 428109 -- 428608
AAGAATGAAGCAAACAAAATGATTGTTCTAGAATGGCTATTCCTCACAATTGCTCCTTGTGATGC
AGCGGAACCATGGGAGAGCAAGAACAAGTCTCTCTTTTTTTGGGGGGGGAGCAGAGCAGTCAAAG
AATGAAGCAAACAAAATGATTGTTCTAGAATGGCTATTCCTCACAATTGCTCCTTGTGATGCAGC
GGAACCATGGCAATTAGGATCTCAAGACGCAGCAACACCTATGATGCAAGGAATAATGGACTTAC
ATCACGATATCTTTTTCTTCCTCATTCTGATTTTTGTTTTCGTATCACGGATCTTGGTTCGCGCT
TTATGGCATTTCAACTATAAAAAAAATCCAATCCCGCAAAGGATTGTTCATGGAACTACTATCGA
GATTCTTCGGACCATATTTCCTAGTATCATCCCGATGTTCATTGCTATACCATCATTTGCTCTGT
TATACTCAATGGACGAGGTAGTAGTAGATCCAGCCATTACTATCA
Found at i:428190 original size:127 final size:127
Alignment explanation
Indices: 428059--428313 Score: 510
Period size: 127 Copynumber: 2.0 Consensus size: 127
428049 TCCTGAATTA
428059 GGAGAGCAAGAACAAGTCTCTCTTTTTTTGGGGGGGGAGCAGAGCAGTCAAAGAATGAAGCAAAC
1 GGAGAGCAAGAACAAGTCTCTCTTTTTTTGGGGGGGGAGCAGAGCAGTCAAAGAATGAAGCAAAC
428124 AAAATGATTGTTCTAGAATGGCTATTCCTCACAATTGCTCCTTGTGATGCAGCGGAACCATG
66 AAAATGATTGTTCTAGAATGGCTATTCCTCACAATTGCTCCTTGTGATGCAGCGGAACCATG
428186 GGAGAGCAAGAACAAGTCTCTCTTTTTTTGGGGGGGGAGCAGAGCAGTCAAAGAATGAAGCAAAC
1 GGAGAGCAAGAACAAGTCTCTCTTTTTTTGGGGGGGGAGCAGAGCAGTCAAAGAATGAAGCAAAC
428251 AAAATGATTGTTCTAGAATGGCTATTCCTCACAATTGCTCCTTGTGATGCAGCGGAACCATG
66 AAAATGATTGTTCTAGAATGGCTATTCCTCACAATTGCTCCTTGTGATGCAGCGGAACCATG
428313 G
1 G
428314 CAATTAGGAT
Statistics
Matches: 128, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 128 1.00
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (127 bp):
GGAGAGCAAGAACAAGTCTCTCTTTTTTTGGGGGGGGAGCAGAGCAGTCAAAGAATGAAGCAAAC
AAAATGATTGTTCTAGAATGGCTATTCCTCACAATTGCTCCTTGTGATGCAGCGGAACCATG
Left flanking sequence: Indices 427559 -- 428058
AGAAGCAATCGGTAATGAATGGAATAAGAGGAGCAGCCAAAGGGGCACCTATTTGCATCTGAAAA
GCGGTACAGTCTGACCCTCCCTTGCTGCATCAGTAAGATACAGCAAGCAACAGCTAATGTAATGC
TATTTTTATATGTATGCAGGCTAGGCCTTTTCTTTCGTATCGAGAAAGCCGCTTCAGAAAAGAAA
GCGGAGGCTGCTATGGACGTCTTTGATTGGATGGAGACAGATATATATAGAAAGTGTGCAGTGAG
GGATCTTTATAGGTAGCCAGTCTTTACTTAACTCGGCCCAAACAATGCCCAAAGACTCCCATGCC
TTTCTTGGTTGGACCAACCCAACCGGCGATTTCCGTCTTCCTGAATTAGGAGAGCAAGAACAAGT
CTCTCTTTTTTTGGGGGGGGAGCAGAGCAGTCACCCAAACAATGCCCAAAGACTCCCATGCCTTT
CTTGGTTGGACCAACCCAACCGGCGATTTCCGTCTTCCTGAATTA
Right flanking sequence: Indices 428314 -- 428813
CAATTAGGATCTCAAGACGCAGCAACACCTATGATGCAAGGAATAATGGACTTACATCACGATAT
CTTTTTCTTCCTCATTCTGATTTTTGTTTTCGTATCACGGATCTTGGTTCGCGCTTTATGGCATT
TCAACTATAAAAAAAATCCAATCCCGCAAAGGATTGTTCATGGAACTACTATCGAGATTCTTCGG
ACCATATTTCCTAGTATCATCCCGATGTTCATTGCTATACCATCATTTGCTCTGTTATACTCAAT
GGACGAGGTAGTAGTAGATCCAGCCATTACTATCAAAGCTATTGGACATCAATGGTATCGGAGTG
CGCCTCTTCACGAGGGTGATTTAAGTAAGTGCAACGAAATGCCTTAAAGTGGAATATGGTTCGCG
AAGCATCTGGCTTACCGGTAATCTCCCATTCCCGTCGTCGAGAGACTTTTATAACTATAGCATGC
CAGAAACGGAGAGTTGAGGTGGTTAGACCTATATTTCGAAATGCT
Found at i:431725 original size:127 final size:127
Alignment explanation
Indices: 431499--431752 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
431489 GCTTATAGAA
431499 TAGAATGCAAGCAAGGTAGCTTGCTTACTATCCTAGTAGCGTACGTTGGTGGCAAGGAAGGAGGC
1 TAGAATGCAAGCAAGGTAGCTTGCTTACTATCCTAGTAGCGTACGTTGGTGGCAAGGAAGGAGGC
431564 ATTGGAAAAAGACTAGACCATACTAAAGTAAAGAGGCATTCGGGAAGCGACTAGTCGCTTCT
66 ATTGGAAAAAGACTAGACCATACTAAAGTAAAGAGGCATTCGGGAAGCGACTAGTCGCTTCT
431626 TAGAATGCAAGCAAGGTAGCTTGCTTACTATCCTAGTAGCGTACGTTGGTGGCAAGGAAGGAGGC
1 TAGAATGCAAGCAAGGTAGCTTGCTTACTATCCTAGTAGCGTACGTTGGTGGCAAGGAAGGAGGC
431691 ATTGGAAAAAGACTAGACCATACTAAAGTAAAGAGGCATTCGGGAAGCGACTAGTCGCTTCT
66 ATTGGAAAAAGACTAGACCATACTAAAGTAAAGAGGCATTCGGGAAGCGACTAGTCGCTTCT
431753 GGCGAAGCTT
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.22
Consensus pattern (127 bp):
TAGAATGCAAGCAAGGTAGCTTGCTTACTATCCTAGTAGCGTACGTTGGTGGCAAGGAAGGAGGC
ATTGGAAAAAGACTAGACCATACTAAAGTAAAGAGGCATTCGGGAAGCGACTAGTCGCTTCT
Left flanking sequence: Indices 430999 -- 431498
CCGGGAAGCCTCAATATGAGAGATCCCTCAAAATAGAGAAGGGCGGGCAGGGCTTCCGCAAGAGC
CTCCCCCCTCTTCCCGGTCAAGATAAATGGGAAGGAGCCCTATCAAGTAAAGGCCATAACCAGCC
TCTTTATTTATGTACGTACACCTTTGTTTCAGGGCCCTTCCTCCTGCTAATCCGGCCATTTCCGA
ACCTGTCTTTCCCACCCCTCAATGGAAGACTTCTCAATTCTTGCGATTCCCAGCTTATTATTATA
TTATTAGAATAGATAAATACTAAAAAACTAGGGTTCCAAACCTTACTTAGCTCGGCTAAATAGGC
TCAATGATCTCTTTCTTCGATAGGCCGGTCCGGCGCTCCGCGTGGTTATATTCGTACATGTTCAG
ACTCGCCGGTCATTATGGATCTAGTGGCATGGCGAGGCAAAGGGGGGGGGGAAGCAACTACGAAG
CTTCGTAGACTCGACAAGTCGCTCCGCTTAGCTCCGCTTATAGAA
Right flanking sequence: Indices 431753 -- 432252
GGCGAAGCTTCTAGAAGGCCGACCACTACATAGAGAGATCCATATACCAGTCATGAGCTATCGCT
CATGCCTAGAGAGGCGACCATACTAAAGTAAAGAGGCATTCGGGAAGCGACTAGTCGCTTCTGGC
GAAGCTTCTAGAAGGCCGACCACTACATAGAGAGATCCATATACCAGTCATGAGCTATCGCTCAT
GCCTAGAGAGGCGGAAGCAGTAGCTTCTAGGACGAAGCCGAGCCACTAGTGGAGTGGCGAAGGAG
GCCTACTATACGTATACTGGATTAGTAACCGGTAAAATACCAACGAAAAAAAAAAATGTCAGTGA
ACTATTGAAGCTATCAGTGTGATTGATCAGACAAGTACCATCGGTAGACTTCTTTCATTTCCGAA
TTTGCTTGCGACAAGTCCTAGCATTAGTATGAGTTCGTTGACCGCGTAAGGGCGATCCATCTTGA
TGACGAATTCCACGATAACGAGAAATATAAATTAATCGTTCGATG
Found at i:431837 original size:127 final size:127
Alignment explanation
Indices: 431706--431960 Score: 510
Period size: 127 Copynumber: 2.0 Consensus size: 127
431696 AAAAAGACTA
431706 GACCATACTAAAGTAAAGAGGCATTCGGGAAGCGACTAGTCGCTTCTGGCGAAGCTTCTAGAAGG
1 GACCATACTAAAGTAAAGAGGCATTCGGGAAGCGACTAGTCGCTTCTGGCGAAGCTTCTAGAAGG
431771 CCGACCACTACATAGAGAGATCCATATACCAGTCATGAGCTATCGCTCATGCCTAGAGAGGC
66 CCGACCACTACATAGAGAGATCCATATACCAGTCATGAGCTATCGCTCATGCCTAGAGAGGC
431833 GACCATACTAAAGTAAAGAGGCATTCGGGAAGCGACTAGTCGCTTCTGGCGAAGCTTCTAGAAGG
1 GACCATACTAAAGTAAAGAGGCATTCGGGAAGCGACTAGTCGCTTCTGGCGAAGCTTCTAGAAGG
431898 CCGACCACTACATAGAGAGATCCATATACCAGTCATGAGCTATCGCTCATGCCTAGAGAGGC
66 CCGACCACTACATAGAGAGATCCATATACCAGTCATGAGCTATCGCTCATGCCTAGAGAGGC
431960 G
1 G
431961 GAAGCAGTAG
Statistics
Matches: 128, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 128 1.00
ACGTcount: A:0.31, C:0.24, G:0.25, T:0.20
Consensus pattern (127 bp):
GACCATACTAAAGTAAAGAGGCATTCGGGAAGCGACTAGTCGCTTCTGGCGAAGCTTCTAGAAGG
CCGACCACTACATAGAGAGATCCATATACCAGTCATGAGCTATCGCTCATGCCTAGAGAGGC
Left flanking sequence: Indices 431206 -- 431705
CACCCCTCAATGGAAGACTTCTCAATTCTTGCGATTCCCAGCTTATTATTATATTATTAGAATAG
ATAAATACTAAAAAACTAGGGTTCCAAACCTTACTTAGCTCGGCTAAATAGGCTCAATGATCTCT
TTCTTCGATAGGCCGGTCCGGCGCTCCGCGTGGTTATATTCGTACATGTTCAGACTCGCCGGTCA
TTATGGATCTAGTGGCATGGCGAGGCAAAGGGGGGGGGGAAGCAACTACGAAGCTTCGTAGACTC
GACAAGTCGCTCCGCTTAGCTCCGCTTATAGAATAGAATGCAAGCAAGGTAGCTTGCTTACTATC
CTAGTAGCGTACGTTGGTGGCAAGGAAGGAGGCATTGGAAAAAGACTAGACCATACTAAAGTAAA
GAGGCATTCGGGAAGCGACTAGTCGCTTCTTAGAATGCAAGCAAGGTAGCTTGCTTACTATCCTA
GTAGCGTACGTTGGTGGCAAGGAAGGAGGCATTGGAAAAAGACTA
Right flanking sequence: Indices 431961 -- 432460
GAAGCAGTAGCTTCTAGGACGAAGCCGAGCCACTAGTGGAGTGGCGAAGGAGGCCTACTATACGT
ATACTGGATTAGTAACCGGTAAAATACCAACGAAAAAAAAAAATGTCAGTGAACTATTGAAGCTA
TCAGTGTGATTGATCAGACAAGTACCATCGGTAGACTTCTTTCATTTCCGAATTTGCTTGCGACA
AGTCCTAGCATTAGTATGAGTTCGTTGACCGCGTAAGGGCGATCCATCTTGATGACGAATTCCAC
GATAACGAGAAATATAAATTAATCGTTCGATGTCTGCTCGTTCTCCCCTCTTCAATTCCCAATGA
ACAACATGATCTTGACTTATCATTTGTTCAATTTTGTCGATCTGATACTTAGTTTACTCTTTTAT
CTTTATGTTCCCACTGATACCTAATCGATAACGAAACTGAATGGCTTTTTTAGGTCCAATTCCAT
CAATTTTTGTTGAGGCAATTCTTACTTGTTTATCGGCAACTGATC
Found at i:437389 original size:127 final size:127
Alignment explanation
Indices: 437163--437416 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
437153 TAGTTAAGAA
437163 GGGCTATACCCGAACTTATTCTCGGGGAGAGGAAGGAGCGTAAGAGTACAGTCAGACAGTAATCG
1 GGGCTATACCCGAACTTATTCTCGGGGAGAGGAAGGAGCGTAAGAGTACAGTCAGACAGTAATCG
437228 CCCACACAACTAAGACTAGGGGCATTAGATGGCGAAAGTCCCATAGCGTACTCTCGAAGAGC
66 CCCACACAACTAAGACTAGGGGCATTAGATGGCGAAAGTCCCATAGCGTACTCTCGAAGAGC
437290 GGGCTATACCCGAACTTATTCTCGGGGAGAGGAAGGAGCGTAAGAGTACAGTCAGACAGTAATCG
1 GGGCTATACCCGAACTTATTCTCGGGGAGAGGAAGGAGCGTAAGAGTACAGTCAGACAGTAATCG
437355 CCCACACAACTAAGACTAGGGGCATTAGATGGCGAAAGTCCCATAGCGTACTCTCGAAGAGC
66 CCCACACAACTAAGACTAGGGGCATTAGATGGCGAAAGTCCCATAGCGTACTCTCGAAGAGC
437417 TTCTTCTGAG
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.31, C:0.23, G:0.28, T:0.17
Consensus pattern (127 bp):
GGGCTATACCCGAACTTATTCTCGGGGAGAGGAAGGAGCGTAAGAGTACAGTCAGACAGTAATCG
CCCACACAACTAAGACTAGGGGCATTAGATGGCGAAAGTCCCATAGCGTACTCTCGAAGAGC
Left flanking sequence: Indices 436663 -- 437162
CTTACCACAGGAATCAGGAGAAAGAACGAAAGGACTTTACTTAAAAAAGTAAATTTCGGCTCAGT
GGACTCTATATCTAGGATAAGCATTTGATTGGCCTACAAGAACTACAATCACCACAAGGCGCCTA
TTTCTTTGCTTTGAAATACTTTAAATCCTTGTTCCCCCTTTAAGAAAGAAGGAAAGCCTGGATCT
TTCTTTGTCTCCTTCTACTTGGATTGTATTTTCCCTTTCTTTCTTTTACTTTGCTTATTAGCTGA
TTCCTCTTCTCTTACCCCTAACATCTTCATCTTCACTCCGGGGGGAGAGGAGATGAAGAAGCCCT
ACCATCAGTGCTATTTCCCCGGCTAAATGTACTCTAAGTCTTCGCTTCGCGCCTTGTCTTTCTTA
TTGCTTGAATCTAAATTGAAAGTTTGCACTCTATGGAGAATCTCTTTTGTTATGCACCTAATACA
AGATCAATCAAGTCTCTCTTTGATTCCACTACTGCTAGTTAAGAA
Right flanking sequence: Indices 437417 -- 437916
TTCTTCTGAGCATGAATGTCCAGCCTTGATCTTATTATACGAAACCGCTTGCCATAACCGGATTA
GGGAAAGGAAGTCCCAAGAGTGAGGGGCTTTGAAGATATGGGGCAATTAAATGATTGCACTAGAT
TAGTTGAAAGCCAGACTGACCGATTTCAGTAAGAGCAAATTCAATAGCAAAGGATTCTAAACCTT
CCCTTCTACTGCCAACCATGCTTCCTCTTCTCGACAGATGCTTGATTCAGGATAGCTGTAGAAAG
ACCATATCCTGACATCAGGCATATTATTGAAGCAGCCTTTACGCTACACATACTTCTAATGCCAG
GAGAGCGTCGAATCCGTCTCTGTTAACTCATGTCTACTTCTCTTTTTGTAAGAAGAACATTGGCC
TAAATGCCATTTTCCTTCTACGAGGATTAGGGGTCCCTTCCGCTAACACAAGGCAAGACCGTCTT
TTTGGCATCAATCATCAAATCAGGCAAAGATTCATGCACACCCCC
Found at i:437971 original size:15 final size:15
Alignment explanation
Indices: 437947--437980 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
437937 TCTTCAGCTG
*
437947 CTTCCTCCTTTGCTA
1 CTTCCGCCTTTGCTA
*
437962 CTTCCGCCTTTGCTC
1 CTTCCGCCTTTGCTA
437977 CTTC
1 CTTC
437981 TATGTGCGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.03, C:0.44, G:0.09, T:0.44
Consensus pattern (15 bp):
CTTCCGCCTTTGCTA
Left flanking sequence: Indices 437447 -- 437946
CTTATTATACGAAACCGCTTGCCATAACCGGATTAGGGAAAGGAAGTCCCAAGAGTGAGGGGCTT
TGAAGATATGGGGCAATTAAATGATTGCACTAGATTAGTTGAAAGCCAGACTGACCGATTTCAGT
AAGAGCAAATTCAATAGCAAAGGATTCTAAACCTTCCCTTCTACTGCCAACCATGCTTCCTCTTC
TCGACAGATGCTTGATTCAGGATAGCTGTAGAAAGACCATATCCTGACATCAGGCATATTATTGA
AGCAGCCTTTACGCTACACATACTTCTAATGCCAGGAGAGCGTCGAATCCGTCTCTGTTAACTCA
TGTCTACTTCTCTTTTTGTAAGAAGAACATTGGCCTAAATGCCATTTTCCTTCTACGAGGATTAG
GGGTCCCTTCCGCTAACACAAGGCAAGACCGTCTTTTTGGCATCAATCATCAAATCAGGCAAAGA
TTCATGCACACCCCCCAGAAATAGTAAATGGCCGTTCTTCAGCTG
Right flanking sequence: Indices 437981 -- 438480
TATGTGCGTGGATATCTTCTACTATTGGATTCACTATTCCGAAAGCCCATCTTCTTTCAAAGGCA
AAAGCCCGTCATTTCAGTCTGAGATGCCCCCCGTCGAATGCTACTTCCGCCTTTGCTCCTTCTAT
GTGCGTGGATATCTTCTACTATTGGATTCACTATTCCGAAAGCCCATCTTCTTTCAAAGGCAAAA
GCCCGTCATTTCAGTCTGAGATGCCCCCCGTCGAAGGCAAGGCAGATCTTTGGACATTCAAAGAA
GAGTTTGTCCCTTAAGATCAGACAAGAAAGAAGCCGATTCTGTTTGCGGGAAAGCAGAGGATTTG
CGACCTGTTAATGTACGAGCTAGGCTTGAACCGCTTAGGCTCTTTGCAAGAGTAGGCGGCTTATG
TCATTCTCTTTTTCCTCTTCTGCCTTTTATTTTTATAAGGTGTGCACGTGAAAAGGAAGATTCTA
TAAGAAGGACATCCCTTGTGTACGAACTAAGGCTATTCAAAGCAT
Found at i:438183 original size:127 final size:127
Alignment explanation
Indices: 437957--438210 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
437947 CTTCCTCCTT
437957 TGCTACTTCCGCCTTTGCTCCTTCTATGTGCGTGGATATCTTCTACTATTGGATTCACTATTCCG
1 TGCTACTTCCGCCTTTGCTCCTTCTATGTGCGTGGATATCTTCTACTATTGGATTCACTATTCCG
438022 AAAGCCCATCTTCTTTCAAAGGCAAAAGCCCGTCATTTCAGTCTGAGATGCCCCCCGTCGAA
66 AAAGCCCATCTTCTTTCAAAGGCAAAAGCCCGTCATTTCAGTCTGAGATGCCCCCCGTCGAA
438084 TGCTACTTCCGCCTTTGCTCCTTCTATGTGCGTGGATATCTTCTACTATTGGATTCACTATTCCG
1 TGCTACTTCCGCCTTTGCTCCTTCTATGTGCGTGGATATCTTCTACTATTGGATTCACTATTCCG
438149 AAAGCCCATCTTCTTTCAAAGGCAAAAGCCCGTCATTTCAGTCTGAGATGCCCCCCGTCGAA
66 AAAGCCCATCTTCTTTCAAAGGCAAAAGCCCGTCATTTCAGTCTGAGATGCCCCCCGTCGAA
438211 GGCAAGGCAG
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.20, C:0.30, G:0.17, T:0.32
Consensus pattern (127 bp):
TGCTACTTCCGCCTTTGCTCCTTCTATGTGCGTGGATATCTTCTACTATTGGATTCACTATTCCG
AAAGCCCATCTTCTTTCAAAGGCAAAAGCCCGTCATTTCAGTCTGAGATGCCCCCCGTCGAA
Left flanking sequence: Indices 437457 -- 437956
GAAACCGCTTGCCATAACCGGATTAGGGAAAGGAAGTCCCAAGAGTGAGGGGCTTTGAAGATATG
GGGCAATTAAATGATTGCACTAGATTAGTTGAAAGCCAGACTGACCGATTTCAGTAAGAGCAAAT
TCAATAGCAAAGGATTCTAAACCTTCCCTTCTACTGCCAACCATGCTTCCTCTTCTCGACAGATG
CTTGATTCAGGATAGCTGTAGAAAGACCATATCCTGACATCAGGCATATTATTGAAGCAGCCTTT
ACGCTACACATACTTCTAATGCCAGGAGAGCGTCGAATCCGTCTCTGTTAACTCATGTCTACTTC
TCTTTTTGTAAGAAGAACATTGGCCTAAATGCCATTTTCCTTCTACGAGGATTAGGGGTCCCTTC
CGCTAACACAAGGCAAGACCGTCTTTTTGGCATCAATCATCAAATCAGGCAAAGATTCATGCACA
CCCCCCAGAAATAGTAAATGGCCGTTCTTCAGCTGCTTCCTCCTT
Right flanking sequence: Indices 438211 -- 438710
GGCAAGGCAGATCTTTGGACATTCAAAGAAGAGTTTGTCCCTTAAGATCAGACAAGAAAGAAGCC
GATTCTGTTTGCGGGAAAGCAGAGGATTTGCGACCTGTTAATGTACGAGCTAGGCTTGAACCGCT
TAGGCTCTTTGCAAGAGTAGGCGGCTTATGTCATTCTCTTTTTCCTCTTCTGCCTTTTATTTTTA
TAAGGTGTGCACGTGAAAAGGAAGATTCTATAAGAAGGACATCCCTTGTGTACGAACTAAGGCTA
TTCAAAGCATCTCACAATAAAACTCCCCTTAGCCTGCTAACTATTATACAGTCAACCCATGCCTT
TTACAATTGGATTCTTTAACACCACCTAAAACATAGGAAAGGTCACACCAAGGGAAGCAAGAACT
CTGGCAAGCATGGTAGCAGTCAAAGGCTTGAAAGCATGCCCAATCCAAGCTGGCCCTCGGTCTCA
ACACTTTCTTTATCAGAAGCTGAAAGCGTAAGTAATAGAAGTATC
Found at i:467801 original size:127 final size:127
Alignment explanation
Indices: 467638--467895 Score: 516
Period size: 127 Copynumber: 2.0 Consensus size: 127
467628 ATTCGGATTA
467638 ATTTTTAGGGATAGATATTACCTCTCTCCTTCCCCGTTCAAACAAATTGAAATGATTGAAGTTTT
1 ATTTTTAGGGATAGATATTACCTCTCTCCTTCCCCGTTCAAACAAATTGAAATGATTGAAGTTTT
467703 TCTATTTGGAATCGTGTTAGGTCTAATTCCTATTACTTTGGCTGGATTATTTGTAACTGCAT
66 TCTATTTGGAATCGTGTTAGGTCTAATTCCTATTACTTTGGCTGGATTATTTGTAACTGCAT
467765 ATTTTTAGGGATAGATATTACCTCTCTCCTTCCCCGTTCAAACAAATTGAAATGATTGAAGTTTT
1 ATTTTTAGGGATAGATATTACCTCTCTCCTTCCCCGTTCAAACAAATTGAAATGATTGAAGTTTT
467830 TCTATTTGGAATCGTGTTAGGTCTAATTCCTATTACTTTGGCTGGATTATTTGTAACTGCAT
66 TCTATTTGGAATCGTGTTAGGTCTAATTCCTATTACTTTGGCTGGATTATTTGTAACTGCAT
467892 ATTT
1 ATTT
467896 ACAATACAGA
Statistics
Matches: 131, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 131 1.00
ACGTcount: A:0.25, C:0.16, G:0.16, T:0.42
Consensus pattern (127 bp):
ATTTTTAGGGATAGATATTACCTCTCTCCTTCCCCGTTCAAACAAATTGAAATGATTGAAGTTTT
TCTATTTGGAATCGTGTTAGGTCTAATTCCTATTACTTTGGCTGGATTATTTGTAACTGCAT
Left flanking sequence: Indices 467138 -- 467637
TTTTGAATGAACGACACGGTTCTTTTTATTTTATTAGTTTACTCAAGAGTTGTTCAATGCATCTG
TTGATTCGGAATCATGGGTAGATGTCACAGATGAGAAATCGATTTCTTTTCTATCTCTGTCACTC
TATCTTTGTTAGTGCCGTCTATAATGATATAATGATAATGATTGATAAATCAAAAACTTTCAATG
GTCTTTTTGGTTATTCTTGTATCTTTCAAAAATAGAAACTAGGTAAGTGTTTTATAACCATATGT
ATGTATAAAAAGAACATATTAAATTTAGCCCCCTTATGCCTACTATAATTAGTTATTTCGGTTTT
CTACTAGCGGCTTTAACTATAACTTCAATTCTATTTATTGGTCTGAGCAAGATACGACTTATTTG
AAATGAGCAATTCATAAAAAAGAAAGATTTCGGTGGGATTCCGTGTATTCTATAGTTCCTTATCC
TGTCAATTGCCAATTCTTGGTCATTGATATGGGCAATTCGGATTA
Right flanking sequence: Indices 467896 -- 468395
ACAATACAGACGCGGTGATCAGTTGGACTTTTGATTACCTTTGATTAATTATCTTTTTTTTTATT
GACTTCCTCCTTTCTTTAATCTGCAGGGGGTCAAAGTCAGATTGTTAAGTTAGTGAAGTTATTTC
GGTGTAATTCGACCTAACAAGAACGGAATCACGCTCTGTAGGATTTGAACCTACGACATCGGGTT
TTGGAGACCCGCGTTCTACCGAACTGAACTAAGAGCGCTTTCTTATTACATTTCTTATCACAATA
GATAAGACTGTAAAGAAAAGGATTCGTTTTGTAACCTACCAATAGATCTTGCATATACTATTATA
TATAGTATCGTAAAAGATTATTATGTCCATAATCGATCTCAATTGATCCATACTTACTGCTCTGC
TCATAAGATAAGTTCAGAAGAGAAGTAATAGGTAGGGATGACAGGATTTGAACCCGTGACATTTT
GTACCCAAAACAAACGCGCTACCAAGCTGCGCTACATCCCTTTCA
Found at i:468529 original size:127 final size:127
Alignment explanation
Indices: 468303--468556 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
468293 ATAAGTTCAG
468303 AAGAGAAGTAATAGGTAGGGATGACAGGATTTGAACCCGTGACATTTTGTACCCAAAACAAACGC
1 AAGAGAAGTAATAGGTAGGGATGACAGGATTTGAACCCGTGACATTTTGTACCCAAAACAAACGC
468368 GCTACCAAGCTGCGCTACATCCCTTTCAATTGATCGACAGTGTCATTGTAGAGAATCCCTGT
66 GCTACCAAGCTGCGCTACATCCCTTTCAATTGATCGACAGTGTCATTGTAGAGAATCCCTGT
468430 AAGAGAAGTAATAGGTAGGGATGACAGGATTTGAACCCGTGACATTTTGTACCCAAAACAAACGC
1 AAGAGAAGTAATAGGTAGGGATGACAGGATTTGAACCCGTGACATTTTGTACCCAAAACAAACGC
468495 GCTACCAAGCTGCGCTACATCCCTTTCAATTGATCGACAGTGTCATTGTAGAGAATCCCTGT
66 GCTACCAAGCTGCGCTACATCCCTTTCAATTGATCGACAGTGTCATTGTAGAGAATCCCTGT
468557 CTTCTTTTCG
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.24
Consensus pattern (127 bp):
AAGAGAAGTAATAGGTAGGGATGACAGGATTTGAACCCGTGACATTTTGTACCCAAAACAAACGC
GCTACCAAGCTGCGCTACATCCCTTTCAATTGATCGACAGTGTCATTGTAGAGAATCCCTGT
Left flanking sequence: Indices 467803 -- 468302
CAAACAAATTGAAATGATTGAAGTTTTTCTATTTGGAATCGTGTTAGGTCTAATTCCTATTACTT
TGGCTGGATTATTTGTAACTGCATATTTACAATACAGACGCGGTGATCAGTTGGACTTTTGATTA
CCTTTGATTAATTATCTTTTTTTTTATTGACTTCCTCCTTTCTTTAATCTGCAGGGGGTCAAAGT
CAGATTGTTAAGTTAGTGAAGTTATTTCGGTGTAATTCGACCTAACAAGAACGGAATCACGCTCT
GTAGGATTTGAACCTACGACATCGGGTTTTGGAGACCCGCGTTCTACCGAACTGAACTAAGAGCG
CTTTCTTATTACATTTCTTATCACAATAGATAAGACTGTAAAGAAAAGGATTCGTTTTGTAACCT
ACCAATAGATCTTGCATATACTATTATATATAGTATCGTAAAAGATTATTATGTCCATAATCGAT
CTCAATTGATCCATACTTACTGCTCTGCTCATAAGATAAGTTCAG
Right flanking sequence: Indices 468557 -- 469056
CTTCTTTTCGACATCGTTATTTCCTCCATTGATATACACAATTTATCTTGCCATTTCTTCTTTTT
TTTTTTGGTCTCATATCATATAACATAGAATACTACTAAACCTATATATATATTCTTTATTAACC
TATATATATGAAGAATATATATATATAATGATGTAAACGTAAAAAAAAATGCATATTTTTTTTTC
GGGAATGTTCAGGAAAGGGACGTATTTTTCTGTTTAAAAGGATAATATTATCTACCAGATCATTG
TACATTTCAGTTTGAATTAGGGATTCTGCGTACAAATAACAAATACAAGTAGTCTTTAATTACAT
ATACATTTGATCATATATGTATTACTATTATGTATTACAATAAAGAAGGAGGATTTTCAATGCGA
GATCTAAAAACATATCTCTCCGCAGCACCGGTACTAAGTACTTTAGTAGTCTTTAATTACATATA
CATTTGATCATATATGTATTACTATTATGTATTACAATAAAGAAG
Found at i:469246 original size:127 final size:127
Alignment explanation
Indices: 468869--469251 Score: 741
Period size: 127 Copynumber: 3.0 Consensus size: 127
468859 ATACAAGTAG
468869 TCTTTAATTACATATACATTTGATCATATATGTATTACTATTATGTATTACAATAAAGAAGGAGG
1 TCTTTAATTACATATACATTTGATCATATATGTATTACTATTATGTATTACAATAAAGAAGGAGG
*
468934 ATTTTCAATGCGAGATCTAAAAACATATCTCTCCGCAGCACCGGTACTAAGTACTTTAGTAG-
66 ATTTTCAATGCGAGATCTAAAAACATATCTCTCCGCAGCACCGGTACTAAGTACTTTA-TGGT
468996 TCTTTAATTACATATACATTTGATCATATATGTATTACTATTATGTATTACAATAAAGAAGGAGG
1 TCTTTAATTACATATACATTTGATCATATATGTATTACTATTATGTATTACAATAAAGAAGGAGG
469061 ATTTTCAATGCGAGATCTAAAAACATATCTCTCCGCAGCACCGGTACTAAGTACTTTATGGT
66 ATTTTCAATGCGAGATCTAAAAACATATCTCTCCGCAGCACCGGTACTAAGTACTTTATGGT
469123 TCTTTAATTACATATACATTTGATCATATATGTATTACTATTATGTATTACAATAAAGAAGGAGG
1 TCTTTAATTACATATACATTTGATCATATATGTATTACTATTATGTATTACAATAAAGAAGGAGG
469188 ATTTTCAATGCGAGATCTAAAAACATATCTCTCCGCAGCACCGGTACTAAGTACTTTATGGT
66 ATTTTCAATGCGAGATCTAAAAACATATCTCTCCGCAGCACCGGTACTAAGTACTTTATGGT
469250 TC
1 TC
469252 GGGTTTTTGG
Statistics
Matches: 254, Mismatches: 1, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
126 2 0.01
127 252 0.99
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (127 bp):
TCTTTAATTACATATACATTTGATCATATATGTATTACTATTATGTATTACAATAAAGAAGGAGG
ATTTTCAATGCGAGATCTAAAAACATATCTCTCCGCAGCACCGGTACTAAGTACTTTATGGT
Left flanking sequence: Indices 468369 -- 468868
CTACCAAGCTGCGCTACATCCCTTTCAATTGATCGACAGTGTCATTGTAGAGAATCCCTGTAAGA
GAAGTAATAGGTAGGGATGACAGGATTTGAACCCGTGACATTTTGTACCCAAAACAAACGCGCTA
CCAAGCTGCGCTACATCCCTTTCAATTGATCGACAGTGTCATTGTAGAGAATCCCTGTCTTCTTT
TCGACATCGTTATTTCCTCCATTGATATACACAATTTATCTTGCCATTTCTTCTTTTTTTTTTTG
GTCTCATATCATATAACATAGAATACTACTAAACCTATATATATATTCTTTATTAACCTATATAT
ATGAAGAATATATATATATAATGATGTAAACGTAAAAAAAAATGCATATTTTTTTTTCGGGAATG
TTCAGGAAAGGGACGTATTTTTCTGTTTAAAAGGATAATATTATCTACCAGATCATTGTACATTT
CAGTTTGAATTAGGGATTCTGCGTACAAATAACAAATACAAGTAG
Right flanking sequence: Indices 469252 -- 469751
GGGTTTTTGGCGGGTTTATTGATCGAGATCAATCGCTTTTTCCCCGATGCGTTGACATTCCCTTT
TTTTTCATTCTAGTTATTGACATGGGAAGGAGTGAAGAAAATAAAAGATACAATCAAATATCTGC
CTGCCCCCCTCCCCCTCTTTTCTTTTCCGCACCAATCCTTATTTACTACTACATCTTTTTTTGGG
TGTATAGCTCAGTTGGTAGAGCATTGGGCTTTTAACCTAATGGTCGCAGGTTCAAGTCCTGCTAT
ACCCAAACCTACCTTACACTCTACTATGAGTAAGGGCGTTCAAAGATCACTCTTTGGCCTTTAGA
CTCGCTTCGGCGACTTCGCCCTTTAAGTGACAAGGGGGGTGAGGTAAGGAGTAGTATAAGAGTGC
CAAACCTACCTTACACTCTACTATGAGTAAGGGCGTTCAAAGATCACTCTTTGGCCTTTAGACTC
GCTTCGGCGACTTCGCCCTTTAAGTGACAAGGGGGGTGAGGTAAG
Found at i:469895 original size:127 final size:127
Alignment explanation
Indices: 469524--469907 Score: 700
Period size: 127 Copynumber: 3.0 Consensus size: 127
469514 CCAAACCTAC
469524 CTTACACTCTACTATGAGTAAGGGCGTTCAAAGATCACTCTTTGGCCTTTAGACTCGCTTCGGCG
1 CTTACACTCTACTATGAGTAAGGGCGTTCAAAGATCACTCTTTGGCCTTTAGACTCGCTTCGGCG
*** *
469589 ACTTCGCCCTTTAAGTGACAAGGGGGGTGAGGTAAGGAGTAGTATAAGAGT-GC-CAAACCTAC
66 ACTTCGCCCTTTAAGTGACAAGGGGGGTGAGGTAAGGAGTAGTATAAGAGTGGCTC-GGTC-AT
469651 CTTACACTCTACTATGAGTAAGGGCGTTCAAAGATCACTCTTTGGCCTTTAGACTCGCTTCGGCG
1 CTTACACTCTACTATGAGTAAGGGCGTTCAAAGATCACTCTTTGGCCTTTAGACTCGCTTCGGCG
469716 ACTTCGCCCTTTAAGTGACAAGGGGGGTGAGGTAAGGAGTAGTATAAGAGTGGCTCGGTCAT
66 ACTTCGCCCTTTAAGTGACAAGGGGGGTGAGGTAAGGAGTAGTATAAGAGTGGCTCGGTCAT
469778 CTTACACTCTACTATGAGTAAGGGCGTTCAAAGATCACTCTTTGGCCTTTAGACTCGCTTCGGCG
1 CTTACACTCTACTATGAGTAAGGGCGTTCAAAGATCACTCTTTGGCCTTTAGACTCGCTTCGGCG
469843 ACTTCGCCCTTTAAGTGACAAGGGGGGTGAGGTAAGGAGTAGTATAAGAGTGGCTCGGTCAT
66 ACTTCGCCCTTTAAGTGACAAGGGGGGTGAGGTAAGGAGTAGTATAAGAGTGGCTCGGTCAT
469905 CTT
1 CTT
469908 TTAGTCCCTG
Statistics
Matches: 251, Mismatches: 4, Indels: 4
0.97 0.02 0.02
Matches are distributed among these distances:
127 247 0.98
128 3 0.01
129 1 0.00
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (127 bp):
CTTACACTCTACTATGAGTAAGGGCGTTCAAAGATCACTCTTTGGCCTTTAGACTCGCTTCGGCG
ACTTCGCCCTTTAAGTGACAAGGGGGGTGAGGTAAGGAGTAGTATAAGAGTGGCTCGGTCAT
Left flanking sequence: Indices 469024 -- 469523
TATGTATTACTATTATGTATTACAATAAAGAAGGAGGATTTTCAATGCGAGATCTAAAAACATAT
CTCTCCGCAGCACCGGTACTAAGTACTTTATGGTTCTTTAATTACATATACATTTGATCATATAT
GTATTACTATTATGTATTACAATAAAGAAGGAGGATTTTCAATGCGAGATCTAAAAACATATCTC
TCCGCAGCACCGGTACTAAGTACTTTATGGTTCGGGTTTTTGGCGGGTTTATTGATCGAGATCAA
TCGCTTTTTCCCCGATGCGTTGACATTCCCTTTTTTTTCATTCTAGTTATTGACATGGGAAGGAG
TGAAGAAAATAAAAGATACAATCAAATATCTGCCTGCCCCCCTCCCCCTCTTTTCTTTTCCGCAC
CAATCCTTATTTACTACTACATCTTTTTTTGGGTGTATAGCTCAGTTGGTAGAGCATTGGGCTTT
TAACCTAATGGTCGCAGGTTCAAGTCCTGCTATACCCAAACCTAC
Right flanking sequence: Indices 469908 -- 470407
TTAGTCCCTGAAATGCGAGACTTCGACCTGTTGCAAACCCAGCCCCAGTCTAAGTAAGTTAAGGG
GGTTGGTTGAGCTCAGGAAAGAATTTCAGGAACTCATTGAGGCCTATTTATATTCCAGCCTCCAA
GGCAGTTTTTCCCTATCTTGCTGGGGAAAAGGTTGGGGAGCCCCTGTTTTATTCCAGAAGAAGCG
GGAGCCTTGTGCATTGATTATCGGGCGCTCAACAAGGTAACCTAACCATCAAGAACAAGTATCCA
CTTTGATTGCAGACTTCTTCGCCCTAATCAATAAGCGCGAGATACTTCTCGAAGTTGGATCTACG
GTCGGGCTACTACCAAGTGCGTATCGCGGAAGGAGACGAGCCAAAGACGACCTGTGTGACAAGCA
AGCAACCTTACTAATAAAGGGGCGTTTGATTTGGTTATGCCTTTTGGACTCACCAATGCCCCTGC
CACGTTCTGCACCCTCCACAATGAGCTATTCCACCCGTACTTAGA
Found at i:485061 original size:127 final size:127
Alignment explanation
Indices: 484835--485088 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
484825 GATGAACGCA
484835 GGCGGCATGCTTAACACATGCAAGTCGGACGGGAAGTGGTGTTTCCAGTGGCGGACGGGTGAGTA
1 GGCGGCATGCTTAACACATGCAAGTCGGACGGGAAGTGGTGTTTCCAGTGGCGGACGGGTGAGTA
484900 ACGCGTAAGAACCTGCCCTTGGGAGGGGAACAACAGCTGGAAACGGCTGCTAATACCCCGTG
66 ACGCGTAAGAACCTGCCCTTGGGAGGGGAACAACAGCTGGAAACGGCTGCTAATACCCCGTG
484962 GGCGGCATGCTTAACACATGCAAGTCGGACGGGAAGTGGTGTTTCCAGTGGCGGACGGGTGAGTA
1 GGCGGCATGCTTAACACATGCAAGTCGGACGGGAAGTGGTGTTTCCAGTGGCGGACGGGTGAGTA
485027 ACGCGTAAGAACCTGCCCTTGGGAGGGGAACAACAGCTGGAAACGGCTGCTAATACCCCGTG
66 ACGCGTAAGAACCTGCCCTTGGGAGGGGAACAACAGCTGGAAACGGCTGCTAATACCCCGTG
485089 TAGGCTGAGG
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.24, C:0.23, G:0.35, T:0.17
Consensus pattern (127 bp):
GGCGGCATGCTTAACACATGCAAGTCGGACGGGAAGTGGTGTTTCCAGTGGCGGACGGGTGAGTA
ACGCGTAAGAACCTGCCCTTGGGAGGGGAACAACAGCTGGAAACGGCTGCTAATACCCCGTG
Left flanking sequence: Indices 484335 -- 484834
GGAAAGCATGCGATTTCTAGATAAAATAGAAGACCCCTAGCGGTCGTTCTGAGAAGTTCTTCATT
GATGTTCCACGTTCGACCACGACGATGGGTTGCCGCGAGAGGTAGAGCCGAATGCGCCCCATTTC
CTCCCCTACTGAAAAGGGGATAATTTATCCAGTGAGCTTTTTTTGAGCTAAAGCGCAATAAACTC
ATTTTAAAAATTATCTTTTTTTTATCCATTTTGAAGTCCCAAAAGGGATCATTTCAAGACATCCT
AGCCCTCGAGGAGTCATGGCAGGTACAAATATTCCTTGGCTGATATTGGTTTTTCAGTGTGTCAA
TCGGGCACACATAGTTCCGCTCCGATCCACTGGTCGACAAATGCGAAATCAATGCATTCTTTGAC
ATGTGTGGAAGCTGAGGAATTTGCTCTACCGTTGGCTCGTAACCAGGGTGACGAAGAGCTATAAA
TCTTCCTCGAAAAAGAAGGTTTGATCCTGGCTCAGGATGAACGCA
Right flanking sequence: Indices 485089 -- 485588
TAGGCTGAGGAGCAAAAGGAGGAATCCGCCCGAGGAGGGGCTCGCGTCTGATTAGCTAGTTGGTG
AGGCAATGGCTTACCAAGGCGATGATCAGTAGTTGGTCCGAGAGGATGATCAGCCACACTGGGAC
TGAGACACGGCCCAGACTCCTACGGGGGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCT
GACGGAGCAATGCCGCGTGGAGGTAGAAGGCCCACGGGTCGTGAACTTCTTTTCCCGGAGAAGAA
GCAATGACGGTATCTCCTACGGGGGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGAC
GGAGCAATGCCGCGTGGAGGTAGAAGGCCCACGGGTCGTGAACTTCTTTTCCCGGAGAAGAAGCA
ATGACGGTATCCGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGAT
GCAAGCGTTATCCGGAATGATGGGGCGCAAAGCGTCTGTAGGTGG
Found at i:485461 original size:127 final size:127
Alignment explanation
Indices: 485235--485489 Score: 510
Period size: 127 Copynumber: 2.0 Consensus size: 127
485225 ACGGCCCAGA
485235 CTCCTACGGGGGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGC
1 CTCCTACGGGGGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGC
485300 GTGGAGGTAGAAGGCCCACGGGTCGTGAACTTCTTTTCCCGGAGAAGAAGCAATGACGGTAT
66 GTGGAGGTAGAAGGCCCACGGGTCGTGAACTTCTTTTCCCGGAGAAGAAGCAATGACGGTAT
485362 CTCCTACGGGGGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGC
1 CTCCTACGGGGGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGC
485427 GTGGAGGTAGAAGGCCCACGGGTCGTGAACTTCTTTTCCCGGAGAAGAAGCAATGACGGTAT
66 GTGGAGGTAGAAGGCCCACGGGTCGTGAACTTCTTTTCCCGGAGAAGAAGCAATGACGGTAT
485489 C
1 C
485490 CGGGGAATAA
Statistics
Matches: 128, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 128 1.00
ACGTcount: A:0.24, C:0.23, G:0.35, T:0.18
Consensus pattern (127 bp):
CTCCTACGGGGGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGC
GTGGAGGTAGAAGGCCCACGGGTCGTGAACTTCTTTTCCCGGAGAAGAAGCAATGACGGTAT
Left flanking sequence: Indices 484735 -- 485234
GCTGAGGAATTTGCTCTACCGTTGGCTCGTAACCAGGGTGACGAAGAGCTATAAATCTTCCTCGA
AAAAGAAGGTTTGATCCTGGCTCAGGATGAACGCAGGCGGCATGCTTAACACATGCAAGTCGGAC
GGGAAGTGGTGTTTCCAGTGGCGGACGGGTGAGTAACGCGTAAGAACCTGCCCTTGGGAGGGGAA
CAACAGCTGGAAACGGCTGCTAATACCCCGTGGGCGGCATGCTTAACACATGCAAGTCGGACGGG
AAGTGGTGTTTCCAGTGGCGGACGGGTGAGTAACGCGTAAGAACCTGCCCTTGGGAGGGGAACAA
CAGCTGGAAACGGCTGCTAATACCCCGTGTAGGCTGAGGAGCAAAAGGAGGAATCCGCCCGAGGA
GGGGCTCGCGTCTGATTAGCTAGTTGGTGAGGCAATGGCTTACCAAGGCGATGATCAGTAGTTGG
TCCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGA
Right flanking sequence: Indices 485490 -- 485989
CGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAAGCGTTAT
CCGGAATGATGGGGCGCAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAATCCCAGGGCT
CAACCCTGGACAAGCGGTGGAGCGTGTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGC
TTGACATGCCGCGAATCCTCTTGAAGGAGAGGGGTGCCCTCGGGAACGCGGACACAGGTGGTGCA
TGGCTGTCGTCAGCTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGT
TTAGTTGCCGCCGTTGAGTTTGGAACCCTGAACAGATCGGGAACGCGGACACAGGTGGTGCATGG
CTGTCGTCAGCTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTA
GTTGCCGCCGTTGAGTTTGGAACCCTGAACAGACTGCCGGTGATA
Found at i:485950 original size:127 final size:128
Alignment explanation
Indices: 485723--486106 Score: 622
Period size: 127 Copynumber: 3.0 Consensus size: 128
485713 GAGGGGTGCC
485723 CTCGGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCGTAAGGTGTTGGGTTAA
1 CTCGGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCGTAAGGTGTTGGGTTAA
485788 GTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGCCGCCGTTGAGTTTGGAACCCTGAACAGA
66 GTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGCCGCCGTTGAGTTTGGAACCCTGAACAGA
485851 -TCGGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCGTAAGGTGTTGGGTTAA
1 CTCGGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCGTAAGGTGTTGGGTTAA
485915 GTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGCCGCCGTTGAGTTTGGAACCCTGAACAGA
66 GTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGCCGCCGTTGAGTTTGGAACCCTGAACAGA
* * * *
485978 CTGCCGGTGATAAGCCGG----AGGAAGGTG-A-GGATGAC-TCAGCTCGTGCCGTAAGGTGTTG
1 CT--CGG-GA-ACG-CGGACACAGG-TGGTGCATGGCTGTCGTCAGCTCGTGCCGTAAGGTGTTG
486036 GGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGCCGCCGTTGAGTTTGGAACCCTGAA
60 GGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGCCGCCGTTGAGTTTGGAACCCTGAA
486101 CAGA
125 CAGA
486105 CT
1 CT
486107 GCCGGTGATA
Statistics
Matches: 245, Mismatches: 4, Indels: 15
0.93 0.02 0.06
Matches are distributed among these distances:
127 221 0.90
128 6 0.02
129 4 0.02
130 7 0.03
131 2 0.01
132 2 0.01
133 3 0.01
ACGTcount: A:0.20, C:0.25, G:0.33, T:0.23
Consensus pattern (128 bp):
CTCGGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCGTAAGGTGTTGGGTTAA
GTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGCCGCCGTTGAGTTTGGAACCCTGAACAGA
Left flanking sequence: Indices 485223 -- 485722
ACACGGCCCAGACTCCTACGGGGGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACG
GAGCAATGCCGCGTGGAGGTAGAAGGCCCACGGGTCGTGAACTTCTTTTCCCGGAGAAGAAGCAA
TGACGGTATCTCCTACGGGGGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAG
CAATGCCGCGTGGAGGTAGAAGGCCCACGGGTCGTGAACTTCTTTTCCCGGAGAAGAAGCAATGA
CGGTATCCGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGCAA
GCGTTATCCGGAATGATGGGGCGCAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAATCC
CAGGGCTCAACCCTGGACAAGCGGTGGAGCGTGTGGTTTAATTCGATGCAAAGCGAAGAACCTTA
CCAGGGCTTGACATGCCGCGAATCCTCTTGAAGGAGAGGGGTGCC
Right flanking sequence: Indices 486107 -- 486606
GCCGGTGATAAGCCGGAGGAAGGTGAGGATGACTTCTTCACTCTCAGATGGCGTTTAACCTATAA
GAATTTAGTCTTCGACTGGGGTGATGACTTGCTCCTCTAGCTTTCATACCTGCTCGAGTGATGCA
ACGTGGCATCATGGCAGGTCACACCGTCATTGGTGTGATATTGCTCTGACTTCCACACTTTCTTC
AGATAGGACGCTTCTATTTGAATGAAGACCGGGTTTGACAAACCACGGCGCCACCCCATGGCTTT
ATCCCATTTAGGAAAGTGCAGTTGTATTTTCTGTTGACATTTGATCGGCCTTATTTTAGGTCCCA
TCGCTACCAACATTATACAACTGCTGGGCGGGAAGGATTTAAATGAAACCCTTCCGGTGACCAAG
GCGGTAGGTGGATTATGACCAAAATACCCTTCCCCTTGTTCATACACTAGTTGTCTTTCACCAGA
CCTGCAATCGCGGCTATCTGCCCGTGGTGAGTTTTAGAATGAAAA
Found at i:500950 original size:127 final size:127
Alignment explanation
Indices: 500724--500978 Score: 510
Period size: 127 Copynumber: 2.0 Consensus size: 127
500714 CGGGAACGAT
500724 ACGCTTTGGTTACCGGCGAACGCTTCCAAAGGCGACCCTCTCGAGTTTCCTAGATTGAAGTAGCC
1 ACGCTTTGGTTACCGGCGAACGCTTCCAAAGGCGACCCTCTCGAGTTTCCTAGATTGAAGTAGCC
500789 TTTCGTCGCCCTACCAAACGAAAGAAGTCACTATCAAACAGCTCGCCCTACTGAAGTACCAA
66 TTTCGTCGCCCTACCAAACGAAAGAAGTCACTATCAAACAGCTCGCCCTACTGAAGTACCAA
500851 ACGCTTTGGTTACCGGCGAACGCTTCCAAAGGCGACCCTCTCGAGTTTCCTAGATTGAAGTAGCC
1 ACGCTTTGGTTACCGGCGAACGCTTCCAAAGGCGACCCTCTCGAGTTTCCTAGATTGAAGTAGCC
500916 TTTCGTCGCCCTACCAAACGAAAGAAGTCACTATCAAACAGCTCGCCCTACTGAAGTACCAA
66 TTTCGTCGCCCTACCAAACGAAAGAAGTCACTATCAAACAGCTCGCCCTACTGAAGTACCAA
500978 A
1 A
500979 GGTGCGCTCC
Statistics
Matches: 128, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 128 1.00
ACGTcount: A:0.28, C:0.31, G:0.20, T:0.22
Consensus pattern (127 bp):
ACGCTTTGGTTACCGGCGAACGCTTCCAAAGGCGACCCTCTCGAGTTTCCTAGATTGAAGTAGCC
TTTCGTCGCCCTACCAAACGAAAGAAGTCACTATCAAACAGCTCGCCCTACTGAAGTACCAA
Left flanking sequence: Indices 500224 -- 500723
CTTACTTGAGCAGTGCGGGAGACCGGGGAATGGGTCGAGTAAACTCCCCTGGGGCCGGAAAAATA
ACAGACGAAGCTTTACTTAGATAGGGTGATTGGTATTTCTTTTTTCTTAGTGATTGGAAAGGAGG
GGTATAAAGGGAAGGCAGAGGTAGTACTTCGAATGGCGAAGAGAGGCGGGGAAGGAATGGGAAAT
CGTCAAGGATAACTTCTTTGTTGGCGAAACGAAGGGCGCCGAAGGCGCCAGTGATTCTCTGAGCC
GGTCTGGATTTCCAACGCCTCGGGAAACTGGTCGAGATAGATGACAGCACCTTTTTTTCCCCTCT
TCCTTACCGGGAGGGCAATCTTCTCTTATGGCCTTCACCTCCCGCCCGGCCCGGAAATAGAACCC
CTTCTGATTCATTCATTTCTGCAAGCAGGGGGGATCCAGAGCTAAGCCCCCTTCTATTGCATAAC
CTAAAAAAGCTATAAGCAAAGTACCAAAGTGGTTGCGGGAACGAT
Right flanking sequence: Indices 500979 -- 501478
GGTGCGCTCCGCCCGATGACTAAGAAATGGGTTTGCGCTTGAATTGAAGTGATGAGGTCGCAAAG
AGGGAAGTAGGGCTCCTATTGACTAAAGGTTGGTTCTTCGGTTTCCTTTAGAATGAAAGTAGCTA
TGAAGCCCCTACTACTTACTTTGTTTGATTCAAAAGGCGAACAGCGTGATGAGGTCGCAAAGAGG
GAAGTAGGGCTCCTATTGACTAAAGGTTGGTTCTTCGGTTTCCTTTAGAATGAAAGTAGCTATGA
AGCCCCTACTACTTACTTTGTTTGATTCAAAAGGCGAACAGCTTTCAATACTAGTTGTTACGTTA
CGCTGCCATTTTTCCAATATCATTGAATAGCATGGCCTGGGGATAAGGTAACTCAAGTGGGAGAG
CCGTGTTATGGGTGACCTTATTGCACGGTTCAGAGAGCACTTGTGTATGTGATGCAAGTGAACGT
GTACGAAAAAGCTGTATCTAGGGTGAGTTCTTCGTTCCGTCGTCG
Found at i:501253 original size:127 final size:127
Alignment explanation
Indices: 501027--501280 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
501017 TTGAATTGAA
501027 GTGATGAGGTCGCAAAGAGGGAAGTAGGGCTCCTATTGACTAAAGGTTGGTTCTTCGGTTTCCTT
1 GTGATGAGGTCGCAAAGAGGGAAGTAGGGCTCCTATTGACTAAAGGTTGGTTCTTCGGTTTCCTT
501092 TAGAATGAAAGTAGCTATGAAGCCCCTACTACTTACTTTGTTTGATTCAAAAGGCGAACAGC
66 TAGAATGAAAGTAGCTATGAAGCCCCTACTACTTACTTTGTTTGATTCAAAAGGCGAACAGC
501154 GTGATGAGGTCGCAAAGAGGGAAGTAGGGCTCCTATTGACTAAAGGTTGGTTCTTCGGTTTCCTT
1 GTGATGAGGTCGCAAAGAGGGAAGTAGGGCTCCTATTGACTAAAGGTTGGTTCTTCGGTTTCCTT
501219 TAGAATGAAAGTAGCTATGAAGCCCCTACTACTTACTTTGTTTGATTCAAAAGGCGAACAGC
66 TAGAATGAAAGTAGCTATGAAGCCCCTACTACTTACTTTGTTTGATTCAAAAGGCGAACAGC
501281 TTTCAATACT
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (127 bp):
GTGATGAGGTCGCAAAGAGGGAAGTAGGGCTCCTATTGACTAAAGGTTGGTTCTTCGGTTTCCTT
TAGAATGAAAGTAGCTATGAAGCCCCTACTACTTACTTTGTTTGATTCAAAAGGCGAACAGC
Left flanking sequence: Indices 500527 -- 501026
ACAGCACCTTTTTTTCCCCTCTTCCTTACCGGGAGGGCAATCTTCTCTTATGGCCTTCACCTCCC
GCCCGGCCCGGAAATAGAACCCCTTCTGATTCATTCATTTCTGCAAGCAGGGGGGATCCAGAGCT
AAGCCCCCTTCTATTGCATAACCTAAAAAAGCTATAAGCAAAGTACCAAAGTGGTTGCGGGAACG
ATACGCTTTGGTTACCGGCGAACGCTTCCAAAGGCGACCCTCTCGAGTTTCCTAGATTGAAGTAG
CCTTTCGTCGCCCTACCAAACGAAAGAAGTCACTATCAAACAGCTCGCCCTACTGAAGTACCAAA
CGCTTTGGTTACCGGCGAACGCTTCCAAAGGCGACCCTCTCGAGTTTCCTAGATTGAAGTAGCCT
TTCGTCGCCCTACCAAACGAAAGAAGTCACTATCAAACAGCTCGCCCTACTGAAGTACCAAAGGT
GCGCTCCGCCCGATGACTAAGAAATGGGTTTGCGCTTGAATTGAA
Right flanking sequence: Indices 501281 -- 501780
TTTCAATACTAGTTGTTACGTTACGCTGCCATTTTTCCAATATCATTGAATAGCATGGCCTGGGG
ATAAGGTAACTCAAGTGGGAGAGCCGTGTTATGGGTGACCTTATTGCACGGTTCAGAGAGCACTT
GTGTATGTGATGCAAGTGAACGTGTACGAAAAAGCTGTATCTAGGGTGAGTTCTTCGTTCCGTCG
TCGACCCTATCTATGTTTCTACGATGGCCCAAGAACACGCTCATTCTTCAGCCGTAGAGAGACTT
TTGAATTGCGAGGTACCATTACGAGCTCAATATATACGAGTGTTATTCCGTGAAATAACTCGAAT
TTCAAATCATTCACTTGCTTTAACTACTCATGCTATGGATGTGGGAGCATCAACTCCGTCCCTGT
GGGCTTCTGAGGAGCGGGAGAAATTGTTGGAATTCTATGAAAGAGTCTCGGGAGCCAGGATGCAT
GCCAGTTTCATACGACCGGGTGGAGTGGCACAAGATCTGCCTCTT
Found at i:507282 original size:22 final size:22
Alignment explanation
Indices: 507257--507307 Score: 93
Period size: 22 Copynumber: 2.3 Consensus size: 22
507247 TCGCAAGACA
507257 AAGAAGCTGCGATCACAACATG
1 AAGAAGCTGCGATCACAACATG
*
507279 AAGAAGTTGCGATCACAACATG
1 AAGAAGCTGCGATCACAACATG
507301 AAGAAGC
1 AAGAAGC
507308 AAAAAAGAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.43, C:0.20, G:0.24, T:0.14
Consensus pattern (22 bp):
AAGAAGCTGCGATCACAACATG
Left flanking sequence: Indices 506757 -- 507256
GGGGGAATAAATAATATGAATTGGAGGGTGGGTCCTTAACACCAAACTACCTTCTCTTCTAATCC
TGCTACGAAATATCGATTTTCAGGCGGTAAGGTTTTGAGCCAATCAAGTAAGCGAGTACCTGTAT
CCGTCCCTGCTGTCGCAGGTGATGAAGTAGTGGGAGTAAGAAAGGGTTAGTGAATGAAATTTCCT
TCAAACCTGTCAGTGTGAAATCAAGCTTCATAGTCAACAGAGTCAAACGGTGAAACGAAATCTCT
TTCATACAAATCTTATCTTATGCTTGCCCGAGGGGATAGTAACTTCTTAGAAAAGCAAGGACGGA
ACTCGTTTTCAAGCGGAATTCGAAGATTAGTCTTTCTCGCCTTTCTGCTACCTCAGAAGAGGAAA
TTCCATTTTCAAAATCAAGATGAAGCAGTCCAATCCTGAATGAGATCTTTTGGGCTCGACTCGAG
AGGATCAAACAGAAGACAGCGCCATGTTAATGCGATCGCAAGACA
Right flanking sequence: Indices 507308 -- 507807
AAAAAAGAGGGTCTTTCATCACTTTTTTTTCTAAGGTAAAATAGACTAGTAAAATTCAAGTGGAG
ATTGAACGCTAGAAGGCGCAGATAGGAACTGCGAGCACGGATTATAATCAGAAGGCGAGCGAGCT
GTGTTCACTTAAAGCTTCACTTCAGGTTTTGTAGTAGGAAATGCTCCAAGGAAAGAGATTTGAAG
ACGTAGCGCAGTCTGTAATGAGAGCGGGATGGGGACGGAAAGGGTTCCCCCTCTCCTGTAGTAGC
GAACCAGTCAATTTGGAATTTAAGAAACCGTAGGCCCAACGACAAGTCCTCAGCAAACATAAAGA
CGTGAACGACCAACGGTAAGAGCGAGTGAACTAGTCAAGAACTCAAATCCGTAATGCGCTTAAGG
CATTGATAATCCAAGTCTTAAGTGCGACCCACTTCAATGGATCATCTCGGGCAATGTTCTAATAT
ATGGTTCTAATTTTCGAACAAAAAATACCTTATAAAGAGCTCACT
Found at i:516995 original size:39 final size:39
Alignment explanation
Indices: 516940--517018 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
516930 CCCATCCTTC
*
516940 AATATCATGATTGGGTCGACCAGGCCAGATCATGAATGA
1 AATATCATGATCGGGTCGACCAGGCCAGATCATGAATGA
*
516979 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
1 AATATCATGATCGGGTCGACCAGGCCAGATCATGAATGA
517018 A
1 A
517019 TAGAAAATCG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.33, C:0.19, G:0.27, T:0.22
Consensus pattern (39 bp):
AATATCATGATCGGGTCGACCAGGCCAGATCATGAATGA
Left flanking sequence: Indices 516440 -- 516939
ACAGGCATTGTTCCTAATTGGAGCTATGAATCCTCTATAAAAGGTCGAATACAGTACCTTGAAAA
TGCAAAGTGCATTTTTCTTCTTGATAAAGAGAAGGGGGAATATTGGACTGACATAAAAACTGCAC
TGAATCAAGCTTCCTCTCAGAGGGAGTACAACCGATTACTAGATTTTGAAAATAATGATCTCAGG
ATCCGGGAGCTGAAACATGAGTGTTATTCTCTGTTTCAACAAGTGCTTTCTGAGAATCCGGCCTT
GGCCGAAAATGCGGCCTACAATCCTAAATCAGCCTTTGTCGATTTCCTTGACGAAAGTCGGAGGG
AGCTGGAGACCGAACTCCAGTCGACTCTTGTCGACACCCACGAGATGGAATTTAAGAATTCCATC
GCCAAGGATATCACAAAGCATGGCCCTCCTTCTTACTACGTGAAAACTATACTGGGCTATTTTGA
CAAATAACGAGATCCGGAGTTTTTCGAGAAAGGGTCCCATCCTTC
Right flanking sequence: Indices 517019 -- 517518
TAGAAAATCGAAAACGTACATAGTTGTTCCAGCTGAAATACTTGGAATAATTCTACCACTTCTAC
TAGGAGTAGCCTTTTTAGTGCTAGCTGAACGTAAAGTAATGGCTTTTGTGCAACGTCGAAAGGGT
CCTGATGTAGTGGGATCGTTCGGATTGTTACAACCTCTAGCAGATGGTTCGAAATTGATTCTAAA
AGAACCTATTTCACCAAGTAGTGCTAATTTCTCCCTTTTTAGAATGGCTCCAGTGGCTACATTTA
TGTTAAGTCTGGTCGCTCGGGCCGTTGTACCTTTTGATTATGGTATGGTATTGTCAGATCCGAAC
ATAGGGCTACTTTATTTGTTTGCCATATCTTCGCTAGGTGTTTATGGAATTATTACAGCGGGTCG
GTCTAGTAATTAGGGGGCGGCCGTTCGGTCGCCTATGATACTTAGGACCAATAGGTCAAAAATGG
GTTTGTGTCGCAGGTGTTGAACGATCTACTCTACATAGGTGTGGG
Found at i:517700 original size:19 final size:20
Alignment explanation
Indices: 517676--517732 Score: 64
Period size: 19 Copynumber: 2.8 Consensus size: 20
517666 CAAGCTGGCC
*
517676 TATATATATAATAATAT-CT
1 TATATATATAATAATATAAT
517695 TATATATAGT-ATAATATAAAT
1 TATATATA-TAATAATAT-AAT
517716 TATATATAATAATAATA
1 TATATAT-ATAATAATA
517733 GATATAAATA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
19 15 0.47
20 1 0.03
21 9 0.28
22 7 0.22
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (20 bp):
TATATATATAATAATATAAT
Left flanking sequence: Indices 517176 -- 517675
TTACAACCTCTAGCAGATGGTTCGAAATTGATTCTAAAAGAACCTATTTCACCAAGTAGTGCTAA
TTTCTCCCTTTTTAGAATGGCTCCAGTGGCTACATTTATGTTAAGTCTGGTCGCTCGGGCCGTTG
TACCTTTTGATTATGGTATGGTATTGTCAGATCCGAACATAGGGCTACTTTATTTGTTTGCCATA
TCTTCGCTAGGTGTTTATGGAATTATTACAGCGGGTCGGTCTAGTAATTAGGGGGCGGCCGTTCG
GTCGCCTATGATACTTAGGACCAATAGGTCAAAAATGGGTTTGTGTCGCAGGTGTTGAACGATCT
ACTCTACATAGGTGTGGGCTTACAGGGCTAGGGCTCATAAACCCTTTCTTTCATTCATCAATAGG
GCCCTGGTCGGTCACTTTTCCGGGCCGGGATCGATAAGTGGAAGTCATAAAAAAGAGATCTTTAT
CTTCGCACCTCAGATCAAGAGGAAGGGTAGCTTGTCAAGCTGGCC
Right flanking sequence: Indices 517733 -- 518232
GATATAAATAAAAAGATTCGTTTAACCGGCTGTTCTTCTTTGTCAACGCTACTAAGGACCTATAG
GTTCGCCTACTCGACTTATGAAAGATAATGAGAATGGGTTATTCAAAAAGGAAAAGGCGCTACTT
AGCCCTACATTAGTAGAAGTAAGCGGCTGAGTTAGCCTACTATACCCTAAAATACAATACATTAG
TAGGGTATAGTAGGCGAGCGAGTTAGCGAAGACGCTTAGGCTAATAGATAAGAGAGCGTCGGTGC
GTAGCCTTCATTCTACTACGCTACGCAAAGGTTACGAAGTCACTTAGCTCGACGTTAGGAGAGTC
AAGGGGGAACGCCATACCTACATAGAAGAACCGCTGTTCGCTGACTTTCTAAGGTCTAACGCTCC
CCTACTGAAAAGGGGCAAAGCCGCTTCGCACCACTGATAGACTACTTAAGATTCAATTCAAAAGG
CCCTACTTAGTTGACTGACAATGACAAACGAAACTAAGTAGGGCC
Found at i:527467 original size:127 final size:127
Alignment explanation
Indices: 527241--527494 Score: 508
Period size: 127 Copynumber: 2.0 Consensus size: 127
527231 CTACCGTTTC
527241 TAGAATGCAAGCAAGGTAGCTTGCTTACTATCCTAGTAGCGTACGTTGGTGGCAAGGAAGGAGGC
1 TAGAATGCAAGCAAGGTAGCTTGCTTACTATCCTAGTAGCGTACGTTGGTGGCAAGGAAGGAGGC
527306 ATTGGAAAAAGACTAGACCATACTAAAGTAAAGAGGCATTCGGGAAGCGACTAGTCGCTTCT
66 ATTGGAAAAAGACTAGACCATACTAAAGTAAAGAGGCATTCGGGAAGCGACTAGTCGCTTCT
527368 TAGAATGCAAGCAAGGTAGCTTGCTTACTATCCTAGTAGCGTACGTTGGTGGCAAGGAAGGAGGC
1 TAGAATGCAAGCAAGGTAGCTTGCTTACTATCCTAGTAGCGTACGTTGGTGGCAAGGAAGGAGGC
527433 ATTGGAAAAAGACTAGACCATACTAAAGTAAAGAGGCATTCGGGAAGCGACTAGTCGCTTCT
66 ATTGGAAAAAGACTAGACCATACTAAAGTAAAGAGGCATTCGGGAAGCGACTAGTCGCTTCT
527495 GGCGAAGCTT
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 127 1.00
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.22
Consensus pattern (127 bp):
TAGAATGCAAGCAAGGTAGCTTGCTTACTATCCTAGTAGCGTACGTTGGTGGCAAGGAAGGAGGC
ATTGGAAAAAGACTAGACCATACTAAAGTAAAGAGGCATTCGGGAAGCGACTAGTCGCTTCT
Left flanking sequence: Indices 526741 -- 527240
ATAGAGGAGTGAAAGTCCCCAACAATCAACGAGTTGATCATATCCTTCTATGAACCGTACGAGCA
CGTCCTCTGTCACCCCCCACCGCGCTTACGGCTCTATACCCCAACCCAACTTGCTCTGGCCCCGG
GTCCTCCCTTTCTATTCCTCGGTAAGCGGACCGTGGGGGCATGGGGGGCGGTATCTGCTTTTGAC
TGATAGAAAGTCTCTCTCTTTTGTCCCTCCTGACCGAACCCGCCAAAAAAATCACAATAGAAAAA
GTGGTTCTTGCCGGGACGTCGGAGACATCTTTATCTGAGGAGGAGGCTTCGTCGTCCGGCTCCTC
ATAAATGATGTTAGGATCGGCCGGCTCATCCTCGGAATCCGAAAATAAAACAGAGACAGAACGGA
ATCACTTTGTTTCAGTGACATATCTAATCAGACTGAATAGGATTTGAAGAGCTGTCACGATCATT
CACATCAATTTCAGCAGGCAGGAAGGGCGCGGAAGCTACCGTTTC
Right flanking sequence: Indices 527495 -- 527575
GGCGAAGCTTCTAGAAGGCCGACCACTACATAGAGAGATCCATATACCAGTCATGAGCTATCGCT
CATGCCTAGAGAGGCG
Done.