123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_058888
Parameters: 2 7 7 80 10 50 500
Length:  682814

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9932--9974	18	2.4	18	81	18	54	34	25	20	18	1.96
28877--28922	23	2.0	23	91	0	74	17	28	10	43	1.82
41098--41126	15	1.9	15	100	0	58	55	10	20	13	1.68
43700--43744	21	2.1	21	95	0	81	13	24	8	53	1.68
63382--63425	15	2.9	15	77	12	54	25	18	29	27	1.98
79775--79899	61	2.1	58	85	10	164	12	32	23	32	1.91
91166--91195	15	2.0	15	93	0	51	40	26	16	16	1.90
93896--93992	28	3.4	28	92	1	149	28	21	45	4	1.70
107357--107382	12	2.2	12	100	0	52	46	23	0	30	1.53
113247--113282	16	2.2	16	95	0	63	27	13	30	27	1.94
119616--119686	33	2.2	33	100	0	142	23	28	32	15	1.95
142882--142969	33	2.7	33	100	0	176	22	31	28	17	1.96
142971--143005	16	2.2	16	94	0	61	28	14	28	28	1.95
143327--143369	22	2.0	22	100	0	86	13	34	18	32	1.90
153813--153848	16	2.2	16	95	0	63	27	13	30	27	1.94
154994--155026	15	2.1	16	88	5	50	3	9	30	57	1.45
168740--168787	21	2.3	21	78	7	53	35	14	35	14	1.87
169873--169913	18	2.3	18	95	0	73	43	24	9	21	1.83
169948--169972	10	2.5	10	100	0	50	44	20	8	28	1.79
169973--170015	16	2.7	16	96	0	77	18	53	0	27	1.45
182202--182248	16	2.9	16	90	0	76	19	31	23	25	1.98
182985--183009	13	1.9	13	100	0	50	28	32	16	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
190062--190103	19	2.2	20	86	4	59	4	30	26	38	1.77
201668--201697	16	1.9	16	93	6	53	20	33	13	33	1.91
233894--233929	16	2.2	16	95	0	63	27	13	30	27	1.94
244677--244704	14	2.0	14	100	0	56	35	7	28	28	1.84
256055--256252	99	2.0	99	95	2	353	23	22	33	20	1.97
285915--285966	27	1.9	27	92	0	86	25	19	5	50	1.69
288573--288613	20	1.9	23	85	14	61	39	4	24	31	1.76
288757--288799	22	2.0	22	85	0	59	30	18	27	23	1.98
318124--318161	14	2.7	14	87	0	58	23	21	23	31	1.98
322441--322475	16	2.2	16	94	0	61	28	28	14	28	1.95
337129--337153	12	2.1	12	100	0	50	32	28	32	8	1.86
343360--343397	14	2.7	14	88	8	51	23	18	21	36	1.95
348399--348439	16	2.6	16	82	17	59	58	12	21	7	1.58
348406--348441	16	2.2	16	95	0	63	61	11	22	5	1.50
360022--360065	23	1.9	23	85	0	61	20	29	38	11	1.87
361365--361447	33	2.5	33	98	0	157	22	28	30	18	1.97
400011--400055	18	2.5	18	81	0	54	20	40	8	31	1.83
414954--414988	16	2.2	16	94	0	61	28	14	28	28	1.95
414984--415056	33	2.2	33	100	0	146	24	27	31	16	1.96
422474--422556	33	2.5	33	100	0	166	18	28	30	22	1.97
445431--445462	16	2.0	16	93	0	55	3	25	34	37	1.72
448208--448262	21	2.6	22	74	8	60	34	27	16	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
448302--448347	24	1.9	24	95	0	83	26	13	30	30	1.93
485822--485860	20	2.0	20	90	5	62	43	17	28	10	1.82
499627--499669	18	2.4	18	81	18	54	34	25	20	18	1.96
518572--518617	23	2.0	23	91	0	74	17	28	10	43	1.82
546714--546825	33	3.4	33	97	0	206	23	28	31	16	1.96
575650--575693	22	2.0	22	90	0	70	27	29	25	18	1.98
578507--578555	24	2.0	24	84	0	62	28	40	14	16	1.87
587762--587840	30	2.6	30	97	2	149	34	27	22	15	1.94
607995--608024	14	2.1	15	93	6	53	53	6	20	20	1.67
609906--609935	10	3.0	10	100	0	60	40	10	0	50	1.36
617234--617279	25	1.9	23	100	0	74	19	39	17	23	1.92
624370--624421	27	1.9	27	88	0	77	26	26	30	15	1.96
628787--628825	20	2.0	20	89	0	60	25	15	23	35	1.94
634475--634553	30	2.6	30	97	2	149	34	27	22	15	1.94
637064--637098	16	2.2	16	94	0	61	28	28	14	28	1.95
661335--661365	16	1.9	16	93	0	53	48	12	3	35	1.58
671081--671163	33	2.5	33	100	0	166	22	30	28	18	1.97
678581--678653	33	2.2	33	100	0	146	16	31	27	24	1.96
678649--678683	16	2.2	16	94	0	61	28	28	14	28	1.95

Tables:   1

The End!