Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_049134
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 967100
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Found at i:13133 original size:27 final size:26
Alignment explanation
Indices: 13103--13163 Score: 68
Period size: 28 Copynumber: 2.3 Consensus size: 26
13093 AGAGTAATCA
13103 GGGATGCTTCCAGAAAGAACTTCTGAC
1 GGGATGCTTCCAGAAAGAACTT-TGAC
** *
13130 GGGATATTTTCCAGCAAGAACTTTGAC
1 GGGAT-GCTTCCAGAAAGAACTTTGAC
*
13157 GGTATGC
1 GGGATGC
13164 GATTGATCAA
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
27 13 0.48
28 14 0.52
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
GGGATGCTTCCAGAAAGAACTTTGAC
Left flanking sequence: Indices 12603 -- 13102
TTGGACATCGCCACCGAGATCGTTGAGGCCCCATGAAGACGGCTCTCCTTCACTGGGAAGATCAC
CGCGATCGCTGAGTCTGGTGACCAACGATTCCAGATTATCCAGCCTTTCTGCCATAGTCTCTATG
TCAGCCCAAATGGTCGACCTTGCCATCAAGTTGGGTCACTCGATCCGTCGAGTGTTTCCTTAGCA
ACAGCCGCCGCAGACAGCGCTCCACTGCTATCGTCAAGCTTGGACATGGTGCAACAAGAAGAAAT
TAGCAGAAATCGAAAGGATTTACCCAAAACTCCGCTCTGATACCAACTGTCACGCGCACGGGTAG
AGAGTCTGCCCGAGTCGTGCGGCCCAGTGACGCCTACTGTAGTGTAGCACCTGGGTTCAGCCTTC
TCCTTGCCGAGTTTCGCTTGTTTCGTTGAGCTCGCCGTTAGCTTCCTTTCTTTAAAGAATAATAG
TTTGAATATTAACAGCAGCCAAAGACTTTGAAATTAGAGTAATCA
Right flanking sequence: Indices 13164 -- 13663
GATTGATCAAGTATGTTGCGGTCAACACAGCTTCTGCCCAAACGAGGTACATTCATCCCAAACAT
CATAGCTCTAACCGTTTCCAATAAGTATCTATTTTTCCTCTCTGCTATTCTAGGAGTATACGCAC
AAGATCACTGATGAACAGTGCCTCTTGAAATAATATATTGATAAATGGAGTTTGACATGTATTAT
CCTCCAGAATCAGATCGTCAAATTCTTTTAAAATTCCAATACATTGTTTCATATTCCCATTAGAT
ATTTCATGTTCCCATGTGTCCATACGATTCTCCAAGCAACACTCATACCAAAAGTCATATTTTCA
ATGAAATGCCAACACCTGCGCCTTCATTATGCTATAGTGTATTGAGTCAGTTCATAGGTCATCTC
TATGCCACCGCCATCTGCGAGTGAAATAGGCTCTGCTACCTTGACTTTTGCCTTTGCAGGTACCT
AATACCTAATAACAGGTGGTGGTTACCTACGGTAATTGCCTGAGG
Found at i:30345 original size:43 final size:42
Alignment explanation
Indices: 30290--30408 Score: 170
Period size: 40 Copynumber: 2.8 Consensus size: 42
30280 CACGTTTTCA
30290 GCTTGCTCGGATGCGCGTTAGCGCAACGGCTTTCGCTAGCCGTT
1 GCTTGCT-GGATGCGCGTTAGCGCAACGGCTTTCGC-AGCCGTT
* ***
30334 GCTTGTTGGATGCGCGCGCGCGCAACGGCTTT--CAGCCGTT
1 GCTTGCTGGATGCGCGTTAGCGCAACGGCTTTCGCAGCCGTT
30374 GCTTGCTGGATGCGCGTTAGCGCAACGGCTTTCGC
1 GCTTGCTGGATGCGCGTTAGCGCAACGGCTTTCGC
30409 GCGTCAGCGC
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
40 35 0.54
41 1 0.02
42 1 0.02
43 22 0.34
44 6 0.09
ACGTcount: A:0.11, C:0.29, G:0.34, T:0.26
Consensus pattern (42 bp):
GCTTGCTGGATGCGCGTTAGCGCAACGGCTTTCGCAGCCGTT
Left flanking sequence: Indices 29790 -- 30289
AATCAGAATAGGTCCAGTCCAGGGACAAATCAATAGGAAATGCTATTTGCTTCGTAAGAATAACA
ATTCACTTCTATGAAATGAAAGAGTTTCACGGGAATTGTCTTGATCGTCGGATATCATTGATTGA
GAAATAGGAAGAAGTGTTCTCGAACGATTTCCTGCAATTCTTCCCAGTATGGAATGAGTCAAGAA
TAAAGCTACAAGTCTCGATCTATACGAAACGCACTGGGTTTTTGTGTTTCTTTCGGTTTCATTGA
TAGCAGAAGAGCCTTACTAATAGGGTAGGCGGCGGTTAGCCCCTATTACGTAAGCACTAGATAGG
GGCCTGAAAACTAGCAACGCCCTATCGTTGTTTGCTGGCTCGCTTCGCTTTTGAGGCTCCGCTCG
CTGGCTTTGAAGCCATGCTGAAAAACTACTGAGCGCGCTAGCGCGCAACGGCTTTCAGCCTGCAA
GATACGGCTTCAAAGCCGTATCGCGCAGGAGCGCTCACGTTTTCA
Right flanking sequence: Indices 30409 -- 30908
GCGTCAGCGCTCATTCCGTTGCTTGTTGCTTCTCGAGGACCGCGAGGATTCTTTCTCTCTCAAAC
AAAGTATGCTCTAGAATTCTTGTCCAAAACGAAGATGGTTGACTGCAAACCGATTGGGACGCCTC
TTGCTCTCAAGCACGAAAACAACATCCGCCCTACAGCCCCGGGGAAGAACAACCACTCTCAACAA
CAACCAGAAGATTGCGATCACCCCTAAATCCCCTTCGCCAGTAGTAGGGGACTTTCAACAACCAT
GATGACGTGCCACTCGTGCTTCTTTCAAGAGAAGCACTTCGCGTCACTCCTTTGATTGGCGGGGT
ACACCAAGTCACACCATTCTGTTCTAACAGGGATCACTCAATACGTAACTATGAATGGTTATTAC
CAGTCATTCATACTAGGCGAGGCGGAGACAAGAACTCGAAGAACAGCAAGCGCGTTAGCAGCCCT
GTCCCCGCAGCCCCGGCGGGGAACAAGTCAAACAACCATGCTTAC
Found at i:31124 original size:19 final size:19
Alignment explanation
Indices: 31102--31138 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
31092 TGAATCTAAT
31102 CTATTAATACGCTTCGCTC
1 CTATTAATACGCTTCGCTC
*
31121 CTATTAATGCGCTTCGCT
1 CTATTAATACGCTTCGCT
31139 TCGCTCGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.19, C:0.30, G:0.14, T:0.38
Consensus pattern (19 bp):
CTATTAATACGCTTCGCTC
Left flanking sequence: Indices 30602 -- 31101
AACAACCAGAAGATTGCGATCACCCCTAAATCCCCTTCGCCAGTAGTAGGGGACTTTCAACAACC
ATGATGACGTGCCACTCGTGCTTCTTTCAAGAGAAGCACTTCGCGTCACTCCTTTGATTGGCGGG
GTACACCAAGTCACACCATTCTGTTCTAACAGGGATCACTCAATACGTAACTATGAATGGTTATT
ACCAGTCATTCATACTAGGCGAGGCGGAGACAAGAACTCGAAGAACAGCAAGCGCGTTAGCAGCC
CTGTCCCCGCAGCCCCGGCGGGGAACAAGTCAAACAACCATGCTTACCTTCCCTACGGTCGGTAC
CTATCACCCGATAGTCCCTTCGTTTCACTTGACTTGAATTGACTTTTAGAGAGTCCCAAGTCTCA
TGCATTTTCACTATTTATCGCACTCGCGTATTTTCTTTCTATTATATAGACTATTATTGTTGTAT
GTATAATGACTTGTTATTTATATGAACTATGATTATGAATCTAAT
Right flanking sequence: Indices 31139 -- 31638
TCGCTCGCTTCAGTCGGGAAGTCACTCATTCAAACCTGCCTTCCCGTTTTCAGTCAGTTAAGTAG
ACTCTAAGAAAGAAGAGAGGTTTAAGCACTTTCGATTCGGTAATAGCCAATAAGACAGTTTGCTC
TTACCGTACCGCTTGTGCGGTCTCTCTCTTGTCGGATTCCTTCCTTTCCGTAGGTAAGTCAGTTA
GAGGACGGAGTAGTGTTTTCACTCTCGGCGGGAGGGCCATGCCCGAAGTCGTTACCTTAACCGCA
AGGAGGGGATGCCGAAGGCAGGACTTGAAAGAACAGTAGGCTTTAGCTTGTTCAATGAAGTTCAA
GGCTTGACTTTAAAGGGCTTGCTTCCTTGTCCAGCACCATAGGTGGGCACTAGCGCACTAGACCG
GTAACAGAACAGAAAGGATTCTCTCTCACTACGGCACCTGCGGTGAGCCTGACCTTCTTACCTTT
AGAGCGGCTTGCCCAAGAACGAGTACCTCACGAGCTTACTTCAAG
Found at i:61004 original size:15 final size:14
Alignment explanation
Indices: 60984--61018 Score: 54
Period size: 13 Copynumber: 2.5 Consensus size: 14
60974 CGAGTTCTTG
60984 GGAACAATCCTGATA
1 GGAACAA-CCTGATA
60999 GGAAC-ACCTGATA
1 GGAACAACCTGATA
61012 GGAACAA
1 GGAACAA
61019 GTCCCGAACC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 12 0.63
14 2 0.11
15 5 0.26
ACGTcount: A:0.43, C:0.20, G:0.23, T:0.14
Consensus pattern (14 bp):
GGAACAACCTGATA
Left flanking sequence: Indices 60484 -- 60983
CTTCGATAAGAGCAGAAGAGGGCCTATAGCTCATTAATCCATGCCAGTAGGTGGAAGTGATACAC
CTAGATCGAGGAATATAGTCCATTACACACTAGGGCCAGCCCATAAAAGAAAATCTCGTTCTATA
ATAAATGAATTGTCTCACACGCTCTGAAGTCTTGGGACTGATCTTACCATTGGGACTGCGCCTAA
GATCAATCCTAACCTACTTATAAGACGTTAATAACCGATTGAATTTCTTAGGACAAGCAGCCAAT
GAGTGTAATTATAGGCCTTACCGCATCCTCTTCCGCTAGTAGCCACTGCTGCTTATAATTCCCTT
TCCTAGAAGAAATTCTTATGCTAGGTTTGCCCTCTTCTCTTGGCCACTGGATCGAATCCAATAAC
TGTAATTTCACCTCTGGCCCTGATTGAGCATCCAAAACTCCACCTTCTGCTTCAGTCGTGACTAC
ATTATCAGATTCCGGAAATAATCATCTTAAAAATACGAGTTCTTG
Right flanking sequence: Indices 61019 -- 61518
GTCCCGAACCCAATGGTATCATATCTATTTTACAAGCCCTCTAACAGAAATGGAAATAATGAAGC
AAGGCTCAAGAGAAGAGGGGTCCGTCCATTGAGATTAGAGCCGCTCGCCCTTGGTTAGAGACAGA
CTTTCCCGCGGTTAGATAAATAAAAGTTTTTTGTTTCAAGCTCGGCTAGACGCCGCGGTTAGGCA
GCTCGATTAGATAATGGGTAAAGCGCTCTCTTTCCTTCTTTCTGAGCAGAATATCTTTGGCGGGA
GAACACTACAGTACCACTTAGTCAAGTGAAAGCCGGGCCTTTCTCCAAACAAAACATATGGACTT
GCTCTCACCCCCTCTTTTCGGCAAAGGAGGTCACCTTCGGACTTTATTTTTCTGATCCAATGGCG
AATCCTTTTATTATTCTTTGCTACCTTTAAGGCTCGAAAAGGCATGATAAGCTATAGAGAGACAA
ATGGGCATAGCATCCAGGTCCAGATGGAAAAGAAAAGGGTGGGAG
Found at i:69141 original size:15 final size:15
Alignment explanation
Indices: 69121--69151 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
69111 TTGAATTGAG
69121 TTAAGCAGTACTAGC
1 TTAAGCAGTACTAGC
*
69136 TTAAGCAGTAGTAGC
1 TTAAGCAGTACTAGC
69151 T
1 T
69152 GTTGTGTTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.16, G:0.23, T:0.29
Consensus pattern (15 bp):
TTAAGCAGTACTAGC
Left flanking sequence: Indices 68621 -- 69120
CTTCAAATCCATTCTGTGGAAATGCAGTGAGGCGATCGACCAAATACCCAGCTTATGACCCGGAA
GGATAAGTTATGCTTCTCCGGCTGTTGCTGAACCTTTTAGTTAGATCTCTATAGAAAGAGGGAAA
GAAATAGGAAATGATGGATCGAATTCCTCCCTTCGATGCCGAGCTTTCAAGCAAGTAGCGTTTGG
AATGGCAGGATTGTTTGAATTGTTTGAAAAGTCATTCCCCACTGATGTGACACTAACTTAAACTC
CATTTTAACATATTAACCGGTGGTGAATTCTTAAAGGATTTAAAACCTGTTAAAGCCCCTCCTAC
CTACGTGACACCGACTTTCACTCCTCTTTCTCGATGTGAGAGCGAGTGCCACTGCCAGCTTTGAT
TCACCACCGGTGATTGTTAAGGGAAAAGAGTTTATACGACCTGTAGAGGACTTCTAAATCTTCAT
TCACAGCAGTAAGACTGAAAACTGTAAGCAAGTAGTTGAATTGAG
Right flanking sequence: Indices 69152 -- 69651
GTTGTGTTAGCAGTACTAGCTGTTAACCCTATCCCTTGGGTATTGGTCACGAACGGAATAGGGTT
TAATGCAAGCAGTAGTCACTCCTGCAGTAATTCCTTTCCTGTCTCTAACTGTACTACTAGCAAGT
AAGCAAGCAAGCAATTGATAAGAGGTTAATGAGCGAAGTGACCAGGCAAGAAAACGGATGCAGCA
ATCAAACTACTGCAGCAATCAAAGGGCTGCCCTACTTCTCTAGTTTACCGCGCAACGGCTTTCGC
GCTAGCGCGCTCATCCCTTGCTTGGTTCTTCCGTGAGGAGGGCATAAATAATCATTCTAGAACTA
AGATCGAAAATCCTACTTTAAAAGACACCTACGCCAGCTCCTGCTGAAGCAATTGTAGCTGCTCC
GGCACCTATTGATTTTGCACCTTCTAACATAAGAAAGAGTATACACCTGTATGCGACAGGACTTG
GCTGTCCAAGCTGCTCTACGTACCCTTTTGTTAAGGGATCACGTC
Found at i:77052 original size:21 final size:21
Alignment explanation
Indices: 77026--77067 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
77016 TGATGAAAGC
77026 CTTATTTGTAGCATCATCTAA
1 CTTATTTGTAGCATCATCTAA
*
77047 CTTATTTGTAGCATTATCTAA
1 CTTATTTGTAGCATCATCTAA
77068 ATAAATAGGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.17, G:0.10, T:0.45
Consensus pattern (21 bp):
CTTATTTGTAGCATCATCTAA
Left flanking sequence: Indices 76526 -- 77025
TCTGTCGAACTAGAACTCAAACTGCCCGCAGTTACGGGACTAGCTCCCTGGCCGTAGCAACTACA
GTGACTCTTGCTCCTGAGCTTCCAAATCCTTACTTCAGGGATTAAGGTAGCGTTAGCTACTTACT
TGTATTAGAGTTAGAGTAAGACAAGGCCTTGACTCTATTCCTTCCTATTTCATATCATACTTGGG
AACGACTATCTCTAACTCTAAGTCCGGAATAGCGGCCTTGGTTCAACTCCTAGCTCGAAACGCTG
CCAACTCCTTACTGATATTTCAGGGGTTTAGGTTGTTTACTTGCTGGCTGATAAGTCAGGTAGCG
AAGCCTAAGATAAGATTAGATGACTGATTATCTTACGTCTTTGTTTAACTGAGGTTCCCCGCCTC
AGTCCCATCACACATTTCTACTGATGAACAAGTCGCTTTTTCTTCACAAAAGTACTCTACCATAT
GTGTCCCCTTTAGCACCTGATATAGACGAATCAGGTGATGAAAGC
Right flanking sequence: Indices 77068 -- 77567
ATAAATAGGGTTTTGAGCCGCCTACCCTGACCTTCCTTAACATTCCTCCTGTTACGGGTCGGCTT
GGGTGTTCAATTGAGGGTGGAGGAAAAGACGTATATTTGCCATTGGGAACTACATTAATCAACGG
CTCTTACGACCAATCCATGATTGGCTAGCTGAGGTCTTGCGTACTATCCTCAGGATGGTACGTTC
GATCAAACTAGGCCTCTTGATCAACTAGTTCCGTAGTATATTCCTTCGACTTTCAATCTGCAACG
GACCGTTGGCCGTTGTTATTTCTATTCGAGGTGTTCTGCTATCTGTTTGACCGCAATTTTGCGTC
AGCTGTGGTTAATTCGACCTTGGCGTACAACACATTCGAAGTTCCATTCGTTAAGAAAAGGTTCT
CTTCAGTGTGTTTCACCACTGGTCAACCACTTGGCTACTATGCGTCTTGGCCCTTATTTTCGCTC
ACCCACCACATTTTTGGTCCAAACTAGACTAGAAAAGGTCCTCTT
Found at i:80436 original size:21 final size:21
Alignment explanation
Indices: 80410--80451 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
80400 ATTGTGCCAC
80410 CTCAAACTCAAAACTATATTT
1 CTCAAACTCAAAACTATATTT
80431 CTCAAACTCAAAACTATATTT
1 CTCAAACTCAAAACTATATTT
80452 ATTACCCTCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.24, G:0.00, T:0.33
Consensus pattern (21 bp):
CTCAAACTCAAAACTATATTT
Left flanking sequence: Indices 79910 -- 80409
CTATTGGAGTGGAATCCTTTTCTAGTAATCCCCTTTTTTGGCTTATTCCATTCGATCTTCTACTT
GGTTAACCCATACCCTTTTAGTAATATCCTTCGTTATTTATCCGGCTTCGGTTGAACTGGCAACC
TACTTTCCACTTTCCAACGGTTGAGTACCCGAGTTCGTAGCCCGATCGTCTTCCCTGACTTTGCT
TTGAAAGTCAGCCACTTCCTTCCTGATTCAGTTTCTCTTTCGGGGTTCCTGCAGCTTATTTTGAA
GCCTATGTTCCGGTTTCGGGGATGAGTTTCCTGCCGCTATTTCATCTTTTGTCTACTTGACTATT
TCGAAGTCAAGCCTACATACACCTCCTGTCCTTCTACCTCCTCCCTGGGTAGTCGAGTAAGTACC
ACACACAAGGCAAAAGCTCTTGCTTGATCCGCCCTCCAAGGCCAAGGGCTACTGATTGTGCTTGT
GCCAGCTACGTCTTTCCTCTACCTAAAGGTAAGGTATTGTGCCAC
Right flanking sequence: Indices 80452 -- 80951
ATTACCCTCCCTCTTTCTACGGTACCGGAGGATCAGTTGCTGGAGAAGAGGAATCCTGTAGATCG
GCGGAATCTCTGTTCTCACCCCTCTCGCTAAAGAAAGGAACTAGTTAGGATATACCTTGGTATTG
GTCCTCAACCCAGCGGAAGGAAAGGCAGTGAAGAGGCTCCGGCTCCAAGGTCCAGCTTCTTTCTC
TTTGCTTAGATGGCACCTTGGCGAGGAATCTTTGAACCTAGAAAACTAAGAGCTTCGTCCCTCCT
CTCCTGTGAGGAAAGACCCACCTCGAGTTCAGCGGCTGCTTAGTAGAGCAAGGTTTAGTTCTTTT
CTTCCTAAGGGCTTCACTGGTAAAGAATCCAAAGAGTTTCACTCAGTCATATACCCCTCTACCAA
AACCCAGATTCTCTGCTTTCGGGTTACCCCATTACCACTAAAGCTCGATATTGATCTTGATCCCT
ATCCTTTCTTTGATTAAAGAAGGAGCCTTCACCCGCCCCAGCTAC
Found at i:87029 original size:15 final size:15
Alignment explanation
Indices: 87011--87052 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
87001 CCGGAAGAGG
87011 AGGTACCGGCTGAGA
1 AGGTACCGGCTGAGA
* * *
87026 AGGTCCCGCCTGAGG
1 AGGTACCGGCTGAGA
87041 AGGTACCGGCTG
1 AGGTACCGGCTG
87053 TGGCTGTATG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.19, C:0.26, G:0.40, T:0.14
Consensus pattern (15 bp):
AGGTACCGGCTGAGA
Left flanking sequence: Indices 86511 -- 87010
CTCGGCGATAAGCCTACCTTTGAAAGGAGCCAGGAAAGCAAGCCTTTAAGCCAGAAGTGCCGCTG
TGCCAGTGGAAATCTACCAGTACCCGTTGAAGTTAGATCCGCTTCAGCATCATCAACAGACGGAG
AAGAAATGGACAAAATGTTATTTGCGGACTCGCCTCAGGATGGAGAGGAAGCTACTGTGGAAGAA
GGCAGTTGTTGAGCAAGTGACATTGGTTGAAGTTCAATATGAATATGCATCATCAACTGGAGAAG
ATGAAGATTCCGCTGAAGATATCGAGTTAGAGCACGGATTTCAATTGTTCTCTTACAGTTCCTCC
ACCAAACTGTAGTACAGAAGGAATAGCCGTGACGCGTTCGGTCGCCAAGCCCGCCTCTCTCTCGT
TGTTGCGCGCCTTTACTCTACAGAACCAGCATAGCTCGCAGACGAGCACGCTAATGAGGCTCGGA
ATGAAAAAGCCCTTGGTTGGGGAGGGAGGAAGGGGCCGGAAGAGG
Right flanking sequence: Indices 87053 -- 87552
TGGCTGTATGGAGGATTCCCCTGGTCAAACTGTGGTGGACTACGGGGATCTCATAAGCGCTCGGA
GCGTATCCCGAGCAGACGAAGAGTTATCCGATGAGGAAACAGACATTATTAAATCACTAGTTAAG
ACAGCAAAACAAATCCAATTTTGCAACATCGAAAGAATGGAAATGCGAGAGATGTGCAATAAAAA
TAAAGTGACGCTATAGACTCAAAATCAAAAATAAGCTTTGTATTTAGACCTGCAATTATCAAATA
TTATATTATAGACAACAATACAAACTAATAAAAGAAAAAGAAAACGAGATAAGAATTTCTTTTTG
TTAGAAAAGGATTGACTTCCGCTCAATGAAACGCCCGGCAAAACCGGCGACCATCAGGGTAAGAA
AGCCCCAAAATGAGTATAGTACTTTATTCATTCGAAGCAAACTCAACTAATAAGAAAGAGATTAT
TCCTAATCACTTGAGATGCTGGGAAGCCGGCAGCTGTGCCCTAAC
Found at i:97526 original size:18 final size:17
Alignment explanation
Indices: 97503--97545 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
97493 AACCGTCGTT
*
97503 GACTATGACAGCAGTCGC
1 GACTATGACAG-ACTCGC
*
97521 GACTATAAACAGACTCGC
1 GACTAT-GACAGACTCGC
97539 GACTATG
1 GACTATG
97546 GCAGGGCGGT
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
18 17 0.81
19 4 0.19
ACGTcount: A:0.33, C:0.26, G:0.23, T:0.19
Consensus pattern (17 bp):
GACTATGACAGACTCGC
Left flanking sequence: Indices 97003 -- 97502
GTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGT
CGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCG
CTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATAACAC
TTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCA
GAGTCCTGTGTTTTAATAAACAGTCGCTACCCCTGGTATGTGCCGCTTTCCTAATCAAAGATAGG
AGAGCACCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAG
CGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTCACCGGGAGGAT
CGCCCTCCCAATTCGAAGTTTTTCCTGGAAGTTTCAACCGTCGTT
Right flanking sequence: Indices 97546 -- 98045
GCAGGGCGGTACGCTCTGCTCTCTCGCGACCCCTACTCTAATCAAAAGACTAAAGGCCCAGATTC
AAAAGGCGAGCACTGAAATGAGCGAGTAGACTCGTGACGCTTAACGACTGCGGTTTCATAAAGAG
TGCTTCGAAAGGTGTCAGCAGGTGCGCGGAGCCGGAGCCCGGCATGTTCGCCCGCTGGGCCGAGT
GTTCGCCCACTTCAGAGTCTTCGCCTTTAGATAACAAAAGTGTCCGCCCGTCAGTTATTAGGTCG
CCAAACTACGACGAGAGTTTCGCCTTTTGAAGCAACAAGCAGCTGAAAACGTGACGCGCCCTAGC
GCGCAACGGCTTTCAGCTAGCCGTTGCTTGCTGGCGCGCGGGACTTTTCAGCTCCAGTAGCGTAG
GGCGACCGGGCCAGGCCGAGTCAGAAAGGCTTTGATGACTCGACGGTGAATATTAGGAAAGGAGA
GCGAGGGAAGAGGGGCAGCCCTCGGCCCGATCATCCAATTCGCTC
Found at i:107144 original size:18 final size:18
Alignment explanation
Indices: 107121--107156 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
107111 TATCTTCAGT
107121 TGATTGGAACATAGCATC
1 TGATTGGAACATAGCATC
107139 TGATTGGAACATAGCATC
1 TGATTGGAACATAGCATC
107157 ACGAGCAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.17, G:0.22, T:0.28
Consensus pattern (18 bp):
TGATTGGAACATAGCATC
Left flanking sequence: Indices 106621 -- 107120
GGGTCAAATTGTTGAGTGATAGCTTGAATTTCTTCGTTTACATTTGTTGTTGGTAATGACGTCAG
ATTAGAACTCAAATCGATTCTAGAAATATGAGTCAAATCTATTCCATAGAAGAAGTGCTGCAAGA
ATGCTTCTTGCGCTTTTGCGAAAATTGGACACTTGGGGAGTCCCATACCACGGAAAGGGCACACA
TCAATAGGAACTACATTCGATAATGTAGGAGCCTGATTCATCAGCCATCCAGTTGTCGGATGAGC
ACAATGCAGCCCTACCGGATCAAGCGTCCAAAACAAAACAATATTTATACATATTAGTCCGCTAA
ACACCGCCAAAAACGAAAATCCCATAAAGACGAGTACCTCAACGCTTCTGCAAGTGAAAACTCTT
TATGATGGGAGAAGGTTCTAAATTGAGAACATCCATAAGCCCTTTCGTTTTGCGTTCCGGAGACT
TCGAAGAAAATTTCTCTTTAAGAAAGGTGCCTTAGTATCTTCAGT
Right flanking sequence: Indices 107157 -- 107656
ACGAGCAAAACCAGCAGCAGTTAGAGTACCATGTAATAATGATGACGGTCTGAATTTTGGTAGTA
CTGGTGGCATTCGCAAGTGGACTGGCGATCTCGAAGATCGTAAGTGACTTAAACTTTCAATTGGC
TTCCATTTTTTTATCTATCGCACTTGCCAATAGCGAGATTCTTGCTTAAAAGAACGTCACCACTA
CTACGTGAGCGAGCAACAGCCAATTGTTCGTTTAAGGAACGATTAAGAACTTGTTTTTACCTGTT
AAGATATGGAAAAGGAAGACAAGTTGTTCATGATGGTGGATTTTATCAAATTCACTCTTATCTTT
CTGGGCGAGTGAAGCCAGCTCCATTAAAAAAAGAATCCTCGCACAGAAAGACTTTTAGCCTTTAA
TTTAAGGCTATTGGTACTTTCGAAAGCTATTAGTACTTTCGAAGGCTATTGGAGTATATTGCAGG
GCGGTTAACCCATAAAAGAAATTCTTTGTGGGAATAATCAAACTC
Found at i:107577 original size:19 final size:19
Alignment explanation
Indices: 107553--107598 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
107543 TTAATTTAAG
107553 GCTATTGGTACTTTCGAAA
1 GCTATTGGTACTTTCGAAA
* *
107572 GCTATTAGTACTTTCGAAG
1 GCTATTGGTACTTTCGAAA
107591 GCTATTGG
1 GCTATTGG
107599 AGTATATTGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (19 bp):
GCTATTGGTACTTTCGAAA
Left flanking sequence: Indices 107053 -- 107552
TTTCGTTTTGCGTTCCGGAGACTTCGAAGAAAATTTCTCTTTAAGAAAGGTGCCTTAGTATCTTC
AGTTGATTGGAACATAGCATCTGATTGGAACATAGCATCACGAGCAAAACCAGCAGCAGTTAGAG
TACCATGTAATAATGATGACGGTCTGAATTTTGGTAGTACTGGTGGCATTCGCAAGTGGACTGGC
GATCTCGAAGATCGTAAGTGACTTAAACTTTCAATTGGCTTCCATTTTTTTATCTATCGCACTTG
CCAATAGCGAGATTCTTGCTTAAAAGAACGTCACCACTACTACGTGAGCGAGCAACAGCCAATTG
TTCGTTTAAGGAACGATTAAGAACTTGTTTTTACCTGTTAAGATATGGAAAAGGAAGACAAGTTG
TTCATGATGGTGGATTTTATCAAATTCACTCTTATCTTTCTGGGCGAGTGAAGCCAGCTCCATTA
AAAAAAGAATCCTCGCACAGAAAGACTTTTAGCCTTTAATTTAAG
Right flanking sequence: Indices 107599 -- 108098
AGTATATTGCAGGGCGGTTAACCCATAAAAGAAATTCTTTGTGGGAATAATCAAACTCAACTAAG
GAACAGTTACTGAAAATGAAACCCTATCTATACTAACTATATTAGGGCTTCATCAAACTAACTAA
CTATATATGCAATTAGTGACGTAAGATGATTGATATGCATGCTTGTTGTGACTTTTGAGTTCGCT
AAGAGATTCTTTGTGCGAGGGGTACTGTAGATTTCTCTCAAGTATCAGTCCGTGCCCTTAGGATG
TCCAGATGGACTCTCGGCTGGCTCTCCTTCGGGAGAAGTACCATAGAAAGTCTAATAGCGTACTT
GCCCGATTAGGTGGAGCTGGTTACCGGACTTGTCAGTTCGCTACCACATCATCGTTCTCGACGAT
GGGAGCGATTGTTTGTGGTCTTGGACAAACCTGGCCGCGGTTCTCCACTCCCATTAGAGTTTTGG
ATTGGTCGGGCGCACCCTCAATCCGTCACGTCGAAGGGTCTGCTA
Found at i:118673 original size:13 final size:13
Alignment explanation
Indices: 118655--118679 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
118645 GAGAAGGAGC
118655 TTTGTTTGTGGTA
1 TTTGTTTGTGGTA
118668 TTTGTTTGTGGT
1 TTTGTTTGTGGT
118680 TGGTTACATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.04, C:0.00, G:0.32, T:0.64
Consensus pattern (13 bp):
TTTGTTTGTGGTA
Left flanking sequence: Indices 118155 -- 118654
ATCCCTTTAATGAATCCCTTTGGGGGTAAGGGCAAGCGAGCAAGCAACGGCCCAATTCACGTAAA
GGGAACGCGAAAGCCGTTGCGCGTTATAGCACCCGTTTTCTTGCTCCCTTTGCTGGTTCTTTCGA
GCCAACGAAGGAGGGCTCTTTCTCTCTAGCCGTGAGAGCCGAGACCAGTAAAAGAGCAAGTACGC
CTAGCTCTGTTAAGCTGTGTGCTTGCGCACTTAGGTTAGCTCTTGCTATTGCTTCGGGGCAATCC
TCTCGCCTTCTTCCATTTGGTTGGTCCCACATCGAGGGGTCCAAATTCCCAACGTGCATTGCTAG
TTCTCACTTCGCGCATCCGCGCTCCGTTCGTTCCCTACGCTTCTGCATGAGTGATCTTTCTATAT
AATGTGGATCGACTGATTCATTCGGGTCGATAGGCAAAATAGTACGTAAAGAAAGGGTTCCTTCC
TCCCAACGAATTTCGAGTGATAGGGAGAGCCCTAAGAGAAGGAGC
Right flanking sequence: Indices 118680 -- 119179
TGGTTACATTGACAGGGAAGTTTCCATCCATATCAAAAGGGAGTGGGTTCAACCTTTCCGATTGA
TCTGCCGACCCCTTTCTGCGGAAGAGATTTAGGCTCAACAGTGGAAGTTCATCCGGTCAGGTGCT
AGGCTCAGCTCAACCCAAGTGCCCCTCCTATGGCGTTCGTGACATAGCATATTGTCTGATCTTCG
AGCAGGGGAGGATAAAATCCGCTACACCCACCGTCCTTGGCTATTAGTTACTGAGCTCTTGCTAT
AGCTCTAGGGCTAGGGCTTCTTTCTAGCTCTTGCTCGCGCATTTGGGCTCTACTTCATTCTTTTG
AAAAGAACTCCTCCCTGGCTACTACTGAATTCATTCCTCTCGGTAAGTGAAGCTCCCTCCACCCG
CCGCCCTTCGGTCAACTCAAACAACAGGCCAGGAAGGACATTGTTGAACGCTCACTGAGTGCTTC
TAGGTTAAAGGAAGCACTAGACTCACTCCACGGGAACTAGCCTAA
Found at i:126276 original size:22 final size:22
Alignment explanation
Indices: 126244--126289 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
126234 TGTCGTCCAG
*
126244 CGGAGCTTAGAAGAAGGTGACT
1 CGGAGCCTAGAAGAAGGTGACT
126266 CGGAGCCTAGAAGAAGGTGACT
1 CGGAGCCTAGAAGAAGGTGACT
126288 CG
1 CG
126290 CGCAGACAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.37, T:0.15
Consensus pattern (22 bp):
CGGAGCCTAGAAGAAGGTGACT
Left flanking sequence: Indices 125744 -- 126243
TCCTTAATAGTTCACTGTTGGCGGAAGCCAATGTCCGGGGTCCTGGGACTCATTCTGACTGAAAC
AAGGGTGGGTCTTTACCAACTTCAAAATCCAAAGATTTTAGGGAAGAAAAAGAGGGCAGGGTACT
CTTCATTCTTCATTCGAAACTAATGAATGTCGGGTCGGGGTTTCTGCCTTGTTATCAAAAGGGAG
GAGTTGGGTAAAGCAAACTCCCTCCTTGGACGAGCACGGGGCTTAGTCAAGTAGAACCGGGTTGC
GCTGCTTGATGCTCCGATCGAAAACAAATCAGTGGGGCCATGCCGGTACGACAGAATATGCGTTA
GAAAGGTCAATCCCTCCCTAAAAAGAAACCGGGCCGAACTTCTAAAAAGCAGCCCGCCCGCTTCC
ATAGAACAATATCGTGGCAACGTAGACCTAAGTGGTAATATTGGATCCTGGGAACCATCACAAGT
ACGGCCGGCCTGCCTATATTTGAACGAGAATGCCGTGTCGTCCAG
Right flanking sequence: Indices 126290 -- 126789
CGCAGACAGCTGACTCCTTTTCAATAGAAAGGAATAGCCAAACCAACCCAGCTGGCTGGTCAATC
TCAGAGATCTTATCGGCCGGCAAACCGGAGACGGACGACCACGGTCCCGACCGTCACCAGCACCG
GAGGTTTACTAATCAATGAACCCCGAAACCCACTTTCTTTTCTGACCAAGCCGGAACAAACCGTC
ATGGTCACGACATGTTGTTGATATTGATTGAGTTGGAGGGACTTTCGCTGACTGAATCCATCCAT
CAAACTAGACCCCGGTAACCTTCGTAACCAAAGCGTCACGACAGAATTCAAAGGCTTTGGATTCT
TAAGTAGTCGGGGCAAGGAGGAGCACGTAGGAATGCCGACCACTACATAAGCCACTAGTAGCTGA
GAGAAAGCGAGCAGCAAGCAGCAAGCAGCTTCAAAAAGCCGTTGCGCTCCCGCCGTCCCCCAGAC
CCCCGAGGCTCCCGCGCCTTCTGAAGAAGCGTCGGCTTCAAAGCC
Found at i:130766 original size:51 final size:49
Alignment explanation
Indices: 130682--130780 Score: 137
Period size: 51 Copynumber: 2.0 Consensus size: 49
130672 GCAAGCAACG
* *
130682 GCTGAAAAGCCTATTAGTAAAACGCGCTAGCGCGCTTTAGTTTTGAAGCAA
1 GCTGAAAAGCCTATTAGTAAAACGCGC-AGCGCGC-ATACTTTTGAAGCAA
130733 GCTGAAAAGCCTATTAGTAAAACGCTAGC-GCGCGCATACTTTTGAAGC
1 GCTGAAAAGCCTATTAGTAAAACGC--GCAGCGCGCATACTTTTGAAGC
130781 TTCAAAACGA
Statistics
Matches: 44, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
50 11 0.25
51 31 0.70
53 2 0.05
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.24
Consensus pattern (49 bp):
GCTGAAAAGCCTATTAGTAAAACGCGCAGCGCGCATACTTTTGAAGCAA
Left flanking sequence: Indices 130182 -- 130681
TCCTCTAGTCTGCATTCCTTAAGGCAAATCATATCTGGTTTTCTTTTGCAAAGAGTCTAAACAGC
CATTTGTTTGGGGTCGCTGTCCAGGCCCCAACCATTCCATGATAGAATTTGCATTTGGCCCTCTT
CCACTTTTTCTTTTTCTGGTCACTACTGTTAAATCCTGTAGCGCCGGTACCTACGGACCAGAAAC
CTGTTCATTTTCTTCGCCAGGTGGCTATAATTCTGAATATTCTAGTATGGTTATGGGAGTCAGGG
TCGTCTCCTCGGCTGCTACCTTCCCAAGGTCGGGATTGCGTCTGTTCGGGCTTGGGCGGTTTGTC
TCCTTGATTTCTATTCATTGGGCTTTCTTTCTGATTCCCACTCCTTGCTGCAAGAAAGAACCTTC
CTTCGGATCTTTGGGCGGTGTTTGGACTTCGGATAGCCCTCTCTTGCTCGCGGGCAATAACAATA
GCCGGCAGTGTCTGCTCATCTGAAGGTCCCAGCAAGCAAGCAACG
Right flanking sequence: Indices 130781 -- 131280
TTCAAAACGATTATGACTATTAAGCAAACGCGCTAGCGCGCTCAGTAGTTTTCAGCTGGGTCCAC
GATCCACGATCTGCTGGGGTTTGCAGGAATTAAACCTGCAAGACCAAGGACAAAGAGAGCCGACG
ATTGCCTTGGGAAGATGTTCAGACCTTGTTGACTGCGCCCAGATTCCAAAGCCCTAGGTCGTGGG
CTCTGATACCATGTGAAACGAGAGATTTTGAGAAAGAATCATCATTTCATTCATAGATAAAAGAG
AGAGAGAGAGAAAAGTATGAAGGGTCAAAACTAAATGACCCCTAATGCACAACGAGATTGACAAT
GGGTAGTCTTTGACAGAAAGACCCTTGACAGAATCAAACAATAAGTAATATACATTGGTACATGT
ACATATGTCAACACTCCCCTCAAGCTGGTGAATGTAGATCTACCATTCCCAGCTTGTCAACAAGA
AGATTCAATCGATCCTTTCCAAGAGCGTCGAGTGAACGGCAACTT
Found at i:170575 original size:16 final size:17
Alignment explanation
Indices: 170554--170587 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
170544 ACCAAGCACT
170554 AGGCGCTAACA-GACAA
1 AGGCGCTAACAGGACAA
170570 AGGCGCTAACAGGACAA
1 AGGCGCTAACAGGACAA
170587 A
1 A
170588 AACAAGCTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.44, C:0.24, G:0.26, T:0.06
Consensus pattern (17 bp):
AGGCGCTAACAGGACAA
Left flanking sequence: Indices 170054 -- 170553
CCCGTAGCAGAGCAGTACGCTTGTCACTATTCTTTCCGTGCTTTATCACTCTTGTTAGCTGCTCG
TTAGCTAGCAAATCCGCTATGGTCTATGGTCTCCTAATAAGCGTACTACCTAGAAAGCTCAGTAA
TTGGAAAAGAAACAGAACTAGAACAAGAAAGCGGTGGGTTTCGGGCTTGAGTGCCTATCTATTCT
AACTTCCTACTAGCTAGTGGAGCGAGTATTACATAACCTTGACTGATAAGGAGAGGAGTACTGAA
CATTAAGCTAAAGAGGAGTCTATGCATGTCGAGCAGAGATAAGACCAGTGCGAGATATGAGATCG
AGAGCATACTAGCACAGTTATAGAACATAACCGCGAGGTGCAACCTCTATTCCAAGAAAAGACTG
AAGAGGTCCAAGATCCTTCATATCTTAAAGGCCAGCTGATCCTTAAGAAAAGAAACGAAATGGCA
TCAGCCCCATCTCCAGAGATAATAAATCGACATATACCAAGCACT
Right flanking sequence: Indices 170588 -- 171087
AACAAGCTTCGAACGAGAATGAAAAGATCGAGAGTACGTTCAGTGGTTGTTGAGTTGTCTTGGCC
TACTGAATAGAGAGTTGAATTGACTAAGCGCCCCGTTTGCTGTGCCTACAGAGAGAGAGTTACGT
GTAGTCAACTCGGTGGGGTATTCTCAATCGGCGAAGCCTCGCTACAGTCACAGCTACAACAGCTA
ACAACAGAGCGGATATCACGCAGCGGATATATCGGTTGTTAACATCGGGTGCTAAAAGAAAGCAA
CACGAATTCTCTTATATAACGAGATCATATTATCTTACATAACCAGCGACAGGGTCTCTGGCTTG
AAAGACGACACTGCCTGTGATACAAGAAGGCGCTCGTTGATGGCGCGAGGAGGAATGGCCAGCCA
GCCCCTACCTGGAAGGAGATCCACCACGCCAGCGCGCATCGCTAGCTCAATGAAAGGCAACCTAC
TACTTTCTTCCTGATGCCTTAATTGCGTATATAATATAGTTGTGT
Found at i:186083 original size:45 final size:45
Alignment explanation
Indices: 186030--186142 Score: 163
Period size: 52 Copynumber: 2.4 Consensus size: 45
186020 CCGCGCAGTA
186030 GTTTTGAAGCTGGCTGAAAAGCCTATTAGTAAAACGCGCTCATAC
1 GTTTTGAAGCTGGCTGAAAAGCCTATTAGTAAAACGCGCTCATAC
186075 GTTTTGAAGCTTGCTGGCAGCTGAAAAGCCTATTAGTAAAACGCGCTCATAC
1 GTTTTGAA----GCT-G--GCTGAAAAGCCTATTAGTAAAACGCGCTCATAC
186127 GTTTTGAAGCTGGCTG
1 GTTTTGAAGCTGGCTG
186143 TGCTCCGTTA
Statistics
Matches: 61, Mismatches: 0, Indels: 14
0.81 0.00 0.19
Matches are distributed among these distances:
45 12 0.20
47 1 0.02
48 3 0.05
49 3 0.05
50 1 0.02
52 41 0.67
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.28
Consensus pattern (45 bp):
GTTTTGAAGCTGGCTGAAAAGCCTATTAGTAAAACGCGCTCATAC
Left flanking sequence: Indices 185530 -- 186029
GGATAGACATTCAATGTCCAAGAAAGGTGGAAAGTCTCCATCTGAATCTGTTCAGCACCTTTTCC
ACTCTTGTTCTAGGGTTCCCCATGAAAACGAGCACCCCTATCTAGTGACGGGCTTTGACACGTTC
GCTTAGGGCTTGTTTAGCGTATCAAAGGCAAACCGCTTGAAAGCAAAGTCATCCTTCAACTTCGC
TGCCATGTTGTGCTAAGCAAGTCACATGGTGCTCCGTTCACTGTGAGCAAGCACCTGTGTCGTGC
CATGGGTGTTCCTGAGTGCGGGTACCTTAAGAAGCAGCAAACTTGAAGGTTCATGAAACCTGCTG
AAAACTACTGAGCGCGCTAGCGCGTTTTACTAATAGGCTTTGAAGCCAGCTGAAAACGACTATCA
ATTCAGGCGCGCTAGCGCTTTACCTTAGTAATAAGCTTGGAAGCCATGCTGAAAACGTAAGCTAG
CGCGCAACGGCTTTGAAGCAGCCAGCAAGCAACGGCCGCGCAGTA
Right flanking sequence: Indices 186143 -- 186642
TGCTCCGTTAACTACTAACTACAGGTACCTTTCAAAGAAGCTGTGCTCCTGGGATACGAAAATGG
GGAGGGATGGGGATACCAGCTTGAATGCTAAGCAGCAACAGAAGAAGCAAAAGAAGCTTTCAAAG
TATAGTGAATCGGTCCCCCATAGAAGCAGGCCTGTAGATGTACCTTGGGCACACGTGGATGAGAG
TACCACCGCTGACATAAGCGTCACATCCCATGATGAACAAACAACGGTGGTACGATCATTAGCAT
TGAGTCACCTCTATCATACGACATTACACGACGAATAGCAGTGGAACCGTTTGAGACCTCAGATG
CCACCCGGTGAACCAGGTGTAGTATACGGGCTGCTCTGTAGGTAGCTATGAACTCGTATACGAGT
TCAGTGGCAACAAGAGCTGCAGGTGAACAAGAGAACACCGACGCTCTGGCACCACAAGCACTATA
CTGAGCAGTATACGAGAACAGCGGCGACGGTTTTCCCGGGATTAG
Found at i:186113 original size:52 final size:52
Alignment explanation
Indices: 186042--186142 Score: 193
Period size: 52 Copynumber: 1.9 Consensus size: 52
186032 TTTGAAGCTG
*
186042 GCTGAAAAGCCTATTAGTAAAACGCGCTCATACGTTTTGAAGCTTGCTGGCA
1 GCTGAAAAGCCTATTAGTAAAACGCGCTCATACGTTTTGAAGCTGGCTGGCA
186094 GCTGAAAAGCCTATTAGTAAAACGCGCTCATACGTTTTGAAGCTGGCTG
1 GCTGAAAAGCCTATTAGTAAAACGCGCTCATACGTTTTGAAGCTGGCTG
186143 TGCTCCGTTA
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 48 1.00
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.27
Consensus pattern (52 bp):
GCTGAAAAGCCTATTAGTAAAACGCGCTCATACGTTTTGAAGCTGGCTGGCA
Left flanking sequence: Indices 185542 -- 186041
AATGTCCAAGAAAGGTGGAAAGTCTCCATCTGAATCTGTTCAGCACCTTTTCCACTCTTGTTCTA
GGGTTCCCCATGAAAACGAGCACCCCTATCTAGTGACGGGCTTTGACACGTTCGCTTAGGGCTTG
TTTAGCGTATCAAAGGCAAACCGCTTGAAAGCAAAGTCATCCTTCAACTTCGCTGCCATGTTGTG
CTAAGCAAGTCACATGGTGCTCCGTTCACTGTGAGCAAGCACCTGTGTCGTGCCATGGGTGTTCC
TGAGTGCGGGTACCTTAAGAAGCAGCAAACTTGAAGGTTCATGAAACCTGCTGAAAACTACTGAG
CGCGCTAGCGCGTTTTACTAATAGGCTTTGAAGCCAGCTGAAAACGACTATCAATTCAGGCGCGC
TAGCGCTTTACCTTAGTAATAAGCTTGGAAGCCATGCTGAAAACGTAAGCTAGCGCGCAACGGCT
TTGAAGCAGCCAGCAAGCAACGGCCGCGCAGTAGTTTTGAAGCTG
Right flanking sequence: Indices 186143 -- 186642
TGCTCCGTTAACTACTAACTACAGGTACCTTTCAAAGAAGCTGTGCTCCTGGGATACGAAAATGG
GGAGGGATGGGGATACCAGCTTGAATGCTAAGCAGCAACAGAAGAAGCAAAAGAAGCTTTCAAAG
TATAGTGAATCGGTCCCCCATAGAAGCAGGCCTGTAGATGTACCTTGGGCACACGTGGATGAGAG
TACCACCGCTGACATAAGCGTCACATCCCATGATGAACAAACAACGGTGGTACGATCATTAGCAT
TGAGTCACCTCTATCATACGACATTACACGACGAATAGCAGTGGAACCGTTTGAGACCTCAGATG
CCACCCGGTGAACCAGGTGTAGTATACGGGCTGCTCTGTAGGTAGCTATGAACTCGTATACGAGT
TCAGTGGCAACAAGAGCTGCAGGTGAACAAGAGAACACCGACGCTCTGGCACCACAAGCACTATA
CTGAGCAGTATACGAGAACAGCGGCGACGGTTTTCCCGGGATTAG
Found at i:195975 original size:17 final size:17
Alignment explanation
Indices: 195953--195995 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
195943 GGCAAAGACT
*
195953 TTATAGCTAATTACTCA
1 TTATAGCTAATCACTCA
* *
195970 TTATAGCTAATCATTCT
1 TTATAGCTAATCACTCA
195987 TTATAGCTA
1 TTATAGCTA
195996 GCCTGGTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.33, C:0.16, G:0.07, T:0.44
Consensus pattern (17 bp):
TTATAGCTAATCACTCA
Left flanking sequence: Indices 195453 -- 195952
TTTCAGAAATGAAAAGTCTCTTATATACGTAAAAACCAACGGGAGGGTGGGAATAAGAACCTTCC
TTCAGTCATTAAATCAATATCGGAGTCAGAATGTATAAGCTGTAAACTGATTCTCCCCAACCCCA
CCCTATCCGTTCCTAGGCCGTCGAATTTCTTTCTCAATTCAACATTGATAGGGGCAGGAAAAAAG
CTCAACGGGAAACTCCTTGTTCTATTTAGTTAATGGGTCATCAGTACGAGTTGGAGGATCTTACG
GTTACGGAGAATAGGCATATTGAAGAGCAGGTGTAGCGGGCCAGTTTAGAGCTAACAGTTGGAAT
TGGAAGAGCTGCAAAAGCTACGAAAGCAAGTTCTTACGGAGAAGTCTATGATATTGGTGTACCCG
CAATAGAGATAGTTTAGTCATGTGGGGAGCCCCAACAGAAGAATCGAATCCTCCTTTAGTGCCAA
CCCTGATTTCCAAGCATTTATAACTGACGCATTGGGGCAAAGACT
Right flanking sequence: Indices 195996 -- 196495
GCCTGGTTGAGCTCGAATCATTCTTTATAGCGAAGGTTGTGAGCCACTTATTGGGAGGTTTGGTA
ATTTATACTTGATGGCGGATAGAAAGATCTTCGCTTTATTCGGACAGTGAGCTGGGTGGGATAGA
TATGCAAGGCCGTATATTCTAGCAGTACGAGTGGGACCAACCCTTTCTAACGAATGAATCAAGTA
TACGAGAGCTAATTCGAGTGCTAAGCTTTCGCTATCGGTAATTCAGTGAAACCATCTGAGCCATC
TCCCTCAAATCCATCTCTATTTATAGCTCACTGGGAACATAGTACGACCGGGCACACTCTCACTC
TTGCATTGGGTTGTGGATTGGCTTTACTAGATCGATAAGCATTAGGAGTAAAGGTGGATCCGTCA
AAGTGTATTCGTTAGGGCTTCACTATGCCGGGATAAGAAGCTGGAAAAGCAACGATATTGATAGG
GTCTCATCAAACGGATCAATCATTACTCGAGGTGGACAAGCTCTA
Found at i:222875 original size:26 final size:26
Alignment explanation
Indices: 222837--222886 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
222827 TACTACAGGC
222837 AGGCGCGCTAG-CCAGCTTCAAAAGA
1 AGGCGCGCTAGCCCAGCTTCAAAAGA
*
222862 AGGCGGCGTTAGCCCAGCTTCAAAA
1 AGGC-GCGCTAGCCCAGCTTCAAAA
222887 CTACTGAGCG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 4 0.18
26 6 0.27
27 12 0.55
ACGTcount: A:0.30, C:0.28, G:0.28, T:0.14
Consensus pattern (26 bp):
AGGCGCGCTAGCCCAGCTTCAAAAGA
Left flanking sequence: Indices 222337 -- 222836
CTAAGTAGCACTTCTGCTATTCAATCATAGAATCGATTCCGATCAAGCAAGCAGGAGAAGGCGGT
CCTTTCATCTCTGCCTGCTCCATGCTGTATAGCCTAACCTAAGGATCATGAGCTGGTTGAATGCT
AGAATACATGAGATCTGCCCGGTCATTTCGGTAGATGAAGTAGTGGGAGGTTGCGAAGTGAGGGG
CGTGTTAAGTTGAGAATTTCGAACATTGTAGCATTCTTTTCTAGGTTGGGGTTTGAGTTTCGAAG
TTTCCAGAACTCTGATGGTGAATATACACCAAATCAAATGACGCATCGAGCGAGACCATTCTGTT
CCATTGTGAATGAGAGACGTTTTCGACCAACATCTACTCATATCCAGCTTCGTGTCATTTTTGAA
CACAGCGATCAGCAAGCAGCAAGCGGGGCAGAGTCAAGTTCACTTAAATAAAAAGTCGTGCGCTA
GCCAGCAAGCAACACCCTATTACGTAAAGAAAGCTTACTACAGGC
Right flanking sequence: Indices 222887 -- 223386
CTACTGAGCGCGCTAGCGCAACGGCTGAAGCAGCCAGCAAGCAACGGCTGAAAAGCCGTTGCTTG
CTGCTGCTCGCTTCGGACCGATCTGTGCCTTGATCTCCGGCCATGAATCAAAGATTCCTCCTGGC
GAGCAGGGCCGTGCCGTGAAGGAAACGGCAAAACGAGGTTGCTTGCTCTCAGTCTCAGCCTCCTT
ATCAGAACAGAACGTTCCTTCCGCAACGCAAGGCCGATATCTTTCGTAGCAGCCAAGGATGAGTT
CGATCCATTAGGTTCTTCGATTTGTTCGGAAAAGAAACGATTAACAAGAAAAGATCTTTGATTAC
GATTAAAAGGAACAATCTCAAATAGACCAAGATCCAATTTCGGATCATTTCTTGGTGAACATGAT
CTGCCATAATCTCTTCGATCCCTACATTTATGTGCCAGAATAAAGAGAGATTAGGTAGGGAAGTA
TATACTTTTTTTGAAATGCTAATCAAAGGGGGTGGGAAAGCAGCA
Found at i:233707 original size:24 final size:24
Alignment explanation
Indices: 233661--233708 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
233651 GCAGAAACCG
* * *
233661 GGTTTGGTAGAGACTGGACCTCTT
1 GGTTTGATAGAAACGGGACCTCTT
*
233685 GGTTTGATAGAAACGGGATCTCTT
1 GGTTTGATAGAAACGGGACCTCTT
233709 TCTACGTATG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.21, C:0.15, G:0.31, T:0.33
Consensus pattern (24 bp):
GGTTTGATAGAAACGGGACCTCTT
Left flanking sequence: Indices 233161 -- 233660
AGCTATCAGTGCGGTAATGCCTTGCATCGCGCTATTGCCTTTCTCTGCGCGCGTTTCGCTATTTG
CGCGCAATAGCTTAGTTTACCTGTCTTTGCATCTTCTTCCGATTCGGCGGGAACTGCTTCCCCAC
TCGAGACAACCTTCTACGAGAGGTCAATTTCCTTTGCTTTTCGATCCAGCACCTTACTCTAGCGG
AGTGCAACCAGCAGAGCAGAAAAACCTTCCCACTAGCTGAACAATCCACGCCCTGATAGTGGAAA
AGGCACTAAACAGGGCACAAAACCTGTGACATACTGCGCAACGGGACACCCAGGCTTCAGAGTCA
TAACTTCTACTCGGGATGTCAGAACACCAACCAAATCGGAAACCGATTCGAGTCGGTCTGTCGGA
GGTACCACAACAACTCAACCGGATCTTCTTGGCTATTCTGTCCTAGCGACTGCGTCTCCTTATCC
CTCTGTGGGTGATGGCTTCGAAACAAGTGGCTTCGGCAGAAACCG
Right flanking sequence: Indices 233709 -- 234208
TCTACGTATGCCTCCTCTGTTTGTTGGATTTGTAGGGACCAGGATATTCCTATTCTCATGCTTCT
TTATCTTTTCCCACCCACCGCCCTTCTCCTCAATTTAAATAATTAAGCTGCCTTGCGGTAAAGCC
GTTTATATCGCTAGCTAGCATTTCTCTTTTAGGGTCGGGCGAGCAACCCGTTTCGCCCATTTTTC
ATCCAAACGAGTTAGTCCATTTCGGATTTCCGGCGAACGGTATAGTGGACGGGAAGAGCTCTATC
GTCTAAATTCCCTTTCGATGGAATGTCGTCTTGTCAGCATATACTTCACCGGGTCTTTATGGGCT
ATCACGTACCGTACGCTTGTCGTGGTAAGAAGTAGGGCCTGAGTTTCAATGCATCGAAGGCCAGG
ATTTCACCTTCGGATAGCTTTGCGTTGGCTCACTTGCTCCGACTTACGAAACACGCTTCGCTGTC
TCGCCCAGAACGCAGCGGGTCAGGCACCCCCGTTGCATCAGATGA
Found at i:260760 original size:6 final size:6
Alignment explanation
Indices: 260741--260785 Score: 63
Period size: 6 Copynumber: 7.5 Consensus size: 6
260731 CGAGCCCTTC
* * *
260741 GCCTGA GCCGGA GCCTGA GCCTGA GCCGGA GCCTGA GCCGGA GCC
1 GCCTGA GCCTGA GCCTGA GCCTGA GCCTGA GCCTGA GCCTGA GCC
260786 GGCTCCGGGC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.16, C:0.36, G:0.40, T:0.09
Consensus pattern (6 bp):
GCCTGA
Left flanking sequence: Indices 260241 -- 260740
CGTGTGGCGAACGAAAAGGTGTATGCAGGCTGTTTGTTATGGTCATTTTTGGCGAGCCTTGCTTT
TGTCTCTGGTTTGATGGTTGTACGTGCTAAAAATCCGGTACATTCCGTTTTGTTTTCCATCCTAG
TCTTTCGCGACACTTCAGGTTTACTTCTTTTGTTAGGTCTCGACTTCTCCGCTATGATCTTCCCA
GTAGTTCATATAGGAGCTATAGCCGTTTCATTCCTATTCGTTGTTATGATTCCCCGTCAATGGGT
ATGGAAGTGGGCCCGGTCATTCTTAAGAAAAGGATCGTTTACTTTTTTACTGTGGATTGCTCCCG
TGCTCTGGGACTGGGGCTTGACTTGGTTGGCCCCTATAGTGGTTTTATTTGAGGAGTGGCTCGAT
TTGGTCCTGTCGTCCATGGAAGGATTACCGATTCCCGTTGGAGGCAGAGGTGGCGATGCCGGCCC
TTCGAACCGACGGCTTCTGGATCTCAACAGGATCCCGAGCCCTTC
Right flanking sequence: Indices 260786 -- 261285
GGCTCCGGGCCCGACTCTTCTTTAAAGCTGCAGCTAGAGCGGCGGCTGCAGGAGTTGCGGAAGAG
CGTGTAAGGCGGTTGGGCGCCTCAGAAGTCCAACGGCAGGACGACGCTCTCTTGGAGAGATTGAA
GAGGCGAACATTCGCTGAGCTGGAGAGGGAATGCGAAGCAACCCGTGAGCGCGTGGAAGCCCTGC
GCCGAGCATTTCACAAGCGCTTTCGCTAAAGGGCCTTCGTCTCCTGCCCTGCTCAAAATCAGAGT
TTGATCCTGGCTCAGAACGAACGCTAGCTATATGCTTAACACATGCAAGTCGAACGTTGTTTTCG
GGGAGCTGGGCAGAAGGAAAAGAGGCTCCTAGCTAAAGGTAGCTTGTCTCGCCCGGCTTCAAAAT
GGAAGGGCGCTAGCGCAGTAGTTTTCAGCTTGCTGCATGCTTGCTTACGCGCGCCCTGTAGTTTG
ATTCGCTTCATCTGCTCCAAGGCAGAGCGACTGCCCTAAAAAAAT
Found at i:260764 original size:18 final size:18
Alignment explanation
Indices: 260741--260787 Score: 85
Period size: 18 Copynumber: 2.6 Consensus size: 18
260731 CGAGCCCTTC
260741 GCCTGAGCCGGAGCCTGA
1 GCCTGAGCCGGAGCCTGA
260759 GCCTGAGCCGGAGCCTGA
1 GCCTGAGCCGGAGCCTGA
*
260777 GCCGGAGCCGG
1 GCCTGAGCCGG
260788 CTCCGGGCCC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.15, C:0.34, G:0.43, T:0.09
Consensus pattern (18 bp):
GCCTGAGCCGGAGCCTGA
Left flanking sequence: Indices 260241 -- 260740
CGTGTGGCGAACGAAAAGGTGTATGCAGGCTGTTTGTTATGGTCATTTTTGGCGAGCCTTGCTTT
TGTCTCTGGTTTGATGGTTGTACGTGCTAAAAATCCGGTACATTCCGTTTTGTTTTCCATCCTAG
TCTTTCGCGACACTTCAGGTTTACTTCTTTTGTTAGGTCTCGACTTCTCCGCTATGATCTTCCCA
GTAGTTCATATAGGAGCTATAGCCGTTTCATTCCTATTCGTTGTTATGATTCCCCGTCAATGGGT
ATGGAAGTGGGCCCGGTCATTCTTAAGAAAAGGATCGTTTACTTTTTTACTGTGGATTGCTCCCG
TGCTCTGGGACTGGGGCTTGACTTGGTTGGCCCCTATAGTGGTTTTATTTGAGGAGTGGCTCGAT
TTGGTCCTGTCGTCCATGGAAGGATTACCGATTCCCGTTGGAGGCAGAGGTGGCGATGCCGGCCC
TTCGAACCGACGGCTTCTGGATCTCAACAGGATCCCGAGCCCTTC
Right flanking sequence: Indices 260788 -- 261287
CTCCGGGCCCGACTCTTCTTTAAAGCTGCAGCTAGAGCGGCGGCTGCAGGAGTTGCGGAAGAGCG
TGTAAGGCGGTTGGGCGCCTCAGAAGTCCAACGGCAGGACGACGCTCTCTTGGAGAGATTGAAGA
GGCGAACATTCGCTGAGCTGGAGAGGGAATGCGAAGCAACCCGTGAGCGCGTGGAAGCCCTGCGC
CGAGCATTTCACAAGCGCTTTCGCTAAAGGGCCTTCGTCTCCTGCCCTGCTCAAAATCAGAGTTT
GATCCTGGCTCAGAACGAACGCTAGCTATATGCTTAACACATGCAAGTCGAACGTTGTTTTCGGG
GAGCTGGGCAGAAGGAAAAGAGGCTCCTAGCTAAAGGTAGCTTGTCTCGCCCGGCTTCAAAATGG
AAGGGCGCTAGCGCAGTAGTTTTCAGCTTGCTGCATGCTTGCTTACGCGCGCCCTGTAGTTTGAT
TCGCTTCATCTGCTCCAAGGCAGAGCGACTGCCCTAAAAAAATTG
Found at i:297011 original size:42 final size:42
Alignment explanation
Indices: 296964--297075 Score: 143
Period size: 42 Copynumber: 2.6 Consensus size: 42
296954 CAAAAGAGGG
* * *
296964 TGCTGTTAACGAGCGGAAAGCAGTCAAAACGTGATTGTTTGC
1 TGCTGTTAACGAGAGGAAAACAGTCAAAACGTGACTGTTTGC
* * *
297006 TGCTGTTAATGAGAGGAAAACAGTCAAAACGTGACTGTTAGG
1 TGCTGTTAACGAGAGGAAAACAGTCAAAACGTGACTGTTTGC
* *
297048 TGCTGCTAATCGAGAAGAAAACAGTCAA
1 TGCTGTTAA-CGAGAGGAAAACAGTCAA
297076 TATAACAGCG
Statistics
Matches: 60, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
42 44 0.73
43 16 0.27
ACGTcount: A:0.35, C:0.15, G:0.27, T:0.23
Consensus pattern (42 bp):
TGCTGTTAACGAGAGGAAAACAGTCAAAACGTGACTGTTTGC
Left flanking sequence: Indices 296464 -- 296963
GCTGGCGTTAACGTCAGACTCCATGGAATTTCACAGCCAAGAGCTAACAAGATCGTTGTTAGCTT
TCCAATCACCGTGTATTGGATCTGTTTGAGCGCGTTCCAAAACAAAGTATTCGCCGACTTTCTTC
TTTCCTCAAAGGAACAACTGAACTGCCTGAGACCATTGCAGAAAATTGTTTCCATTTAAGCGATG
AGGAACAATTTGCAGGCCTGGGTTGTCATTTGGCGAGAAACCGAACACTGAATTTGCGGTGATTA
GAGAGGATTTTGAGTGAAACATGATGTTTGTGAAGTACCCTCTGCTGCCATGAGATGTAATGGAG
CAAAACACTAGAACTACCAAGAACGAACAGAAAAAAACAGCAAGTCTTTATGCTGTTAATAGAAC
AAACAACAGGTGTGCATGCTGCTAGCAGAACAAACAAGACGAAAAGGAGTCTAAGAACAAAGGAA
CACACAGCACCAAGAGCAAGCAAAGAAGAGGAAAGCAAAAGAGGG
Right flanking sequence: Indices 297076 -- 297575
TATAACAGCGACGTGTATATGCTGTTAACCAAGAAAAAAAGGGCAAAGTGCGGATTTGCAAGCAG
AAAAAAGGAAAAGAGTTCAGTGTGGAATGCAGATAGAAAGTACGGGAAAAGCACGCAGGACTGCT
GATAACAATAAAAGAGGCAGAGCAGAACTGAAGTAAAACAGTTGTGGCGTCCCAACCGCCCAGAA
GTCGATTTTTAGATTCAAAACAAGGAAATAATGTCAAATAGAGAGCCGGAGGTATATGAACAAAA
ACGACCTGAGTAAAGAGTAACAGATCGAGATTTGGAGGAAGGGCATAAAAAAAAAGTAATGTAAG
AGGAAAAAAGAAAACTGCAAGGCGGATCTTACGTGTGATGCATATGCTCCACGATCCACACGCCA
GTGCTAGGGTTTCTCAGAGCTAAGGAAAGGATCTATTGCTCTGATACCATGTAAAAACGTCGGAA
TGAAGAAAGAATCCTATTCCATTCAAAAGCAAAAGAGTAGCGTCA
Found at i:311770 original size:27 final size:26
Alignment explanation
Indices: 311740--311800 Score: 68
Period size: 28 Copynumber: 2.3 Consensus size: 26
311730 AGAGTAATCA
311740 GGGATGCTTCCAGAAAGAACTTCTGAC
1 GGGATGCTTCCAGAAAGAACTT-TGAC
** *
311767 GGGATATTTTCCAGCAAGAACTTTGAC
1 GGGAT-GCTTCCAGAAAGAACTTTGAC
*
311794 GGTATGC
1 GGGATGC
311801 GATTGATCAA
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
27 13 0.48
28 14 0.52
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
GGGATGCTTCCAGAAAGAACTTTGAC
Left flanking sequence: Indices 311240 -- 311739
ACATCGCCACCGAGATCGTTGAGGCCCCATGAAGACGGCTCTCCTTCACTGGGAAGATCACCGCG
ATCGCTGAGTCTGGTGACCAACGATTCCAGATTATCCAGCCTTTCTGCCATAGTCTCTATGTCAG
CCCAAATGGTCGACCTTGCCATCAAGTTGGGTCACTCGATCCGTCGAGTGTTTCCTTAGCAACAG
CCGCCGCAGACAGCGCTCCACTGCTATCGTCAAGCTTGGACATGGTGCAACAAGAAGAGAATTAG
CAGAAATCGAAAGGATTTACCCAAAACTCCGCTCTGATACCAACTGTCACGCGCACGGGTAGAGA
GTCTGCCCGAGTCGTGCGGCCCCAGGTGACGCCTACTGTAGTGTAGCACCTGGGTTCAGCCTTCT
CCTTGCCGAGTTTCGCTTGTTTCGTTGAGCTCGCCGTTAGCTTCCTTTCTTTAAAGAATAATAGT
TTTGAATATTAACAGCAGCCAAAGACTTTGAAATTAGAGTAATCA
Right flanking sequence: Indices 311801 -- 312300
GATTGATCAAGTATGTTGCGGTCAACACAGCTTCTGCCCAAACGAGGTACATTCATCCCAAACAT
CATAGCTCTAACCGTTTCCAATAAGTATCTATTTTTCCTCTCTGCTATTCTAGGAGTATACGCAC
AAGATCACTGATGAACAGTGCCTCTTGAAATAATATATTGATAAATGGAGTTTGACATGTATTAT
CCTCCAGAATCAGATCGTCAAATTCTTTTAAAATTCCAATACATTGTTTCATATTCCCATTAGAT
ATTTCATGTTCCCATGTGTCCATACGATTCTCCAAGCAACACTCATACCAAAAGTCATATTTTCA
ATGAAATGCCAACACCTGCGCCTTCATTATGCTATAGTGTATTGAGTCAGTTCATAGGTCATCTC
TATGCCACCGCCATCTGCGAGTGAAATAGGCTCTGCTACCTTGACTTTTGCCTTTGCAGGTACCT
AATACCCTAATAACAGGTGGTGGTTACCTACGGTAATTGCCTGAG
Found at i:329028 original size:45 final size:44
Alignment explanation
Indices: 328971--329093 Score: 164
Period size: 40 Copynumber: 2.8 Consensus size: 44
328961 CACGTTTTCA
328971 GCTTGCTCGGATGCGCGTTAGCGCAACGGCTTTCGCGCTAGCCGTT
1 GCTTGCT-GGATGCGCGTTAGCGCAACGGCTTTCGCGC-AGCCGTT
* ***
329017 GCTTGTTGGATGCGCGCGCGCGCAACGGCTTT----CAGCCGTT
1 GCTTGCTGGATGCGCGTTAGCGCAACGGCTTTCGCGCAGCCGTT
329057 GCTTGCTGGATGCGCGTTAGCGCAACGGCTTTCGCGC
1 GCTTGCTGGATGCGCGTTAGCGCAACGGCTTTCGCGC
329094 GTCAGCGCTC
Statistics
Matches: 65, Mismatches: 8, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
40 35 0.54
41 1 0.02
44 1 0.02
45 22 0.34
46 6 0.09
ACGTcount: A:0.11, C:0.30, G:0.34, T:0.25
Consensus pattern (44 bp):
GCTTGCTGGATGCGCGTTAGCGCAACGGCTTTCGCGCAGCCGTT
Left flanking sequence: Indices 328471 -- 328970
AATCAGAATAGGTCCAGTCCAGGGACAAATCAATAGGAAATGCTATTTGCTTCGTAAGAATAACA
ATTCACTTCTATGAAATGAAAGAGTTTCACGGGAATTGTCTTGATCGTCGGATATCATTGATTGA
GAAATAGGAAGAAGTGTTCTCGAACGATTTCCTGCAATTCTTCCCAGTATGGAATGAGTCAAGAA
TAAAGCTACAAGTCTCGATCTATACGAAACGCACTGGGTTTTTGTGTTTCTTTCGGTTTCATTGA
TAGCAGAAGAGCCTTACTAATAGGGTAGGCGGCGGTTAGCCCTATTACGTAAGCACTAGATAGGG
GCCTGAAAACTAGCAACGCCCTATCGTTGGTTTGCTGGCTCGCTTCGCTTTTGAGGCTCCGCTCG
CTGGCTTTGAAGCCATGCTGAAAAACTACTGAGCGCGCTAGCGCGCAACGGCTTTCAGCCTGCAA
GATACGGCTTCAAAGCCGTATCGCGCAGGAGCGCTCACGTTTTCA
Right flanking sequence: Indices 329094 -- 329593
GTCAGCGCTCATTCCGTTGCTTGTTGCTTCTCGAGGACCGCGAGGATTCTTTCTCTCTCAAACAA
AGTATGCTCTAGAATTCTTGTCCAAAACGAAGATGGTTGACTGCAAACCGATTGGGACGCCTCTT
GCTCTCAAGCACGAAAACAACATCCGCCCTACAGCCCCGGGAAGAACAACCACTCTCAACAACAA
CCAGAAGATTGCGATCACCCCTAAATCCCCTTCGCCAGTAGTAGGGGACTTTCAACAACCATGAT
GACGTGCCACTCGTGCTTCTTTCAAGAGAAGCACTTCGCGTCACTCCTTTGATTGGCGGGGTACA
CCAAGTCACACCATTCTGTTCTAACAGGGATCACTCAATACGTAACTATGAATGGTTATTACCAG
TCATTCATACTAGGCGAGGCGGGAGACAAGAACTCGAAGAACAGCAAGCGCGTTAGCAGCCCTGT
CCCCCGCAGCCCCGGCGGGGAACAAGTCAAACAACCATGCTTACC
Found at i:329808 original size:19 final size:19
Alignment explanation
Indices: 329786--329822 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
329776 TGAATCTAAT
329786 CTATTAATACGCTTCGCTC
1 CTATTAATACGCTTCGCTC
*
329805 CTATTAATGCGCTTCGCT
1 CTATTAATACGCTTCGCT
329823 TCGCTCGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.19, C:0.30, G:0.14, T:0.38
Consensus pattern (19 bp):
CTATTAATACGCTTCGCTC
Left flanking sequence: Indices 329286 -- 329785
CAACCAGAAGATTGCGATCACCCCTAAATCCCCTTCGCCAGTAGTAGGGGACTTTCAACAACCAT
GATGACGTGCCACTCGTGCTTCTTTCAAGAGAAGCACTTCGCGTCACTCCTTTGATTGGCGGGGT
ACACCAAGTCACACCATTCTGTTCTAACAGGGATCACTCAATACGTAACTATGAATGGTTATTAC
CAGTCATTCATACTAGGCGAGGCGGGAGACAAGAACTCGAAGAACAGCAAGCGCGTTAGCAGCCC
TGTCCCCCGCAGCCCCGGCGGGGAACAAGTCAAACAACCATGCTTACCTTCCCTACGGTCGGTAC
CTATCACCCGATAGTCCCTTCGTTTCACTTGACTTGAATTGACTTTTAGAGAGTCCCAAGTCTCA
TGCATTTTCACTATTTATCGCACTCGCGTATTTTCTTTCTATTATATAGACTATTATTGTTGTAT
GTATAATGACTTGTTATTTATATGAACTATGATTATGAATCTAAT
Right flanking sequence: Indices 329823 -- 330322
TCGCTCGCTTCAGTCGGGAAGTCACTCATTCAAACCTGCCTTCCCGTTTTCAGTCAGTTAAGTAG
ACTCTAAGAAAGAAGAGAGGTTTAAGCACTTTCGATTCGGTAATAGCCAATAAGACAGTTTGCTC
TTACCGTACCGCTTGTGCGGTCTCTCTCTTGTCGGATTCCTTCCTTTCCGTAGGTAAGTCAGTTA
GAGGACGGAGTAGTGTTTTCACTCTCGGGGGAGAGGGCCATGCCCGAAGTCGTTACCTTAACCGC
AAGGAGGGGATGCCGAAGGCAGGACTTGAAAGAACAGTAGGCTTTAGCTTGTTCAATGAAGTTCA
AGGCTTGACTTTAAAGGGCTTGCTTCCTTGTCCAGCACCATAGGTGGGCACTAGCGCACTAGACC
GGTAACAGAACAGAAAGGATTCTCTCTCCACTGGCACCTGCGGTGAGCCTGACCTTCTTACCTTT
AGAGCGGCTTGCCCAAGAACGAGTACCTCACGAGCTTACTTCAAG
Found at i:358014 original size:18 final size:18
Alignment explanation
Indices: 357991--358030 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
357981 GGTAGTTCGA
357991 TCCTTTTGATTCTTCTCT
1 TCCTTTTGATTCTTCTCT
358009 TCCTTTTGATTCTTCTCT
1 TCCTTTTGATTCTTCTCT
358027 TCCT
1 TCCT
358031 AGTAAACTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.05, C:0.30, G:0.05, T:0.60
Consensus pattern (18 bp):
TCCTTTTGATTCTTCTCT
Left flanking sequence: Indices 357491 -- 357990
CTCTCAGGCCAGCAGTCTTCTACTTCTAGTCGACTGCTCTATGACGGGCTTCCCTGTTTCCTGGG
CTCTGCTCGCTCGTCTACGCTCCGACCAAGCAAGTCATAATTGAAAACGATGTTTCCTTGCCTTC
ATTAAGATTTAAAACGTCGTCGTAAAAAGGCAATCAATCAGAGGAAAATCTAAAAAAATATATAA
AGAAATTTCTCAAGATCTAGATGGATCCCTATCTTTATCTCTATCCACGGAGATACCTATCTATA
TGGAGAGAGATCTATCTATGAATCGATCTAGACTATCCTCTTTCCGGATAGATATGTCCCTATGA
GCGACTACGCCGATCTTTTCTTATATGTTTTGGCCACGTCCGTTTCCGCTCCGAAGAGGAAGGTT
TGGATCTTTCAATCTTATGTCGTGAGGGATGTGACCTATGTTAGGTCCATAAGATACCACAGCTT
TTGGTGTTCTATGATTCACCTCCGAATAATGAGTAGGTAGTTCGA
Right flanking sequence: Indices 358031 -- 358530
AGTAAACTGATGGGGGGATCCGGAGCAATAGGTCGAATTACTATATATATATGAGTTTTTCACTA
AAGGACTTCTTGTTCGAGTAGGAAGATTTCGGTTTTTCTCGTTCCTTCTCTTCGATAAGAATATG
AATTTGAAATGATACAAATTCCTCTTCATTCTGTTGTGCTCCGCGAAGGAACTGCCTAAGCATAC
TTTTGCGGATCCAAACTTCTTTGTTCTTTCTAAGTCTTCTTCTTGCATAGAAGAACGCAACTGTT
GCAAAAACCGGGATTTGAGTAGTAGGCGGCACCCCCTCTGAGTTTTGAGTAGGCGGAACCATTCT
GTTTTGGTTCTTCTCCACATTCTGACCGGCAGGAATTTGCCTATGATTTTTTCAACTGATATGTC
GATATAGAAAGATCTCCTTATTTCTTCACCGCAGGTTCTCGCGTCATTTTCTTGAAAAGAGATTA
GATCACCGTGGGACACTTTCAAATGAGTAATGCTTACCATTCCAT
Found at i:410889 original size:16 final size:16
Alignment explanation
Indices: 410870--410901 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
410860 TGTGGACGAT
410870 TTATAAGATATAATTG
1 TTATAAGATATAATTG
410886 TTATAAGATATAATTG
1 TTATAAGATATAATTG
410902 GAGGACATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (16 bp):
TTATAAGATATAATTG
Left flanking sequence: Indices 410370 -- 410869
CCGGGGCAATGAACCCATTTGAAGTGGCTCATTTCGTGTACCAGAGAAGCCTATCTATATATGAA
CAAGGATTGATTTGACTTCCCATCTAGCTACTCTAGGTTGGGGTAGGTCCGGTGGGGAAGTTATA
GACACCTTTCCATACTTTGTATCTGGAGTACTTCACTTTATTTCCTCTGCAGTCTTAGGCTTTGG
CGGTATTTATCATGCACTTCTCGGACCTGAGACTCTTGAAGAATCCTTTCCATTCTGCGGTTATG
TATGGAAAGATAGAAAGAAAATGACCAACATTTTTGTATTCACTTAATCTTGTTAGGTATAGGTG
CTTTTCTCCTAGTGCTCAAGGCTCTGGATTTTGGAGGCGTATATGATACCTGGGCTCCCGTGGGG
AGATGTCAGAAAATGACCAACGTCGACCCGTCAGCCCGACGTGTTATATTTGGTTATTCACTAAA
ATCCCCTTTCCTTGGGGAGAAGGATGGATTGTTAGTGTGGACGAT
Right flanking sequence: Indices 410902 -- 411401
GAGGACATCTATGGTTAGGTTCCATTTGTATACTTGGTGGAACCTGGCATATCTTAACCAAACCC
GTCTGTTTGCATGGGCTCCCCGCGCATTTGTATGGTCTGGAGAAGCGTCACTTGTCTTATAGTTC
AAAGGCTTTATCTGTCTTTGGTTTCATCGCTTGTTGTTTCGTCTGGTTCAATAATACCGCTTATC
CCAGTGAGTTTGACGGGCCCACTGGCCCAGAAGCTTCTCAAGCTCGACGCATTGACTTTTCTAGT
TAGAGACCAACGTCTTGGGGCTAACGTGGGATCCGCTCAAGGACCTACTGGTTTAGGTATATATC
TCATGCGTTCCCAGGTCATTTTTGATTTGAGGAGAAACTATGCGCTTTTCAAAATGGTCGGAAAA
AATGCACCGGGTTTCAATTCGATTTCCGGCTGGCTGGTTTTGATGCAAAAAGACAAAACGGGATT
GGATTTCCACTCATAAGGAAGGAAGGTTAGATACCTTTGACAACC
Found at i:412124 original size:44 final size:44
Alignment explanation
Indices: 412061--412149 Score: 151
Period size: 44 Copynumber: 2.0 Consensus size: 44
412051 CCCATCCTTC
* *
412061 AATATCATGATTGGGTCGACCAGGTCAGGCCAGATCATGAGTGA
1 AATATAATGATCGGGTCGACCAGGTCAGGCCAGATCATGAGTGA
*
412105 AATATAATGATCGGGTCGACCAGGTCAGGCCCGATCATGAGTGA
1 AATATAATGATCGGGTCGACCAGGTCAGGCCAGATCATGAGTGA
412149 A
1 A
412150 TAGAAAATCG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.21
Consensus pattern (44 bp):
AATATAATGATCGGGTCGACCAGGTCAGGCCAGATCATGAGTGA
Left flanking sequence: Indices 411561 -- 412060
GTAGAATCTATCTCTCAGCGATTCCTTTCTCCGCTAATCACCCCTTCCCAACCAGCCCGCCCGAT
CGATCTTGTAAGATCGGCGAATTCATAGGGTGAATCTGGTCCGAAGTTGTCGGAACGAATCGTTT
GCTTTATCGAACAAAGCGTCTATTAGGGGTCGTCGGTTGGCCCCTATTTTCAACCATTACAGCTG
GCGTCGACCAGCTTTGCGATACGGACGGACACGAAGAAGAACGCAGGCAGCGGAAATGCAAAGAG
AAGAGCAAAGATTCCCGACCCAGAGCATGTTATTGACTCAACCACAAATCTGTTGAATGAAGGTA
GCTTGCTTACTCTCAGCCACTAGTTAGAATGACTTCCCTTGACTTCGCTTATGCTCAGTCAAGTG
AGGCGGGCTAAGATTCCATTCGAAGTAACGTAACAGGATTCGATTATGCACCATCTTCAAAAGAT
CTCTTCTCGGGATCCGGAGTTTTTCGAGAAAAGGTCCCATCCTTC
Right flanking sequence: Indices 412150 -- 412649
TAGAAAATCGAAAACGTACATTGCTGTTCCAGCTGAAATACTTGGAATAATTCTACCACTTCTAC
TAGGAGTAGCCTTTTTAGTGCTAGCTGAACGTAAAGTAATGGCTTTTGTGCAACGTCGAAAGGGT
CCTGATGTAGTGGGATCGTTCGGATTGTTACAACCTCTAGCAGATGGTTCGAAATTGATTCTAAA
AGAACCTATTTCACCAAGTAGTGCTAATTTCTCCCTTTTTAGAATGGCTCCAGTGGCTACATTTA
TGTTAAGTCTGGTCGCTCGGGCCGTTGTACCTTTTGATTATGGTATGGTATTGTCAGATCCGAAC
ATAGGGCTACTTTATTTGTTTGCCATATCTTCGCTAGGTGTTTATGGAATTATTACAGCAGGTCG
GTCTAGTAATTAGGGGCGGCCGTTCGGTCGCCTATGATACTAGGACCAATGGGTCAAAATGGGTT
TGTGCCGCAGGTGTTGAACGATCTACTCTACACAGGTGTGGGCTT
Found at i:413089 original size:5 final size:5
Alignment explanation
Indices: 413081--413112 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
413071 CCTACCCGTA
*
413081 TATAC TATAG TATAG TATAG TATAG TATAG TA
1 TATAG TATAG TATAG TATAG TATAG TATAG TA
413113 GGCGAGCGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.41, C:0.03, G:0.16, T:0.41
Consensus pattern (5 bp):
TATAG
Left flanking sequence: Indices 412581 -- 413080
AGGACCAATGGGTCAAAATGGGTTTGTGCCGCAGGTGTTGAACGATCTACTCTACACAGGTGTGG
GCTTACAGGGCTAGGGCTCATAAACCCTTTCTTTCATTCATCAATAGGGCCCTGGTCGGTCACTT
TTCCGGGCCGGGATCGAGAAGTGGAAGTCATAAAAAGAGATGTTTCTCTTCGCACCTCAGATCAA
GAGGAAAGGTAGCTTGTCAAGCTGGCCTATATAGATATATAGCTGTCTTTTAACCGGCTGTTCTT
CTTTGTCAACGCTACTGACGGACCAGCTGAAAACGTAAGCGCAAGCGCCCTATCACGTGACGGCT
CCCGCCGTCCCCCAGACCCCAGAGGCTCCCGCGCCTTCTGAAGAAGCTGCTTGCTGGTTCGCCTA
CTTTACTTATGAAAGATAATGAGAATGGGTTCTTCAAAAGGAAAAGGCGACGAAAGCCCCTACAT
TAGATTAGTAGAAGTCAGCGGCTGAGTTAGCCTAGCCTACCCGTA
Right flanking sequence: Indices 413113 -- 413612
GGCGAGCGAGTTAGCGAAGACGCGTCAGGCTAATAGATAAGAGAGCGTCGGTGCGTAGCCTTCAT
TCTACTACGCTACGCAAAGGTTACGAAGTCACGTCAGCTCGACGTTAGGAGAGTAAAGGGGAACA
CCCTACATAGAAGAACCGCTGTTCGCTGACTTTCTAAGGTATAACCTTTCGCTCCCCTACTGAAA
AGGGGCAAAGCCGCTTCGCACCACTGATAGACTACTTAAGATTCAATTCAAAAGGCGCTACTTAG
TTTCGCAAGCCTTTGTCATTGTCAGTCAACTAAGTAGGGCGAACAGCCCCTGCGAATCCGTAAAT
CTGAGGAGCATGCCGCAAAAAAGGATGGTCCCCTATGCATTTCATTCTTTCCGGAACGGAAAAAA
AAAAAGTACCTTACCCCCATCATGGTGAACCTCTCCTTGTGATCGGGATGAGGTAGATGCCTCCC
AGCCGGGGGCGGATCGAATCGGAGTTTCCTTAGGTAGCCACCGAC
Found at i:422082 original size:17 final size:17
Alignment explanation
Indices: 422060--422093 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
422050 TCCGGTCAGC
* *
422060 AACATCGTCGATCATGA
1 AACATCATCAATCATGA
422077 AACATCATCAATCATGA
1 AACATCATCAATCATGA
422094 CATCTCGGGC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.24, G:0.12, T:0.24
Consensus pattern (17 bp):
AACATCATCAATCATGA
Left flanking sequence: Indices 421560 -- 422059
CCGCTAATAGATAAAATTCGGAGGGTGAACGCCATCTAATCCGAATGGGCGGAATGGATAGAGAT
CAATCGATTCTTTCTCATGTACGGCTAAGCCTTGCAGGTCATTTCAGTCTGGACCCCGAGTGATG
GTAAAGCGCAGTCAGCCGAGACCCTGACAGAGGAAAGAGTCTTGAGGAGTCCAACGTTCGGCCAG
GCATAATTATTCGTGCCCACTAATCGGTTTACTCGCCCGCCACCCACCAATCGAATTCCCGTCTC
TCTCCTTCTTCTATTTCTTTCATCTACTAGCTGAGATCGGTATCACGTTTTCAGATCCATCCCAT
CCTTCCGGCTAGCCAACCACTTCTCGACTCGTAGTTCCTATCCCCGGCTAGGGACATTGAATCAG
CTAGGAGATCTGTTTCCGGTTCCCATCCATAGGAGAGTGACGGATAAGGGGCGATAAGGATGAGG
AATCAACACAACAAACGAAGCGTCGACTATAGTTTTCCGGTCAGC
Right flanking sequence: Indices 422094 -- 422593
CATCTCGGGCGTTTCTTCGAAGGAGCCTCATCCCTCCCCTTAATGAAATAGTAATATTCCATCAA
ACATCCATAATAGGCAAAGTCATAGGGAGATGTTTCAACAACATGTGCACTTCTGGCAACAAATA
CATTCTTTGTCACAGGATCATTATCTCCTATATCATTCGGCCTGTGAAAATGCATTTGGCAGAAG
TGGCATCTCATTCTTGCCTCTTAACACCTGGTACACATGCATATGCTTTACTTGCAAATATCTCG
AAGTGACCGCTACCCCTTCTTTATTATAGGGCTATGGAGTCACTTTCACTTTAAGCTTCAAAATG
TATGCGCGCGTTTTACTAATAGGCTTGACTTGACTCCGCCCAAGTGCTTGCTGGCTGAAAAGCCC
TTGTATAGTAATGGTGCGCGGGAGCAGCGACGCGTAGGCCCCCGACGCCCCCGCGCGGGAGCCTT
CTATTGATAAGGCGCCCCTATTAGTAAGGCTCTTCTGGATAGCTG
Found at i:433919 original size:25 final size:25
Alignment explanation
Indices: 433890--433940 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
433880 ATTAGCGGCA
* * * *
433890 ATGGAATAGTGATAATTAGATCAAT
1 ATGGAATAATGAGAATGAAATCAAT
433915 ATGGAATAATGAGAATGAAATCAAT
1 ATGGAATAATGAGAATGAAATCAAT
433940 A
1 A
433941 ATGAGCATTC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.49, C:0.04, G:0.20, T:0.27
Consensus pattern (25 bp):
ATGGAATAATGAGAATGAAATCAAT
Left flanking sequence: Indices 433390 -- 433889
TCTTTGTTGATTTCCTCTCAGAGCCTTAAAAGGAAAAGGTTGGGAGCTTCCTTGAGCGAATCGCC
CACTCACCATCTTGTAATGCATTTGCAATATCTCGCCCGACCCTCTCAAAAACTCTGTACTTCCT
TAGTCCCCACCCCGGTAGTTTCTTGGTACCGACATGCTACGTTCGAACGTGACTATCAGATATTA
TTGCCTCGTCGAAAGCGATATCGACGTTTCTTCGACCCTACCTAAGGAGTGCCGTGTGTTGGGTG
GGTGGGCCGAGCTTGCCTAAGAGCAGGTGTTTCCCAAATCCCTATCCATCCTTTCCCGTTAGAAT
GAGGCGCGTTTCCATCTATCGGGAATGTTTGCTCTCGAAATGCCCGCCCGGTTTCCAAATCTCTA
TCTACTACAACTACTAATGAAGTCCATCTCTTTCAATCTCCTTCTGATTCTTCACTTCAGGCAGG
CTACATCCCGCTTAAGCGTTACTTGGAACAACAGCATTAGCGGCA
Right flanking sequence: Indices 433941 -- 434440
ATGAGCATTCGGCTATCGTTCCTTCCTCCTGGTATACTGAGCCCACCCTCTCTAAGGTGGGGAAA
GGGGTCTACTGATCATCCAGGTACCGCTCCTTTTCAGAGATAGGGGCATTCCGACATCGGTTTAC
TCCTCTTTAGAGGAGGAGCATTCTACTATTGAAAACTCCTCCACTAGACCTACTTTCTAGAGTCG
TATATCTATCCAATATGAGGCCGATCCAACCGAAAGAGCTATATAAAGCTCCTCTACTCTTCATG
CGCCTATTTTCCCAGATGAGCCTCCCATTTGATCAATCGGAAATCCTCTAGTTGCATGATGAGAG
AGATGAACCGAGAGGTGAGGAGACCCGTGGGGAGGAAGGAATACACCCCCGCAGTTAAGAGGGCA
GTCCTTAAAGAACTCCAATCTTTTTTTTCGGTCTAGTAGTCTTCGGTCTTGAATGCATAACATAA
ATAGATGAGGAGCATTTTTAGTGGTACACTCAATCGGTTCATCAT
Found at i:444853 original size:20 final size:19
Alignment explanation
Indices: 444818--444855 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
444808 GTTAGGCCGA
444818 CTACTCTACTTACTATAGG
1 CTACTCTACTTACTATAGG
444837 CTACTTCTAGCTT-CTATAG
1 CTAC-TCTA-CTTACTATAG
444856 TGGCCCTTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 4 0.24
20 10 0.59
21 3 0.18
ACGTcount: A:0.24, C:0.26, G:0.11, T:0.39
Consensus pattern (19 bp):
CTACTCTACTTACTATAGG
Left flanking sequence: Indices 444318 -- 444817
TAGTACGGGCCCTCTGACTTCCAGCTATGTGCTGTGCGGCTCCCGCGAAGCGAATGAAGGAAGCT
CGAAGCTTTCCAAACCCCGCGGCGGCTTATCTTATGTAGTGGTCGGCCTTATAAAGCTCGCTAAG
CTTCGCTTCCCCCAGACCCCCTAGTAGTCGGCATTCTATAAGCGACGTCGTCGAGTCTACGAAGC
TTTGCTTCTTGTAGTCGGCCCGTAATGCAATGCCTCCTTCATTTGCTTGCCTCCTTCCAGCCCAG
AATGCTTGGCCTCCTGCGCCAAGTCGATCTTTAGGCTTGGCTTCGTCCCGGAAGCGAAGCTTCTA
CGACGAGTCGCTTCTCCCTTCTCCACTCTCTGGCGGAGAAAGCTCTTCGAGCTTCCGGGTGAGCT
TACGCTTACTCTCAGCCTCTTTGATTGGTAGGCGGGCGGGCTAAGCCCCTACTTAAGATGAAAAT
CAAGGGCAACCTTTTGATTATGTCGTGACGCTTTGGTTAGGCCGA
Right flanking sequence: Indices 444856 -- 445355
TGGCCCTTCCGCTTTGGTGTAGTTGTAGTTTGTATTGGTACTGAATGAACATATCAAACAAAGGC
GAGCAGTATAAGCCCTTCTCCGGCCTGGGAAAAGCAGCGAACTCTATAAGCTAGGGCTTTGTTCA
CCTTTGGACACGAACACTATTCCGTTCTCAGCGGAAACCCGCCTTAGAGATTGAACGTCGACTTA
TCTTATTGCCGTTCCATCTAAGACAGCGCTGATAGCTTGTAGTGAACAGCCCCTTGCTACTATGA
TAGAGAGCCGTCTGCTTGCTTGTTGCCAAACCAACCCTGTTCGCCTTTCTTTTGAATCAAAGTAG
GTCGCGACTGTTGTATTGTAGTCGGTCGGGGAAGCTACCGCTTCGTAGACAGCTCCGCTTCCTCG
TCTTGCTTCTGGCAAAGCTTCTACTTTGCTTGCTTCTCTCGCGCTTGCTTGCGCGAAGGCGTCAG
ATTTTCGCTAGGTCCAAAAGCTTCCGTCAAAGCGAAAGATCTGAT
Found at i:464819 original size:15 final size:15
Alignment explanation
Indices: 464795--464825 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
464785 TAACGGTGTT
464795 TCTAGCTCGTGAACC
1 TCTAGCTCGTGAACC
*
464810 TCTAGTTCGTGAACC
1 TCTAGCTCGTGAACC
464825 T
1 T
464826 AAGGCATGAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.29, G:0.19, T:0.32
Consensus pattern (15 bp):
TCTAGCTCGTGAACC
Left flanking sequence: Indices 464295 -- 464794
TCTCCTTCCACATTAAAGGTTTTAGGCTTTTCGAGACTTTTCTAGAAACATTCATTCAAACACAA
GGCACGGCGCCTTTTCGAGATTCGATCCATAGGATAACTTAAACCTTTCGAGGCACAGCACCTTT
TCAAGATCAACCCTAATTAGGCACGACGCCTTTTAGTCCAATCTTCAGTAGGCACGGTCCCTTTC
CATAGGTTAATCACACCTTAGGAAATCACAATGTCTATCTCCAAAGTCGGGTACAGGGCCCAGCG
CCCTTCCCAGTCATGGTCCAGCCCTGTCTATTTTCTAGGATTAAGTCCCCTTAGGATCAGTTTCT
CTCTAGGATTAGATCCTTTTCCGTAGGATTACTTCTTTCCATAAGGTTAACCAGGTCCATTCCAA
TTCGATAACCAATGCAATATCCTGTACCTATTTCCGGAACATCGTCCGGTGCCAATATTCCTTCT
TTTTTTATATACGTTCGCACGGCAGATAAATGGTTTAACGGTGTT
Right flanking sequence: Indices 464826 -- 465325
AAGGCATGACAGGACTAAGGAAGTCTTTCTGACTTAGTACCGTATGTTCTTAGTACCAAACTTCC
TGCACTAAATGCGTTTTGATTTAGTAGCAACTCATCATTACAGCCCCGCCATGACTGCGAGTGCC
TTTTATTAATCTTTCCTTGCTCTATTGCTAGTGGGTCAAATTTATCTTCCTTTGAAAGAGATCTG
CCACTTGGGTGTGAACGGCTTTCCTATGCGGGTAGACTTCAGCTCATCAGATCAGTGTTGTTCAG
TATTCAGGTCTACTGGAGTTGCATTTTCTTTTTCTTGCCATTGCTATTGATACATATTTAGGCGG
AGCAAGCAGAGCAAGGGATGCCTCAAGACGGGTAAACCAATTCTATGGCCAAAGATCTGTATGGA
AACCTTGTTTTGAGATTCCCCGTAAGAACCTGAGAAGTAAGAAACTAGCGGTTAGAGAGCCACGT
TCCTCTCTCGGAGTTGAGTTACTCCATTCCTCTCTGTATTTGAGC
Found at i:470255 original size:21 final size:19
Alignment explanation
Indices: 470229--470281 Score: 61
Period size: 21 Copynumber: 2.6 Consensus size: 19
470219 CGCGCATACG
470229 TTTTCAGCTGGCTCGCTTCGC
1 TTTTCAGCTGGCTCGC-T-GC
*
470250 TTTTCAAGCTCCGCTCGCTGC
1 TTTTC-AGCT-GGCTCGCTGC
470271 TTTTCAGCTGG
1 TTTTCAGCTGG
470282 TTCCTTTTCA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
19 1 0.04
20 4 0.14
21 12 0.43
22 5 0.18
23 6 0.21
ACGTcount: A:0.08, C:0.32, G:0.23, T:0.38
Consensus pattern (19 bp):
TTTTCAGCTGGCTCGCTGC
Left flanking sequence: Indices 469729 -- 470228
CGGGCGAGACACCAGCTTGTCTTAGCCAGCAAAGCCCCATTCGTCGTGTTCAAAATTTTTGAGGC
CTAGCCCGCCTTCACTTTTCCTGGCGCACACCCTTTCCCACCTAACCAGATGGAAGCGGTGTCTC
TCTTCCGCTCCAGACCATAGGAAATTTCTTTGCAGCTTTTCTAGGGCCTCTAGAACCTGGGACCG
TCGAAAACAGAAAGCATTTCATTTAGAGAAGCGTCGAAGCGAGGACTTTATGAGTTGTGCCCGGC
CCGCGATGGTTAGAAGCTGGCCCTTCCATGCTGCCAATTTCTCTTGAGCACGCTCAACCACAGTT
TTCCATATGGATGTTGACTGCCTTACCGGAAGAAGAGGCAGTCCAAGATAAGTGGCTGGCCAAGT
CCTTCGGGACAGCCCAAAATCGCTTTGATTCTCCTTTCCTTTTCTTTTGGAGCGACGAGTTGATA
AAGAAAATCCTGCTTTTCAGCCTATTAGTAAAACGCGCGCATACG
Right flanking sequence: Indices 470282 -- 470781
TTCCTTTTCATCACACAATGCTATAATGTAACCATACATCCACGGTCTGAAATATGTTCGACTCG
GCTCTCCACCCCGTGGTAACAGTGTTATAGCATCTGCGATTACTGCGATAAAACGTTCTACAAGC
CTTTTGTTATTCCCTTCTCCGAATCCCGGACGAGCCCCTCCCCGACGTACTCTACGGCTTTGGCT
CCCTCCTCTGCGAATCTCCTCCGGCTTTCTGACCCGGTGATTCTATGCAGGTTATCCGGGGACAG
AAAGCCATTCCGATAGCTGAACCAGTCACTTTCAGAAAAATCTTTCCATCAGAACTAATTGATTT
CCGATGTTGGAGTATGCTCTCCCAGGAAAAGGAGCTTCCTTACATGGATCGAGTTCCAAGGGATC
GGGAGGAATCGAACCTCCCGGCCGGCTAGCCCGCGTTCCAACCGCCATCGGGTTATTGCAGTATA
GGTCGGCTAAGGTGGTGACTCATAAGGCAGGCTTTTCCCCGGCTG
Found at i:492521 original size:21 final size:21
Alignment explanation
Indices: 492497--492538 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
492487 GGGTACAAAT
492497 AAGCCAGTAAAAGACAAGTAG
1 AAGCCAGTAAAAGACAAGTAG
* *
492518 AAGCCAGTTAAAGACGAGTAG
1 AAGCCAGTAAAAGACAAGTAG
492539 GCAGGGTACT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.48, C:0.14, G:0.26, T:0.12
Consensus pattern (21 bp):
AAGCCAGTAAAAGACAAGTAG
Left flanking sequence: Indices 491997 -- 492496
GGGCGACGAGACGCCTTGTCCTTCCTTTTGGTTTAGCCTTTCGAGTGGACTTTTCTCGAGAAAGC
CGAAATGCAGGTTGAACACTCTCTGTTACAGTTTGATGTCACTTTTATCTTTTTCGTTACTGGTG
TATTGCTAGTGGACTCTAATAGCTAGTGGACTTAAAGAGCGAGCTGTACTGGTAGCTAGCTTACT
AGTACTGGTGACTGTAAGAGCTGTACTGACAGACAGAGCTAGTGAGGTCCTCCAGACCGAACGAT
TGCTATTGCTGTACTGTAAGAGCTGTACTGGTAGCTATTGCTGCTTGCTGTAAGAGCTAGTGCTG
TACTGGTGACTGTACTTACACAGCTGTACTGGGTACTTACTTGACTGGGAAAAGCAAGCGTCTGA
TCAGATCAATCAAGAGATAGGGGTTCGGCCAAACATCTTTTCCTAAGCAAGGACTACGCTGGCGA
GTTACGATTGGCCGAGGGAGTTCCATCATGTAGCTGGGTACAAAT
Right flanking sequence: Indices 492539 -- 493038
GCAGGGTACTATGAAGCCAGTGGGGTACGTAAACGGGGACAGATCACATGGTTTTGTACTGGTCA
GCTTTGGGCTGGAGATTGACGATTGGCTGAGGTTTGAAATGATCCATGTTACGGAACCAAGACAC
TGCTGGGTTAAGGGCCTCCAACGCCTATAAATAGAAGCTTCTTTCTCTACTAGCTGCACCGCAGC
ACCTGCTCACCAAGTGGTTGAACCACTTGCCTCGCTAACCGGAAACAACCCGCCTCATATGACAG
TAAAGAAACTCCCCGCTAAAGCTATGTCTTTTCATTGCTGTCATAGGTTAGCGGTAAGGAGTGAA
TTGATGAGAAGCGGGCCGCGCCTTCATTGAACTCAATCTGTAGCTACTAGCCGCAGCTCCACCGC
TTTCATGTTGAGAAGCGGCCTGCGCCTTAACAGCTGCTTGCCGTGTTATAACAGTTGATGCGGGG
TGGGCAATGAACTGTTTCAAGAGCTACACCGCTTTCATGAACACC
Found at i:507723 original size:12 final size:12
Alignment explanation
Indices: 507696--507728 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
507686 GATTTTCCTT
507696 CACCCC-ACCCC
1 CACCCCTACCCC
507707 CACCCCTACCCC
1 CACCCCTACCCC
*
507719 TACCCCTACC
1 CACCCCTACC
507729 GAGACGAGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.18, C:0.73, G:0.00, T:0.09
Consensus pattern (12 bp):
CACCCCTACCCC
Left flanking sequence: Indices 507196 -- 507695
GAAGACGAAAGAAGAAGAGGAAATGCCGCTCAAAGGAGAAATGCTGCCGGAAGAAAGGAAGACTC
GAGTTTCTGGAAATGTTTCAAGAGGAGAAGTTCATCCCATTTCATTTAGGCGAGAGGATAATTAA
TATGGGAGAAGCGGGAAGAGGAAAATTCAGAAAAGAGAGAAAAGAGATAGAAAAGAAGAAGATTG
AATAGATTATCCTGAACCTGCCTCCGCCGCCGTCGCACGAACCATTTACGATGGCCGCGTCTGGG
TGGATTGTGGTGCTACCATTCCTTTAGGATACCTTTCGGCTTCAGTAGAAACTCTTCCCCGTCAG
TTTTGATAGATATTGATAATGTACGGTAACTCAACTTTGAGTATTGAATTGACTTTGTTGGTTGA
GTGGAGTTACGGTAGTTCAATCTATAAAGGAAGGACAATCGATCGCACTTGGCTCAGAACCACCT
AACGGTGGCTCTTTACTCCCTCAAGACTTGCTTCTGATTTTCCTT
Right flanking sequence: Indices 507729 -- 508228
GAGACGAGGAGCTGTGAGCTGTGAGCTGCGAGCAAGGCTGCTCTGCTCCGGAAAGAAAAGAAGCC
AGCAGGTCCTTTTCCGCTTGACCGCTAACTCATGAGCAAAGCCGCCTTTGCCGCCCCTCATGCTG
CATGAGCGGATCTTCACTAAAAGCCGGCTCTATTGGCGGATGGATAGCGCCCTCACTCTGCCATG
AGAACAGACGAAAGCCGCACTATCTCCTTGCAGCTTTGCCTGCCGCCCTTCGGTGGTATAGTAGG
ATGGATAGCAAAGCCGCCTTCGGCCCTTCGCGTCAGTAAGCCCTCTTCGAGCCTCTACTGAATTC
CGCTCGCCCCGGTCCGTCAGTAGCGTTGCGTTGACAAAGGCAACCTTTGATTATGTCGTTACGGT
TTGTTCCGGCTCGGTTGACTTTGTCAACGACACAAGCAAGGAGTTGACAAAGGAGAACAGCCCTG
CCCTTGCTGTTAGTCTGCTACTTCCTTCGAGTTGACAAAGGTGAA
Found at i:521740 original size:51 final size:51
Alignment explanation
Indices: 521664--521868 Score: 410
Period size: 51 Copynumber: 4.0 Consensus size: 51
521654 GTCTCTTCAT
521664 CGGCCCCAGATGACCAGGGTCCGCGGCAGCAGGAGGAAGTCGTTCAGCCAA
1 CGGCCCCAGATGACCAGGGTCCGCGGCAGCAGGAGGAAGTCGTTCAGCCAA
521715 CGGCCCCAGATGACCAGGGTCCGCGGCAGCAGGAGGAAGTCGTTCAGCCAA
1 CGGCCCCAGATGACCAGGGTCCGCGGCAGCAGGAGGAAGTCGTTCAGCCAA
521766 CGGCCCCAGATGACCAGGGTCCGCGGCAGCAGGAGGAAGTCGTTCAGCCAA
1 CGGCCCCAGATGACCAGGGTCCGCGGCAGCAGGAGGAAGTCGTTCAGCCAA
521817 CGGCCCCAGATGACCAGGGTCCGCGGCAGCAGGAGGAAGTCGTTCAGCCAA
1 CGGCCCCAGATGACCAGGGTCCGCGGCAGCAGGAGGAAGTCGTTCAGCCAA
521868 C
1 C
521869 CCGACAAGCC
Statistics
Matches: 154, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 154 1.00
ACGTcount: A:0.23, C:0.32, G:0.35, T:0.10
Consensus pattern (51 bp):
CGGCCCCAGATGACCAGGGTCCGCGGCAGCAGGAGGAAGTCGTTCAGCCAA
Left flanking sequence: Indices 521164 -- 521663
CGAAAAGGTGTATGCAGGCTGTTTGTTATGGTCATTTTTTGGCGAGCCTTGCTTTTGTCTCTGGT
TTGATGGTTGTACGTGCTAAAAATCCGGTACATTCCGTTTTGTTTTCCATCCTAGTCTTTCGCGA
CACTTCAGGTTTACTTCTTTTGTTAGGTCTCGACTTCTCCGCTATGATCTTCCCAGTAGTTCATA
TAGGAGCTATAGCCGTTTCATTCCTATTCGTTGTTATGATTCCCCGTCAATGGGTATGGAAGTGG
GCCCGGGTCATTCTTAAGAAAAGGATCGTTTACTTTTTTACTGTGGATTGCTCCGTGCTCTGGGA
CTGGGGCTTGACTTGGTTGGCCCCTATAGTGGTTTTATTTGAGGAGTGGCTCGATTTGGTCCTGT
CGTCCATGGAAGGATTTCCTCTTCCGTCAACCACCTCCTCGCCGGCGCCCTCGATATCAAGCAGG
GTGTCTCCTGGATTGATGAGTATTTTGGTCCGGAGGTCTCTTCAT
Right flanking sequence: Indices 521869 -- 522368
CCGACAAGCCTCCCCTCGTCTTCTACCGGCGTCGGGCCCACGCTGGAAGAACTCAGATCACGGCT
GTACTCTTTCCTTTCTTCCTTTTCAAAGATTAAACCTCGGTCTTCTTTTATTATTAGTACGGAAG
AGGAGCTTGGGATCGCCGATGCGTCTCCCGAAAAGCTGGCGAAAATCGCCCAGATGATCGGTCGA
CTTACCGACGGCCCAAACCGACCAAATTCGGGCCAAAATGCCAAAGCACTTCTGACAATGGAAGT
GGAAGAATGGTCAAAGGCAAACGAGGGGAGCCGTATGAGGCGGAAGCTCCACGTACGGTTTTGAA
GCCGAGCGACCTCGTCTTGCTTGCTTCTGGCGAAGCTTCTAGCACTATATAATAGGCATTCTGGT
ATGGTAGGAATACTACTTTTAGGCCGACCATTACATAGGAGCGATAGCGAAGCCAAGCCGTATAA
AGGCGAGCAGCCCTTATAGCAATAGCAAACGGCCTACTTATAGCC
Found at i:618355 original size:39 final size:39
Alignment explanation
Indices: 618312--618390 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
618302 TCTCAGCAGA
618312 AGGCTGCTCTCCTATAGGAAGATCCTGCGAAACCTCAAC
1 AGGCTGCTCTCCTATAGGAAGATCCTGCGAAACCTCAAC
* *
618351 AGGCTGCTCTCCTATAGGAAGATCTTGCGAAGCCTCAAC
1 AGGCTGCTCTCCTATAGGAAGATCCTGCGAAACCTCAAC
618390 A
1 A
618391 ACAGAGCCAG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (39 bp):
AGGCTGCTCTCCTATAGGAAGATCCTGCGAAACCTCAAC
Left flanking sequence: Indices 617812 -- 618311
GAAAGAAAGAGAAGTAGAGTAGGATGAAGGAAGCAGAAGTGATAGGCAAGCGTGCCTGGAAGCGC
TAATGCTATTGTAGCAGCTCCTTAGCCTCCATTAACTTCTTTCAGTCCTCCATTCTCTCTTTGGA
AATGTGTATAACCATACACTCATCTCATACCAGATACTGAATCTAGGGCTAAGTTCCAATCTTTC
AACCTTTGGGATTTCATCGCCTGGAATCAACAAGCAGAGGAGGAAGCCTCGTGGAAAGAACTGGG
CTCCTGGTGGAATGAACAGTAGAGACAAAGGCACGGTGTTTTTCGAAAAGAGTCATAAGATACAA
AACGATCAATAGGAAATTGAATGCGATCGGATCTACGTACCTTATCAGGACTAGAAACAGGAAGA
GGATGATCTTCGGGGACTCGAGAGAGAACGGGCAGCTCAACGGTTGTTGGCACAGGTCGGGGTCT
CCTAAAATACGTCTTAAGTGGAGGTGGATCCACTCTCTCAGCAGA
Right flanking sequence: Indices 618391 -- 618890
ACAGAGCCAGTGGTGTGAGGTATCGGTGCTTGATGAAGAACGGAAGAATGCGGTATCACCACCTG
AGTCATCATAGGCTCCAAACCATCAAGTGAACTCTCCCCTGCCGGCTCGATTCTGTCATCCAATC
TAGATGGCGCCTTGGTAAAGGAGAGAGATCCTCATAAAAGTGACATGGCGATAAATATGCACTTT
TCCAGTGGTAAGATCATAGCACTTTTATACCCTTTCTGATCTGCAGGGTACCCCAAAAGACGCAT
GCAGTGGATGTGGGAGAAAGCGTCATGGCGAAGACTGTCGGGTACATGTATATAGCAAATGCACC
CAAAGACTCGCAGATCTGAATAGGAAGGTGGCTGTCCCAGGATAACTTCAAAAGGCGATCTGTTT
CCCAACACAGGAGTCATGGTCCGGTTGATTAGATAGGTGGCAGTTAACACTGCTTCGTTCCAAAA
TCTCTTTGGAACATCCTTCTCAAAATTAGAGATAGGGCCTTCTTT
Found at i:637879 original size:13 final size:13
Alignment explanation
Indices: 637861--637886 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
637851 AAGACAAAAC
637861 CACTGTCTTAGTG
1 CACTGTCTTAGTG
637874 CACTGTCTTAGTG
1 CACTGTCTTAGTG
637887 TATGTCCCAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.38
Consensus pattern (13 bp):
CACTGTCTTAGTG
Left flanking sequence: Indices 637361 -- 637860
TCTTGGTCTTCATCTGAGGAGTGGTTTTGTTGCTCTCTTGGATTTCAGGTGGTCCGCAAGGGCGA
CCGGAACCCTTAATTGGGGAGTCATCGGGCACTTTTTCCTTCTTCTTAGGCTGCTTCTTACTTCT
ATTTTATCATCTTTCACTTCTCTTACGTCCGTTAATTTGAGTTTCGGCTGTTAGGCATGGCCCGT
CTGTTGGGTTTTCTTGCTTTGGGGTAACCACTTCCCAATCGTCATCCTCATTGAGATCGGGGTCT
TCCCACATTATATCTCCATCTGGGCTATTGACGGCTACCAACCCCGCTGTATCTCTTCTGAGTTA
TCAGGGATGACCCGAACTTCGGTGTCCAGAGGATCCATCTTTTCGACGAGTATAGAGACTGGTTG
CAGTGCTCCAAACCTTATAGACACCATGTTGGTAGTCGCTTTCTCTTCTTCTCCTAGTGTTAATG
CCCTTGTCCGGAGGCCTTCTTGCACCAGCTCTTTAAAGACAAAAC
Right flanking sequence: Indices 637887 -- 638386
TATGTCCCACGACCTGTGGTACCGGCAGTGGCAGTAGTTGGAATCATCAACTTGATCGATCTCGG
CGGGTCGCTTACACGGAGGTAGAGTCAGCTGACCGTTAGCGATCAACATGTCAAAGATGGCGTCT
ACCTTGCTTTCATCGAAATCTCCGACTTTAGAGAGTCGTTCTTTGAGAGAGATTTTTGCCTGCTT
CTTTTCATCCCTGTTTTCGTTCTTTTGCGCAGGGCGTTGGGCTTTTCCTGTCCAGCGACTTGTAT
CGCCATTGATTCTTTCTTTTAGTTTTAGAAGACTCGCCTCTTCTGATCTACGACCACCCTTCTCT
TTTCATGATCTTTGAGGGCAGCCTCTGTTTCCGTGGCAACGGCTAAGAGCTCTCCCAGTGTTTTA
AGCTTCAAGCCCACCAGCTTCAGGCGTGGCTTAGAGTTAAAATTCATTCGACACATGTCAGTTAG
ACTCTCGTGGAGTGGGGCTCTGGGCATTTTACTGCCAACGCTCTC
Found at i:639243 original size:15 final size:15
Alignment explanation
Indices: 639219--639250 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
639209 TAGATACCAG
639219 CATACATAATAGTAT
1 CATACATAATAGTAT
*
639234 CATACGTAATAGTAT
1 CATACATAATAGTAT
639249 CA
1 CA
639251 CTCATTGGAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.44, C:0.16, G:0.09, T:0.31
Consensus pattern (15 bp):
CATACATAATAGTAT
Left flanking sequence: Indices 638719 -- 639218
TCCATGTAAAGGGGTATGGCGCGACAATCCTTTTGCTGCATTTTACTTTCTTCATTCAACTGAGA
GGGAGTCTGTTGAAGATCCCTCCGCCCTATTAGTAAAGCTACTTGATCATCTTCAGATTGGCGTA
GCTCCTCGTGTCGCGAGGACTGCCCTCGGTCATGTTCTTCTGTGGATTACTGGTTTCGCCAATCT
TATCTGACCTTGGGGATCTCCTTGTTCTGCCTTGTCTTTTGAGCGCAAATAATAGCTCGCATAGC
TTCTTTAATCTTCATCATCTTATCTAGCCTTTCCTCGAGACTTTTGTTGAGTTTGGCTATGGCTT
CTTTAGGGGATATTTCGTCTTCGTTGGTTACAAAGACGTGTTCTGTTCTTGACACTTCTGATGAG
ACGGTACGTGCCAAGTCTTCATCAAGCCCGCCCATGTTCGGCTTTCAGTGAAACATAACTGTAAG
TGTGAGGTTTTGTGCTTTACAACACATACGTTCATTAGATACCAG
Right flanking sequence: Indices 639251 -- 639750
CTCATTGGATACCAATAAGGCATAACACTCGTAACCTTACCTAAACCCTTCTTTGTACTCCGACA
CTGTCTGATCGGCCTAACGTAGGTAGCTCGCCTCCCTCTCCTTTGTTACCTTTCTCGCGAGGTTA
TCGATCTTAAAAGGTAAAAATAATAGAGTGCTTTCGATGAGTCGGTCCTCCTCTTCTCATGAAGT
TCGACATGGGGTTAAGAACTGATCACATTGCTCACGAAGATTTCACTCCTAAAGTGGAACCACAC
ATTAGAAACTAGTATAGTAGGCTGAGAAATGCCAATCAGAGGTTCACCCCGGTCTTAAAACTTCC
TTCCATCTCAGCTCCCAGCTTGCCTCACTAAAAGCTTGAAGCGGGATAGGATATAATAAATCAAT
GTGTCCGAATTCTACGTTCCGTTTTGAAGCGATGATTGGGGTTCTGCACCCTTTCCTTTGTACTC
CTTCCCTTTCTTAGGTTCCTAATGGACCTGGCATGGGAGTTCGCG
Found at i:669896 original size:17 final size:18
Alignment explanation
Indices: 669853--669892 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
669843 AGGCAAGGAA
669853 GCGCTTAAGAGCTTAAGG
1 GCGCTTAAGAGCTTAAGG
669871 GCGCTTAAGA-CTTAA-G
1 GCGCTTAAGAGCTTAAGG
669887 GCGCTT
1 GCGCTT
669893 TAAGGCGCAG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 7 0.32
17 5 0.23
18 10 0.45
ACGTcount: A:0.25, C:0.20, G:0.30, T:0.25
Consensus pattern (18 bp):
GCGCTTAAGAGCTTAAGG
Left flanking sequence: Indices 669353 -- 669852
GGCGTTCCCCGCCGGGGTTAGGAGGTGTGCGTACTACTAGTCGTGCTTACTCTCTTGTCTCCCCT
CTTGCTTCGCCAACAAGAATGAAAACATAAAGACTCCTTAAAGTGACGTAAGGAGAACACTCTTC
CTTCAGGCAGGATGACTAAAGCTGTGACAGGACCCAAGAAGAAGCCGTGAGCCAAGGGACCTTCA
GACTAAAAGCCAGGAACAGTTTAGTTATGGGATTCAAAGCCAGGAAGGATTCGACGGTTGTGGCT
TTATCCTTCCTTTTTAAGAATGATGAATAAAGAAATACATCTTGAGAATTCCCTAGGTGCTATTA
AGCTAGTGAAGAAAAGGGACTCTCTCAAAAGAGGTTCATAACGGCTTTAGTGGTTGGCCTTAGTA
GGATTGTTCATTCCCACTCTCGGGGAGCCCTGGGGTAACGTTCTTATCCTTCTTAAGCGGTGCTT
GAGGCAGTAACGCAAGAAAGCGTTAGCAACTGATAAGGCAAGGAA
Right flanking sequence: Indices 669893 -- 670392
TAAGGCGCAGCGGGTTGATGGCTTGCTTGTAATCTGGTTAGTTAGAGCTTACGGACTTACCGAAC
AGTGACTTTCTCCGTTTCTTATTTATGGAACAGTCACTTTCTGAGTTTGATGATCTTATTCCTCT
ATCTCTGTTTTCGTTGTCTTTAGTATAGTTGAATAGTCAAAGATGAAATTTCCTTCATTTATAGT
TCACATAATCCATATTTATGCATTTATAAATGCACAAGCGTCTGTCCTTGTTCTGGTCTTCGCTT
GTGTTATTACAAATGTATGTTATGTGTTCCGACATGTGAGTAGAAGCGCTGTGCATTCGCTTTCC
ACTTACTTCAACAAAGCGGCAAGGCTTGAAGAGCCATAGCTAGCCGAGGCACTCATAGTAACGTT
CAAGAGCTCAAGTTTACCAGTTGAAGCACTTGATTCCCATTTGATGATGTGATTCATAACCAACC
ACCCGTGTGTGAACCAGCGAAGAAAGGCAAAGGTTCCAGGACGGT
Found at i:721598 original size:25 final size:25
Alignment explanation
Indices: 721560--721609 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
721550 TTCCCTACTT
** *
721560 CTGTACTTGGTTGCCTGTCTCTAAG
1 CTGTACTTCCTTGCCTGTATCTAAG
721585 CTGTACTTCCTTGCCTGTATCTAAG
1 CTGTACTTCCTTGCCTGTATCTAAG
721610 TAGGTACGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.14, C:0.26, G:0.20, T:0.40
Consensus pattern (25 bp):
CTGTACTTCCTTGCCTGTATCTAAG
Left flanking sequence: Indices 721060 -- 721559
ATTGCTCGTTCGCTAAAGTCCTGTCTGCCTGCCCGTTGATTCAGTACGTTCCTATCCCTTGGGAA
GTTTGATCCATCTTCCTCTCCTCTCCCTTTGGTCGAGCAAGTAACCTCCCTTCTCCCCAAAGGTC
GAGTGAGTCCCTACCTTCGATGCCCATTTGTTGATTAATCTGGGGCGGTATTCATCCCCGGCTTT
GGTGCCTTTCCTCGCCCTCTTTCATTTGGTAATACCCTTTGATTGACTGCATTTGCTTATCCTGG
TATATAGGTAGTGAACTTCTGTCCTGTCGTATTGTCCTTATTGAGTTATCCTAGCAAGAATCCCC
ATCGACTAAGAAAGCTATGTATTGATTACTATAAGAAGGAAGCCCCGCTATCTATCTCTGCTTTC
CTGTCTTCCTATCTTTCTGCCTATCTGTCTTTCCTCTTTCTGCTTTGTCTTTCTCGCTGTCGGTA
GAGATTAGTATTTCCTAAGTTGTCTGAGGCTGAGCTTCCCTACTT
Right flanking sequence: Indices 721610 -- 722109
TAGGTACGTCTCGCTTCGCTCCTAATTTCCTTGCCGTCTTTCCATTCTGACTATTGAGAAATATC
CATGAGTCTGTCCCCCGCGAGTAAATAAGCTAACCTTGGCTTCCCTTCGACTGAGGCGGACTTGA
GCCTAGTTATTGACTTCCTGAACCTTAAACAAGTTATCAAAGAAGTGGATTTGCTCACAGCTTCT
CCTTCGTTCCTAGACCAACAGCTTAGCTTACCTTAGCCCAGCCGTACGTCCTACTGCTTACCTTA
GCCCAACCATAGGTCCTACAGCTTCGATGGCAGAATGATTGACCGGGCCGCTTGGCCCACTTGAA
CTAGCAGCCCTACCTGCTGCCGTACCTGTCTGTGAATGAACTTCTGGATATTCACCTACCAACAC
AACCCGGCCACGCCGGACTTTCTTTATCCATTCAATCAAACTAGGGAAGTGGTTAGAGAAGCAGT
AGCTGCTATGCGAGTTAGATCGGTCAAGTTTTGATGTAGATATAG
Found at i:721866 original size:30 final size:30
Alignment explanation
Indices: 721829--721893 Score: 94
Period size: 30 Copynumber: 2.2 Consensus size: 30
721819 CCAACAGCTT
* *
721829 AGCTTACCTTAGCCCAGCCGTACGTCCTAC
1 AGCTTACCTTAGCCCAACCATACGTCCTAC
* *
721859 TGCTTACCTTAGCCCAACCATAGGTCCTAC
1 AGCTTACCTTAGCCCAACCATACGTCCTAC
721889 AGCTT
1 AGCTT
721894 CGATGGCAGA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.22, C:0.37, G:0.15, T:0.26
Consensus pattern (30 bp):
AGCTTACCTTAGCCCAACCATACGTCCTAC
Left flanking sequence: Indices 721329 -- 721828
AGTGAACTTCTGTCCTGTCGTATTGTCCTTATTGAGTTATCCTAGCAAGAATCCCCATCGACTAA
GAAAGCTATGTATTGATTACTATAAGAAGGAAGCCCCGCTATCTATCTCTGCTTTCCTGTCTTCC
TATCTTTCTGCCTATCTGTCTTTCCTCTTTCTGCTTTGTCTTTCTCGCTGTCGGTAGAGATTAGT
ATTTCCTAAGTTGTCTGAGGCTGAGCTTCCCTACTTCTGTACTTGGTTGCCTGTCTCTAAGCTGT
ACTTCCTTGCCTGTATCTAAGTAGGTACGTCTCGCTTCGCTCCTAATTTCCTTGCCGTCTTTCCA
TTCTGACTATTGAGAAATATCCATGAGTCTGTCCCCCGCGAGTAAATAAGCTAACCTTGGCTTCC
CTTCGACTGAGGCGGACTTGAGCCTAGTTATTGACTTCCTGAACCTTAAACAAGTTATCAAAGAA
GTGGATTTGCTCACAGCTTCTCCTTCGTTCCTAGACCAACAGCTT
Right flanking sequence: Indices 721894 -- 722393
CGATGGCAGAATGATTGACCGGGCCGCTTGGCCCACTTGAACTAGCAGCCCTACCTGCTGCCGTA
CCTGTCTGTGAATGAACTTCTGGATATTCACCTACCAACACAACCCGGCCACGCCGGACTTTCTT
TATCCATTCAATCAAACTAGGGAAGTGGTTAGAGAAGCAGTAGCTGCTATGCGAGTTAGATCGGT
CAAGTTTTGATGTAGATATAGTCGCCCTCTTCTCTATGTCATAAAGTCGCTTATAATTAAAGGGA
AGGATTTGCGCTTTCTTTTAAGAAGGTAAGAAGGATAAAGCGGTGCCAGCTTCTCTGTGATTGGG
CTGTAACAATAAATAGAAAGGGAGCTGAGTCACTCGACTGCAAGGGAGAGGGGAGCTAGCCCAGT
GCCAACCCTGATTCTGAAAAGTCTTGGCCAAGCCGATCCAAGAGTGCACAGCACTTAGACCGTAG
TATAGTCAAAAGACTTTGATTTAAAGCAAACCCCATTCAATCGAC
Found at i:793767 original size:31 final size:30
Alignment explanation
Indices: 793732--793802 Score: 72
Period size: 31 Copynumber: 2.3 Consensus size: 30
793722 TAGCTTGATT
*
793732 ATTGATAAGTCAAGGATGTGAGAAC-TACTGA
1 ATTGA-AAGTCAAGGAGGTGA-AACGTACTGA
* * *
793763 ATTGACAAATGAAGGAGGTTAAACGTACTGA
1 ATTGA-AAGTCAAGGAGGTGAAACGTACTGA
793794 ATTGAAAGT
1 ATTGAAAGT
793803 TCAGCAAGGG
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
30 6 0.18
31 27 0.82
ACGTcount: A:0.41, C:0.08, G:0.25, T:0.25
Consensus pattern (30 bp):
ATTGAAAGTCAAGGAGGTGAAACGTACTGA
Left flanking sequence: Indices 793232 -- 793731
CTCTTGCCTAGCCTAGCTCAGTCGAGTTTGACCTCCGCTCTCCTCCTTCTAAAAGGTAAGGAGTC
TTCTCTGTCTTATGTACGTTTACGGAATGAATTCCAGATCTTCGTCAAGCTTCCTTCTTCGAAAA
GTTTTCGCTCTCCTCTCTTTGCCCTAAAACAGTAATGGGCCAAGCTTTCGCAAACCTATCTTTCA
CTTTATTGACTTCTAACTGAGAATTGTTTTCACTTCATATTATGCATATAGTTGAAGGCTTCTTT
CTTTCTGAATCAAATGGGAGTTAGTTGATCGAGAAAGTCTCGCCCAAAGTCAAGTGCTTTAAGCT
GGTCTCCGATGCCTAATATCTTTGAGAACTGCTTTAGCTTTAGTAAGTAAGTTAGAATGGGATGA
AAGTTCTCTTCTTTGTTCACAAAAGGAAGGAAATGGAGTCGAAAAGACTTTATAAAAGCTGGGCT
CTTTTTCTTCATTCTCCTTTGGGCGAGAACTGAGATAGCTTGATT
Right flanking sequence: Indices 793803 -- 794302
TCAGCAAGGGATCATACAAGACAAGGTTGAGAAAGCAGATTTGAAGATGAAACCAAATCACTTGG
TCCATCCGCCTCAGCCGCATACGACCACTCACTCAACCAATATGGTCACCCTGTCCTACATACGG
TGTCCCTTAGCTCCTTCTCCACCAAAAGAGGTCGTCGAACACTGGTTTAACAAGTACTTCCAAGA
CCAGTTCAAGAAGATGTACGCATCAGTTGATGTCGGCACTACTGATAACCGACTCATCCAGCAAG
GAGCTAACCAAATCCGTCTTAGAAAGGGTAAGCAGCTCCCTCCTAGAAAGGAAACAGTTCCGCTG
GAGAAGGATCGGGAAAAGGAAAGCCAACCAGTAGCTCTGCCTCCAAGCGATCATGTTGCACCCGA
AGATCAGACCGGGGCAAGCAGATCCCAGAGTATATTGGAGAAGGTGGATGATAACGTCCTCGCAC
ATATAAAGAAAATCCCTTGTGTGTATGACGCACTACTTTTGTCCT
Found at i:823529 original size:27 final size:29
Alignment explanation
Indices: 823490--823546 Score: 73
Period size: 27 Copynumber: 2.0 Consensus size: 29
823480 GATTAACGAT
*
823490 GGAAGAACGAGTTG-ACTAG-CTAAACAA
1 GGAAGAACCAGTTGAACTAGCCTAAACAA
* *
823517 GGAAGTACCAGTTGAAGTAGCCTAAACAA
1 GGAAGAACCAGTTGAACTAGCCTAAACAA
823546 G
1 G
823547 CTCGTGCTCT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 12 0.48
28 4 0.16
29 9 0.36
ACGTcount: A:0.42, C:0.16, G:0.26, T:0.16
Consensus pattern (29 bp):
GGAAGAACCAGTTGAACTAGCCTAAACAA
Left flanking sequence: Indices 822990 -- 823489
TTCAAGCGCGGTCATGTTTTACTGCGCTGATGTTTGAGTGTTCTGCTTAAACTTTCCTCCTTGAG
TGGCGAGGAGCGCACTGTTGTTTTGTTCGCTGACTGTGCTATTCTTTTTGCTTTCGGGTTCTTTC
CCCAGCCAGCCGCCCCTGTGTGGGAGGGGTCTGGAGACTTCTCATTTGTGGGGAATCAAACTCTC
ACGCTCATTCCGGTTCTACATATCGAATTGGGGAGTTCCGGTGAACTAAGGATTCCGCTGGCATA
GTGGGGAAACGTATTTTTGGGATGTGCACTGAGTTTGATAGGTCCACCCAGATGCATGGTTATTA
AGTGCATCAAACTAAAGGATTCCCACCCTCTTTGCTATTTCCAACAGCATTTGGAGCTTCCTCGC
ACTAGCTAGATCCGTTCCATCCCCTTGGAATTGAAATATGTACTTACTGTGCTTGAACGAATGAC
CTTGGGATTCTGAGATGGATTAGTTAGCTCAGCCGGATTAACGAT
Right flanking sequence: Indices 823547 -- 824046
CTCGTGCTCTGAGCCCTGTGGGAGAAGGGTCAACCCTTTCTAGAACGAAATGAAAGGACGGTAGC
TTGCTCCCGATGAGAAGGCTGAGCCCAAGCCTTTCCTTCGTGAATATCGATATAGATCTAGCTGG
GTCTCCTTATTCTTTTCGGTACTGCTCGCCCGCAAAATCCAAATCATTCTTTTGCTTCTAGATGC
TCGTGAGATGAATGGCTAAGTATCCTTTGTGGATCCGGTGACCTAACCACCTTGTTGTGGTTTGC
GGGTGTATTCCCATCCTAACGGATGCCCAATCAGCTGGGATTTCATTCTCGAAGTAAAGAACAAT
CTCCAGTCTCCCCGTTCTGGCAGCGGCGGTTAGTACTTATTATTTTTGTTTCCATTTTCCGGGGT
TTCGGTCCCAATCAGCAAGCACTAAGAGTTGGTGAGGGGAAGTCCGATAGGTTTCGGTTTGTTCC
ATCTCTCAGCCAGTGACAGGTTCCTCCCGGATAAAGAGAAGCGCT
Found at i:851079 original size:21 final size:22
Alignment explanation
Indices: 851043--851085 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
851033 TCTCTACTCT
*
851043 ACTATACTCTACTATAGTAGTC
1 ACTAGACTCTACTATAGTAGTC
851065 ACTAGACTC-ACTATAGTAGTC
1 ACTAGACTCTACTATAGTAGTC
851086 CGTCCGGCTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.33, C:0.23, G:0.12, T:0.33
Consensus pattern (22 bp):
ACTAGACTCTACTATAGTAGTC
Left flanking sequence: Indices 850543 -- 851042
GACTAAAGACTATGCGCGTCGCGTGCTCGATCTAGCAATCTTGGACAATTGTTTTGATGAACTGT
CACTAAACTCAAAAGAAAGAAGAGAAAGAACTGGGAGTTGGCGCCTACATAACAGGTTGCTTGCT
TACCAAGCCATCCTGGCAAGCTCCTCCAGTTCGATTATTATTCTTGACTTGACTTTTGATTATAA
AAAGTACTCACTATCAAAATGAAAGACGATCGATTATCTACCCAAGAAGATAGAGAGTCCCACAT
ACGAGAAAAGGTCACAAATGGAGTTGAACCAAGTAACATTGCAAAGGCATAATGATAGTAGGGTC
GGATATCCCGCCCTCCGAACCGGACGTGAAGGTCTCCCTCATCCGGCTCTCTGCAGGGAATCTCC
ACTCACTGCTTCCCTAATATCCTCCCTTTACCACATCATGGGGTTTACAGGAGATCCCAGAGGCT
CGCTCGGAAGGCTGCTATACTATACCTTTTACTCCTCTCTACTCT
Right flanking sequence: Indices 851086 -- 851585
CGTCCGGCTGCTCTTGCTGAAATCATTACTCTTCATTCTCCCGTGCTCTAGCAATTGCGCTCCCT
AGACCACTACCATGTAGTTAGGTAGGGACAATCAATCCGTAGTGACGGGAATCTAGGAATGAATG
GGGATCCCTATCAATATAAAAATGAAGAATCTATATATATATAATTCTCCTTTCTCTCAATAGAT
GTATCTGGTCTGATACGGTACAGTACAATACGAGACGATGGAATGCAATGGGATGGATGGTAGAG
GGCTGCCTGCGCCCAAAAGCGATGATTCACTTGTCCCTTGTCCATAGGGACCTCGTGGCATACAA
CCGCAACGACTCCCGCTAGATAGCCGCCCTTTTCTCTTTTTACAGCCTCGTGGACGGACGAAAGA
AGGAAGTTAAAGAACAGGGCAGTTTTGTTTGGCTCGCGAAGTAGACAGCAAGCAGCAAGCAGCTT
CAAAAAGCCGTAGCGCGCGGGGGCTTTGGGGGGCCTACGCGTCGC
Found at i:862989 original size:15 final size:16
Alignment explanation
Indices: 862961--863004 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
862951 TTTCTTTGGA
862961 TTTCTTTATATTTATC
1 TTTCTTTATATTTATC
862977 TTTCTTT-TATTTA--
1 TTTCTTTATATTTATC
*
862990 TTTATTTATATTTAT
1 TTTCTTTATATTTAT
863005 ATCTTCGATG
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 6 0.24
14 6 0.24
15 6 0.24
16 7 0.28
ACGTcount: A:0.20, C:0.07, G:0.00, T:0.73
Consensus pattern (16 bp):
TTTCTTTATATTTATC
Left flanking sequence: Indices 862461 -- 862960
GGGAAACCAAGAGAACGCTTCGCGTTTTCTTATCTTCTTCCCGCCCTAGGAGTAGGAGTAGCACA
AAAGAGGGATTAGCATTATTTACCCCATGATAAACCACTAACACCTTCCTCGTTGGGGCTCCGCG
CACTGGGAAAACGACGCGACGGGAAACCGGCCACTAGTTACGAAGCTCCAATAAGGTATCGAGAG
GGCTATCACAGTCAGGTGCGAAGCAATTGCCCCTATTTTTAAAGTACCCTCTTCGGGGTTGAGGC
GAGAAATGGCTTGATGAACCGTTCCGTTCGCCACGCACCGGCCCCATTCACTTGCTTATCGTAGA
GGCTGTAAGTACACAGTGCCCCACAACTATCAAGCAGATTGATGGGGATTTGAAACACGAGAGTA
CCTACCTCCGAGCCGAGAGTGCCCGCCCTTTCTTTCAAGTAGGCCACTTTTTCCGGAACGCAGTC
CGGGATAACCGTGACCGTGTATATTTATCTTTATATTTCTTTGGA
Right flanking sequence: Indices 863005 -- 863504
ATCTTCGATGCTGTCATTTCGAAATGTCCGCAACTCCGATTTTCCCCGTTTCACCTCCCAAAAGC
ACAAAGCTTGACGAGCGCAGATGAGGAAGCGGGAGCAATAACACCAATAATCTCTTTCTTGTCCT
TCTTTCTACTTAAGGGGCAAAGAAGCGCTTTCGCTACTGAGAAAGCGAACGGTCAGCGCGAAGGT
TCAAGACTTAGCCGAGCGTTAGCGAAGCGGAACGAAGCGTCGGTGCGGAGCGGACTTTATGCTGA
GCCTCGGTAGCGAAGCACTTAAGATGAAGCGTCGGTGCAGAGCACTTTCAGAACGAAGCGTCGGT
AGCAAAGCTGACAACGCAACGCGTTAGCGAAGCGTTATTCTCATAGCGAGGCGCTTCGAGTTAGC
GAAGCGCTGTAGTCGCGCCGAAGCCCTATGTGCTATAATGCTGAGCCAAGGACGCTCCGCCTTAT
CTATAGAAGCAGTCAACCGAGTTCTGAACGAATTAGCTCCTTGGT
Found at i:897096 original size:13 final size:13
Alignment explanation
Indices: 897078--897104 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
897068 TCCTATCTCC
897078 TATAGGCATTCAT
1 TATAGGCATTCAT
897091 TATAGGCATTCAT
1 TATAGGCATTCAT
897104 T
1 T
897105 GGGTCATCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TATAGGCATTCAT
Left flanking sequence: Indices 896578 -- 897077
GCCGGGCCGTGGATTTGATAAATAAAGCACGCTAGCGAGGAAATGAAGCAAGCGATCGATCAAGC
ACTAAAACAAGCCAAGCAGATTTGGTCAGAAAGCAAAAGAGCTAAAACCGGAGGGTGCAAGTCGA
GCGTGAAAGACCCTTTCTGGTACTATCCTAGGCGGGGCAGGACATCTGAGTCAACAACTTCTTTA
TTCATATAATAGGTTTCTAACAGAATGGGTGGCTATTTATCCGAAAGTGAGGACACCGTCCCTCT
TCTCTGGATCTGGCATTCCTGTCCCAGTATGAAAAGACAATTTCATTGCCTCTGCTTTCCTTTCG
TTTTGTCCCCAGATTCTTCCCCAGGGGTGACTTTGTTCAGGCACTAAGCGTGATACCTTTATTGG
TCTTGTAGTTCCATAAGTAGGGTGCCTTTGACTATCCCGTATTGAAAGAGCGGCGATAGGAGGAG
GGATAACGTCCTCAGCTAAGGTCCGCATTGTTCTATCCTATCTCC
Right flanking sequence: Indices 897105 -- 897604
GGGTCATCTCCTCCAGGTAAGAATCAGGATTTCAAGTCTGAGTTCTACCCCAAGATAGGGAATGG
TTTCCCCAATATAGGATTCGGCGAGTGTTCAATAGGCTCGCTAGTCGAGATCCTCAAATAGGGGC
ATATCCGGAGGGACTCCATCAGTATATCTATTCTATTGCCATTTCCGTCTAGAAAAGAAAGAGTG
TGAGGCATCTCATGCAAAATCAATCAGTCAGTGACTCAAATCGAGTAGATATAGGCTAGTCAAAT
AGGTCTAGGAAGAACGATGACTTCCTTCGATACAGGATTCCGAAAGGACGGATCCTATTACTTTG
GAATGGAGCGAAGGCGCACCCTTTAGTCAACTCGAAGAAGAGGAAACGGAAGCAACCTTTCCGAA
AGATTACCAGGCGAGGGGTTAGGACTGCCTTAGACCAGTCCTGACTTTACCTGATTGTGTAAGAG
ACTAGGTCCGTCTGGCATGGCGGGCAGGAAGACAACTCACTTTGA
Found at i:909594 original size:21 final size:19
Alignment explanation
Indices: 909549--909625 Score: 118
Period size: 19 Copynumber: 3.9 Consensus size: 19
909539 TTTAGATAGT
*
909549 ATAAGGCTATTCCTTTGAC
1 ATAAGGCTATTCCATTGAC
909568 ATAAGGCTATTCCATTGAC
1 ATAAGGCTATTCCATTGAC
*
909587 GTATAAGGCTATTCCTTTGAC
1 --ATAAGGCTATTCCATTGAC
909608 ATAAGGCTATTCCATTGA
1 ATAAGGCTATTCCATTGA
909626 AGCTGGGTGC
Statistics
Matches: 53, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
19 35 0.66
21 18 0.34
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35
Consensus pattern (19 bp):
ATAAGGCTATTCCATTGAC
Left flanking sequence: Indices 909049 -- 909548
AATACCAGCTTCGGTTGGCATTATATGTGCATGATCATGCATGAGGTGTCCCCATGCATGTGTGT
GGAAGGACACCTCATGCATGAGGTGGTCTGTTTATAGCTTAAGGTGTTCATGCTATGGACACCTC
ATACTAGGAGGTGTCCATGCATTCCTTTATGTGTCCTTTATGTATTAAAGTGAAACATGAGGTGT
GCCTAGGTGTTGTTTTGCATGAGATAATTGTCTTTGTACATGCTTCACCTGTAATTACAGGTGTA
AGCATGTAACCTCTCATCTCACCCTATATATATGGGTAATTGATATGAAATGTGTGTGAAATTTA
CATTGAGACATTCTCTCCTTCTCCAGAGACATAATTATCAAGAGATTAATCTCTTTTAATCTTGA
TTAAAGAGGAACTCACTTTAAAGGTTGATCACTCTACAGAATCTTTCTGCTACGAGCCAGCTGAA
AACGTAAGCGCCCCCGTCAGGGAAGGGCCCTAGTCTTTAGATAGT
Right flanking sequence: Indices 909626 -- 910125
AGCTGGGTGCCTATCCATATTTAGTTGGAAGGGCCCTAGTCTTTTGTATTTTAGCGCACCTGAGT
GCATAAGCCCAACAGCTACAGGGGCGAGCCTTAAGCTGAAGGGGCGAGCAACCATTGATGTCATA
AATGGTCACAAGAGCACCTATCCACATTCAGAACCTATGAAAAGCTGGCTGATCGTAATCATTGA
GCTAACATACTTTCGGACTGACCATATAACCCATACCTGTTATTAACACTTGGATCAGTAGATCA
TACATTCAGCTCCAGGACCGTCGGGACAATAGGTGTAAACCAGCTGATTGTCTAGGTAACAGGCA
CCACTAAGTATTTACATAGCGTACATCTATATAGATGCCTCCTCTTACCACACCTATCTCTTCAT
GGAATTGCAGTCGTAGCATACTAGTGAAAACTGTTCATGGATCGTGAAACACATCAGTGCTAGTC
GTCACTCATAAATCAATGTAGCTCAAAAGATGAAACTATATCAGC
Found at i:909602 original size:40 final size:40
Alignment explanation
Indices: 909547--909625 Score: 158
Period size: 40 Copynumber: 2.0 Consensus size: 40
909537 TCTTTAGATA
909547 GTATAAGGCTATTCCTTTGACATAAGGCTATTCCATTGAC
1 GTATAAGGCTATTCCTTTGACATAAGGCTATTCCATTGAC
909587 GTATAAGGCTATTCCTTTGACATAAGGCTATTCCATTGA
1 GTATAAGGCTATTCCTTTGACATAAGGCTATTCCATTGA
909626 AGCTGGGTGC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (40 bp):
GTATAAGGCTATTCCTTTGACATAAGGCTATTCCATTGAC
Left flanking sequence: Indices 909047 -- 909546
GCAATACCAGCTTCGGTTGGCATTATATGTGCATGATCATGCATGAGGTGTCCCCATGCATGTGT
GTGGAAGGACACCTCATGCATGAGGTGGTCTGTTTATAGCTTAAGGTGTTCATGCTATGGACACC
TCATACTAGGAGGTGTCCATGCATTCCTTTATGTGTCCTTTATGTATTAAAGTGAAACATGAGGT
GTGCCTAGGTGTTGTTTTGCATGAGATAATTGTCTTTGTACATGCTTCACCTGTAATTACAGGTG
TAAGCATGTAACCTCTCATCTCACCCTATATATATGGGTAATTGATATGAAATGTGTGTGAAATT
TACATTGAGACATTCTCTCCTTCTCCAGAGACATAATTATCAAGAGATTAATCTCTTTTAATCTT
GATTAAAGAGGAACTCACTTTAAAGGTTGATCACTCTACAGAATCTTTCTGCTACGAGCCAGCTG
AAAACGTAAGCGCCCCCGTCAGGGAAGGGCCCTAGTCTTTAGATA
Right flanking sequence: Indices 909626 -- 910125
AGCTGGGTGCCTATCCATATTTAGTTGGAAGGGCCCTAGTCTTTTGTATTTTAGCGCACCTGAGT
GCATAAGCCCAACAGCTACAGGGGCGAGCCTTAAGCTGAAGGGGCGAGCAACCATTGATGTCATA
AATGGTCACAAGAGCACCTATCCACATTCAGAACCTATGAAAAGCTGGCTGATCGTAATCATTGA
GCTAACATACTTTCGGACTGACCATATAACCCATACCTGTTATTAACACTTGGATCAGTAGATCA
TACATTCAGCTCCAGGACCGTCGGGACAATAGGTGTAAACCAGCTGATTGTCTAGGTAACAGGCA
CCACTAAGTATTTACATAGCGTACATCTATATAGATGCCTCCTCTTACCACACCTATCTCTTCAT
GGAATTGCAGTCGTAGCATACTAGTGAAAACTGTTCATGGATCGTGAAACACATCAGTGCTAGTC
GTCACTCATAAATCAATGTAGCTCAAAAGATGAAACTATATCAGC
Found at i:951587 original size:6 final size:6
Alignment explanation
Indices: 951568--951620 Score: 61
Period size: 6 Copynumber: 8.8 Consensus size: 6
951558 AGAAGAGTCG
** * * *
951568 GGCTCC GGAGCC GGCTCC GGCTCA GGCTCC GGCTCA GGCTCA GGCTCC
1 GGCTCC GGCTCC GGCTCC GGCTCC GGCTCC GGCTCC GGCTCC GGCTCC
951616 GGCTC
1 GGCTC
951621 AGGCGAAGGG
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
6 39 1.00
ACGTcount: A:0.08, C:0.42, G:0.36, T:0.15
Consensus pattern (6 bp):
GGCTCC
Left flanking sequence: Indices 951068 -- 951567
AAACCTGTTTCAATTTTTTTTAGGGCAGTCGCTCTGCCTTGGAGCAGATGAAGCGAATCAAACTA
CAGGGCGCGCGTAAGCAAGCATGCAGCAAGCTGAAAACTACTGCGCGCTAGCTGCCTTCCATTGA
AGCCGGGCGAGACAAGCTACCTTTAGCTAGGAGCCTCTTTTCCTTCTGCCCAGCTCCCCGAAAAC
AACGTTCGACTTGCATGTGTTAAGCATATAGCTAGCGTTCGTTCTGAGCCAGGATCAAACTCTGA
TTTTGAGCAGGGCAGGAGACGAAGGCCCTTTAGCGAAAGCGCTTGTGAAATGCTCGGCGCAGGGC
TTCCACGCGCTCACGGGTTGCTTCGCATTCCCTCTCCAGCTCAGCGAATGTTCGCCTCTTCAATC
TCTCCAAGAGCGTCGTCCTGCCGTTGGACTTCTGGGGCGCCCAACCGCCTTACACGCTCTTCCGC
AACTCCTGCAGCCGCCGCTCTAGCTGCAGCTTTAAAGAAGAGTCG
Right flanking sequence: Indices 951621 -- 952120
AGGCGAAGGGCTCGGGATCCTGTTGAGATCCAGAAGCCGTCGGTTCGAAGGGCCGGCATCGCCAC
CTCTGCCTCCAACGGGAATCGGTAATCCTTCCATGGACGACAGGACCAAATCGAGCCACTCCTCA
AATAAAACCACTATAGGGGCCAACCAAGTCAAGCCCCAGTCCCAGAGCACAGGAGCAATCCACAG
TAAAAAAAGTAAACGATCCTTTTCTTAAGAATGACCCGGCCCACTTCCATACCCATTGACGGGGA
ATCATAACAACGAATAGGAATGAAACGGCTATAGCTCCTATATGAACTACTGGGAAGATCATAGC
GGAGAAGTCGAGACCTAACAAAAGAAGTAAACCTGAAGTGTCGCGAAAGACTAGGATGGAAAACA
AAACGGAATGTACCGGATTTTAGCACGTACAACCATCAAACCAGAGACAAAAGCAAGGCTCGCCA
AAAATGACCATAACAAACAGCCTGCATACACCTTTTCGTTCGCCA
Found at i:951599 original size:18 final size:18
Alignment explanation
Indices: 951578--951624 Score: 85
Period size: 18 Copynumber: 2.6 Consensus size: 18
951568 GGCTCCGGAG
*
951578 CCGGCTCCGGCTCAGGCT
1 CCGGCTCAGGCTCAGGCT
951596 CCGGCTCAGGCTCAGGCT
1 CCGGCTCAGGCTCAGGCT
951614 CCGGCTCAGGC
1 CCGGCTCAGGC
951625 GAAGGGCTCG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.09, C:0.43, G:0.34, T:0.15
Consensus pattern (18 bp):
CCGGCTCAGGCTCAGGCT
Left flanking sequence: Indices 951078 -- 951577
CAATTTTTTTTAGGGCAGTCGCTCTGCCTTGGAGCAGATGAAGCGAATCAAACTACAGGGCGCGC
GTAAGCAAGCATGCAGCAAGCTGAAAACTACTGCGCGCTAGCTGCCTTCCATTGAAGCCGGGCGA
GACAAGCTACCTTTAGCTAGGAGCCTCTTTTCCTTCTGCCCAGCTCCCCGAAAACAACGTTCGAC
TTGCATGTGTTAAGCATATAGCTAGCGTTCGTTCTGAGCCAGGATCAAACTCTGATTTTGAGCAG
GGCAGGAGACGAAGGCCCTTTAGCGAAAGCGCTTGTGAAATGCTCGGCGCAGGGCTTCCACGCGC
TCACGGGTTGCTTCGCATTCCCTCTCCAGCTCAGCGAATGTTCGCCTCTTCAATCTCTCCAAGAG
CGTCGTCCTGCCGTTGGACTTCTGGGGCGCCCAACCGCCTTACACGCTCTTCCGCAACTCCTGCA
GCCGCCGCTCTAGCTGCAGCTTTAAAGAAGAGTCGGGCTCCGGAG
Right flanking sequence: Indices 951625 -- 952124
GAAGGGCTCGGGATCCTGTTGAGATCCAGAAGCCGTCGGTTCGAAGGGCCGGCATCGCCACCTCT
GCCTCCAACGGGAATCGGTAATCCTTCCATGGACGACAGGACCAAATCGAGCCACTCCTCAAATA
AAACCACTATAGGGGCCAACCAAGTCAAGCCCCAGTCCCAGAGCACAGGAGCAATCCACAGTAAA
AAAAGTAAACGATCCTTTTCTTAAGAATGACCCGGCCCACTTCCATACCCATTGACGGGGAATCA
TAACAACGAATAGGAATGAAACGGCTATAGCTCCTATATGAACTACTGGGAAGATCATAGCGGAG
AAGTCGAGACCTAACAAAAGAAGTAAACCTGAAGTGTCGCGAAAGACTAGGATGGAAAACAAAAC
GGAATGTACCGGATTTTAGCACGTACAACCATCAAACCAGAGACAAAAGCAAGGCTCGCCAAAAA
TGACCATAACAAACAGCCTGCATACACCTTTTCGTTCGCCACACG
Done.