Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_069587
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 633356
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Found at i:8625 original size:21 final size:20
Alignment explanation
Indices: 8592--8631 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
8582 ATCTTTGTTT
8592 CTCCATTTGCTCTATCCTTCG
1 CTCCATTTGCTCT-TCCTTCG
8613 CTCCAATTT-CTCTTCCTTC
1 CTCC-ATTTGCTCTTCCTTC
8632 CAGTTTCTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 6 0.33
21 8 0.44
22 4 0.22
ACGTcount: A:0.10, C:0.40, G:0.05, T:0.45
Consensus pattern (20 bp):
CTCCATTTGCTCTTCCTTCG
Left flanking sequence: Indices 8092 -- 8591
AAGCTGACACCTACTTTCCTACTACTCTTTTCTATGTTACTGCATTTTCTCACTCATATCTAAAG
GAGTTCCCCGCTGCGCGCCCCTCTACTCTTGCTTTATTCAATTTGTCTAAATAATAAGACAAGGC
CTCTCCTACATTCTGGGAGACATTGGACAACTGCCTGGTGTCCTTGAATTGGATAGTGTGAAAGT
AGTATTGTTTCAAAAACCTATCCCCCTCAATTCATCCCCAGAGTTGATGGACCTTGGTGGCATGC
TACTTCAACATAACCTTGCTTTCCCCAAAAGAACTTTTTTCCAAACCATTTTCACTAACATTTCA
AATGGAAATACACGTACCCATTCATCAAATCTAAAGGATCTTCATTGACATTACCAGAAAATGGA
TCAAGTTTGAAAGGTACAAAACCCGGTGGGAGAGATGCTGTCTCTAGAGACTGGATTAGAGGGGA
TGCTTTGGCAGATCCAATGGTCAAATCTACCACAGATCTTTGTTT
Right flanking sequence: Indices 8632 -- 9131
CAGTTTCTTGATTTCAGCGTGATTCCCATCTTTCTGGCGTTTGTGCTTGAAGTTGACATCGTCAT
CCGACATGTCGTCATCTGTCTCATCTTCATCATCACTTTCAACATCTGTTTCTGATTCAGTTTCA
TAAAAGACTTCTTCTTCTTTATCTGGGCTTACACCCTTCCCAGATTGTTTATTAGTAACTTCTTC
CCCTGAAGCGCCTGGTTTCTTATCTACTTGATTTTTCGGGATCTAAGAAACAAACCTTTTTCTTG
ACTTTTTCAGAGCGTTTCAAAGGCTCTTTTCTTCCTCTAGCTTTCTACTTTCTCCAATCTTTTCT
TTTCTTTCCTGGAAAGTTGTTGAGGAGAGTTCAAGCTAATAAGACGTCTTGACTTTTGCTCTGAT
CGATGTCATCCTTGTCTAACGCTTGGCACCGGGGTACCTAAAGACTTTCTTCTTCAATTCTGTTA
GCACGCATTCAGTCTTCTTTCTCTAAGTTACGGAATAAGTGTCAG
Found at i:15422 original size:32 final size:32
Alignment explanation
Indices: 15386--15467 Score: 164
Period size: 32 Copynumber: 2.6 Consensus size: 32
15376 AAGTATGAGC
15386 CGAAGAGCGTTCCCTCGATAGACTCGATGATA
1 CGAAGAGCGTTCCCTCGATAGACTCGATGATA
15418 CGAAGAGCGTTCCCTCGATAGACTCGATGATA
1 CGAAGAGCGTTCCCTCGATAGACTCGATGATA
15450 CGAAGAGCGTTCCCTCGA
1 CGAAGAGCGTTCCCTCGA
15468 CTTCTATCGA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 50 1.00
ACGTcount: A:0.27, C:0.27, G:0.26, T:0.21
Consensus pattern (32 bp):
CGAAGAGCGTTCCCTCGATAGACTCGATGATA
Left flanking sequence: Indices 14886 -- 15385
TCAATGATTTAGCGGGGCGAACTAGGAGGAATGAAAGTCTCCTTCTGCAAAAGAAGACCCTGGCA
CACTGAATTCACCGGGCATATCAAAACTTCCTGTCGAGTTGGTTAGTCAAATCTCCTTCCCAGGG
AGGCGTGCAAGTGGGAATGTTGGGTTCAGTCTAACTCTCACGGAGGAAGGAAGTGGCTATCTATG
GTTATGATAGCTTTCTTCACCAATTTGATGATTAAGTCAGTGAACCCGAGTGCGGTATCGGTCAT
ACAGTAGACCTCTGAGTATAACGTCTCGACCCAAGAAAGGTCCAATCTGCCAGGTAGGCTTATAG
GCTACACGCATACCAGAATGGCTGAAAAGCTCCGTAGCGAACGGACCAAGTCACCGAATTTCCTA
GCCCGCTAGCAAGCAAGAAAGGTAGGCTCCTTTCAGATACCTGACCTCGGCGTTGAAACACCTAT
TCGTACGACTAGAGGAGTAGACGACTCTCTATAGAAAGTATGAGC
Right flanking sequence: Indices 15468 -- 15967
CTTCTATCGATCTTCCATGACAGACCAAGATCACTCTTAACCAGAGATTCAGGCAGCATCACAGC
GACAGAAAGAAAAAAAAGAATGAAATTGAAAAAATAGCTGAAACCTTCGCCCTAACAATGCAGAC
TCCCTGAGAGAATCAATGAAATGAGAGGTTCGGCTCCGTATTAATGGAAGCTTTGAAGTCAATGA
TCAGTCAACTGTGTTTGAAATGTAATACATATAAGGAAAGACAGGGACTGACCGGATTCCTCTTC
TCCTGACTAAAAAACTAGGGCGGGTAATCGACCGAAAGAGAGAAACTGAAAGTACGTATGATAAT
GAAATTCCATCTTCCAAAAAAGAATGAAGTCAAGTGCGATGCAAGAAAGAAGTACCAAAAGCAGG
TGACTCCTGGCGTCGAAAGCTAGTAAACAGCGTCAATACTAGCGAGAGTTCCTTTATCGACTTTT
GAGGCTTGCTTCTTATCTTTCTGTTGATACACTAGCCCGGCGCAC
Found at i:16179 original size:18 final size:18
Alignment explanation
Indices: 16156--16195 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
16146 GCTTCTGTTG
16156 TTGTAGTGAGCTCTCCTC
1 TTGTAGTGAGCTCTCCTC
*
16174 TTGTAGTGAGCTCTTCTC
1 TTGTAGTGAGCTCTCCTC
16192 TTGT
1 TTGT
16196 TGTAGGGAGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.10, C:0.23, G:0.23, T:0.45
Consensus pattern (18 bp):
TTGTAGTGAGCTCTCCTC
Left flanking sequence: Indices 15656 -- 16155
TCAATGATCAGTCAACTGTGTTTGAAATGTAATACATATAAGGAAAGACAGGGACTGACCGGATT
CCTCTTCTCCTGACTAAAAAACTAGGGCGGGTAATCGACCGAAAGAGAGAAACTGAAAGTACGTA
TGATAATGAAATTCCATCTTCCAAAAAAGAATGAAGTCAAGTGCGATGCAAGAAAGAAGTACCAA
AAGCAGGTGACTCCTGGCGTCGAAAGCTAGTAAACAGCGTCAATACTAGCGAGAGTTCCTTTATC
GACTTTTGAGGCTTGCTTCTTATCTTTCTGTTGATACACTAGCCCGGCGCACCGCCTAGTGAAAC
ACGCGTTCTACCGACGAGAGAGAGATCTCGCTGATCTTTCCTTACTGCTTTTGATTTCGATAGAG
AACTAAAGGTAGGAATCAAATAATGGCATGACTGAAATAATAGGCAAGCTTGGAAGCTTGGTCTC
CCCTTCCATATACAAGCTTTCTTTCTACTAGCAGTGCTTCTGTTG
Right flanking sequence: Indices 16196 -- 16695
TGTAGGGAGCAGTTGTTGTAGGTAGCTGTTCTGTTGTTGATAGGTAGGATCTCTGTCCGGTACCA
GCCTAGCCTCTGTCTTGTGTACCAGTGCTGTCCCCGTCCCTTGTGCTAGGGGCGCGCAGCGGGGT
TCCAGTACCGGGAAAGGATCTCTGTTGTTTGGTTTGTTAACAGCTGGTCCGCCAGTACAAGTGTC
ACTGATATTGCCTATGTGAGTCAGTCTTTTTCTGTCTGTCACTGTCGTTCCACTTGAGAAGAATA
AGTCAAGAAAAGCAACTCCCTGCTGGTCGTTGAGTTCACTAGCTACAAAGAGCTCGTGAAAAAGA
TCATTCAAAGTCCCTGTGTCACTGTCGTTCCACTTGCCTTGTCTGTATTACCAAAGCAACTCCCA
TCGGGTCGTTGTGGCTATAGCTCCAATAAGAGGTGGTAAGTACACTGCCTCATCTATTATCCGGA
GAGAATTCTGTAGTCTAAGTGGTCATGGAACTTTTATTATTAGCT
Found at i:16198 original size:21 final size:21
Alignment explanation
Indices: 16147--16205 Score: 70
Period size: 18 Copynumber: 3.0 Consensus size: 21
16137 ACTAGCAGTG
*
16147 CTTCTGTTGTTGTAGTGAGCT
1 CTTCTCTTGTTGTAGTGAGCT
*
16168 C-TC-C-TCTTGTAGTGAGCT
1 CTTCTCTTGTTGTAGTGAGCT
*
16186 CTTCTCTTGTTGTAGGGAGC
1 CTTCTCTTGTTGTAGTGAGC
16206 AGTTGTTGTA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
18 14 0.45
19 2 0.06
20 3 0.10
21 12 0.39
ACGTcount: A:0.10, C:0.20, G:0.27, T:0.42
Consensus pattern (21 bp):
CTTCTCTTGTTGTAGTGAGCT
Left flanking sequence: Indices 15647 -- 16146
GCTTTGAAGTCAATGATCAGTCAACTGTGTTTGAAATGTAATACATATAAGGAAAGACAGGGACT
GACCGGATTCCTCTTCTCCTGACTAAAAAACTAGGGCGGGTAATCGACCGAAAGAGAGAAACTGA
AAGTACGTATGATAATGAAATTCCATCTTCCAAAAAAGAATGAAGTCAAGTGCGATGCAAGAAAG
AAGTACCAAAAGCAGGTGACTCCTGGCGTCGAAAGCTAGTAAACAGCGTCAATACTAGCGAGAGT
TCCTTTATCGACTTTTGAGGCTTGCTTCTTATCTTTCTGTTGATACACTAGCCCGGCGCACCGCC
TAGTGAAACACGCGTTCTACCGACGAGAGAGAGATCTCGCTGATCTTTCCTTACTGCTTTTGATT
TCGATAGAGAACTAAAGGTAGGAATCAAATAATGGCATGACTGAAATAATAGGCAAGCTTGGAAG
CTTGGTCTCCCCTTCCATATACAAGCTTTCTTTCTACTAGCAGTG
Right flanking sequence: Indices 16206 -- 16705
AGTTGTTGTAGGTAGCTGTTCTGTTGTTGATAGGTAGGATCTCTGTCCGGTACCAGCCTAGCCTC
TGTCTTGTGTACCAGTGCTGTCCCCGTCCCTTGTGCTAGGGGCGCGCAGCGGGGTTCCAGTACCG
GGAAAGGATCTCTGTTGTTTGGTTTGTTAACAGCTGGTCCGCCAGTACAAGTGTCACTGATATTG
CCTATGTGAGTCAGTCTTTTTCTGTCTGTCACTGTCGTTCCACTTGAGAAGAATAAGTCAAGAAA
AGCAACTCCCTGCTGGTCGTTGAGTTCACTAGCTACAAAGAGCTCGTGAAAAAGATCATTCAAAG
TCCCTGTGTCACTGTCGTTCCACTTGCCTTGTCTGTATTACCAAAGCAACTCCCATCGGGTCGTT
GTGGCTATAGCTCCAATAAGAGGTGGTAAGTACACTGCCTCATCTATTATCCGGAGAGAATTCTG
TAGTCTAAGTGGTCATGGAACTTTTATTATTAGCTGGGAAGAGGC
Found at i:17789 original size:13 final size:13
Alignment explanation
Indices: 17771--17797 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
17761 CTGCCCTGGG
17771 CTTCGCTATCAGA
1 CTTCGCTATCAGA
17784 CTTCGCTATCAGA
1 CTTCGCTATCAGA
17797 C
1 C
17798 ATAGGAGTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.33, G:0.15, T:0.30
Consensus pattern (13 bp):
CTTCGCTATCAGA
Left flanking sequence: Indices 17271 -- 17770
CTGAACAGTCACTAATCTGATAGGAGGAAGAGAGCAAGGATGAAAGGATTTATTCCACCTCGGAT
AATTGGTTTTCAAAAGTGAGCCCAGTCTAATGATGAAAGATATTCATTGTCCGGAACTTGCTTTG
ATGATGAAGGAGGCTCAACCGGAACAACATCCTACGAAATTCTTATTAGCTTAGCCCTACTTCTT
AACTGGGAAAAGCCGGATTACCTAGCTTGACGAGATAGGGAAGCGATCGTCCATCAATTGTTGAG
TCAAATCTCGGGTTCAACTCATTGGTTTGGAATCCCATTCAAGAAAGTAGTGGCTTCCCCCCAAA
TAGAATTCTGATCAAGCCAGTTAGTTCTTCGTTAGGAGAAGAGGCTCTGATGAGAAAATCTCAGT
GTTGAACTACTCTAGAGAGCTAACAAGCGGAAGCAGGCGTGCCATGCTATCAGTCAGAGGAGATT
GATGTTGGCTCCATCTTTGATTTGACTGTCCACTCCTGCCCTGGG
Right flanking sequence: Indices 17798 -- 18297
ATAGGAGTAGAAAAGATGACTTTCTTCATAGGGCGAGGGGCGCGCAGCGGGGGTCAAGCGAAGTT
CCCATCGAAGTTCAATACGAATCTTTGGGTACTTATTATGAGATTGATGAGTACTATCTAATAAT
GGGAAGTATCAAAAAAGAAATCCGTTGTATATACATTCGAACCACTCTTGGTCATATTTCTTTTT
ATCAAGAAACAGAAAAAGCGATACAAGGGTTTAGTCGGACTCCGTATATTGGTACACTAGGCAAA
CTCTGAAATTAGATTAGTGGATGTCCCTTCTCGTGCGATGCGAGAAGGGGTCTGTCCCGTTTTAT
TAGTATCATAATTGAAGGATTTTGGTGTAAATGAAGATTGAAAGAAGTTCCGTTTTCTAATCACT
GACTCAAGTCCATTGTTTAACCCTACTTAGAATAATATATAAGTAATTATGACAGAACAAGCCTT
TTACAATCAAGTTCTAAATGGAACTGCTATGAAACGACTTATTAG
Found at i:22862 original size:17 final size:16
Alignment explanation
Indices: 22836--22869 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
22826 GAACTCGGAC
*
22836 CTCACCCTCCTTGTGT
1 CTCACCCTCCTCGTGT
22852 CTCAGCCCTCCTCGTGT
1 CTCA-CCCTCCTCGTGT
22869 C
1 C
22870 ACTTGCAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.06, C:0.47, G:0.15, T:0.32
Consensus pattern (16 bp):
CTCACCCTCCTCGTGT
Left flanking sequence: Indices 22336 -- 22835
GACGAACCGATACGCTATGGTCCCCGCCAACACTTAGATATAGTTACTATTCAAAGCCGTCCGTA
GTAGGCAATTGATCCGCCCCCGGGTACATAATCTAATAAGGTCTATTCTGAACTCAAATACTGAA
AAAACCTTCCACCAGACACGTTCATGCGAGGGAAGAATATAGGAAGAGTTCTCACTCACTTGATT
ACCTCATAATGGATGCGCCAGGTGTGGATGGTGCTACGAATGAACCCCACGTTGGGAATCTCTCC
TACTATATATATAGTAGTAGGGCTTGATCTATCAAAGTGGGATTTAGAGACGGTGCGTGGGCCCC
CGCTGCGCGCCCCTTTTGTTCTTTTCATTTTGTGTTCTCCAAACGCACCACCTTTTGTTTGTTCG
GTCGGTGTTTTTCAGAAGCCCGAGGCAGCAGTTCATCAAGAGGTTTGGTCGACGATAGAGATTTT
GATGGAGCGAGAGACGACTAATGGAAAGACCTAATGAACTCGGAC
Right flanking sequence: Indices 22870 -- 23369
ACTTGCAGAATAAGTTCCCACCCCATGCAAATAGGGTTCCGCCCCAACCTCAGATGTGTTCCGCC
TCGCACAAACTATGCTAGGCCTACCAATTCCAATCAAACCAATAGTTTCCCTCTGTCTTTCCCAG
CGAGAGACTACCGACTCCCCTCGAGACTCACGTAGTCTCTCGGCTGTCTCGAGTACCAAGTTATA
GTCTTGAGGGCGGGCTATATAAACATTTGGAGCGAAAGGTGCATCTCCTTCAATCCATAAAGACG
TGCAATCCCAGAGAGATAGATAAGCCAAAAAGCCCTCTACGCGAGGTATAAAAGCGCCAGATGCA
CGACACATTTCATTGAGGGTAGAAAAAAGGGAGGGGCGCGCAGCGGGGTTCCCACAGCCTGTCGA
TGAATGTCCGATCTTCCCCTATTGCACTTCATCTCTCTTTATCCTATGCTATGCCTATCTTCGTG
CGAGGTCTCACCTGTCTTTCAAAGGAATTGACTGAAAGGGGTGCA
Found at i:26542 original size:15 final size:15
Alignment explanation
Indices: 26518--26548 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
26508 CTTCTGATTA
26518 TTGCTATTTTTCACT
1 TTGCTATTTTTCACT
*
26533 TTGCTCTTTTTCACT
1 TTGCTATTTTTCACT
26548 T
1 T
26549 CCCTAGTCTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.10, C:0.23, G:0.06, T:0.61
Consensus pattern (15 bp):
TTGCTATTTTTCACT
Left flanking sequence: Indices 26018 -- 26517
ACGTATCTTGTGGTGTTGGCAGTTGAGAAAGCAAGCAAATAACTCTCTCATCCTAATCTAATATA
GATAAGCAGCTTTCTTTATCAGCTAGTAAGTATAAGTAAAGGAACGGAACTTCCATCTCCAAATC
TCGCTCCTGTAGCTTATGTAGCTCTAGTAGCGAAAGTAGCCGTAGTGGCTATACTAGAACTGATC
CATACCCCATTCGTTACTGCCTGAATTCAAGGTTGACTTCAAAGTAGTGCTTCGTTCAAAGTCCA
CAAAATGGAATCGTGTGATAAGCCAATTCAAATAGGCAAGACTGAGGTATGGTAGTGGTCCCTTC
CGGTCAGCTGAGAAGTGAGAAAACACGGCTATATGATCAAAGTCGAGTAGCTTCCCTAGTTCCAA
TGCCTTACCAATTTTTGGACTTGACCTAGCCCCATTATAGGACGACTGATGCCCGAGATATTGTA
CTAATCCAGTTTCTTTGACTCAAACTCCTAGTTTCCTTCTGATTA
Right flanking sequence: Indices 26549 -- 27048
CCCTAGTCTCCCTAGTTGCTACTCTGAATCTGCTTGCCCCACTACTTATAGATCTTCCTGAGCTC
CCAAGCGCTATGTTGGTTGACCTAACAACGACTTACTACTCTTTCTTCCGGCGGCCCTTGCCTGC
CCTACTTCACGTTTTATTGCAAATGAAGAAATTCACTCCTTTGAATCTAGTAGTTTCCAGTTAGT
GAATTCAGTTTCGTAGTCCAATCAAATGCCAACGATTTGAAGTGAATTGTAACAAGTTAGACTGG
TGGAGTTGTCTTTGAATCTATGACTTCTTCCTGGCCTACCGGATGAATAAGATTTCTTCTTCTTC
CTGGCCTATGGCTTCTTGTACAATAGGGGAACTCACCTATTAATTAGATGTCTGTTGTGGCTTTT
GATCTAGCTTCTCTGTTCATGTCTTTAAGCCTGCCTCATGTCTTGCCTTCCTACTCGATAAGAAA
CGAAACTAGATTCTGTCATTGAATGGGGATTTCTTTCTACTGTTC
Found at i:43177 original size:22 final size:22
Alignment explanation
Indices: 43134--43177 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
43124 CGTGACTTTA
* *
43134 CCTATTCAATATGTCTCTCTTG
1 CCTATTCAATATGGCTCCCTTG
43156 CCTATTCAATA-GGCATCCCTTG
1 CCTATTCAATATGGC-TCCCTTG
43178 TCAAAACAAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 2 0.11
22 17 0.89
ACGTcount: A:0.20, C:0.30, G:0.11, T:0.39
Consensus pattern (22 bp):
CCTATTCAATATGGCTCCCTTG
Left flanking sequence: Indices 42634 -- 43133
CAAACACCTGTCTATGCCAACTAGTTCTCAACCTCTCTCGGCTATTAGTCACGCATCCCTATACG
CCAGTTAAGAAACAACGTCACGCTCGGTTATTTCTAACAGAAACCTCCCCTTGATATCTTCAGCA
TCCCGCTTGACTTACCATACATACTTCTTCCTACTTTACCTCTGCATATAATCAATACACCTACC
CTGCCATATGTTTCTTCTTTGCTTTCAGCGTATACTTGATCTCGTGCACAAATCTATTCCTACTT
GTTGACCTGTCCCTACCGCTCCGTGGGCTTTGCTATACTCACTTTGGGCTATTCCGTGCTCAAAA
GCCTATTTGATTTCTCTTTGACATAATCCTAAATGCCCTATACATACTATACCGGTGCATACCTT
TGAGAACCCGGTACTTTTACCGAACCTACTAAACCTATGAGTTGACTCGTACATCATCACTTCTT
CTTGACTTATCTGTGACTGCATATTCCTAGCAAACCGTGACTTTA
Right flanking sequence: Indices 43178 -- 43677
TCAAAACAACTATACCTGTCCCTCTTTCTAGCATATTCCTTGGCAAGCTACCAACTACTACTTTG
ACTTATCCCTATTCTTGACTTATTCCGTGCCTATGAGTTTACCGGTGCCTATACCATGCCAAGAA
CTATCTTGATACGCATGCAGCTTTTCCTAGCACACTAACTTCCCCTTTCCGCCCTAGCTAGCTCT
AGTCCTAATAAACAAATGCAACTCTTTCTATATCCAACTAACCTAGTCCTCTCATGGCCTAATTT
GAGACCGGTTTGCCGGTACGTAGTGCTATGGTCAAAGAAATGACATTGGAGATTTCTCAAGACGA
AACCATAACCAAGGGGCAGTTCCAAAATGGTACCATGTCATTCTCTGTTCTTTCTTCTCTTATTG
AATTTCGTGTGTCGATCCAGAAAACCTTTCCTCCTCTTCACTTCACCTACTATCTATGAGCAGTA
AGCAAGCAGTTTTTGACCTGAGCTTAGTGCCGTAGCTCTTTTCGT
Found at i:57216 original size:36 final size:36
Alignment explanation
Indices: 57156--57231 Score: 91
Period size: 36 Copynumber: 2.1 Consensus size: 36
57146 AAATAATAGT
* * *
57156 ATAGTATCTTGAGGAGATAAGGAGACCCATGTAATA
1 ATAGTATCTTGAGCAGATAAGGAGAACCATGGAATA
* *
57192 ATAGTATCTTGAGTCA-ATAGGGAGAAGCATGGAATA
1 ATAGTATCTTGAG-CAGATAAGGAGAACCATGGAATA
57228 ATAG
1 ATAG
57232 CATGTTGATG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
36 33 0.97
37 1 0.03
ACGTcount: A:0.39, C:0.09, G:0.26, T:0.25
Consensus pattern (36 bp):
ATAGTATCTTGAGCAGATAAGGAGAACCATGGAATA
Left flanking sequence: Indices 56656 -- 57155
GATGAGAGTGAAGTAAGCTGCAGATAATTCCCTGAAACCATCGGCTTGACAAAGCTGCTGAACCA
TACTAGAGGCCATAGTTAGTGCACCGTCGTTACCAGGACCGGAAACTGGGACGCTTGTCAGACTT
TTCCGGCGATGAAGGCTCACTTGTGAGATTGCATGTACCAAAGTGGTAAGCGGAGCCTAGGTGTC
GATATGTGGAATATATCTGGACGAGTGGTCGCGTCAGTTGGTTTTTTGGCTCGTTGGCTTGGGTG
GATTACCAAGGATGCCAGTTGAAGCTCTCCGGTTTCCGGATGCAGATAATGCTTAGGACCAACGA
ATTGATGTGAATACGGGCCGTTGTTATCGTTATCGTATTCCTTTCAATCCACAGACATGACTCAG
TTGAAATGGTTTCTCTGAGCTGATGGAGTACGATCCCCCTGGAAGAAGATGAACGCGTTCCAATT
GTCGTTTGACAAGATAAAAGGGGCGCGCAGCGGGGAAATAATAGT
Right flanking sequence: Indices 57232 -- 57731
CATGTTGATGAGCACTTCACCCTCGGAATAATAGTATGTTGATGATCCCCGCTGCGCGCCCCTCA
TTCGGAAATAGAGTCTTCCTTCCTACCCAGCGAGCCAGAAGGCTCGTCTTCCTACTGCATTTTGA
ATTTGCTTACAACACGTCGAGCCAGTGACCGAGGATATGCTTTGTCCCGCCTCTGACCGGAGAAG
GTGCTGTCTCTGTTGCAAAGAAGCTGGTGGATTATTGAAAATTACCAACAGAAGCACATCCCTCG
CCTTACGAAACATTGTGAATTGTGGGAACTCAGACGCTGCATAATAGAAGTAGGAAGCACCTTTC
TGATTGATACATTGCTGGTCGACTTCTCTAATGTTTTTTGATTATCAAATTGATCGAAATCTGTG
CTTTGTCCAGTGTAAACACCCCTTTTTTCTGATACCTCAGAGGTCCGCCTCACGGATTTAAGTCC
GCTACTATATGACTCCCTGAAATGCAAGTCGTTGGGAAGCTGCAT
Found at i:76623 original size:28 final size:28
Alignment explanation
Indices: 76582--76643 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
76572 TCCAATACAA
* *
76582 GTCTCACTGTCTATGGTCATTGGCTAAG
1 GTCTCACTGCCTATGCTCATTGGCTAAG
*
76610 GTCTCACTGCCTATGCTCGTTGGCTAAG
1 GTCTCACTGCCTATGCTCATTGGCTAAG
76638 GTCTCA
1 GTCTCA
76644 GTCCTCAAGT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.16, C:0.26, G:0.24, T:0.34
Consensus pattern (28 bp):
GTCTCACTGCCTATGCTCATTGGCTAAG
Left flanking sequence: Indices 76082 -- 76581
TCTCTTCCTTTTCGAACTTCACTATCAGCTATCAGCAGCGCCCTTCGCTCCTATCTCAGTCTCAA
AACCTTGGCTCAGAAGATCTCTGCCTTAGTCTTTGCCGAGTCATCTTTCCTATCGTCGAGTAGCT
CCGCACCTCTGCTTGCCTTGAGCTTCTTTGCTTTCCCCGTTAAGGCAAGACTGGTCAAGAATACC
AAGAGTGGAACTCAGTCATATGCCCCCAGCTCCAATTCTTCCTCCCCGATCTCAGAGATCTTAGA
ACTTCGGATAATCCTTCTTTGTCGATCGTCTTTGGGGTTATAGCTCCGCTGCTTTATGTTCATCC
TCTATTCCTTGATGCTGACCTAGTCCTCCGGCCTCTGCTTTATAGAAAGCTGATCCTTTGAAGAG
GGCGGCTCTATATAGCTATATTCATAGGTTCCGCTCGCGGAAAGGTATCTAGTGAAGTTCGATCC
CCGCTGCGCGCCCCTGCAGGTGGTGTTTAGGGAAGTCCAATACAA
Right flanking sequence: Indices 76644 -- 77143
GTCCTCAAGTAGCACTCTTTCTTTGATGTAAGCCACAGAGAAAAGTAGCACTCGATATGTTGGGT
ATGGTCGTTGGGTAAGGTGGGTCGTATCAAAAGGCAACTCGCTATGGTTGTGTGTAAGTTGTCTC
GTATCTCAAGCCATTCTCCCTCCCTATCTTCATGGGTTAAGGTTGGTTATATCTCAAGTCCCAGT
CCTCTGCTTAGCTCTTTGATCTAGTCCCAGTCCTCTGCTTACCACTTTTCTCAACCAAGAGATGT
GATTGCATTGCAGGGGAATATCTATATCAAGATCTTCGAATGGACGGGGCACATGTGATAAAGCA
AGGGCGATTCACTACTTTGTTTTCTACTTGGTCTTTCTCTTTGGGAATCATAGCGTAATCAAGTC
TAAATGGCCTTGGTAACCTTTGCTTATGATGAGGCGCTGGTAAGGAGGATCAAAAGGGGAGCTTG
TGGAACAGAATGACTTGACTGAGTCGCACCGAGGTGCGCAGCAAC
Found at i:85331 original size:34 final size:34
Alignment explanation
Indices: 85279--85359 Score: 108
Period size: 34 Copynumber: 2.4 Consensus size: 34
85269 GTACATTGAG
* * * **
85279 TCATTGGAATAGTTGTTCAAAGGGCTACATCGCC
1 TCATCGGAAAAGTGGTTCAAAGGGCTACATCAAC
85313 TCATCGGAAAAGTGGTTCAAAGGGCTACATCAAC
1 TCATCGGAAAAGTGGTTCAAAGGGCTACATCAAC
*
85347 TCCTCGGAAAAGT
1 TCATCGGAAAAGT
85360 AGTACTCCTG
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 41 1.00
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (34 bp):
TCATCGGAAAAGTGGTTCAAAGGGCTACATCAAC
Left flanking sequence: Indices 84779 -- 85278
CTTTACTGCCTTCTTTCCACGAACAAAGGAGTTTGAATACCTAATTGGCAGCCTTCTTACAACGA
GCTAAGGAGTGGAGCTTTCCCTTTGAACTTGAATCATCACGTGACTGCTAAAGCAAGCTAAGCTT
CACACGGTCCTGAAGTCGAATCTCCCATTCCTGGAAAAAGAAAAAGAGGGTGGGTACCCTTTTGA
AAAGGTCTAGTCGGATCTACTTCCGCTGACGAATTGCTCCTTTTCTATCCTGCACTCCAATACTC
GCACTAGCTGCTCTGGAGCGAACTCGGGCTTGAACTTCAATTGGCGCATGAGCTTAAGCTGTTAT
CGCTCTTTTTTTCTCTTTGTTCATGAGTCTCACTCAGGTAATAGAGATGTCCCTGTCTATGTTAA
TGGAGAAAAGGCTAGGGAGAAGGTGCTGTCTCTGTTGCAAAGAAGTAGCTCTTGCTGCTGGTAAG
TCATTCAATTGGTATTCCCTCTTGCCCTTTCTTCTGTACATTGAG
Right flanking sequence: Indices 85360 -- 85859
AGTACTCCTGAAGTGGTGCCAGGGGTGACATCGAGTCATGGGAAAAGTCCATAGTAGTGGCAAGG
GGAAGCAACGAGTCATAGGCAATAGTACCTCTCGTGGGATGGGGAAGGGAAAGGACAAGACAAAG
AAAGCAGGGAAGGTGGTGGATTCTTCTAAAGGCTCAGCTTCTTTGGTGTCCTACGATACAGATGA
TGAAAGGGATCGCCTCACCTCCCATTGCTGACTCTCCGGAGAGAGTTGACGCGAGGGCAAATTCT
GGCAAGCAATAAGAATCAGCGGATACTTTAGGCGGGATCATTTTCAAGTGAACCACGACGACGTG
ATTCAGGGGAGTCCTTTTCGGCACCACGAAGGTCAGATGATTCTGGGGTGGAGGATGGCAGTCAT
CATTACTCTTGAACGTCGAGCCATATCAATTGGTGAGCAAGGTTCAGCCTATCTCTGAAATCTGA
GAGCTTCAATTGCTTCTTTTCTCGATTTGGTGGAAGGGCTAGTCC
Found at i:109746 original size:23 final size:23
Alignment explanation
Indices: 109716--109762 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
109706 ACCCATGAGT
*
109716 TCTGTAAGGTCACTTTCGTTCTG
1 TCTGTAAGGTCACTTTCGCTCTG
109739 TCTGTAAGGTCACTTTCGCTCTG
1 TCTGTAAGGTCACTTTCGCTCTG
109762 T
1 T
109763 TATGACTTCC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.13, C:0.23, G:0.21, T:0.43
Consensus pattern (23 bp):
TCTGTAAGGTCACTTTCGCTCTG
Left flanking sequence: Indices 109216 -- 109715
CCCATGTAGCTTGCTTCCTCAGGTGTCAGATTGGACCATTGAAGCCAAATCTTGGAACTGGCTCC
TTATTTCTCTTCACCATTCTCCTCTCCAACACAGCTACAGGAGCCACCCTTGTCATTCCTTCAGA
TCCCACCAATGGAAGGATAAGAGAAGGAAGACGCCCCCTATCTTCTTCTTGAACTTAGATACACG
AAAGACTGGCCAAACAGCCCTGAGGCAACTGCAATTTCTAAGCAACTGTTCCTACCTTAGGCAAT
TACCTGAAATGGCCCATAGTATCTGGAATGGACTTGGAGCCCCTTCCTTAATGAGACAGAAGTCT
GCCAGGCTGCAATTTCAAATAAAGCCAATCACCTCTCAGACCTCCGCGTGATTCGTAGAAATGCT
TTCCGATGAAGGACAAGTGAAGTACAAGTGAACCCAATTTCGTAGAACAGCTTTCCCAGCCATGA
CTTATGACTTCCAACTCTCCATTGACTCCGTTCCGACCCATGAGT
Right flanking sequence: Indices 109763 -- 110262
TATGACTTCCATCTCTTTCCCAGCCATGACTTAGGAATTCCATCTCTTCTGGAATAACTCTCGAA
CCGAGGGTCTTGTTACAAGTTGGTATTTTCCTTTTTTGATCGCCAAATAATCAAGTATAAGTTCC
GATCACTTAGACTTATGTGGCGCATGCACGAATGAATAATAGTGTAGCGGAGCGGCCGTCTTTAT
AGGCCTGGGGGGATTATTCTTCTTGGAGACTCTCAACTCGTTTGAAAGCAGATGAACGGAGACGG
GTGAAAGAGGAGCATCTTACCTTTCCCTCATTATAGGAAAAAGAAAATTCAATGAGGAGTTACTA
TTCGGAGAAAGAGCGGAACAAAGATGCAGATCACCAACTAGAAGATGTTGCAGAAAGGCTCAAAC
TGCCGCAAGTACTAAAGTGAGAAAATGACACTAAAAACGAGAGAATGTCACCGACTCACTCTTCG
TTGTATTATCTCCCATTGACTATTTCTTTCACTCTTTGACTAGTG
Found at i:166012 original size:22 final size:22
Alignment explanation
Indices: 165987--166060 Score: 87
Period size: 22 Copynumber: 3.4 Consensus size: 22
165977 ACTTGAGTGA
165987 GCTGGTACGAGTAGTTGACTCG
1 GCTGGTACGAGTAGTTGACTCG
* * *
166009 GCTGGTGCTG-GAACTTGACTCG
1 GCTGGTAC-GAGTAGTTGACTCG
*
166031 GTTGGTACGAGTAGTTGACTCG
1 GCTGGTACGAGTAGTTGACTCG
*
166053 GTTGGTAC
1 GCTGGTAC
166061 TGTAACTTGA
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
21 1 0.02
22 41 0.95
23 1 0.02
ACGTcount: A:0.16, C:0.18, G:0.36, T:0.30
Consensus pattern (22 bp):
GCTGGTACGAGTAGTTGACTCG
Left flanking sequence: Indices 165487 -- 165986
GAGACTGTTGATGAGCCAGAATGAAATGGAGTATGTTGATCCCAATCAAGTTCCAGGAGAAAGCA
AGCTAGTAAACGGGGAGTTCACGACCAACTGTTTGAGTGTCAGGGGTGAAAGAGTCTGGCGAAAG
TGATGAATCACTAAAGTAGGGAAAGACATATTCAAGGAATTCCTACAATGACGGAGCGTCAACAA
TGGGAGTAAGTAAATTGAGAGAAGGAAGGAGCTAGTCAGATAGGCTCATCACATTGTGAGCTTTG
GCTTCCGATCTAAGGTCGTTGAAAGGTAGATGATGATGAAGTCACCCTCTTGGAATCCAAGATAA
GAAGATCAGATGATTCAGTTATCTCTTCTCCCTATCCCGTGGATGTTGACTCACGCGGCTTGGAT
GATACCGGTAACCGGGGCTTCTCATGGTGCAGGTACAGGGACTGGTTATGGCGTGCACGGTGTAC
TTCAAGTGCTGGTACGGGTAGTGGACTAGGCTGGTACTTGAGTGA
Right flanking sequence: Indices 166061 -- 166560
TGTAACTTGATTCGTATGGTGCATGACTCGGCTCTTTGGGTAGATTGCTTCATCTGTTTCCTTTC
CTTCCTTGGCGTAAGCACATGGCGAAGGAGTTAGCGAGAACTAACACTGTCGCGTTCACGGAATG
CCTGGGGTCCTAAGAAATGACAACCGTCAGTGCGGAGTTGGGAAGAGTTGATCCAACCCCTCGGC
AAAGTAAGTGAATAGGTGACTCCCAGGAGAATTCCAGAAAATCGGGAGAACAGGTCCAACGTGTG
GGGTAACCGTCAAGAGCTAGAGTAATCTCACTAAGCTCATATACCCACGAGCAAGTAGCGATCCC
ATCATCAGGGTGACCTGAAAGGGAGCAGTGTGAAAGGCCAACCGTGAAATGCCACTTGAACCGTT
ATCCGACAGATGCTGAGGGGCGCGCAGCGGGGATCTCTTTTCCCTTTCTTTCTTAACCCTTCGAT
CGCTTGACTTTCACCTTCGGTCATGGAAGAGGCGAGCTATCAACT
Found at i:166070 original size:22 final size:22
Alignment explanation
Indices: 166001--166070 Score: 79
Period size: 22 Copynumber: 3.2 Consensus size: 22
165991 GTACGAGTAG
* * *
166001 TTGACTCGGCTGGTGCTGGAAC
1 TTGACTCGGTTGGTACTGTAAC
* *
166023 TTGACTCGGTTGGTACGAGT-AG
1 TTGACTCGGTTGGTAC-TGTAAC
166045 TTGACTCGGTTGGTACTGTAAC
1 TTGACTCGGTTGGTACTGTAAC
166067 TTGA
1 TTGA
166071 TTCGTATGGT
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
21 2 0.05
22 36 0.92
23 1 0.03
ACGTcount: A:0.17, C:0.17, G:0.33, T:0.33
Consensus pattern (22 bp):
TTGACTCGGTTGGTACTGTAAC
Left flanking sequence: Indices 165501 -- 166000
GCCAGAATGAAATGGAGTATGTTGATCCCAATCAAGTTCCAGGAGAAAGCAAGCTAGTAAACGGG
GAGTTCACGACCAACTGTTTGAGTGTCAGGGGTGAAAGAGTCTGGCGAAAGTGATGAATCACTAA
AGTAGGGAAAGACATATTCAAGGAATTCCTACAATGACGGAGCGTCAACAATGGGAGTAAGTAAA
TTGAGAGAAGGAAGGAGCTAGTCAGATAGGCTCATCACATTGTGAGCTTTGGCTTCCGATCTAAG
GTCGTTGAAAGGTAGATGATGATGAAGTCACCCTCTTGGAATCCAAGATAAGAAGATCAGATGAT
TCAGTTATCTCTTCTCCCTATCCCGTGGATGTTGACTCACGCGGCTTGGATGATACCGGTAACCG
GGGCTTCTCATGGTGCAGGTACAGGGACTGGTTATGGCGTGCACGGTGTACTTCAAGTGCTGGTA
CGGGTAGTGGACTAGGCTGGTACTTGAGTGAGCTGGTACGAGTAG
Right flanking sequence: Indices 166071 -- 166570
TTCGTATGGTGCATGACTCGGCTCTTTGGGTAGATTGCTTCATCTGTTTCCTTTCCTTCCTTGGC
GTAAGCACATGGCGAAGGAGTTAGCGAGAACTAACACTGTCGCGTTCACGGAATGCCTGGGGTCC
TAAGAAATGACAACCGTCAGTGCGGAGTTGGGAAGAGTTGATCCAACCCCTCGGCAAAGTAAGTG
AATAGGTGACTCCCAGGAGAATTCCAGAAAATCGGGAGAACAGGTCCAACGTGTGGGGTAACCGT
CAAGAGCTAGAGTAATCTCACTAAGCTCATATACCCACGAGCAAGTAGCGATCCCATCATCAGGG
TGACCTGAAAGGGAGCAGTGTGAAAGGCCAACCGTGAAATGCCACTTGAACCGTTATCCGACAGA
TGCTGAGGGGCGCGCAGCGGGGATCTCTTTTCCCTTTCTTTCTTAACCCTTCGATCGCTTGACTT
TCACCTTCGGTCATGGAAGAGGCGAGCTATCAACTCCTGCCTATA
Found at i:167214 original size:42 final size:43
Alignment explanation
Indices: 167166--167263 Score: 110
Period size: 48 Copynumber: 2.2 Consensus size: 43
167156 TCTGAATCTA
*
167166 CTCAATGCAGAG-AAGAGG-CAGAGTCTTCTTCTGGTGACTATT
1 CTCAATGCAAAGCAAGAGGCCA-AGTCTTCTTCTGGTGACTATT
*
167208 CTCAATGCGATCAAAGTCAAGAGGCCAATTCTTCTTCTGGTGACTATT
1 CTCAAT--G--CAAAG-CAAGAGGCCAAGTCTTCTTCTGGTGACTATT
167256 CTCAATGC
1 CTCAATGC
167264 GATCAAAGTC
Statistics
Matches: 47, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
42 6 0.13
44 2 0.04
46 5 0.11
48 32 0.68
49 2 0.04
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (43 bp):
CTCAATGCAAAGCAAGAGGCCAAGTCTTCTTCTGGTGACTATT
Left flanking sequence: Indices 166666 -- 167165
GGAATAGAAGAAGAGAGATTTCAGCAAAAAGAGAAAATAAATTCACTGAAGCAACAGAAGGGAAT
CGCTTCGGGCAGGCAATTGACCAAGTCAGTGGCCCCTAAGCTCGGCGCTATTGGCAAGTGTGCCC
CTAACTCCGTCCGGCAGGCAAAGACAAAGTGGAGAAAGACGACTGTAGCTTTAGATAGAAATGGA
GATAGCATCTGATCGCATATCCCACTGTTAGTAAGTCAGCGCGCAAAAGAGCTTTTCTTTACTGA
GACTAGATCAAAAGTCAAAGTCTTGTCGAGACCAAAAGCAAGCCCTTATTTTCAAAGAGAAGAGA
TCGACTACACTAGCGAGAAACTCACTACTGAGTCGCTTATGGTCTTCGTCACTCCTAACGTTCGT
GAGTTCTTGATTTCGAAACATAAGCCCTTGATTTATCGCTGGGACAGAAGCTTCCTTCGAAAGTG
AGGTGGAAGAGAAGGGGTCGGAGGATGCTGAGTCTTCTGAATCTA
Right flanking sequence: Indices 167264 -- 167763
GATCAAAGTCAAGAGGACACGTCTTCTCATGATGACTCCCGGGCTCGTTCTTCCAAGTATAGTGA
TCGAGAAGGTGTGATTCTGGCCAAAAGTTGGTTCGATTCCACATGGAAAGAATTCATGAAAAAGA
TAGAGAGTGAGTCACACAAAGAGCCATATACAGGCTTACTCTTAGCTTCGATGTCCTTTCGTGCC
CCATACATAAGTTGTGCCGAAATATATCCTATCGTCTTTGCTATTATGAAACTGCTCATAAAGTA
TGTTTATGGTACGGGCTATGAGTTGGGCGCTTTTACGATAGGTTATCGTCTTCGAAAGCCAGATG
GTACGCGAATCAACTTTATTATAGGTGGTGCTCTTCCTTTGGTGGATCACTTGGGTAATGCTGTT
CCTAACCTGACTGTCTATCAGTGCATTCTTGAAGTGGTAGCACAAATGGCTGAGCGATATCACGA
TTCCATATTAGAAGGCGTGTACGTGAGAGTCTACCTTGGCTCAAG
Found at i:167289 original size:48 final size:48
Alignment explanation
Indices: 167178--167290 Score: 183
Period size: 48 Copynumber: 2.4 Consensus size: 48
167168 CAATGCAGAG
167178 AAGAGG-CAGAGTCTTCTTCTGGTGACTATTCTCAATGCGATCAAAGTC
1 AAGAGGACA-AGTCTTCTTCTGGTGACTATTCTCAATGCGATCAAAGTC
* *
167226 AAGAGGCCAATTCTTCTTCTGGTGACTATTCTCAATGCGATCAAAGTC
1 AAGAGGACAAGTCTTCTTCTGGTGACTATTCTCAATGCGATCAAAGTC
*
167274 AAGAGGACACGTCTTCT
1 AAGAGGACAAGTCTTCT
167291 CATGATGACT
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
48 58 0.97
49 2 0.03
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.29
Consensus pattern (48 bp):
AAGAGGACAAGTCTTCTTCTGGTGACTATTCTCAATGCGATCAAAGTC
Left flanking sequence: Indices 166678 -- 167177
GAGAGATTTCAGCAAAAAGAGAAAATAAATTCACTGAAGCAACAGAAGGGAATCGCTTCGGGCAG
GCAATTGACCAAGTCAGTGGCCCCTAAGCTCGGCGCTATTGGCAAGTGTGCCCCTAACTCCGTCC
GGCAGGCAAAGACAAAGTGGAGAAAGACGACTGTAGCTTTAGATAGAAATGGAGATAGCATCTGA
TCGCATATCCCACTGTTAGTAAGTCAGCGCGCAAAAGAGCTTTTCTTTACTGAGACTAGATCAAA
AGTCAAAGTCTTGTCGAGACCAAAAGCAAGCCCTTATTTTCAAAGAGAAGAGATCGACTACACTA
GCGAGAAACTCACTACTGAGTCGCTTATGGTCTTCGTCACTCCTAACGTTCGTGAGTTCTTGATT
TCGAAACATAAGCCCTTGATTTATCGCTGGGACAGAAGCTTCCTTCGAAAGTGAGGTGGAAGAGA
AGGGGTCGGAGGATGCTGAGTCTTCTGAATCTACTCAATGCAGAG
Right flanking sequence: Indices 167291 -- 167790
CATGATGACTCCCGGGCTCGTTCTTCCAAGTATAGTGATCGAGAAGGTGTGATTCTGGCCAAAAG
TTGGTTCGATTCCACATGGAAAGAATTCATGAAAAAGATAGAGAGTGAGTCACACAAAGAGCCAT
ATACAGGCTTACTCTTAGCTTCGATGTCCTTTCGTGCCCCATACATAAGTTGTGCCGAAATATAT
CCTATCGTCTTTGCTATTATGAAACTGCTCATAAAGTATGTTTATGGTACGGGCTATGAGTTGGG
CGCTTTTACGATAGGTTATCGTCTTCGAAAGCCAGATGGTACGCGAATCAACTTTATTATAGGTG
GTGCTCTTCCTTTGGTGGATCACTTGGGTAATGCTGTTCCTAACCTGACTGTCTATCAGTGCATT
CTTGAAGTGGTAGCACAAATGGCTGAGCGATATCACGATTCCATATTAGAAGGCGTGTACGTGAG
AGTCTACCTTGGCTCAAGGTATTATAAAGACATCAAAAAAGATGT
Found at i:207199 original size:22 final size:23
Alignment explanation
Indices: 207173--207216 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
207163 TACGAGCACA
*
207173 AAGCCTGTCTCTACTC-ACTAGT
1 AAGCCAGTCTCTACTCTACTAGT
*
207195 AAGCCAGTCTCTAGTCTACTAG
1 AAGCCAGTCTCTACTCTACTAG
207217 CAAGGGTAGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.30
Consensus pattern (23 bp):
AAGCCAGTCTCTACTCTACTAGT
Left flanking sequence: Indices 206673 -- 207172
CGAAACGGGCTAGGGCTGAGCTTGAGCTCTTTCTTATTAATGCCTGCCTATTTCCTTCCATACAG
GTTGAGTTTTGAGTTGTGTGTTTTCAGTTTGAGTCTTTCCATTTCCCAGCGCTAGTTGTTTTGTC
TATTCCACCATTTTCCGTATTCCATTTCTCTCATTTTGGGATTATGTTAAGTGAGACTCCTATTG
ACTGACATATGTTTTCTCATGTGATCTCAATTTAGTGGGGTGGCGCTTTGATGGCATACTTTCAA
TAGGGGATAACTTGATCATGGGTCTTTTTTGGGTAAGGCCCTTAGCCCTTTGGTAAGAGTGAATG
ATCAGAATAGATATCTGTATTCACTTCGTCAGAATAGCCCTTGACCGATCACCTTGGCTCTTCTT
CCTACCCGTTATACGACTTGAAGTTGAAGGACATTGAAGGCCTAGTTTTGTCTTCTCTTTCCAAC
CCTTTTTTGATTCAAATCACAGCAAGTAGCTTATCTACGAGCACA
Right flanking sequence: Indices 207217 -- 207716
CAAGGGTAGAGTTCGATCTGCCGCAACGAGTCTACTCTGCTTTCAAGGGAGAGAGGGGGAAAGGG
AGAAAGAGGACTTTGGATCTGATCGATCGAATGGGATGGAATAGGTGGGAGGGAGAGGCTTTGGA
TCTGATCGTCTGAATCAATCGCTGGGGATTGTTTCTTCTCCACTTGAGAAAGACAGAGGGGCGCG
CAGCGGGGGTCTAGGAATTGATTGAGAAGTAGGGGGTGCCACAGCAGATCTTCTGTCCGAACCCA
TCTGTTTACGACCAGTGGCACTTCCTCAATTCTTCTGAAAACGGCAGCCACGGCAGCCCATTTGG
TCTTAGGCAGGCACAAACAATTATCCCGCAACGAAAGAAACTCCCTGGCTTCCTCCCTGCCCCTA
TTTCTTTCTAATCAGACTCTTTCTCCGACACGAAAGCAAGCGTGTTCAGAGGTCATACCACCGCG
CCGATACATTAAGAAGAAACGTGGATATCAGATCCTATCTTCAAA
Found at i:220558 original size:31 final size:31
Alignment explanation
Indices: 220521--220589 Score: 129
Period size: 31 Copynumber: 2.2 Consensus size: 31
220511 GACTTCCTTT
*
220521 TTCTTCCGACCAAGGTCCCTGTCCTTTTGCG
1 TTCTTCCGACCAAAGTCCCTGTCCTTTTGCG
220552 TTCTTCCGACCAAAGTCCCTGTCCTTTTGCG
1 TTCTTCCGACCAAAGTCCCTGTCCTTTTGCG
220583 TTCTTCC
1 TTCTTCC
220590 TAGGAGGTGA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.10, C:0.36, G:0.16, T:0.38
Consensus pattern (31 bp):
TTCTTCCGACCAAAGTCCCTGTCCTTTTGCG
Left flanking sequence: Indices 220021 -- 220520
GGCTAATTGAAGACTGACTACTGATCAGGTCAAATGAATACTAACTTACTGACGAGTCTATCAAA
AATCGATCACTCAGCCTGCCGCTAGCCTATCTAAGCGGCGTCAGCGGCCCCCCATTATGAACTTA
CGTTTCAAGTGGAAAGAAAGGACTGAAAGCAGAGGCGTAAGAAGTGGATCGCAGTGAGGAAGGGA
ACATTAGCTCGGCAAAGTGCGCTAGTGACGAAAGAAGCGAAGAGAGGTATGCGCCGGAACATCCT
TTCCACTCCATCGGAACACCGGAAGAACGTCTTTCACCTGAAAAGGCAACCTCTCCCTTCCGGCG
GATTCGTTCAAAGAAAAAGAAAGGATTCCCCGCTGACGCACTTCCTACGGGTTACACCGCAATGA
CGCCTTCTGTAGCCTCTTCCAACGTGATTCCGATTCCTAGTTATGCCAAAATGACGGTCTTTTTT
CGTCAATAATGGGATTGGCGCGTAAGTCAGAAAGTGACTTCCTTT
Right flanking sequence: Indices 220590 -- 221089
TAGGAGGTGAGTTCTTTGTACGACCCCGCTGTGCGCTCCTTCTTCAGGACAAGGTAGCTTGGGAA
GGGCTATTAGCTCATGGCCGCACGAGTGCGGTGATAGACTGGTAGGGTTGTTTCAACTGCTGATT
CATTGGTGGAGCTACCTAGCTTCAGTCGATAGTGCTTTGTTTTCCTGGAGCTGTTCAAAAGTCAA
AGTACTAGACTAGAAGAAGGGCTGAAGTAGTCGATTGGCGGTGAGAAAAGAATATGAATAACGAA
GGGTCAACTGAGTCTTTCCTATTCCGGGTCACTAGCGGATAATCCATCGAGCTAGGGAGAGCGAA
ACAGAATGCCTAAAAGAGGGTGTGAAATCCGGTCCTCAGTGTCTCACCATGAAAGTCGGTTTGAC
TAGGAGGAATTGATTTCAATCAGAAAGGGGAGTTCGATATGGAATCCTAAGTCAGACTAGATGCT
TCACACATGTCTTTCGTTCGGTAGGTCGCTGCCTTGATCACTTGG
Found at i:226889 original size:24 final size:24
Alignment explanation
Indices: 226844--226891 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
226834 ACTTTCAGGG
*
226844 CCTCAGGCATAGCGAGCGATAGAA
1 CCTCAGGCATAGCGAGCCATAGAA
* **
226868 CCTCGGGCATAGTTAGCCATAGAA
1 CCTCAGGCATAGCGAGCCATAGAA
226892 GAATCATTAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.31, C:0.25, G:0.27, T:0.17
Consensus pattern (24 bp):
CCTCAGGCATAGCGAGCCATAGAA
Left flanking sequence: Indices 226344 -- 226843
GACTGTATGCTATCAAAGGCGATAGCGGACTCTTCCACTTTTGAGCCACACAAACCCGGCTGGAG
TCGAACAATCTCTACGAGACCGAGGACCTCTTTCTCAGACGAAGGACGTCCGGGCTTTTCCCCCT
CAGCTGCACACCACACTATAAAGGGGTGACAGAGGGCAAAGCTGATGCCCAACCCTTGTCAGCCT
GCTCTTGCTCAGGTGCCTTGAGTGCTGAAGATGGTCTTCGTGATGCGGCGCTATGCTATTCTTCG
TACATAAGACACTGAAGCTTTCAACGGCCAATAATCAAAGCCCGCTTTCGAATCGAATCAGGTCT
AAAGTGAGCGAGAGGATGAAGGTGGTCGCTATAAGTAGCCCTTTGCTTTGAGGTGTGATTCACCT
CCTGGCAGACTTTCAGGGTACGGCTTGGAATGCCCTCGCAATGACTTCAATGAAGCAGCAGAAGC
TGCAGAGGAAGAAGTAGGGGCTTCTTAAAAAACGGACTTTCAGGG
Right flanking sequence: Indices 226892 -- 227391
GAATCATTATTTTTCCCAAGAAAAGAGACCCGGAAGGGATCCGGCTTCGTCGAAGCCCAGCATTC
GTCAGTGTCTTTCCACTCGCATCTTACGAGTAGTTTTCGATGGTGCGAAAGGTAGGTGCCTTTTC
CATCCAGTTGGCTTGAGTGGAATAAAGTGGGATAATTGCTATTTGGTTCAGCGCCGCTATTCATT
CCGGGATGTGTTGCGCTAAGACACTGAAGTAAGAGGTCGGAAGACCAAAATGAAAGAGACTCAGC
ACGAGAAATCGAAGAAGAGATATTCTGAAGACTTGGAGGGATCCACATGATAAGCTACAAGGAAA
GAAAGACAACTGATCTCAGGTCTTTTCCATTAGCAACAAAATTGGCTATTAGTTAGTGTCACAGA
AGATCCCAGAGAGTCAACTAATGTATAGGTAGTGTACAGTGTCAGATTGAGGGTAGGTAGGAGTA
GAGAGAGCTGTATATTTCTAAGTATTCTCGAATTTGCCTTCTGAT
Found at i:278841 original size:27 final size:27
Alignment explanation
Indices: 278810--278867 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 27
278800 TCCGCTCGTC
278810 GTCACATCACGCTTGTCAATTCCTTGT
1 GTCACATCACGCTTGTCAATTCCTTGT
*
278837 GTCACATCACGCTTGTCAATTCTTTGT
1 GTCACATCACGCTTGTCAATTCCTTGT
278864 GTCA
1 GTCA
278868 AACTAACCAG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.19, C:0.28, G:0.16, T:0.38
Consensus pattern (27 bp):
GTCACATCACGCTTGTCAATTCCTTGT
Left flanking sequence: Indices 278310 -- 278809
CTCGTAACTAGTCGGTCCACGAAGGGCAACTCATCCACTTCCGAAGCTACTGCTTTCCGTAACTA
GCGGAGTTCCGAGCTCCGCCTCACTTGTCATATGACTTGCCCCGGCCACGTCAGTCTTCTCGTTC
AGGACCCACCTTTCGGTGCGCCAGCCCTGCCATGAATCGCGCATTCATAGATCTACTAGACTGAT
GCGGCGTTGATGACACCCTGGTATTCCGATTGTCCGCACATCGAAACGGGTGACTGCCCGTACGA
TCCGCCCGGGATAGCATAGTGAGACGACAGACAGTAAGACAGACTGCTGCTGGCCAAAGAACAAC
TACCAACGGCCTTTGCCGTTCTCAGTACAGGGCCAAAGTGCCAGTGTCGTGGGGGGTCGAAGTGT
GGCATAGTCCGTTCTGGGTCAACAACCTTTGATGACTCACATCCCTTTGGCCTCCACCTCGCCGT
TAGTACGTGGCTGGAGTTCGATTCTGTCTTTGTCTTCCGCTCGTC
Right flanking sequence: Indices 278868 -- 279367
AACTAACCAGAAAGCACGGCTGATATGACCAAATTTCTGACGTTTTTTTTAGCTTCATTTCTTAC
GTTTTCCCACTTTCAGAATACAAGTGGTCATCAATGATTCAAGCCAAGGAAGGATTACAAAGTGG
AAATCAAACAAAAGAGAAGTCAATCAAATATATAATGGAAAACATGGAAGTGACCAGCCCCGTAC
CATCCCCACCCTAGCGGTACATGTAATTAAGTACCTAAAAAGAATCTGATTTCCTTTTGCCCCCT
CATAAACCACAAAACCACAAAGCGATTTGTTGAAGCTATGTAATTAGGCTTCTATTTCGGCCAAT
ATATTCACACTCAACCATTAGTTTCGAATTTCTAGTCACTGAGATTTCATTTCCCTTTGATTAGC
AGATTTCAAAGCTGAATTGGCTGGTACGAGTAGGTAGAAAATCCACTTTGGTACCAACATAGCTT
GGTTTGACCGGCTCAAATTACCCATCGTGGGATTGATTTGGAAGT
Found at i:290210 original size:35 final size:35
Alignment explanation
Indices: 290164--290230 Score: 134
Period size: 35 Copynumber: 1.9 Consensus size: 35
290154 TAATAGGTAT
290164 CTTCTCTGATGTCTTATATGCTGTGTAAGTAGGGC
1 CTTCTCTGATGTCTTATATGCTGTGTAAGTAGGGC
290199 CTTCTCTGATGTCTTATATGCTGTGTAAGTAG
1 CTTCTCTGATGTCTTATATGCTGTGTAAGTAG
290231 CAGTGTGACT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.18, C:0.16, G:0.24, T:0.42
Consensus pattern (35 bp):
CTTCTCTGATGTCTTATATGCTGTGTAAGTAGGGC
Left flanking sequence: Indices 289664 -- 290163
CGTTCCAGCTTCGTCATGTCCACTGGAAGGAAGGCCTTCGCTCACGCCAACCTCTGCTTAAGCAG
CCTACCACTTCAAAGAACATTTCTTTGCCTGAGAGAGAAAGAAGAGAGGCCCGCACGGTACCTTT
GCGTATTGCTTACGCCGCCCGCCCTTGGCACTGACCTTTGAGACATACAACGCGTAGCACCTTAT
ACCTTACCTTCTAATGTCACTCTGCCTCAAAAAGATCTCTCTATGGCACTTCTCTGCTTACGGGC
TTGAAACGGTCGATCTCGTGTTGAACCTGAAAGACCTACCGCTCCGTGGGCTGTATTGTTCGCCA
AACGGGAGGACAACGCGGGGGTCTCTGTCGCATCCCAATTTGTACTTGGGCTTAGCGTGCCATCC
CGTTCTTTCTATCAAAAAGGACCATTTTCATCTATGTCTGTATCATGGGATTTCCTATACTCATT
ATCATGAATAGTGGTTGATACTTGTGGATACTTGGTAATAGGTAT
Right flanking sequence: Indices 290231 -- 290730
CAGTGTGACTATGGAAAAAAGTAACAGTCTCATATCTTTCTGCTTATTAGTAGTTCCTTTTCTCA
TTAGTCTTTCTTGATACTGGGTAGGAAAGATGGACCTTCTGATAACTGCCATTCGATTGTGAAAA
GCAAGGACCTTCTATCTATATATCTTGCCTGCCTATTTACTGGTGATTGACTGTCTATGCCCAAA
AAAAGTGATAGAGAACAATCAAGTCTACGGAAAATCCATTGCCCTATAGGAAAGACGCTTCCGAG
TCAAATGAAGAAATCTGGTACAGTCCCAGCTTCAGGTGATACTCTTTTCCTACGTCCCTGGCGAA
GTGTACCTTTCTTTCATCAGACAACATATCGCCGTAGATGTTCCATTCAAAGGCAAGTAGCAGGG
AACTAGTCCACACTCCCGATGGAGGAGATTGTCTTCTCTGATAAGACTTGGACTCTTGCCCTCCA
AGTTGGAGGCAGTGAGACATCTTCCTTCTGTTATGACTTCTTCTC
Found at i:303886 original size:20 final size:20
Alignment explanation
Indices: 303861--303898 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
303851 TTCGAGCAAG
303861 AAGCAACCGGGGTGATCAAC
1 AAGCAACCGGGGTGATCAAC
*
303881 AAGCAACTGGGGTGATCA
1 AAGCAACCGGGGTGATCA
303899 GTTCGAGCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.21, G:0.32, T:0.13
Consensus pattern (20 bp):
AAGCAACCGGGGTGATCAAC
Left flanking sequence: Indices 303361 -- 303860
GCCAGGGCGGCGATTCAGGGGTGCCAGGGAGAATAAATGGGAAGAAGAGCGAGCAGATGGGGGGA
TGATTTATCAATAACACACACGGAAACCTAGACACCACTTGACTCTTTGACCTGCCATACCACAC
CTTACCCTACACCCTACAGGGAACAAAAGGGGCGCGCAGCGGGGAGCTTACCACTGGTACTTTTT
GAACAGAGCAAGAGAAAAGCGCACCAACAACCAAGCATAAGTCTGTGCTGTCGGTACTCTGACAC
CAGGAAGAGCAAGAGTCTCGCAAGAAATAAGACTTTCTGCCCTATATCCAAAACCATCTCCCGGT
GAATCAAAAGGGAAAACCCATTCTTTCATAGGCTAGGTCCCTGTAATTAACTTTTGTGAGTTCTT
CCAGTTAATGAGATGAGAAAGCTGTGTCCTAGAAGCAAATGACTCAACAAACTACTCCACATGCA
CTTGTACTTTTGAACAAGCTAGTAAGGAAGAGCAGTTCGAGCAAG
Right flanking sequence: Indices 303899 -- 304398
GTTCGAGCAACTGGGAGGAGCAGTTCGAGCAAGAAGCAGCGTATAATGGTGGACGAAGCTAAGCG
GAAGTACTATTGGTAAGGCAATCAAAGAAATACCTCTCTCCGAGCCAAGCGAGGCTATGCGAAGC
TAGGCAAGCAAAGCGGATCGAATCAGAGAGGAAGGTTTTGGGGAAGTATGTGTTATTGATCAAAG
GTAGGTTTGCGAGGGTAGGTAGGTTGGTAGCTAAGCCAATGAGACTTGCTCCTAGGCTAGGAGCC
GATGCCTCTCAGCCAATCGGTCTGATTGATGCTTAGCCTTTGTTCTTTCTTGTAAAGTCAAGAGC
TCTGCTTTGATAGATTCTAGTGGAAAGGAGGCAGTTCTCTTTGTAGTCTCTCCGAGAGTGGGTTG
TTTGCTCCTTCTCTGAGTTCTAGTTCTTGTTTGGTGCCGCACTCTAAATGCGAGTTCAGACTTCC
TCTGCTACCAAGTATCTACTTCTCTCTTTCTCTCTGCAGAATGCC
Found at i:303910 original size:22 final size:22
Alignment explanation
Indices: 303882--303930 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 22
303872 GTGATCAACA
*
303882 AGCAACTGGG-GTGATCAGTTCG
1 AGCAACTGGGAG-GAGCAGTTCG
303904 AGCAACTGGGAGGAGCAGTTCG
1 AGCAACTGGGAGGAGCAGTTCG
303926 AGCAA
1 AGCAA
303931 GAAGCAGCGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 24 0.96
23 1 0.04
ACGTcount: A:0.29, C:0.18, G:0.37, T:0.16
Consensus pattern (22 bp):
AGCAACTGGGAGGAGCAGTTCG
Left flanking sequence: Indices 303382 -- 303881
TGCCAGGGAGAATAAATGGGAAGAAGAGCGAGCAGATGGGGGGATGATTTATCAATAACACACAC
GGAAACCTAGACACCACTTGACTCTTTGACCTGCCATACCACACCTTACCCTACACCCTACAGGG
AACAAAAGGGGCGCGCAGCGGGGAGCTTACCACTGGTACTTTTTGAACAGAGCAAGAGAAAAGCG
CACCAACAACCAAGCATAAGTCTGTGCTGTCGGTACTCTGACACCAGGAAGAGCAAGAGTCTCGC
AAGAAATAAGACTTTCTGCCCTATATCCAAAACCATCTCCCGGTGAATCAAAAGGGAAAACCCAT
TCTTTCATAGGCTAGGTCCCTGTAATTAACTTTTGTGAGTTCTTCCAGTTAATGAGATGAGAAAG
CTGTGTCCTAGAAGCAAATGACTCAACAAACTACTCCACATGCACTTGTACTTTTGAACAAGCTA
GTAAGGAAGAGCAGTTCGAGCAAGAAGCAACCGGGGTGATCAACA
Right flanking sequence: Indices 303931 -- 304430
GAAGCAGCGTATAATGGTGGACGAAGCTAAGCGGAAGTACTATTGGTAAGGCAATCAAAGAAATA
CCTCTCTCCGAGCCAAGCGAGGCTATGCGAAGCTAGGCAAGCAAAGCGGATCGAATCAGAGAGGA
AGGTTTTGGGGAAGTATGTGTTATTGATCAAAGGTAGGTTTGCGAGGGTAGGTAGGTTGGTAGCT
AAGCCAATGAGACTTGCTCCTAGGCTAGGAGCCGATGCCTCTCAGCCAATCGGTCTGATTGATGC
TTAGCCTTTGTTCTTTCTTGTAAAGTCAAGAGCTCTGCTTTGATAGATTCTAGTGGAAAGGAGGC
AGTTCTCTTTGTAGTCTCTCCGAGAGTGGGTTGTTTGCTCCTTCTCTGAGTTCTAGTTCTTGTTT
GGTGCCGCACTCTAAATGCGAGTTCAGACTTCCTCTGCTACCAAGTATCTACTTCTCTCTTTCTC
TCTGCAGAATGCCCTTGGGGCTTTCATAGATTGTCTCAACTACCC
Found at i:304692 original size:39 final size:39
Alignment explanation
Indices: 304638--304715 Score: 111
Period size: 39 Copynumber: 2.0 Consensus size: 39
304628 GCAAACCAAC
* *
304638 CAATACTAGCTCTTCTTCCCAACCAATACTAATTCTTAT
1 CAATACTAGATCTTCTTCACAACCAATACTAATTCTTAT
* * *
304677 CAATACTATATCTTCTTCATAACCAATACTACTTCTTAT
1 CAATACTAGATCTTCTTCACAACCAATACTAATTCTTAT
304716 TTTTCGGAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.32, C:0.28, G:0.01, T:0.38
Consensus pattern (39 bp):
CAATACTAGATCTTCTTCACAACCAATACTAATTCTTAT
Left flanking sequence: Indices 304138 -- 304637
CTTGCTCCTAGGCTAGGAGCCGATGCCTCTCAGCCAATCGGTCTGATTGATGCTTAGCCTTTGTT
CTTTCTTGTAAAGTCAAGAGCTCTGCTTTGATAGATTCTAGTGGAAAGGAGGCAGTTCTCTTTGT
AGTCTCTCCGAGAGTGGGTTGTTTGCTCCTTCTCTGAGTTCTAGTTCTTGTTTGGTGCCGCACTC
TAAATGCGAGTTCAGACTTCCTCTGCTACCAAGTATCTACTTCTCTCTTTCTCTCTGCAGAATGC
CCTTGGGGCTTTCATAGATTGTCTCAACTACCCACTCCCCGATGTGAATCTGGTCTTGTTACTGA
GCTGGGGAATCTAGATATATCTCATCTCACCCTTACCAGCGTAAGGTAAGTTCAGTCCCCGATTT
ATTGGTAAGCAAAATCCCTCCTCTATGATCGACTCAATCCGGCTTAGTTAGGTCGGGGTGCTCCT
CTTGATTGAGTTATAGCCAAGGTTCCTCGCACCAGGCAAACCAAC
Right flanking sequence: Indices 304716 -- 305215
TTTTCGGAAAGAGTCTTTGGAGATTCTACTTGCTGCGATAGAAAATGTAGCGGCGCAATTGAGCC
ATTTGCAATCAATCCGAAGGTTAGGCTAGCAAGGTGGCGTTAGCAAAGGCAATTGACTCTTTTCA
CTTCACTCTAGCCAGTCGTCTCTTTCTTATTCTTCTTATTATACGAAGGGGGTGGCATGTGAAAC
CAACAATCCCATCTTGTGGAATAAGAGCTGTTTTCTTGCGGAAATAGGTTTTGTTTTGAGGGATG
GACTGATTTCACTAATGAAAGGAACCTACGAAGAAAAACGAATCGCTCTCGTCAAAGGGGACGTC
TACTTACTTCTTATTTGAAGGCGGAGCTAGAACGTTCTTAGTGCCTCTTCTTATGTACAGTTTCC
CTCAAATCTCTATATATAGTTCTGGTAATTGGTGTCGTATTCTATTATTTCCTGTTCTTTCAATG
ATTTTTGAGTATTCTTTCTATATCTTGACTAAGGAGCCATATATG
Found at i:305375 original size:21 final size:21
Alignment explanation
Indices: 305311--305375 Score: 103
Period size: 21 Copynumber: 3.1 Consensus size: 21
305301 GTGTCGATGA
*
305311 TGGTGGTGGCGATGGTAGTGG
1 TGGTGCTGGCGATGGTAGTGG
* *
305332 TAGCGCTGGCGATGGTAGTGG
1 TGGTGCTGGCGATGGTAGTGG
305353 TGGTGCTGGCGATGGTAGTGG
1 TGGTGCTGGCGATGGTAGTGG
305374 TG
1 TG
305376 TAAGTAGTTC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 39 1.00
ACGTcount: A:0.11, C:0.09, G:0.52, T:0.28
Consensus pattern (21 bp):
TGGTGCTGGCGATGGTAGTGG
Left flanking sequence: Indices 304811 -- 305310
AAGGTGGCGTTAGCAAAGGCAATTGACTCTTTTCACTTCACTCTAGCCAGTCGTCTCTTTCTTAT
TCTTCTTATTATACGAAGGGGGTGGCATGTGAAACCAACAATCCCATCTTGTGGAATAAGAGCTG
TTTTCTTGCGGAAATAGGTTTTGTTTTGAGGGATGGACTGATTTCACTAATGAAAGGAACCTACG
AAGAAAAACGAATCGCTCTCGTCAAAGGGGACGTCTACTTACTTCTTATTTGAAGGCGGAGCTAG
AACGTTCTTAGTGCCTCTTCTTATGTACAGTTTCCCTCAAATCTCTATATATAGTTCTGGTAATT
GGTGTCGTATTCTATTATTTCCTGTTCTTTCAATGATTTTTGAGTATTCTTTCTATATCTTGACT
AAGGAGCCATATATGCGTCCCTGCGTTGGGTTGGTGGTAACTGCTGGTTCCATTCCCGCGAAAGT
GTCGACTACATCCTTCTCCCCTGAGAGTTCTGGTGGTGTCGATGA
Right flanking sequence: Indices 305376 -- 305875
TAAGTAGTTCGGAATCTGATCTTGCCGAAGCATACGATAGTAGTTCGGAATCGGAAGATAGTAGT
AGTTTGGAATCGGATTTTGACGAAGTTAGTGAATTGCCACCTCGTGAGGAGGCTTTTAACCAGGA
CCAAGGTGAGAGTAGGGTAATAATCGAAACTTTTTGGACTGAGTTTTGTAATGATTTGGAAAAAT
TGGAAGCTCCGATTCAAAGTACATCTCATGAGTATCAATCAGAAGTAATCAAATTGTTGTTAGAT
AATAAGGGTAAGAAGAGGAATTTGGTGAAATTGCAACGAGAAGTTGAGAGTTTGACTTTGGAGTT
CAAGGAAGGAGATATATTCCGTACCGCTCCCAATTTGATCAAATTATTTATAGGGGATGATATCC
AAACAGCCAAAGAATATTTAAAGGGGGCTGTGTCTCCAAAGCATTTACCCTTATTGAATTCGCTT
GGGTGTTATACGCTTGAGGCGTTAATGATCCATGTGCTGGCCCAG
Found at i:314546 original size:21 final size:21
Alignment explanation
Indices: 314522--314568 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
314512 GTCCAAATAT
*
314522 CAAAATACAGCCAATAAAGTA
1 CAAAATACACCCAATAAAGTA
*
314543 CAAAGTACACCCAATAAAGTA
1 CAAAATACACCCAATAAAGTA
314564 CAAAA
1 CAAAA
314569 GAAAGACTCT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.57, C:0.21, G:0.09, T:0.13
Consensus pattern (21 bp):
CAAAATACACCCAATAAAGTA
Left flanking sequence: Indices 314022 -- 314521
AATTGAGTCTCATGATATTATTTGGAGTGAAGTAGGGTGGAAAGAGGACTAGTTATTGCTTTCAC
GTCAGAATCCTTTTTGATTGTCAGTGGAAAGCAGATTACAGAGTCCAAAAGAGTGATCAAGTCAA
TTCTATATAGTATGAGGAGACACCTCTTATTAGACCTGAGTGAGATATGCCATACATCTCGACGT
CAAGCCAAGTCCCATCTGCCCAATGTTCGCATCCCCCTCGGCAATGGAAGATTTTGGTCATTCAT
CACAAGTGGATCAAGCCCGTCCTGCCTGACTTTTGCCCTCTATTATGTGGTCTTCCATTATTCAG
CTTGCCGGCAAAGAGATAATCCAAATTCTCAAAGAGTCATCAAAGAATATCTACGATAGAAATTG
AACATACTCACCCCGTGACATACAGGATTGGTTCTCCGTCACAAACCAGGCCGAGTATTACCAAT
CAAAAAGTCCAAATACACAGCCACACTCCTTCAAAGTCCAAATAT
Right flanking sequence: Indices 314569 -- 315068
GAAAGACTCTCCCTTCTCATCCCCATCTCAGTCCCTCCTCATAGAATATTACCACTACTTCATAG
TTCAGCCATAGTCCAAATAAGTACAAACCAATGTTTGTTCACCTTGCCTTTGTGTTCCAAAGCTT
CCAGCTTAGACCTGGCGCTTTTTCTGGATGGATTGCCACTCACTGCCTGATAGCTGGCTTGGCCC
ATGAGACCTATTGTCTTATTGTCCTGGCTCACTTCACTACTTTGGAGGTTTCCTGTCAGGTTCGC
AAACGCTCTAAGCCAGAAGACCCAATTCTAGTTGATGTGAGCACTTCCCCAGAGGCAGAGTCTGA
GTCTAAAAAAGGGTGGGAGCATAAAAGAGAAGTGAGTCAATTGCGTGTGGCCGGTAAACTATTTC
GTCAAAACAAAAGACTCGATCGGCATAAAAGCATGTACGGTTCCTAACCACAAATGGTCTAATCA
ACAGACTGAATCGAGTGATAGGCCGAAAAGTTGCACAATTTCGTA
Found at i:337894 original size:36 final size:36
Alignment explanation
Indices: 337821--337895 Score: 87
Period size: 36 Copynumber: 2.1 Consensus size: 36
337811 CCCAATGCCT
* * * *
337821 GATAAGGTGGAGGTTGTAGTCAAGACTCATTCTAAC
1 GATAAGCTGGAAGTTGTAGTCAAGACTCAGTCAAAC
* * *
337857 GATAAGCTGGAAGTTGTAGTTAATAGTCAGTCAAAC
1 GATAAGCTGGAAGTTGTAGTCAAGACTCAGTCAAAC
337893 GAT
1 GAT
337896 GGGGTGAAGC
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.33, C:0.12, G:0.27, T:0.28
Consensus pattern (36 bp):
GATAAGCTGGAAGTTGTAGTCAAGACTCAGTCAAAC
Left flanking sequence: Indices 337321 -- 337820
TAAGCCACTACCTAAAAAGGAAGAAAGTATGGCTTTCATTATTAATGAGTTCTGGGAGAATCTCT
ATGCCAAGTTGTCGGATATTGAGAAATCCAGGAACAATACTATGGCTAATAGGTATAAACATGAT
ATTATCCATATGTTGTGGCATATGAAAAGTAGTAGGGATCAAACTAATTGTGAGGGTTTACAAAT
GAATATATAAAATCAGTCAATGTCTTTCCAAGAGGAAAACATCTTGAAAGGCTGTCATGACTTGG
ATATTCATTAATAAAGACTTGCCTAGCGCCAGGGAATATCTCAAGACTCGCCTCCCAGATGAGTA
TTTACCTCTGCTTAATAACCTTGGGAGCTATACGCTTGAGGCACTAATGATACATGTCCTCTCGT
TGGTGTTCCACTGTTCCCCTCACTACCCCTCCGTGAAGGTCTCTTCATTGTTGGACCAGCTGAAC
TCGGCTGTACGAGAACAAGCAAGATTGAAGAGTGCCCCAATGCCT
Right flanking sequence: Indices 337896 -- 338395
GGGGTGAAGCCTCAAAAGACTAAGTAAAAAACCACCGGTGCTCAGTCAGTCCAAAGGATGCGCCT
ATTCAAAAGACCAAAAGTAAAGTGAGTCGGGGCTCGGAACATGGACTGCCCTCCGCAAGTGTAGG
AAAGCAGTAGCTTCGGAAGTTTATTAGTAGCGAGCTGGCTCCCTTCTTCTTTTCCGGAAGTGGCC
TACCTCCGGGCGCTTCCTTCCTGGTCGGAACATTAGACCTTCCTTGGTCGGAAGAACGTCTTTCA
CCCAATCGTCGGAAGAAGGTCTTTGACCTAGGGGCTTCCTCTGATGAGTGGTCGCTTCCTTTTTC
TGGGTCGGGACCCTCCCTTGCTTTGGGTCAACTCTAGTATTGGTGGGTACGCCCAAGCTATTATA
TCAAAAGAAATAAGTAGGCTTGCTTTTCAGGACTCGAGGATATGAACCAGAACCCGATCCTGGAG
TTGGAAGTTTGCCTATTTCACTAGGCCGACAGTCATGGAGTGAAG
Found at i:351018 original size:31 final size:31
Alignment explanation
Indices: 350983--351042 Score: 104
Period size: 31 Copynumber: 1.9 Consensus size: 31
350973 GACAGCCACT
350983 ACCAGA-CGCACTTGACTTGCTACCTATCTTA
1 ACCAGAGC-CACTTGACTTGCTACCTATCTTA
351014 ACCAGAGCCACTTGACTTGCTACCTATCT
1 ACCAGAGCCACTTGACTTGCTACCTATCT
351043 ATCCCAGCTA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
31 27 0.96
32 1 0.04
ACGTcount: A:0.25, C:0.33, G:0.13, T:0.28
Consensus pattern (31 bp):
ACCAGAGCCACTTGACTTGCTACCTATCTTA
Left flanking sequence: Indices 350483 -- 350982
TTACCTTTTGGGAGGCCTACGCCCCATAGAAACTGTCTACCTGAGACTGCCCCTTGGCCCGTAGG
TGCTGACACAAGGTGAGAATTTATAGCTCTTCCAGAGTGGTATCTCACTGATGGCTTGGACCCCT
CAACCTTATACGTGGGGGCCTTCTTCGCCTTCCACCTAAGCTGCGTAGGAAAAGGCCCAAAGCCA
ATCCCAGGGAACAGTCAAGCTTCATAGGGTCTTTCTGTCCAGGTTCAGGCAGTCCGCATCTTCAC
AGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCAG
GTCGGAACTTACCCGACAATGAATTTCGCTACCTTAGGGAAGTGAACTTAACCACATCAAGGGGG
ACGACAGTGACACTTGTGCTTTTCACCTTCTTTCTTCTTCTTCCACCCTCTTTCTTACACTTGAC
TTCTTATAAAGACTTCTACTTTACTTACTTCTCATGACAGCCACT
Right flanking sequence: Indices 351043 -- 351542
ATCCCAGCTAGCTGTATTCCGTACAAGCCCTACTTTACCTACATATTGCGTATCTTTCTTGACAT
TGCATATAGATGAAGACAATTCGATATTGGAAGATGAAGAGATAGTCCGAGATACTCTTCCCAAA
TATAGAAACTGTTCTTTTGTTAAAGGAGACATTGACTGGGATCGAACCAAAGAAATACAAGGGCA
AGACTGTTCTTCATTCAGCAATTGATTTGGCTTAAGGAACCTTGGAGAGACACTTAGTTTGATGA
GTTCTTTCTAAGACTTTCCTACTTCATGAAGCACTTTGTTCGGTCCTGGAGCTCGTAACCGTGCC
ACCTCGCTTTCTATGAGGTCTAGGCGCCCGGCCCAAGGGGGTCTTTCCTCCTTCCTTGGGAAGCA
AAAAAAGGCCTATCTTACCCTTCGTACGAAAACATTGTAGCTCGCTCCTGTCGAACCGATGCAAA
AAGAGGTTCAATAGAATAGGGCATCCTTTCGGGAGTGGAGATTGG
Found at i:366286 original size:20 final size:20
Alignment explanation
Indices: 366257--366315 Score: 91
Period size: 20 Copynumber: 3.0 Consensus size: 20
366247 CTTCTTATTC
366257 TAGCTGTAGCCGTATTCTTA
1 TAGCTGTAGCCGTATTCTTA
* * *
366277 TAGCTCTAGCCCTATTCTTG
1 TAGCTGTAGCCGTATTCTTA
366297 TAGCTGTAGCCGTATTCTT
1 TAGCTGTAGCCGTATTCTT
366316 TCTATAGTGG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.17, C:0.24, G:0.19, T:0.41
Consensus pattern (20 bp):
TAGCTGTAGCCGTATTCTTA
Left flanking sequence: Indices 365757 -- 366256
TGAACTTGACACTGATCGGCAGCACTTAAGAAGAAGTTGTGAAAGGCTGGACCTGAACGATGACA
ATTCACCATACTAAGAACTTGCAAGAGCGGGATCCGGGGCAATCTAGTTTCGTTGGAGGAAAGAT
AGTTCAACATTTTCTTTCCACTCCTCATATTTCTGAGTTGAACTTTGAATCAGACGGAAACGATT
GACTGAGGTTACAAAAGAGAAAGTCTAGTCCGGTCTAATGCTTCCATGTGAAGAACCCCCCATTG
GTGTGCCGATGCTTGCTAAGGTAGGTGAGGAGATTGATATTGATCGGATCTCAAGTCAATTAGTA
AGATTGGATAGTCTACTTCATAGTAGCTAGAAGTTGGTAAGATTGGATAGTCCGTGTTGGTATAG
AAGTCATCATTATAGGTCGAGTGTGTATTTCAAGACGGAAGCGATCAACTACTAGCAGGGACAGG
CTTCGGTTACCTAGGCTACTCTCGCCCTTTTCTCTCTTCTTATTC
Right flanking sequence: Indices 366316 -- 366815
TCTATAGTGGGAGACGAAGTACCAGTCGATTAGAAGAATTCCTTCTCCTCGGATTAATTCCTAAT
CTCTGGGGTGAATTAGATATATTATTCAACAATATGTGGGCTGAGCATGTCATTAGTGCTCAGAA
CCAAATCTTCAATACTAGTGGTATAATCAGGAATGCTAAATATTCAATAACCTACTTTTCCACCG
TGGTACTCCGCGCAGACCAAAAGAAACCTATCAATTGGTCCCATGGGATTGGTGGAAACTAATGG
GATGTACATAAGAGATTTCACATCCGTAACCAAGTCTTTCATTCCCCCCATGCTTTTTTTCTGTT
CTGGCGCACTTGTTTTCCCGTTTACGCGTTTTGAGATAGGACTGAGAGGCTGTCATTCCTCCTTT
TCATCCATTTACTGCTTCTCATCCATTTTCTGCTTCGCACATACCCGCTTCCACTTGCTTCGGAT
TCCTTCATTCCAGGATTTCTTCCACTTGCTTCGGATTCCTTAACG
Found at i:366729 original size:18 final size:18
Alignment explanation
Indices: 366706--366741 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
366696 TTCCTCCTTT
366706 TCATCCATTTACTGCTTC
1 TCATCCATTTACTGCTTC
*
366724 TCATCCATTTTCTGCTTC
1 TCATCCATTTACTGCTTC
366742 GCACATACCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.14, C:0.33, G:0.06, T:0.47
Consensus pattern (18 bp):
TCATCCATTTACTGCTTC
Left flanking sequence: Indices 366206 -- 366705
GACAGGCTTCGGTTACCTAGGCTACTCTCGCCCTTTTCTCTCTTCTTATTCTAGCTGTAGCCGTA
TTCTTATAGCTCTAGCCCTATTCTTGTAGCTGTAGCCGTATTCTTTCTATAGTGGGAGACGAAGT
ACCAGTCGATTAGAAGAATTCCTTCTCCTCGGATTAATTCCTAATCTCTGGGGTGAATTAGATAT
ATTATTCAACAATATGTGGGCTGAGCATGTCATTAGTGCTCAGAACCAAATCTTCAATACTAGTG
GTATAATCAGGAATGCTAAATATTCAATAACCTACTTTTCCACCGTGGTACTCCGCGCAGACCAA
AAGAAACCTATCAATTGGTCCCATGGGATTGGTGGAAACTAATGGGATGTACATAAGAGATTTCA
CATCCGTAACCAAGTCTTTCATTCCCCCCATGCTTTTTTTCTGTTCTGGCGCACTTGTTTTCCCG
TTTACGCGTTTTGAGATAGGACTGAGAGGCTGTCATTCCTCCTTT
Right flanking sequence: Indices 366742 -- 367241
GCACATACCCGCTTCCACTTGCTTCGGATTCCTTCATTCCAGGATTTCTTCCACTTGCTTCGGAT
TCCTTAACGTTGCGACTCACATTTCTCTTGCTATTGAGGCTAGGCTGCTCTAGATTCGTCTGTCT
TCAGAAAAATGAAGCTAGTGTCAAGACTTTCTATCGAGGTGGGTCAAGCAGTTGGCTATTGAAGT
AGTTGATCCGACGTGGAAGAACAATTTATGTGAAGAAAAAGGGCCTTGTCTGGTAGGTCACTTGA
TGCTCGGAACGGTAGTAGTGAGTCGGGCTTGTGGAGAAGATTCCGGCTAGCTCGTTCATTCCTTT
TCTTCGCTGGCTTACTTACGGTTGCCAACTCTCGGACTTCCGGCTGTCAATTCCTTGTGTTCAAA
AGCACCCATCAAATCTTCAAAAATGAACAAAAAACGAAGAAGGAAAAAGAACAGAAAGAAGGCAT
AACCAGAAGGAAGGGTACTACTTGCGACAGGAGAGAGAGTCATCA
Found at i:377645 original size:18 final size:18
Alignment explanation
Indices: 377622--377656 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
377612 CTTTCTTTAC
377622 CCCCGCTGCGCGCCCCTG
1 CCCCGCTGCGCGCCCCTG
377640 CCCCGCTGCGCGCCCCT
1 CCCCGCTGCGCGCCCCT
377657 CACTCACCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.00, C:0.63, G:0.26, T:0.11
Consensus pattern (18 bp):
CCCCGCTGCGCGCCCCTG
Left flanking sequence: Indices 377122 -- 377621
AATAGCTGGTGTATTATTCAGTAACTCCCTTGCCTTGTACTAGCTATAGAGGAGATTCGTTTTGA
CGGAAGGAACATCAGCACTTCCTCACTCCAGAAAAGGTCCACATTGAACATTTGTGAATCCATGA
TTCCACCAAGAAAAGGTAGTCAAGAGCAGAATGAAGAAGGATCTAACCTGCGCATTGTTCATGAT
GTAAAGCTGAGATGGATGGACGCAGCTCTAAGCATCACTAATTGGCAAATTCCGTGAATTCAGAA
TGTGATTTGGGAGATCAAGATCTCGACGTCTCTGAGGAAATCGAATATCGAGGACCAAATAGCAA
GTTGAAAAGTGAAATCAATTGAAATGACAATAGCCATAAAGAGAACCAAGGATGTCATCCCTCAC
TCTCATTTGGCGAGGAGAAAGATGAAAGAAGTTCGCTGACAGAAAGACAAGAGTCCTCCTTTCAA
TAGGTATAGGTCGCGTTTTCACCAATGAAATCCATCTTTCTTTAC
Right flanking sequence: Indices 377657 -- 378156
CACTCACCTTTCTCCCAAGCAAGTTCACAGAGGTGAAAGATCAGTTCTCATAGGCAGACATCTTT
GACCCGTTCAACAGAGAGAGCAGAGAGAGGAAGACAAGCATCGCAGTTAGAAGTAGTACCTGTTG
TTGGTGTGAATGTCAGTAGGACTGAATGTCAGTACTTTCCCCAGTGGTAATCAATCAGTGGTGCT
AGAGCAAGTACTAGTAGTAGTCAAGAAGAGGAGATGCTCCCTGAGGCTGACAGTAAACCATCAAA
CTCAAGGTGGTAATGATTTCTTGGTGGCTGGCTTGCTTATATTCAGAAATGCATGGGACTTTCTT
TTGAATCAATTCCAAGGTTAGGGCAACCAAGTATTGAAAGGATAATACTACCAAGTCGGGAAATT
CCACATCTTCTGCTTCTGAGAAAACCAAGTGAAGGGCAGCTTTTTGAGTCTGATGATGTCAGGTG
ATCGTACTTCTTTCGTTTGTTGGAGAAATGCTTCATCACCCGGCT
Found at i:509446 original size:71 final size:71
Alignment explanation
Indices: 509300--509436 Score: 256
Period size: 71 Copynumber: 1.9 Consensus size: 71
509290 TGACTTTGCC
*
509300 CGGTATATGAGATCAACTTTTGTCCAATTACATTGACCGTGCCCTAGAGAAAAGGCAATCAGTGA
1 CGGTATATGAGATCAACTTTTGTCCAATTACATCGACCGTGCCCTAGAGAAAAGGCAATCAGTGA
509365 ATGTCT
66 ATGTCT
*
509371 CGGTATATGAGATCAACTTTTGTCCAATTACATCGACCGTGCCCTAGAGAAAAGGGAATCAGTGA
1 CGGTATATGAGATCAACTTTTGTCCAATTACATCGACCGTGCCCTAGAGAAAAGGCAATCAGTGA
509436 A
66 A
509437 GTTGTCGGTA
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 64 1.00
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.26
Consensus pattern (71 bp):
CGGTATATGAGATCAACTTTTGTCCAATTACATCGACCGTGCCCTAGAGAAAAGGCAATCAGTGA
ATGTCT
Left flanking sequence: Indices 508800 -- 509299
ACCACACGAACGGGGAATATACTTAGACAAGTTCGCACTACATCAGTCTCACTCAGCAAGGCTGC
CAGCAAGGAGGAGCTGCGGAGCGGGTTTTGGTCCCCCCAAAACGGTGGGGTTCACAACTGGAACT
GGCTATGGTTCTCCAATCAGAAGGTAGGCTGTGGACCTAGGAACTGAATACGCATCTCTAACTGA
ACTGGCTATAGATCTCTAACGCCTTTTGAAAGAAAGTGAATAAACATTGACTTCCGCTATCACGC
CTATGCTTCCCAAGTGGGCTTTCATAAGGTGCGACGTATACTGGCAATCAATGGGAGGTGCTTTG
TTGGGCTTTCATAGTGAATGAGAATCAAAATACATAGATAACATCAAATCAAACTCCAATAAGAC
TGCAGTACTGCTGCTGCCAAAGGGTGCTTCACTTCTCAGGTTGGGCGGATCAGATTGGATGACAT
CAGTCAACCGGTTAGCGAAGGAAAAGGGCTTTTTATGACTTTGCC
Right flanking sequence: Indices 509437 -- 509936
GTTGTCGGTAGGCAAGATCAGATTTGCTTCATTCATATATCAAGAGATGTGGGTGCAGCACCAGT
TTGATCAGATGTAGTTGCTGGGGTTCAGGTTTAAGAATGAACAAAGTCTCATCAGCGTACAAGAG
GCAGCTTCTGCAATTTAGGAAGGGAGAGGCAGGCAACATCATCGACCCATGCTGAGGAAAGTAGA
GGGCCAGCTTACCATCCACATACGCACGAATGAAGAGGCCATATAACATGCAGTCGTGATACTCC
TCGGCTTTCATCGTAATCTCGTTCATCACCTCCATTAGAGTGTCCACGTTGGCCACAGCCTTCCC
TTTTCGATCTAGCAAAGAAAGCGCGTGCTCGGTCCACTTGACTCCCATCCGGTGTAATCATTCGA
TAGCCAATATTCCATTTCCCAGACTAAACACCGGTTCCATAAACGTATTTCATGAGCAGCTTCAT
CACAGCAAACTGGATCGGGGTAGAGGGGCGCGCAGCGGGGGTGTC
Found at i:509455 original size:71 final size:71
Alignment explanation
Indices: 509309--509456 Score: 217
Period size: 71 Copynumber: 2.1 Consensus size: 71
509299 CCGGTATATG
*
509309 AGATCAACTTTTGTCCAATTACATTGACCGTGCCCTAGAGAAAAGGCAATCAGTGAATGTCTCGG
1 AGATCAACTTTTGTCCAATTACATCGACCGTGCCCTAGAGAAAAGGCAATCAGTGAATGTCTCGG
* **
509374 TATATG
66 TAGACA
* *
509380 AGATCAACTTTTGTCCAATTACATCGACCGTGCCCTAGAGAAAAGGGAATCAGTGAA-GTTGTCG
1 AGATCAACTTTTGTCCAATTACATCGACCGTGCCCTAGAGAAAAGGCAATCAGTGAATG-TCTCG
*
509444 GTAGGCA
65 GTAGACA
509451 AGATCA
1 AGATCA
509457 GATTTGCTTC
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
70 1 0.01
71 68 0.99
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.26
Consensus pattern (71 bp):
AGATCAACTTTTGTCCAATTACATCGACCGTGCCCTAGAGAAAAGGCAATCAGTGAATGTCTCGG
TAGACA
Left flanking sequence: Indices 508809 -- 509308
ACGGGGAATATACTTAGACAAGTTCGCACTACATCAGTCTCACTCAGCAAGGCTGCCAGCAAGGA
GGAGCTGCGGAGCGGGTTTTGGTCCCCCCAAAACGGTGGGGTTCACAACTGGAACTGGCTATGGT
TCTCCAATCAGAAGGTAGGCTGTGGACCTAGGAACTGAATACGCATCTCTAACTGAACTGGCTAT
AGATCTCTAACGCCTTTTGAAAGAAAGTGAATAAACATTGACTTCCGCTATCACGCCTATGCTTC
CCAAGTGGGCTTTCATAAGGTGCGACGTATACTGGCAATCAATGGGAGGTGCTTTGTTGGGCTTT
CATAGTGAATGAGAATCAAAATACATAGATAACATCAAATCAAACTCCAATAAGACTGCAGTACT
GCTGCTGCCAAAGGGTGCTTCACTTCTCAGGTTGGGCGGATCAGATTGGATGACATCAGTCAACC
GGTTAGCGAAGGAAAAGGGCTTTTTATGACTTTGCCCGGTATATG
Right flanking sequence: Indices 509457 -- 509956
GATTTGCTTCATTCATATATCAAGAGATGTGGGTGCAGCACCAGTTTGATCAGATGTAGTTGCTG
GGGTTCAGGTTTAAGAATGAACAAAGTCTCATCAGCGTACAAGAGGCAGCTTCTGCAATTTAGGA
AGGGAGAGGCAGGCAACATCATCGACCCATGCTGAGGAAAGTAGAGGGCCAGCTTACCATCCACA
TACGCACGAATGAAGAGGCCATATAACATGCAGTCGTGATACTCCTCGGCTTTCATCGTAATCTC
GTTCATCACCTCCATTAGAGTGTCCACGTTGGCCACAGCCTTCCCTTTTCGATCTAGCAAAGAAA
GCGCGTGCTCGGTCCACTTGACTCCCATCCGGTGTAATCATTCGATAGCCAATATTCCATTTCCC
AGACTAAACACCGGTTCCATAAACGTATTTCATGAGCAGCTTCATCACAGCAAACTGGATCGGGG
TAGAGGGGCGCGCAGCGGGGGTGTCAAATACATCTCACCCAATGG
Found at i:533878 original size:19 final size:19
Alignment explanation
Indices: 533854--533891 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
533844 CTACTTATAA
533854 AGATAATGGATTGAACTAC
1 AGATAATGGATTGAACTAC
533873 AGATAATGGATTGAACTAC
1 AGATAATGGATTGAACTAC
533892 TTCTACAGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.11, G:0.21, T:0.26
Consensus pattern (19 bp):
AGATAATGGATTGAACTAC
Left flanking sequence: Indices 533354 -- 533853
GGGCCTGGGATATTGTGATAGAGGCCTTGGTTTTTGAATTGTGTGCCACGTGGGGAGTTTGAAGT
TTCCACTTGGGGATATGCGGCTAACAAATTGTGAGTGGGTGTTCTCGGTCGATGTGTCTCACGTG
TGCAATCATGTTCAGATTGTGAGTGATAACTCCCAGATTAGAACCCCCGGTTCTCGCTTGGCTGT
CTCGGCACTAGCGATTCCCTTTCGTTCACATCTGAGACTTCCCCTCATCCGATAGACCGGCCTCT
TGACTTATGATGCCTTGACCTACCAAGTAGAACCAGTCAGAATTACCAACATAGAGAAGGTTGGC
TATCACAACCCATCTCATATAGGAAAAGGTGGGTGATTACCAACATAGAGAAGAAAGAGCTCGGA
CAAGTTGGCTATACATCTAATATAGGACAAATTGATTACCAACATAGATAAGGGACAGATAGGAC
AAAGCATAATGAAGACAATAGATAAGGGCCATCTCCTACTTATAA
Right flanking sequence: Indices 533892 -- 534391
TTCTACAGATTGACCTACCATCTGGTAAATGCGCCGGAATTGACTCACCGACCTAGCATATGGGA
CCTTCCATCTCGGACTTTGGAAAGCACTTGACCTTCCATATGAGGCAGACCTTCAACAACCAAGA
AACCATACACCGCCGGCGACCAAGACTATTTAGGCGTTCATGACGACCCCGTGGGGTGCCACTTG
ATAATGCTGATATCTGTGCGATGCGCCCAAATCCAAATCCTGAGGTAGGAGTTTGTATCGATTTG
CTAGGGCTCGGTTTACCAAAAAGAAACCGAGACCGATCAAAGCGAACAAACCACCCATCCTAGGA
CAAGAAGATCAAACATATACCCACTCATAAGGTCAGGAATCAGAATACGAGTCCCAAAAGCGGTA
GACAAAATCCGGTTATTAGTTCAAATTGTGAATTTCGTGGTAAACTTCAGACTCCGATCAACCCG
GTGCAGAATATTCCTGGCGAACCGGTACATAAGATTCATAAGAGT
Found at i:542719 original size:13 final size:13
Alignment explanation
Indices: 542701--542725 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
542691 ATTGGACAAA
542701 TTTCTTCTTGTTT
1 TTTCTTCTTGTTT
542714 TTTCTTCTTGTT
1 TTTCTTCTTGTT
542726 CTTTGCCATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.16, G:0.08, T:0.76
Consensus pattern (13 bp):
TTTCTTCTTGTTT
Left flanking sequence: Indices 542201 -- 542700
CTTTCTTTTAGCAGGCGCCAGTCTTCTTCATCTGGCCGCATTGCATCAATATGGATCAAATAATC
CATTGGGGGTACATTCAGAGATGGATAAAATTTCTTTTTACCCTTATTTTTATGTCAAGGATCTA
GTAGGTTGGGTAGCTTTTGCTATCTTTTTTTCCATTTGGATTTTTTATGCTCCTAATGTTTTGGG
GCATCCCGACAATTATATACCTGCTAATCCGATGTCCACCCCGCCTCATATTGTGCCGGAATGGT
ATTTCCTACCGATCTATGCCATTCTTCGCAGTATACCTGACAAAGCGGGAGGTGTAGCCGCAATA
GCACTAGTTTTTCTATCTCTCTTGGCTTTACCTTTTTTTCCAAGTATGTATGTGCGTAGTTCAAG
TTTTCGACCCATTTACCAAGGAATATTTTGGTTGCTTTTGGCAGATTGCTTACTACTAGGTTGGA
TCGGATGTCAACCTGTAGAGGCACCTTTTGTTACTATTGGACAAA
Right flanking sequence: Indices 542726 -- 543225
CTTTGCCATAACGCCCATTTTGGGACGAGTTGGAAGAGGAATTCCTAATTCTTACACAGATGAAT
GAGCAAGATACATCCAATCCAATAAGTCACACCTTATCAGTGCCAAATTCAATCACAAAGAATTG
ACGAGTGAGTCTTACACCAAGAATTGACAAGCGGATTAGAGTATTGAAGTAATGGCTGGCAGTAG
GCAAAAGACCACTGTTATGTCTGTCTAGACCATGCATTTTGGGAAGAGTTGGGGGCATTCCTATT
TGCTAGGCCATTTCGTCTTTCAATAGAATAAGCCAGCCCTTGTTGAATGAAATCAAAAAGGCGCC
AGGTCACGGAGATTTTGCCCTTTTCTCCACCTGCTAGAAGTTGGTAGATAACGCCAGCAGGAAAG
TCAGAAAGAAAGTGCTCAGGGAAAAAAGGAATTGGCGCTTATCAAAAGAGTGATGTGTTATTCAT
TGAAGAAAAAAAAAAGGTCGAGCGCGCCGCAAGCGTTGCTCCTTT
Found at i:560213 original size:15 final size:15
Alignment explanation
Indices: 560193--560221 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
560183 GTCATTTCCG
560193 CGGTCTGTATATTTT
1 CGGTCTGTATATTTT
560208 CGGTCTGTATATTT
1 CGGTCTGTATATTT
560222 CCATTGAGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.14, G:0.21, T:0.52
Consensus pattern (15 bp):
CGGTCTGTATATTTT
Left flanking sequence: Indices 559693 -- 560192
GGTGCTGCTTCTGAAACGTGTGCTTCAACGGGCTATGAATCCGCTCCTGGCTTGGACTCTGCTTC
GAGCTTCTATGCTTTTGGTGCTACTTCTCCTTCCTTCGGTGATACAGTTTTCTTTCTAGGGACAT
GGCGTACGTGGGTGCTTTTCGAAAGGAATAGAGCGTCTGGCGGGCAAGTCGTCCGAGAATATGAC
GTCGAGTTGTTACTTTCAGTTTCTTGATTGTCTCGAGTTGAGGGGCGCGCAGCGGGGTTCTTGCG
TCAATCAGATGAAGATACTGGGGACCACCTTCCTTCTTCCAGCACAAACATCAGTCCGAATGGGG
CTTGTACTCCTCGTATACTAAGAATAAGAGGCTCGTACCCCTGTTCCTACTGGAGTCGGGCAGAG
ACAATTGAAGTTGTACTTCTCACTCCAGTACCATTAAGAGAAGAGGCCCTCCTGTATCTATGATC
TCAATGTGCCTGCTAGTCAAAAGCGCATTCGCTCGGTCATTTCCG
Right flanking sequence: Indices 560222 -- 560721
CCATTGAGTAAGAGGTGAACGCACTCGTCCTGTAGCCCTCTCTGGAATGCCGTGAGCCAGGGAAT
GTGCTTGACGCTGACACCCTTACTTCATTTAGCCATCCTTGAGTGTGCTCGGGTCAGTATACACT
GTTCAGACTGGCATTGAATTGAGATAAGGATTTCCCTTCCCGACAGCCTTGATGAGAAAAGCGAT
CTGACTTACTATTGGAAACTAGGACCACCTTTGCTTACGCTTCCCCTAGCTTTCTTCTTTGTCAG
CTGACGGACCAGTCCTGTGGATCTTTTTCTTTCTCTTTTGACGTCGAGATGCGCTTAGAACTCCT
CAGCTAGCTAAGCTTAGGAACGGAAGGCAGACACTTCCACAAATCAAAGGGCTAACAAAGGGGAA
TCCCACTCGTTAGTGTCACTATCAACACCTCTAGTGAGCATAGCAGCACGCCGAGGAAGAACTAC
CCCCGTAAATACCTTTTTCAACTGTTCTTTCCTAAGTCAGGCCAA
Found at i:577808 original size:18 final size:18
Alignment explanation
Indices: 577785--577837 Score: 90
Period size: 17 Copynumber: 3.0 Consensus size: 18
577775 TTCCAACCAA
577785 GAGAGCATCAATGAGATT
1 GAGAGCATCAATGAGATT
*
577803 GAGAGCATCAATGAGA-G
1 GAGAGCATCAATGAGATT
577820 GAGAGCATCAATGAGATT
1 GAGAGCATCAATGAGATT
577838 AATGGAGATT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
17 16 0.50
18 16 0.50
ACGTcount: A:0.40, C:0.11, G:0.30, T:0.19
Consensus pattern (18 bp):
GAGAGCATCAATGAGATT
Left flanking sequence: Indices 577285 -- 577784
TTTTGTATGATGTCCTTCCAATGTGGACTCACGTATAACATCGCGCCACCATACAAACATGGTAT
AGATAAGAAAGAAGAGACCCAAACTGAGAAGTGTTGCACCCCCTTGAAATGAGTGCATGTACATA
ACACCTCCTAGGGTGGTGGCCAAAGCTCCGAGTGACCCAGAAATAGGCCATGGACTTGGATCTAC
CAAATGATAAGAATGCCTCTGAGATACCATCATCAAACACTTTGACTTGCTTTCTTTTTCAACAG
TCCCTTCGTCCCTTCCCTCAATTGGTCAAGAAGGGGGCTTGTTTGTCTCCTTTGATGGAGATCTG
ATAGAACAAATTGGAAGGGATAGTTTATTGATTGCCGTGGGCCGAAGTGCGCCGGAGAAGACTCA
CACTTCTGATGGTTTTTGGAACCACGAGTTACGTGGTAAAGAAATAAAGAAAGAATTTCCCCGCT
GCGCGCCCCTCACTGACACTGGTTGGCTTCCCCTTTTCCAACCAA
Right flanking sequence: Indices 577838 -- 578337
AATGGAGATTCAGAGCATCATTCAAGTAAATACAGATTAAGATCGTAAAAACATAAGCTTGTAAT
ATAGCTACACCTAATTCCAGACCAGTTAATGCTAGAACTATAAATAAAGGACCAAGATCTCCTAT
GAAATAGAAAAGATTATTCATCAAGAGCATAGTCCATGCAAAGCCACTTAAAATCTTGACTAAAC
TATGACCGGCCATCATATTAGCAAATAAACGGATTCCTGAGCTTAATGCACGAAAACAATGAGAG
ATTAGCTCTAGCAGTACTAACAAAGGGGCTAACGGCAGTGGAACTCCAGCAGGTAAGAAGAAGCT
CAGAAAATGAAGACCATGCCTTTGAAATCCCACTATAGTAATCCCTATAAAAAGAGAAAACGAGA
GAGACAATGTAATGAGAAAATGACTTGTAACAGTGAAGCTAAAAGGGATCATACCCTGTATATTA
CAAAATAACAAAAAAAGAAATGTGACCGAGATGCAAGGGAAATAC
Found at i:596556 original size:17 final size:17
Alignment explanation
Indices: 596532--596573 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 17
596522 AGAAGTAAGT
596532 ACAA-GAAGGAAGCTCA
1 ACAACGAAGGAAGCTCA
*
596548 ACAACGAAGGAAGGTCA
1 ACAACGAAGGAAGCTCA
596565 ACAAC-AAGG
1 ACAACGAAGG
596574 CATCTATCCC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
16 8 0.33
17 16 0.67
ACGTcount: A:0.50, C:0.19, G:0.26, T:0.05
Consensus pattern (17 bp):
ACAACGAAGGAAGCTCA
Left flanking sequence: Indices 596032 -- 596531
ATCGGAGATATTCATCTTTTCGATGGAATGATCGAAGCAAGTTGAGTGGTATAATATGGGGCAGC
AATTTCCATTTCAAGGAAAAGTCGCTGAGAGTTTCACGCCATAGATAGATTCTAATGTACAGGTT
ATGTTGTGTACCACTGGTTGGTCATGGTACCAGACTTGACATGTTGTGGTGAACAAACAAGCATT
GGTTGGTCTTGGTATCAGACTTGACTTCTGGAACTGGATGAACAATTAAGCAACCTTTGCTAATC
AAGTACTTTTCGTTTCTTCCTTTCCGGCACTAGCGAACTCCAGTCATTATGTTTTGAGCTTCTTT
CTTCCCAGTGAGTCACGAGTACAGATGGGCAGTTGTCATAGACTTCACGAAAGCACTCTAGCTCA
ATAAGGAGAGGAGAGTAGAACCATGTGACAGTAGTATGTTTGATGACACCGTAACTCACTTAGCC
TTACAAGGAAGATTCACAACAATGCATCTATCCTCAGAAGTAAGT
Right flanking sequence: Indices 596574 -- 597073
CATCTATCCCTAGAAGTACAAGAAGGAAGGTCAACAAGCAAATCACCATTTGGAAGCTTCAAGAC
AGGCGAGTGTAGAAAGAAAGGGGCGCGCAGCGGGGAACAAACAAAAGCAAATAGCCCAGTTCACC
AGGTTCTACCATTTTGACTTGCTCTAGTTCTATCCTCAGGAATGACTTCAAAGATAACCTTGCAC
CAGAACGAGGCAGACTCATACTCTGACTTCGGTAACGCACCCACTGGAAGAGAGTACGTTCATAT
ATGCACCGCCGCCCAGAGCAAGGGAATGATTTTCATAGTCTCTTTCTTCCCTAGGCTACGGGGAG
AAACTGCAGTGACCGGCTTTTCGATTAGAAGGAAGATTCCATCCATCCAATTCAATTGATTAAGT
GGGATTTTCGAGGAAGCAAACCGAAGTTCTGACTAGGACTTTCGAGTGACGTTTGCTACGACTAC
TCCCGCCCAACCTTTCGAAGTAGCTTGGCTTGCTGGCGCATTTCA
Found at i:618171 original size:22 final size:22
Alignment explanation
Indices: 618116--618159 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
618106 ACCGATGGTT
*
618116 CGACTAGCTTCCGGGTCATAAA
1 CGACTAGCTTCTGGGTCATAAA
618138 CGACTAGCTTCTGGGTCATAAA
1 CGACTAGCTTCTGGGTCATAAA
618160 GGAGTCGCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (22 bp):
CGACTAGCTTCTGGGTCATAAA
Left flanking sequence: Indices 617616 -- 618115
GTGAGTTTGAGGGTTCTGAGATGTTGCATCCACTCAAAGGTTGAATCAGGGATAGAAGCTAGTCG
TGTCTCGGTAACTTGAATGGAGAATGGAAAGCTTGGGACTATAACTACGGTGTGAATTCAAGTGC
GTCACTAGGAAGTGGTTCTTTCTAGTGGGCAAGCAGGGAATGTAACCTGATGTGGGATCGGTACT
CCGAGGTAATGAGAGTAATGTGGACGACTGTCTGCATGAAACAGGAGTCAAACGAACAGCCTTGA
GAAGTACATGTCCCATCTCTTCCAAATGAGACTTGGTAGGCACCGGAGGAATCAACTACTAAGGT
CTCGGGAGGAGAAAGAAAACAATAAGTACAAGTATCATGGATGAGAGTTGGTAGGCAACAGTAGA
AGGCTCATCTGTCCCCTTATCGAATAATAAGAGGTACTAATAGGAGAATGGCAATAAGAGGTCCT
TCTAGCCAAGGTGTTGATCATACTTCTAGTTCTGGACCGATGGTT
Right flanking sequence: Indices 618160 -- 618659
GGAGTCGCTTCTTAGCTTCTTGCTCATAAACGAGTAGCTTCTTAGCTTCCAAGCTTCTAACACCT
TTGGGGGACTCTAAGGATCGGTAATCCAGGCTTATGACAACAACCTTTCTTTCCAAATTCACTTG
CTGAACCTAGCCAAAGTCCAGGAAGAGCTACAAAGGCTTCAAGAAACAATAGAGAATTCTCTCTA
ATCCTACCCTTCCGAATCCGATGAGACGAGGTCATACTCTTTCGATGATTTCCTTTCTAGAAGGC
ATCTCTAATAGTATCTCGAGATCCTGAGATCTCCATGTGATTCGTAGAACAGCTTTCCGAGCCAT
GACTTATGACTTCCATCTCCATTCTTAGTAAGCGGTTTCCTCTCTTAGCTTGTAGTCTTGTAAAG
GATTTCTGCTCTCTGAGCCAATGCTCTTATAGTTTCCTAGTTCTATGAGTTCGAGGTTGTATTTC
TTTGATTCCCATTGCCTGCTGCCTCTTCAATCTATTCCCCCGCTA
Found at i:618178 original size:30 final size:30
Alignment explanation
Indices: 618142--618208 Score: 98
Period size: 30 Copynumber: 2.2 Consensus size: 30
618132 CATAAACGAC
* * *
618142 TAGCTTCTGGGTCATAAAGGAGTCGCTTCT
1 TAGCTTCTGGCTCATAAACGAGTAGCTTCT
*
618172 TAGCTTCTTGCTCATAAACGAGTAGCTTCT
1 TAGCTTCTGGCTCATAAACGAGTAGCTTCT
618202 TAGCTTC
1 TAGCTTC
618209 CAAGCTTCTA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (30 bp):
TAGCTTCTGGCTCATAAACGAGTAGCTTCT
Left flanking sequence: Indices 617642 -- 618141
CATCCACTCAAAGGTTGAATCAGGGATAGAAGCTAGTCGTGTCTCGGTAACTTGAATGGAGAATG
GAAAGCTTGGGACTATAACTACGGTGTGAATTCAAGTGCGTCACTAGGAAGTGGTTCTTTCTAGT
GGGCAAGCAGGGAATGTAACCTGATGTGGGATCGGTACTCCGAGGTAATGAGAGTAATGTGGACG
ACTGTCTGCATGAAACAGGAGTCAAACGAACAGCCTTGAGAAGTACATGTCCCATCTCTTCCAAA
TGAGACTTGGTAGGCACCGGAGGAATCAACTACTAAGGTCTCGGGAGGAGAAAGAAAACAATAAG
TACAAGTATCATGGATGAGAGTTGGTAGGCAACAGTAGAAGGCTCATCTGTCCCCTTATCGAATA
ATAAGAGGTACTAATAGGAGAATGGCAATAAGAGGTCCTTCTAGCCAAGGTGTTGATCATACTTC
TAGTTCTGGACCGATGGTTCGACTAGCTTCCGGGTCATAAACGAC
Right flanking sequence: Indices 618209 -- 618708
CAAGCTTCTAACACCTTTGGGGGACTCTAAGGATCGGTAATCCAGGCTTATGACAACAACCTTTC
TTTCCAAATTCACTTGCTGAACCTAGCCAAAGTCCAGGAAGAGCTACAAAGGCTTCAAGAAACAA
TAGAGAATTCTCTCTAATCCTACCCTTCCGAATCCGATGAGACGAGGTCATACTCTTTCGATGAT
TTCCTTTCTAGAAGGCATCTCTAATAGTATCTCGAGATCCTGAGATCTCCATGTGATTCGTAGAA
CAGCTTTCCGAGCCATGACTTATGACTTCCATCTCCATTCTTAGTAAGCGGTTTCCTCTCTTAGC
TTGTAGTCTTGTAAAGGATTTCTGCTCTCTGAGCCAATGCTCTTATAGTTTCCTAGTTCTATGAG
TTCGAGGTTGTATTTCTTTGATTCCCATTGCCTGCTGCCTCTTCAATCTATTCCCCCGCTACGGG
CCCCTGCTTGCCTTGGTCCTCAGTCAAGGGGATCGGGATAACTCA
Found at i:619009 original size:14 final size:14
Alignment explanation
Indices: 618990--619016 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
618980 CTTTGTATGA
618990 GAAAAGTGAGAACT
1 GAAAAGTGAGAACT
619004 GAAAAGTGAGAAC
1 GAAAAGTGAGAAC
619017 AAACAAATGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.07, G:0.30, T:0.11
Consensus pattern (14 bp):
GAAAAGTGAGAACT
Left flanking sequence: Indices 618490 -- 618989
ATGACTTCCATCTCCATTCTTAGTAAGCGGTTTCCTCTCTTAGCTTGTAGTCTTGTAAAGGATTT
CTGCTCTCTGAGCCAATGCTCTTATAGTTTCCTAGTTCTATGAGTTCGAGGTTGTATTTCTTTGA
TTCCCATTGCCTGCTGCCTCTTCAATCTATTCCCCCGCTACGGGCCCCTGCTTGCCTTGGTCCTC
AGTCAAGGGGATCGGGATAACTCACTATCCCGCTTTGACTCTAAGTCAGAAAGACAGATACCTAG
GCGGGATCATTATGCAAACTGGTTACGGGGCCTGAAGCGGAAGCGGCTATCAAACTGTCGGGGGG
ACTGGTCCAATCACATCAACAAATCCTGATTCACCAATGTCAGGCAATGACAAAACAACTTGTCT
CTATTATCTAATGTCATTGAATGACAGATGATGATGAAGAAAGGACCCTGCCACTGTCAATAGCC
CGAGAGAATGAAAATCATCTACTTCAAAAACCTTGCTTTGTATGA
Right flanking sequence: Indices 619017 -- 619516
AAACAAATGCTGTCAAGAGTCATTCTAATACCAGGAAAAAAGGAAGGAAAAGTATACATCCAATC
CTGTGTAACTACCCAGACGTGCAGATTTATGAACAATGCGCCGATACCATGTTCCAAAAAGCACC
TGCAGTTCGCTACTTTGATTCTGAACCTTGAGAATTACACACCAATTCAAAGACGTATAATGTAT
CGAAGTATGCAGACATGTTTTGTTTAAGCACCTTATGTTAGGATTTGATGTCCCCGCTGCGCGCC
CCTCAGTCCAAAAGAGAGATGAAAGAGGCCAAGACACAAGGAGAGAAGGAAAAAAGGTACTGACT
TTCATAGCAGAGTTCTAGTAGCCATTGTCCAATGGCACCATAGAAAATCTTTCCCGATCGCTAAT
CAACTACGCTTTGTCATTTTGTCTTTATTTTTCTGTATCTCGAGGTGGTTGATCCATAGAAATCT
CTCTATCAAGCTCACCGTTATGGAAGGCTTTCTTCACGTACATCT
Found at i:626514 original size:35 final size:35
Alignment explanation
Indices: 626474--626541 Score: 109
Period size: 35 Copynumber: 1.9 Consensus size: 35
626464 GACTCCCATC
*
626474 TCACTTGGAAGGTATAGGTACTACTGGTCCTCCTT
1 TCACTTGGAAGGTATAGATACTACTGGTCCTCCTT
* *
626509 TCACTTGTAAGGTATAGATACTCCTGGTCCTCC
1 TCACTTGGAAGGTATAGATACTACTGGTCCTCC
626542 CCGGAGATGG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.34
Consensus pattern (35 bp):
TCACTTGGAAGGTATAGATACTACTGGTCCTCCTT
Left flanking sequence: Indices 625974 -- 626473
GACTAGTTCCAATAGCTGAATTCCTTTTGAAAGGTGGATCAACTCCATGATCTACTTGAATGAAG
TGATTCTTCTGTGGCATTCAGCTCAGGGTAATCCACACAAACAAGTTCCATCCTTTTTCTTCACA
AGCAGGGCTGGAGAAGCAAATGGGCTTTGACTCTCCTCAATAATTCCAGTCTGCAGCATCTCATC
TCCGCTACCAGTATCTCAAATTCATTCTTCTGGTAGTGTGGGTACCTCTCAGGTTTGACGTTAAC
AATCTGACTCTCATCCAACAAGGGAATAGCATGGTACAAAGGCCTGGCAGGAGGAATAGACTGAG
GCTCTTGGTTTGGATATTCTTGTTCCCCGCTGTGCGCCCCTCACCTGTCTTGTTGCCATAGGAAG
AGAGCTAGTGCTAGTCAAATTCCCGTATGTGATCTGGTACTTGGAGTGAATCTTGGGCCCTCCCC
GTAAATGGTAATAGGACTGGTCTTGGGACTACTTGGACTCCCATC
Right flanking sequence: Indices 626542 -- 627041
CCGGAGATGGTACTGGGACTGTCTTGGCACTGCCTTTTCCCCCCCTGAAATGGTAGTCGGATGGT
CTACTTGCTCTCACCGGAACTGGTAATCGGACAGTTGACTTGGCCTCTCCGGAACTGGTAATCGG
AAGATCTACTTGGTCTCCCCGTAAGACGCCCCCCCTCTATCCGACTGATAGCCTTGATCATATGA
CTGAGAGGTAAGGTGTCGCATTATAGGAGGGGTCATACCTCCAAAGACCACGATGCAGCCTCTTC
TGGTCCCTCTTTGAGTAGATTCTGCTAGGAAGATGAATGAAGACCGGGCTCTTTCTTGAACTTCT
GACTTAGCCAGGCTGATACTTATCGTCGAGTACTAAGCTTCTGGCCCTCCTTTGACTGTGGGGTG
AATCGGGTGAATCCTTCAAGGTCAACGTACGTAGCAGCAAGGATAGAGCCTCTTTCTTGTTATCG
CTCGGTGACTCTTTCTCCTTCTCGCTCGGTTTGATAAGTACTTCC
Found at i:626683 original size:35 final size:35
Alignment explanation
Indices: 626605--626688 Score: 104
Period size: 35 Copynumber: 2.4 Consensus size: 35
626595 TAGTCGGATG
626605 GTCTACTT-GCTCTCACCGGAACTGGTAATCGGACA
1 GTCTACTTGGCTCTCACCGGAACTGGTAATCGGA-A
*
626640 GT-TGACTTGGC-CTCTCCGGAACTGGTAATCGGAA
1 GTCT-ACTTGGCTCTCACCGGAACTGGTAATCGGAA
626674 GATCTACTTGG-TCTC
1 G-TCTACTTGGCTCTC
626689 CCCGTAAGAC
Statistics
Matches: 43, Mismatches: 1, Indels: 10
0.80 0.02 0.19
Matches are distributed among these distances:
34 3 0.07
35 37 0.86
36 3 0.07
ACGTcount: A:0.20, C:0.26, G:0.25, T:0.29
Consensus pattern (35 bp):
GTCTACTTGGCTCTCACCGGAACTGGTAATCGGAA
Left flanking sequence: Indices 626105 -- 626604
GCAGGGCTGGAGAAGCAAATGGGCTTTGACTCTCCTCAATAATTCCAGTCTGCAGCATCTCATCT
CCGCTACCAGTATCTCAAATTCATTCTTCTGGTAGTGTGGGTACCTCTCAGGTTTGACGTTAACA
ATCTGACTCTCATCCAACAAGGGAATAGCATGGTACAAAGGCCTGGCAGGAGGAATAGACTGAGG
CTCTTGGTTTGGATATTCTTGTTCCCCGCTGTGCGCCCCTCACCTGTCTTGTTGCCATAGGAAGA
GAGCTAGTGCTAGTCAAATTCCCGTATGTGATCTGGTACTTGGAGTGAATCTTGGGCCCTCCCCG
TAAATGGTAATAGGACTGGTCTTGGGACTACTTGGACTCCCATCTCACTTGGAAGGTATAGGTAC
TACTGGTCCTCCTTTCACTTGTAAGGTATAGATACTCCTGGTCCTCCCCGGAGATGGTACTGGGA
CTGTCTTGGCACTGCCTTTTCCCCCCCTGAAATGGTAGTCGGATG
Right flanking sequence: Indices 626689 -- 627188
CCCGTAAGACGCCCCCCCTCTATCCGACTGATAGCCTTGATCATATGACTGAGAGGTAAGGTGTC
GCATTATAGGAGGGGTCATACCTCCAAAGACCACGATGCAGCCTCTTCTGGTCCCTCTTTGAGTA
GATTCTGCTAGGAAGATGAATGAAGACCGGGCTCTTTCTTGAACTTCTGACTTAGCCAGGCTGAT
ACTTATCGTCGAGTACTAAGCTTCTGGCCCTCCTTTGACTGTGGGGTGAATCGGGTGAATCCTTC
AAGGTCAACGTACGTAGCAGCAAGGATAGAGCCTCTTTCTTGTTATCGCTCGGTGACTCTTTCTC
CTTCTCGCTCGGTTTGATAAGTACTTCCGCCTTCCCCCTCCCCCCCTATAACACCCCTAGCCGGA
CCTTCCAATAGGTTACTCTGGAATTCAACCAACCAGACCAATGAGATATTTGCTTTGGGATCAAG
AGACATGGCCTCCACTACTTCAAAAGAAAGAACCCCGCTGCGCGC
Done.