123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_069587
Parameters: 2 7 7 80 10 50 500
Length:  633356

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8592--8631	21	2.0	20	85	14	55	10	40	5	45	1.60
15386--15467	32	2.6	32	100	0	164	26	26	25	20	1.99
16156--16195	18	2.2	18	95	0	71	10	22	22	45	1.82
16147--16205	18	3.0	21	75	14	70	10	20	27	42	1.84
17771--17797	13	2.1	13	100	0	54	22	33	14	29	1.94
22836--22869	17	2.1	16	88	5	50	5	47	14	32	1.69
26518--26548	15	2.1	15	93	0	53	9	22	6	61	1.50
43134--43177	22	2.0	22	82	8	54	20	29	11	38	1.87
57156--57231	36	2.1	36	82	4	91	39	9	26	25	1.85
76582--76643	28	2.2	28	91	0	97	16	25	24	33	1.95
85279--85359	34	2.4	34	87	0	108	30	20	23	24	1.99
109716--109762	23	2.0	23	95	0	85	12	23	21	42	1.87
165987--166060	22	3.4	22	79	7	87	16	17	36	29	1.92
166001--166070	22	3.2	22	78	8	79	17	17	32	32	1.93
167166--167263	48	2.2	43	77	19	110	26	22	21	29	1.99
167178--167290	48	2.4	48	90	3	183	27	22	21	29	1.99
207173--207216	22	2.0	23	86	4	63	25	29	15	29	1.96
220521--220589	31	2.2	31	97	0	129	10	36	15	37	1.82
226844--226891	24	2.0	24	83	0	60	31	25	27	16	1.97
278810--278867	27	2.1	27	96	0	107	18	27	15	37	1.92
290164--290230	35	1.9	35	100	0	134	17	16	23	41	1.89
303861--303898	20	1.9	20	94	0	67	34	21	31	13	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
303882--303930	22	2.2	22	89	7	73	28	18	36	16	1.92
304638--304715	39	2.0	39	87	0	111	32	28	1	38	1.65
305311--305375	21	3.1	21	88	0	103	10	9	52	27	1.67
314522--314568	21	2.2	21	88	0	76	57	21	8	12	1.62
337821--337895	36	2.1	36	82	0	87	33	12	26	28	1.92
350983--351042	31	1.9	31	93	6	104	25	33	13	28	1.93
366257--366315	20	3.0	20	87	0	91	16	23	18	40	1.91
366706--366741	18	2.0	18	94	0	63	13	33	5	47	1.67
377622--377656	18	1.9	18	100	0	70	0	62	25	11	1.28
509300--509436	71	1.9	71	96	0	256	32	19	21	26	1.97
509309--509456	71	2.1	71	88	2	217	31	19	22	25	1.98
533854--533891	19	2.0	19	100	0	76	42	10	21	26	1.85
542701--542725	13	1.9	13	100	0	50	0	16	8	76	1.02
560193--560221	15	1.9	15	100	0	58	13	13	20	51	1.75
577785--577837	17	3.0	18	88	5	90	39	11	30	18	1.86
596532--596573	17	2.6	17	88	7	61	50	19	26	4	1.67
618116--618159	22	2.0	22	95	0	79	27	25	22	25	2.00
618142--618208	30	2.2	30	89	0	98	20	22	20	35	1.96
618990--619016	14	1.9	14	100	0	54	51	7	29	11	1.64
626474--626541	35	1.9	35	90	0	109	20	25	20	33	1.97
626605--626688	35	2.4	35	79	18	104	20	26	25	28	1.99

Tables:   1

The End!