Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_021152
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 553721
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Found at i:7751 original size:15 final size:15
Alignment explanation
Indices: 7731--7760 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7721 GAGATTTGAT
*
7731 GAATTCTGAATTAAA
1 GAATTCAGAATTAAA
7746 GAATTCAGAATTAAA
1 GAATTCAGAATTAAA
7761 TTAAAGGGCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.07, G:0.13, T:0.30
Consensus pattern (15 bp):
GAATTCAGAATTAAA
Left flanking sequence: Indices 7231 -- 7730
CCGCCTTCTCCTGCTTGCTTGATCGGAATCGATTCTATGATTGAATAGCAGAAGTGCTACTTAGT
AGTAGAAACTCGGAGAGACAGACAGAGAGGGGACTCTCTCATACCTGCTAACTCCTAGGATGATA
AGTAGGTCCCTTGTTTTTGGCAGGAATAGTTCCAGCCTTTGTTGCCCCTCGGTAGAGTGAGTCTA
CTTGCGAACTGGCAGGACGCGGAGATCGATTGATCAATATGCATCTCGAGAGTGGATGGTTGACC
GCCGCCCCCTTGTCCTGGAGGCTCTCCGGCCGGGGAGGCAAAGGGGATTGCTATCGTCACCTTTT
CTCCCGGTGTATGTGAAAAATCAAAGTGACGAACACATTTTTGTTCGGTCATAGGTTGGTCCAAA
GAACGAGAGTCGGCTTCCTTAAGTCCGTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTTGGCTGT
TAACTGACTGGTCGTAGGTTCGAATCCTACTTGGGGAGATTTGAT
Right flanking sequence: Indices 7761 -- 8260
TTAAAGGGCTCGCTTTGACCGTTAGGAGTAGGTAACCCGTTCCCTGTCTTTGTTTCTATTGCATT
CTATCTCGTCGTATCACATTCTGTTCTGCGATATTTGAGAATCACCGTCAATACCTCGGTGTAGA
TCCGGGATAATTCTTTGTTCCACAGCTCTGGGGCTATTTACAACTAGCCAATTAATAATTCTCAG
ATGATGTACTAGCAGTGCATCAAAGATGCAGTGCAGTCATCGATTCTCCCGAGAGGCCACAATTA
CCGCGAGCAAACATATTAATGACGAGGAACGCATTTTTGCTTTGCTATGCTACTAATACTTGTAT
TTGCTCTGCTATTCTGCCCAAGCCTGGCTGAGGAAGAGTTACGGGGAGTAAAACACAAATATGCT
GATTCGGGCCGGGCATACTATATTTAATGATATAATGCTTCACGATAAAGAAAAAGAAAAAAAAG
TCAGGCCATTCCATTTCGACAAAAGACCCACACCCAAGTTCCATA
Found at i:14382 original size:19 final size:19
Alignment explanation
Indices: 14358--14394 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
14348 AAGCGAGCGA
14358 AGCGAAGCGCATTAATAGG
1 AGCGAAGCGCATTAATAGG
*
14377 AGCGAAGCGTATTAATAG
1 AGCGAAGCGCATTAATAG
14395 ATTAGATTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.38, C:0.14, G:0.30, T:0.19
Consensus pattern (19 bp):
AGCGAAGCGCATTAATAGG
Left flanking sequence: Indices 13858 -- 14357
GAAAGTTGGATCTACATTGGATCTCACCTGAATCGCCCCATCTATCCTCCTGAGGAGAAGTTTGG
TTTCAAACTCCGGTTCGAACAGGAGGAGTACGCCATGCTAATGTGCCTTGGATGATCCACATCTC
CGGGTCAGGCGCTGATGAGCACATTGAACTATCCATGTGGCTGAGAGCCCTCACAGCCCAGGCAC
AACGACGCAATTCTCAGGGGCGCGCTCTACCACTGAGCTAATAGCCCTTGCGGGCCTCCCACGGG
GAGGCCTACTATGCCAAAAGCGAGAGAAAGCCCATCCCTCTCTTTCCTTTTTGCGCCCCCATGTC
GCCACACGGGAGGGGCATGGGGACGTAAAAAAGGGGATCCTATCAACTTGTTCCGACCTAGGATA
ATAAGCTCATGAGCTTGGTCTTACTTCACCGTCGAGAAACGAAAGAGGACTTCCATCTGAAAAAC
GGGAAGGCAGGTTTGAATGAGTGACTTCCCGACTGAAGCGAGCGA
Right flanking sequence: Indices 14395 -- 14894
ATTAGATTCATAATCATAGTTCATATAAATAACAAGCCTTTAGCACCTGATATAGACGAATCAGG
TGATGAAAGCCTTATTTGTAGCATCATCTAACTTATTTGTAGCATTATCTAAATAAATAGGGTTT
TTGAGCCGCCTACCCTGACCTTCCTTAACATTCCTCCTGTTACGGGTCGGCTTGGGTGTTCCATT
GAGGGTGGAGGGAAAAGACGTATATTTGCCATTGGGAACTACATTAATCAACGGCTCTTACGACC
AATCCATGATTGGCTAGCTGAGGTCTTGCGTACTATCCCTCAGGATGGTACGTTCGATCAAACTA
GGCCTCTTGATCAACTAGTTCCCAAGTAAGTAGTATATTCCTTCGACTTTCAATCTGCAACGGAC
CGTTGGCCGTTGTTATTTCTATTCGAGGTGTTCTGCTATCTGTTTGACCGCAATTTTGCGTCAGC
TGTGGTTAATTCGACCTTGGCGTACAACACATTCGAAGTTCCATT
Found at i:14496 original size:21 final size:21
Alignment explanation
Indices: 14470--14511 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
14460 TGATGAAAGC
14470 CTTATTTGTAGCATCATCTAA
1 CTTATTTGTAGCATCATCTAA
*
14491 CTTATTTGTAGCATTATCTAA
1 CTTATTTGTAGCATCATCTAA
14512 ATAAATAGGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.17, G:0.10, T:0.45
Consensus pattern (21 bp):
CTTATTTGTAGCATCATCTAA
Left flanking sequence: Indices 13970 -- 14469
TTGGATGATCCACATCTCCGGGTCAGGCGCTGATGAGCACATTGAACTATCCATGTGGCTGAGAG
CCCTCACAGCCCAGGCACAACGACGCAATTCTCAGGGGCGCGCTCTACCACTGAGCTAATAGCCC
TTGCGGGCCTCCCACGGGGAGGCCTACTATGCCAAAAGCGAGAGAAAGCCCATCCCTCTCTTTCC
TTTTTGCGCCCCCATGTCGCCACACGGGAGGGGCATGGGGACGTAAAAAAGGGGATCCTATCAAC
TTGTTCCGACCTAGGATAATAAGCTCATGAGCTTGGTCTTACTTCACCGTCGAGAAACGAAAGAG
GACTTCCATCTGAAAAACGGGAAGGCAGGTTTGAATGAGTGACTTCCCGACTGAAGCGAGCGAAG
CGAAGCGCATTAATAGGAGCGAAGCGTATTAATAGATTAGATTCATAATCATAGTTCATATAAAT
AACAAGCCTTTAGCACCTGATATAGACGAATCAGGTGATGAAAGC
Right flanking sequence: Indices 14512 -- 15011
ATAAATAGGGTTTTTGAGCCGCCTACCCTGACCTTCCTTAACATTCCTCCTGTTACGGGTCGGCT
TGGGTGTTCCATTGAGGGTGGAGGGAAAAGACGTATATTTGCCATTGGGAACTACATTAATCAAC
GGCTCTTACGACCAATCCATGATTGGCTAGCTGAGGTCTTGCGTACTATCCCTCAGGATGGTACG
TTCGATCAAACTAGGCCTCTTGATCAACTAGTTCCCAAGTAAGTAGTATATTCCTTCGACTTTCA
ATCTGCAACGGACCGTTGGCCGTTGTTATTTCTATTCGAGGTGTTCTGCTATCTGTTTGACCGCA
ATTTTGCGTCAGCTGTGGTTAATTCGACCTTGGCGTACAACACATTCGAAGTTCCATTCGTTAAG
AAAAGGTTCTCTTCAGTGTGTTTCACCACTGGTCAACCACTTGGCTACTATGCGTCTTGGCCCTT
ATTTTCGCTCACCCACCACATTTTTTGGTCCAAACTAGACTAGAA
Found at i:28118 original size:22 final size:22
Alignment explanation
Indices: 28086--28131 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
28076 TGTCGTCCAG
*
28086 CGGAGCTTAGAAGAAGGTGACT
1 CGGAGCCTAGAAGAAGGTGACT
28108 CGGAGCCTAGAAGAAGGTGACT
1 CGGAGCCTAGAAGAAGGTGACT
28130 CG
1 CG
28132 CGCAGACAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.37, T:0.15
Consensus pattern (22 bp):
CGGAGCCTAGAAGAAGGTGACT
Left flanking sequence: Indices 27586 -- 28085
CACTGTTGGCGGAAGCCAATGTCCCGGGGTCCCGGGGACTCATTCTGACTGAAACAAGGGGTGGG
TCTTTACCAACTTCAAAATCCAAAGATTTTAGGGAAGAAAAAAGAGGGGCAGGGTACTCTTCATT
CTTCATTCGAAACTAATGAATGTCGGGTCGGGGGTTTCTGCCTTGTTATCAAAAAGGGGAGGAGT
TGGGTAAAGCAAACTCCCTCCTTGGACGAGCACGGGGCTTAGTCAAGTAGAACCGGGTTGCGCTG
CTTGATGCTCCGATCGAAAACAAATCAGTGGGGCCATGCCGGTACGACAGAATATGCGTTAGAAA
GGTCAATCCCTCCCCTAAAAAAAGAAACCGGGCCGAACTTCTAAAAAGCAGCCCGCCCGCTTCCA
TAGAACAATATCGTGGCAACGTAGACCTAAGTGGTCATATTGGATCCTGGGGAACCATCACAAGT
ACGGCCGGCCTGCCTATATTTGAACGAGAATGCCGTGTCGTCCAG
Right flanking sequence: Indices 28132 -- 28631
CGCAGACAGCTGACTCCTTTTCAATAGAAAGGAATAGCCAAACCAACCCAGCTGGCTGGTCAATC
TCAGAGATCTTATCGGCCGGCAAACCGGAGACGGACGACCACGGTCCCGACCGTCACCAGCACCG
GAGGTTTACTAATCAATGAACCCCCGAAACCCACTTTCTTTTCTGACCAAGTCAACCAAGCCGGA
ACAAACCGTCATGGTCACGACATGTTGTTGATATTGATTGAGTTGGAGGGACTTTCGCTGACTGA
ATCCATCCATCAAACTAGACCCCGGTAACCTTCGTAACCAAAGCGTCACGACAGAATTCAAAGGC
TTTGGATTCTTAAGTAGTCGGGGGCAAGGAGGAGCACGTAGGAATGCCGACCACTACATAAGCCA
CTAGTAGCTGAGAGAAAGCGAGCAGCAAGCAGCAAGCAGCTTCAAAAAAGCCGTTGCGCTCCCGC
CGTCCCCCCCAGACCCCCCCGAGGCTCCCGCGCCTTCTGAAGAAG
Found at i:60328 original size:13 final size:13
Alignment explanation
Indices: 60310--60334 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60300 GAGAAGGAGC
60310 TTTGTTTGTGGTA
1 TTTGTTTGTGGTA
60323 TTTGTTTGTGGT
1 TTTGTTTGTGGT
60335 TGGTTACATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.04, C:0.00, G:0.32, T:0.64
Consensus pattern (13 bp):
TTTGTTTGTGGTA
Left flanking sequence: Indices 59810 -- 60309
TTTTGGGGGGGTGGTGGGTGGGGAAGGGCAAGCGAGCAAGCAACGGCCCAATTCACGTAAAGGGA
ACGCGAAAGCCGTTGCGCGTTATAGCACCCGTTTTCTTGCTCCCTTTGCTGGTTCTTTCGAGCCA
ACGAAGGAGGGCTATTTCTCTCTAGCCGTGAGAGCCGAGACCAGTAAAAGAGCAAGTACGCCTAG
CTCTGTTAAGCTGTGTGCTTGCGCACTTAGGTTAGCTCTTGCTATTGCTTCGGGGCAATCCCTCT
CGCCTTCTTCCATTTGGTTGGTCCCACATCGAGGGGTCAAAATTCCCAACGTGCATTGCTAGTTC
TCACTTCGCGCATCCGCGCTCCGTTCGTTCCCTACGCTTCTGCATGAGTGATCTTTCTATATAAT
GTGGATCGACTGATTCATTCGGGTCGATAGGCAAAATCGTACGTAAAGAAAGGGTTCCTTCCCTC
CCAACGAATTTCGAGTGATAGGGGAGAGCCCCTAAGAGAAGGAGC
Right flanking sequence: Indices 60335 -- 60834
TGGTTACATTGACAGGGAAGTTTCCATCCATATCAAAAGGGGAGTGGGTTCAACCTTTCCGATTG
ATCTGCCGACCCCCTTTCTGCGGAAGAGATTTAGGCTCAACAGTGGAAGTTCATCCGGTCAGGTG
CTAGGCTCAGCTCAACCCAAGTGCCCCTCCTATGGCGTTCGTGACATAGCATATTGTCTGATCTT
CGAGCAGGGGGAGGATCAAATCCGCTACACCCACCGTCCTTGGCTATTAGTTACTGAGCTCTTGC
TATAGCTCTAGGGCTAGGGCTTCTTTCTAGCTCTTGCTCGCGCATTTGGGCTCTACTTCATTCTT
TTGAAAAGAACTCCTCCCCTGGCTACTACTCGAATTCATTCCTCTCGGTAAGTGAAGCTCCCTCC
ACCCGCCGCCCTTCGGTCAACTCAAACAACAGGCCAGGAAGGACATTGTTGAACGCTCACTGAGT
GCTTCTAGGTTAAAGGGAAGCACTAGACTCACTCCACGGGAACTA
Found at i:67790 original size:39 final size:39
Alignment explanation
Indices: 67737--67815 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
67727 CAGGCTCTGT
67737 TGTTGAGGCTTCGCAAGATCTTCCTATAGGAGAGCAGCC
1 TGTTGAGGCTTCGCAAGATCTTCCTATAGGAGAGCAGCC
* *
67776 TGTTGAGGTTTCGCAGGATCTTCCTATAGGAGAGCAGCC
1 TGTTGAGGCTTCGCAAGATCTTCCTATAGGAGAGCAGCC
67815 T
1 T
67816 TCTGCTGAGA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (39 bp):
TGTTGAGGCTTCGCAAGATCTTCCTATAGGAGAGCAGCC
Left flanking sequence: Indices 67237 -- 67736
CATTGCTTTTTGAGAAGGATGTTCCAAAGATATTTTGGAACGAAGCAGTGTTAACTGCCACCTAT
CTAATCAACCGGACCATGACTCCTGTGTTGGGAAACAGATCGCCTTTTGAAGTTATCCTGGGACA
GCCACCTTCCTATTCAGATCTGCGAGTCTTTGGGTGCCTTTGCTATATACATGTACCCGACAGTC
TTCGCCATGACGCTTTCTCCCACATCCACTGCATGCGTCTTTTTTGGGGTACCCTGCAGATCAGA
AAGGGTATAAAAGTGCTATGATCTTACCACTGGAAAAGTGCATATTTATCGCCATGTCACTTTTT
ATGAGGATCTCTCTCCCTTTACCAAGGCGCCATCTAGATTGGATGACAGAATCGAGCCGGCTCCA
ATACAGGGGGAGAGTTCACTTGATGGTTTGGAGCCTATGATGACTCAGGTGGTGATACCGCATTC
TTCCGTTCTTCATCAAGCACCGATACCTCACACCACAGGCTCTGT
Right flanking sequence: Indices 67816 -- 68315
TCTGCTGAGAGAGTGGATCCACCTCAACTTAAGACGTATTTTAGGAGACCCCGACCTGTGCCAAC
AACCGTTGAGCAGCCCGTTCTCTCTCGAGTCCCCGAAGATCATCCTCTTCCTGTTTCTAGTCCTG
ATAAGGTACGTAGATCCGATCGCATTCAATTTCCTATTGATCGTTTTGTATCTTATGACTCTTTT
TCGAAAAAACACCGTGCCTTTGTCTCTACTGTTCATTCCACCAGGGAGCCCAGTTCTTTCCACGA
GGCTTCCTCCTCTGCTTGTTGGAGGCAGGCGATGAAAGAAGAGGTTCTGTCAGCTCGGCTTGGAG
TAAGTCGTGAGACCTCGACTTTTGGCTAACCTCCAGAAAGGAGTGAACACAACATGGCACTTGTT
GCATCCTTTGGTAGGTCAATTGCAGCTCTCTGGCGCGCTACGGCTGGCTCCTCCGCTTGCAGGGT
CAGTTAGCTCAACTCAGGTAGGACAGCTTCGGGTAGCCATCCATC
Found at i:83856 original size:21 final size:19
Alignment explanation
Indices: 83806--83858 Score: 61
Period size: 21 Copynumber: 2.6 Consensus size: 19
83796 TGAAAAGGAA
83806 CCAGCTGAAAAGCAGCGAG
1 CCAGCTGAAAAGCAGCGAG
*
83825 CGGAGCTTGAAAAGCGAAGCGAG
1 C-CAGC-TGAAAAGC--AGCGAG
83848 CCAGCTGAAAA
1 CCAGCTGAAAA
83859 ACGTATGCGC
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
19 1 0.04
20 3 0.11
21 14 0.50
22 3 0.11
23 7 0.25
ACGTcount: A:0.38, C:0.23, G:0.32, T:0.08
Consensus pattern (19 bp):
CCAGCTGAAAAGCAGCGAG
Left flanking sequence: Indices 83306 -- 83805
CCGGGGAAAAGCCTGCCTTATGAGTCACCACCTTAGCCGACCTATACTGCAATAACCCGATGGCG
GTTGGAACGCGGGCTAGCCGGTCGGGAGGTTCGATTCCTCCCCGATCCCTTGGAACTCGATCCAT
GTAAGGAAGCTCCTTTTCCTGGGAGAGCATACTCCAACATCGGAAATCAATTAGTTCTGATGGAA
AGATTTTTCTGAAAGTGACTGGTTCAGCTATCGGAATGGCTTTCTGTCCCCCGGATAACCTGCAT
AGAATCACCGGGTCAGAAAGCCGGAGGAGATTCGCAGAGGAGGGAGCCAAAGCCGTAGAGTACGT
CGGGGAGGGGCTCGTCCGGGATTCGGAGAAGGGAATAACAAAAGGCTTGTAGAACGTTTTATCGC
AGTAATCGCAGATGCTATAACACTGTTACCACGGGGGTGGAGAGCCGAGTCGAACATATTTCAGA
CCGTGGATGTATGGTTACATTATAGCATTGTGTGATGAAAAGGAA
Right flanking sequence: Indices 83859 -- 84358
ACGTATGCGCGCGTTTGACTAATAGGCTGAAAAGCCGTTGCTTGCTGGCTTCAAAGCTTATTAGT
CAAACGCGCTAGCGCCTGAATTGATAGTCGTTTTGAAGCGCTTCAAAGCCAGCTTCAAAACTCGA
CTTAAGGTAAAGTAATGACTAATTATTAATTACTATAATTGGAGAAGCTTAAGCTACGCTCGGAC
CTCTCTTGGGAGAGGTCCTTCTCTTCGCTACGCTTCGTAGCTCAGTACCCGCCTGCTGGCGGGGG
TACCCGCCTGTAGGCGGGGAGTCCCTAGTCGTTTGTAAAAGCTAGCATTGCACAAGCGATTGGCG
CTTGTTCAATGCTAGCGAACAAACGCTTCGCTTCACTCGAGCTTCCTACCCAGGAAGCTCTTCGT
TCGCTTCGCTCACTTTCAGCGCTTCATGTTCATTAATCAATATGAATAACAATTAATAAAAGCTT
TCATTATAAAAAACGTAGTCACGGCCTGTGCTATGTAATTTCCCA
Found at i:84123 original size:20 final size:20
Alignment explanation
Indices: 84098--84137 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
84088 TCGTAGCTCA
84098 GTACCCGCCTGCT-GGCGGGG
1 GTACCCGCCTG-TAGGCGGGG
84118 GTACCCGCCTGTAGGCGGGG
1 GTACCCGCCTGTAGGCGGGG
84138 AGTCCCTAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.05
20 18 0.95
ACGTcount: A:0.07, C:0.33, G:0.45, T:0.15
Consensus pattern (20 bp):
GTACCCGCCTGTAGGCGGGG
Left flanking sequence: Indices 83598 -- 84097
CGCAGAGGAGGGAGCCAAAGCCGTAGAGTACGTCGGGGAGGGGCTCGTCCGGGATTCGGAGAAGG
GAATAACAAAAGGCTTGTAGAACGTTTTATCGCAGTAATCGCAGATGCTATAACACTGTTACCAC
GGGGGTGGAGAGCCGAGTCGAACATATTTCAGACCGTGGATGTATGGTTACATTATAGCATTGTG
TGATGAAAAGGAACCAGCTGAAAAGCAGCGAGCGGAGCTTGAAAAGCGAAGCGAGCCAGCTGAAA
AACGTATGCGCGCGTTTGACTAATAGGCTGAAAAGCCGTTGCTTGCTGGCTTCAAAGCTTATTAG
TCAAACGCGCTAGCGCCTGAATTGATAGTCGTTTTGAAGCGCTTCAAAGCCAGCTTCAAAACTCG
ACTTAAGGTAAAGTAATGACTAATTATTAATTACTATAATTGGAGAAGCTTAAGCTACGCTCGGA
CCTCTCTTGGGAGAGGTCCTTCTCTTCGCTACGCTTCGTAGCTCA
Right flanking sequence: Indices 84138 -- 84637
AGTCCCTAGTCGTTTGTAAAAGCTAGCATTGCACAAGCGATTGGCGCTTGTTCAATGCTAGCGAA
CAAACGCTTCGCTTCACTCGAGCTTCCTACCCAGGAAGCTCTTCGTTCGCTTCGCTCACTTTCAG
CGCTTCATGTTCATTAATCAATATGAATAACAATTAATAAAAGCTTTCATTATAAAAAACGTAGT
CACGGCCTGTGCTATGTAATTTCCCAGGGAGCCAAGCCACTCGCCAATCTTCTACTATGCTATAT
GAAGTCAGTGTGTTTACCTAAACCTGATAATGTGGCTTTCATGCAGCATTCTAAAATTGCGGGGA
TCAAGCCATGCGATGCAACCTGCTTCCTTGGGTACTTAAGGCTACCACAGCATCCCGGTTAGAGA
GCTATAAGCGCAGGAGAGGTGGGAGCAGCACCAATTGATCGTCGATCCGGATCCCGTTGGAGTCC
CGCTAGTTCCTGTGCTAGTATCCATCCCTTACCTAGTCCCAGCAA
Found at i:88012 original size:18 final size:17
Alignment explanation
Indices: 87977--88016 Score: 64
Period size: 18 Copynumber: 2.4 Consensus size: 17
87967 CTGCGCCTTA
87977 AAGCG-CCTTAAGTCTT
1 AAGCGCCCTTAAGTCTT
87993 AAGCGCCCTTAAGCTCTT
1 AAGCGCCCTTAAG-TCTT
88011 AAGCGC
1 AAGCGC
88017 TTCCTTGCCT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 5 0.23
17 7 0.32
18 10 0.45
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (17 bp):
AAGCGCCCTTAAGTCTT
Left flanking sequence: Indices 87477 -- 87976
CTCTTACCAATTCTGTATAAGTAAGTGTACGTTGCCATTAGTTCTTAGAAGCGATGTTCTGTCAT
TCCCAATTGATCGATATCTGCCATTGTTCGTTTGTGATGCCCCGTTGGATTTGTTCCAAGAAATG
GAGTGAAGGCATTAGCTTACTCTAGGTAGTGTGGATAAGCAAATGTAGATTTTGTGTGCACAAGC
GTCTGTCCCTTCTTTTGTTCCAGTCTTCGCTTGTGTTATTACTTATGTGTTCCGACATGTGAGTA
GAAGCGCTGTGCATTTATAAATGCATAAATATGGATTATGTGAACTATAAATGAAGGAAATTTCA
TCTTTTGACTATTCAACTATACTAAAGACAACGAAAAACAGAGATAGAGGAATAAGATCATCAAA
CTCAGAAAGTGACTGTTCCATAAATAAGAAACGGAGAAAGTCACTGTTCGGTAAGTCCGTAAGCT
CTAACTAACCAGATTACAAGCAAGCCATCAACCCGCTGCGCCTTA
Right flanking sequence: Indices 88017 -- 88516
TTCCTTGCCTTATCAGTTGCTAACGCTTTCTTGCGTTACTGCCTCAAGCACCGCTTAAGAAGGAT
AAGAACGTTACCCCAGGGCTCCCCCGAGGGGGGAGAGTGGGAATGAACAATCCTACTAAGGCCAA
CCACTAAAGCCGTTATGAACCTCTTTTGAGAGAGTCCCTTTTCTTCACTAGCTTAATAGCACCTA
GGGAATTCTCAAGATGTATTTATTTATTCATCATTCTTCAAAAAGGAAGGATAAAGCCACAACCG
TCGAATCCTTCCTGGCTTTGAATCCCATAACTAAACTGTTCCTGGCTTTTAGTCTGAAGGTCCCT
TGGCTCACGGCTTCTTCTTGGGTCCTGTCACAGCTTTAGTCATCCTGCCTGAAGGAAGAGTGTTC
TCCTTACGTAACTTTAAGGAGTCTTTATGTTTTCATTCTTGTTGGCGAAGCAAGAGGGGAGACAA
GAGAGAGTAAGCACGACTAGTAGTACGCACGACTAGTAGTACGCA
Found at i:88496 original size:16 final size:16
Alignment explanation
Indices: 88477--88517 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
88467 GACAAGAGAG
*
88477 AGTAAGCACGACTAGT
1 AGTACGCACGACTAGT
88493 AGTACGCACGACTAGT
1 AGTACGCACGACTAGT
88509 AGTACGCAC
1 AGTACGCAC
88518 ACCCTCCTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.34, C:0.24, G:0.24, T:0.17
Consensus pattern (16 bp):
AGTACGCACGACTAGT
Left flanking sequence: Indices 87977 -- 88476
AAGCGCCTTAAGTCTTAAGCGCCCTTAAGCTCTTAAGCGCTTCCTTGCCTTATCAGTTGCTAACG
CTTTCTTGCGTTACTGCCTCAAGCACCGCTTAAGAAGGATAAGAACGTTACCCCAGGGCTCCCCC
GAGGGGGGAGAGTGGGAATGAACAATCCTACTAAGGCCAACCACTAAAGCCGTTATGAACCTCTT
TTGAGAGAGTCCCTTTTCTTCACTAGCTTAATAGCACCTAGGGAATTCTCAAGATGTATTTATTT
ATTCATCATTCTTCAAAAAGGAAGGATAAAGCCACAACCGTCGAATCCTTCCTGGCTTTGAATCC
CATAACTAAACTGTTCCTGGCTTTTAGTCTGAAGGTCCCTTGGCTCACGGCTTCTTCTTGGGTCC
TGTCACAGCTTTAGTCATCCTGCCTGAAGGAAGAGTGTTCTCCTTACGTAACTTTAAGGAGTCTT
TATGTTTTCATTCTTGTTGGCGAAGCAAGAGGGGAGACAAGAGAG
Right flanking sequence: Indices 88518 -- 89017
ACCCTCCTAACCCCCGGCGGGGGAACGCCACTAACACAATCCTACTAAGGCCAACCGCTAAAGCC
ACTAAAGCAAGCCATCGGCCATATAAAGTGTTCCGTGAGTGAGAACTTAATAAAAAAGGAAACAC
TTTGTTTCACTCTTCTTGAACTGGCTTAAATGAAAAGAGTTCCCAAGATTTTAGAATATGAAAAT
TCTCGTAATAAATATAAGAGCGACAGTTGAGTTTCGAGCTATGCGCATACAGAGGGATCGGTATC
TTTGTGTGTCTAGCTTAGCTTAGGTTGATTGTCGGAAGAACCCCTTTGCGCATTGTTGGGCTAAA
GCGAACTTCTCAAATTCAGTGCTCAAACATACGACTTTTATAACGTGCACTGGACGTCGATAGAT
CCATTTTGGAAAAAGCGTTGAGGTCGTCTCGGGGAAGCGCTATCTTAGTCGATTAGGCTGATGCT
GTTGAGCCGATGGTTTGAATCCCAATCGCCAAATAAACAGCACAT
Found at i:116031 original size:52 final size:52
Alignment explanation
Indices: 115975--116075 Score: 202
Period size: 52 Copynumber: 1.9 Consensus size: 52
115965 TTTGAAGCTG
115975 GCTGAAAAGCCTATTAGTCAAACGCGCTCATACGTTTTTCAGCTTGCTGGCT
1 GCTGAAAAGCCTATTAGTCAAACGCGCTCATACGTTTTTCAGCTTGCTGGCT
116027 GCTGAAAAGCCTATTAGTCAAACGCGCTCATACGTTTTTCAGCTTGCTG
1 GCTGAAAAGCCTATTAGTCAAACGCGCTCATACGTTTTTCAGCTTGCTG
116076 TGCTCCGTTA
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.31
Consensus pattern (52 bp):
GCTGAAAAGCCTATTAGTCAAACGCGCTCATACGTTTTTCAGCTTGCTGGCT
Left flanking sequence: Indices 115475 -- 115974
AAGTCTCCATCTGAATCTGTTCAGCACCTTTTCCACTCTTGTTCTAGGGTTCCCCATGAAAAACG
AGCACCCCTATCTAGTGACGGGCTTTGACACGTTCGCTTAGGGCTTGTTTAGCGTATCAAAAAGC
GGCAAACCGCTTGAAAGCAAAGTCATCCTTCAACTTCGCTGCCATGTTGTGCTAAGCAAGTCACA
TGGTGCTCCGTTCACTGTGAGCAAGCACCTGTGTCGTGCCATGGGTGTTCCTGAGTGCGGGTACC
TTAAGAAGCAGCAAACTTTAAGGTTCATGAAACCTGCTGAAAAACTACTGAGCGCGCAACGGCTT
TGAAGCCGTTGCTTGCTGCTTCAAAACGACTATCAATTCAGGCGCGCTAGCGCGTTTGACCTTAG
TAATAAGCTTTGAAGCCATGCTTCAAAACGTAAGCTAGCGCGCAACGGCTTTTCAGCAGCCAGCA
AGCAACGGCTTCAAAGCCGTTGCGCGCGCATACGTTTTGAAGCTG
Right flanking sequence: Indices 116076 -- 116575
TGCTCCGTTAACTACTAACTACAGGTACCTTTCAAAGAAGCTGTGCTCCTGGGATACGAAAATGG
GGAGGGGATGGGGATACCAGCTTGAATGCTAAGCAGCAAAAGAAGAAGCAAAAAAGAAGCTTTCA
AAGTATAGTGAATCGGTCCCCCCATAGAAGCAGGCCTGTAGATGTACCTTGGAGGCACACGTGGA
TGAGAGTACCACCGCTGACATAAGCGTCACATCCCATGATGAACAAACAACGGTGGTACGATCAT
TAGCATTGAGTCACCTCTATCATACGACATTACACGACGAATAGCAGTGGAACCGTTTGAGACCT
CAGATGCCACCCGGTGAACCAGGTGTAGTATACGGGCTGCTCTGTAGGTAGCTATGAACTCGTAT
ACGAGTTCAGTGGCAACAAGAGCTGCAGGTGAACAAGAGAACACCGACGCTCTGGCACCACAAGC
ACTATACTGAGCAGTATACGAGAACAGCGGCGACGGTTTTCCCGG
Found at i:123668 original size:18 final size:19
Alignment explanation
Indices: 123645--123684 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
123635 ATTATTCTTT
123645 AAAGAAAG-GAAGCT-AACG
1 AAAGAAAGCG-AGCTCAACG
123663 AAAGAAAGCGAGCTCAACG
1 AAAGAAAGCGAGCTCAACG
123682 AAA
1 AAA
123685 CAAGCGAAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.55, C:0.15, G:0.25, T:0.05
Consensus pattern (19 bp):
AAAGAAAGCGAGCTCAACG
Left flanking sequence: Indices 123145 -- 123644
TGTGTTTATGCAGTCCAAACAGCAACTTAACACAATAAACAGCATAACAAACAGTCCGTTTCAAC
CATTGCTAAAGCAAAAATCTGAAGTGTTTTCATGTTTTTGTTATAAACAATTCAGTGCTTTGGTG
AAGACACAATTCGAGAAGCCCATAAAAAAAAGAATTTGACGATCTGATTCTGGAGGATAATACAT
GTAAAACTCCATTTCTCAATATATTATTTCAAGAGGCACTGTTCATCAGTGATCTTGTGCGTATA
CTCCTAGAATAGCAGAGAGGAAAAATAGATACTTATTGGAAACGGTTAGAGCTATGATGTTTGGG
ATGAATGTACCTCGTTTGGGCAGAAGCTGTGTTGACCGCAACATACTTGATCAATCGCATACCGT
CAAAGTTATTGCTGGAAAATCTCCCGTCAGAAGTTCTTTCTGGAAGCATCCCTGATGACTCTAAT
TTCAAAGTCTTTGGCTGCTGTTAATATTCAAAACGATTATTCTTT
Right flanking sequence: Indices 123685 -- 124184
CAAGCGAAACTCGGCAAGGAGAAGGCTGAACCCAGGTGCTACACTACAGTAGGCGTCACCTGGGG
CCGCACGACTCGGGCAGACTCTCTACCCGTGCGCGTGACAGTTGGTATCAGAGCGGAGTTTTGGG
TAAATCCCCTTTTCTGCTAATTCTCTTCTTGTTGCACCATGTCCAAGCTTGACGATAGCAGTGGA
GCGCTGTCTGCGGCGGCTGTTGCTAAGGAAACACTCGACGGATCGAGTGACCCAACTTGATGGCA
AGGTCGACCATTTGGGCTGACATAGAGACTATGGCAGAAAGGCTGGAGAATCTGGAATCGTTGGT
CACCAGACTCAGCGATCGCGGTGATCTTCCCAGTGAAGGAGAGCCGTCTTCATGGGGCCTCAACG
ATCTCGGTGGCGATGTCCAAAGCGTGACGGACCGGGTCAAATTGAGGAGCTTGCTGTGGAGATAG
GTCTCCGGTTCGTGAACCGAATGTCTCACCTGGCGACTCCAGACG
Found at i:129780 original size:15 final size:15
Alignment explanation
Indices: 129760--129789 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
129750 TGACGGTTGG
129760 ATGTACTGTCCTGTA
1 ATGTACTGTCCTGTA
129775 ATGTACTGTCCTGTA
1 ATGTACTGTCCTGTA
129790 GTGGTCATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.40
Consensus pattern (15 bp):
ATGTACTGTCCTGTA
Left flanking sequence: Indices 129260 -- 129759
TTCTCAAGGGCTTCGTTTTTGTGAGAAGACCTAATGTCAACATTAAAGGCTCGTATAGACCTCTG
TTTCGTTTCGTATAGGCTTTCTACCAGTGCTCTATTAATAGTCTCTATCACTGACCGGTCTGGAT
CCTAGTAGTGTTGATGAAGCCGGGCTTTGACCATGTCTCCCGAACAATCTCAGTAATTCATTCGC
CAGCCAAATGATTCATCGGTTATTGATGTAGATTCGACCGGGATAAGGCTATACATTCGATATCA
GAAATGACCAACTAAATGCCATGTTCACAACGATCAATTTCCCAGCTACGAGGCGGCCAGGCCGA
TAGCCAAGTCATAAAGCTAGTAAAGCCGGAAAGCTAAGCTATGTCCATCATTATGACTACGTCTA
CTATTATTAGTAAGGCCAGCCATTCAGGTTACTAGGGCCGGTCCCTTCCTATTAAAGCCGTTTAG
GTTGGCAAGGCCATTAAACTTCGACGGAACGAAGGTGACGGTTGG
Right flanking sequence: Indices 129790 -- 130289
GTGGTCATCACTATTCCTAGTGGGTTTACTGCGAGATGCATTCATGCTAGCCATGCCGTGATCGT
GACTACCGCTAGGGAAAGTCGGGGATGTTAGGCAAAAGACGCACTTTCTTTTATAGGAAGGAGGA
ACCTTCTGTTTGTAGTATAGATTCATATTCCATAGAGCGAGATGCTCATGGGATGAAGAACCTGA
TGACCTAGCTTATTCAGTCGAGTGGATTTGATCTGCAACTGCTGCTTCTCCCCCCGCTGATGCTG
ATTCCCTACCCTAGCCTGTGGAAGCTGATCCCACCCACGCCGTAAACGGATGCCCTACCTGATCC
ATTTCAAATCCTGCCACCAGCCGAGCTTGAATCCTCGTAACCTGCCGCTTATCATTGAACTCCGA
AACCGTCGAATGGTAGGAATTTCTCGACTCGAACCACCGGCCAGTCAGGAGCATTTTGCATATGA
CGATGCTCCGATTCGTTTTTCTCCTTGATTTTCCCCCTCGACTAC
Found at i:137444 original size:12 final size:13
Alignment explanation
Indices: 137422--137450 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
137412 CCGATTTCGG
137422 TCAGATGCTAGCT
1 TCAGATGCTAGCT
137435 TCAG-TGCTAGCT
1 TCAGATGCTAGCT
137447 TCAG
1 TCAG
137451 GAGCTTCCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.21, C:0.24, G:0.24, T:0.31
Consensus pattern (13 bp):
TCAGATGCTAGCT
Left flanking sequence: Indices 136922 -- 137421
TTCTAATAAGGAAGTGGAGGCAGGCCCAGCTTCAAAGCTTATTACGTCAAAGGCGCGCGCATACG
TTTTTCAGCTGGGTACGATCTAAAACGATTCCACATTCAAGAAAGAACCGGACCTTCAACCGTCT
ACTCAAATCTAATGATAGGAAGTCCAGACAAGACAAGTCCTTTCCTTCTAGTGTGCTTACCTAAA
TGAATCTTCTGCGCACCTTGCACTCTAATGTAGAGAAAGTCGTTTGTTCATGACAAGGAGACAGA
TTTGAAGATGAACCTTCACCCAAGATGTCAACCGAGTTCTTGCTTTTGGATTCAATCCTTGGTAA
AGTGTTCGATCTCGTGGAGAGGTACGCCTCTAAAAGAAAATAGAGTAGATATAGGCTCGAGAATA
GGCTTGATGAACAAACTGCCGATACGGAATCTGAGCCTTCAAGCCAAGCCCTTGAACTTCACTCC
TAGGCCATTCAACAAATCTGGCACGAAAAGTCAATCCGATTTCGG
Right flanking sequence: Indices 137451 -- 137950
GAGCTTCCTCTTAGTTAGGTTAGTTAGGCGCCTGGCCGAAGGTTGAAAGAATGATTCGGGGTCAG
AGGAAGGGGGCAGCATTCAACCTTTCCTCTATCTATGATTGGGAATTCCTCCAGTGAGTAGAAGT
CCCCGGAAAGGTAGATGGGATAAAGGATAAAGGTGTCACTCTGCCAAACCAAAGATTCGGGATGA
CCCTTTCATCGATTGGGATCAAACAAAAGTAGAATCATTTAGAAAGGCCGGGATTTTCGCGGAAA
GCCGATTTCCAACCTGTGACTGAGAAAACTAGATGAATCAAGGTTCGAGGACTGACCGGGCGATG
AAGTCAGCCCAGCCTTTCGGGTTTAAGAAGATTGGAGGAAAGTACTTACTAATTTATGCCTGGCC
GCAGGAAGAGCCCACTGGTCTCTCGATCCAGAACAACTAGGAGGCGAGCGGCCCCTTTCTCTCAA
AGTCTTTTGGCACATAATCGTCAGCTACTATGGATTTCAGGGTTT
Found at i:163345 original size:17 final size:17
Alignment explanation
Indices: 163323--163356 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
163313 GCCCGAGATG
* *
163323 TCATGATTGATGATGTT
1 TCATGATCGACGATGTT
163340 TCATGATCGACGATGTT
1 TCATGATCGACGATGTT
163357 GCTGACCGGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.12, G:0.24, T:0.41
Consensus pattern (17 bp):
TCATGATCGACGATGTT
Left flanking sequence: Indices 162823 -- 163322
AGCCTTACTAATAGGGGCGCCTTATCAATAGAAGGCTCCCGCGCTGCAAAGGGGGGGCGTCGGGG
GGGGCCTACGCGTCGCTGCTCCCGCGCACCATTACTATACAAGGGCTTTGAAGCCAGCAAGCACT
TGGGCGGAGTAAAGTCAAGCCTATTAGTCAAACGCGCGCATACATTTTGAAGCTTAAAGTGAAAG
TGACTCCATAGCCCTATAATCAAGAAGGGGGTAGCGGTCACTTCGAGATATTTGCAAGTAAAGCA
TATGCATGTGTACCAGGTGTTAAGAGGCAAGAATTAGATGCCACTTCTGCCAAATGCATTTTCAC
AGGCCGAATGATCGAGGAGATAATGATCCTGTGACAAAGAATGTATTTGTTGCCAGAAGTGCACA
TGTTGTTGAAACATCTCCCTATGACTTTGCCTATTATGGATGTTTGATGGAATATTACTATTTCA
TTAAGGGGGAGGGGATGAGGCTCCTTCGAAGAAACGCCCGAGATG
Right flanking sequence: Indices 163357 -- 163856
GCTGACCGGAAAACTATATATAGTCGACGCTTCGTTTGTTGTGTTGATTCCCTCATCCTTATCGC
CCCCTTATCCGTCACTCTCCTATGGATGGGAACCGGAAACAGATCTCCTAGCTGATTCAATGTCC
CTAGCCGGGGATAGGAACTACGAGTCGAGAAGTGGTTGGCTAGCCGGAAGGATGGGATGGATCTG
AAAACGTGATACCGATCTCAGCTAGTAGATGAAAGAAATAGAAGAAGGAGAGAGACGGGAATTCG
ATTGGTGGGTGGCGGGCGAGTAAACCGATTAGTGGGCACGAATAATTATGCCTGGCCGAACGTTG
GACTCCTCAAGACTCTTTCCTCTGTCAGGGGTCTCGGCTGACTGCGCTTTACCATCACTCGGGGG
TCCAGACTGAAATGACCTGCAAGGCTTAGCCGTACATGAGAAAGAATCGATTGATCTCTATCCAT
TCCGCCCATTCGGATTAGATGGCGTTCACCCCCTCCGAATTTGAT
Found at i:172487 original size:5 final size:5
Alignment explanation
Indices: 172477--172513 Score: 65
Period size: 5 Copynumber: 7.4 Consensus size: 5
172467 CTCGCTCGCC
*
172477 TACTA TACTA TACTA TACTA TACTA TACTA TAGTA TA
1 TACTA TACTA TACTA TACTA TACTA TACTA TACTA TA
172514 TACGGGTAGG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.41, C:0.16, G:0.03, T:0.41
Consensus pattern (5 bp):
TACTA
Left flanking sequence: Indices 171977 -- 172476
TAAGGAAACTCCGATTCGATCCGCCCCCCGGCTGGGAGGCATCTACCTCATCCCGATCACAAGGA
GAGGTTCACCATGATGGGGGGGTAAGGTACTTCTTTTTTGTTTTTTTCCGTTCCGGAAAGAATGA
AATGCATAGGGGACCATCCTTTTTTTTGCGGCATGCTCCTCAGATTTACGGATTCGCAGGGGGCT
GTTCGCCCTACTTAGTTGACTGACAATGACAAAGGCTTGCGAAACTAAGTAGCGCCTTTTGAATT
GAATCTTAAGTAGTCTATCAGTGGTGCGAAGCGGCTTTGCCCCTTTTCAGTAGGGGAGCGAAAGG
TTATACCTTAGAAAGTCAGCGAACAGCGGTTCTTCTATGTAGGGTGTTCCCCCTTGACTCTCCTA
ACGTCGAGCTGACGTGACTTCGTAACCTTTGCGTAGCGTAGTAGAATGAAGGCTACGCACCGACG
CTCTCTTATCTATTAGCCTGACGCGTCTTCGCTAACTCGCTCGCC
Right flanking sequence: Indices 172514 -- 173013
TACGGGTAGGCTAGGCTAACTCAGCCGCTGACTTCTACTAATCTAATGTAGGGGGCTTTCGTCGC
CTTTTCCTTTTTGAATAACCCATTCTCATTATCTTTCATAAGTAAAGTAGGCGAACCAGCAAGCA
GCTTCTTCAGAAGGCGCGGGAGCCTCGGGGGGGTCTGGGGGGGACGGCGGGAGCCGTCACGTGAT
AGGGCGCTTGCGCTTACGTTTTTCAGCTGGTCCGTCAGTAGCGTTGACAAAGAAGAACAGCCGGT
TAAAAGACAGCTATATATCTATATAGGCCAGCTTGACAAGCTACCTTTCCTCTTGATCTGAGGTG
CGAAGAGAAACATCTCTTTTTTATGACTTCCACTTCTCGATCCCGGCCCGGAAAAGTGACCGACC
AGGGCCCTATTGATGAATGAAAGAAAGGGTTTATGAGCCCTAGCCCTGTAAGCCCACACCTGTGT
AGAGTAGATCGTTCAACACCTGCGGCACAAACCCATTTTTGACCC
Found at i:173519 original size:44 final size:44
Alignment explanation
Indices: 173456--173544 Score: 160
Period size: 44 Copynumber: 2.0 Consensus size: 44
173446 CGATTTTCTA
*
173456 TTCACTCATGATCGGGCCTGACCTGGTCGACCCGATCATGATAT
1 TTCACTCATGATCGGGCCTGACCTGGTCGACCCAATCATGATAT
*
173500 TTCACTCATGATCTGGCCTGACCTGGTCGACCCAATCATGATAT
1 TTCACTCATGATCGGGCCTGACCTGGTCGACCCAATCATGATAT
173544 T
1 T
173545 GAAGGATGGG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.21, C:0.29, G:0.20, T:0.29
Consensus pattern (44 bp):
TTCACTCATGATCGGGCCTGACCTGGTCGACCCAATCATGATAT
Left flanking sequence: Indices 172956 -- 173455
CCCACACCTGTGTAGAGTAGATCGTTCAACACCTGCGGCACAAACCCATTTTTGACCCATTGGTC
CTAGTATCATAGGCGACCGAACGGCCGCCCCCCTAATTACTAGACCGACCTGCTGTAATAATTCC
ATAAACACCTAGCGAAGATATGGCAAACAAATAAAGTAGCCCTATGTTCGGATCTGACAATACCA
TACCATAATCAAAAGGTACAACGGCCCGAGCGACCAGACTTAACATAAATGTAGCCACTGGAGCC
ATTCTAAAAAGGGAGAAATTAGCACTACTTGGTGAAATAGGTTCTTTTAGAATCAATTTCGAACC
ATCTGCTAGAGGTTGTAACAATCCGAACGATCCCACTACATCAGGACCCTTTCGACGTTGCACAA
AAGCCATTACTTTACGTTCAGCTAGCACTAAAAAGGCTACTCCTAGTAGAAGTGGTAGAATTATT
CCAAGTATTTCAGCTGGAACAGCAATGTACGTTTTCGATTTTCTA
Right flanking sequence: Indices 173545 -- 174044
GAAGGATGGGACCTTTTCTCGAAAAACTCCGGATCCCGAGAAGAGATCTTTTGAAGATGGTGCAT
AATCGAATCCTGTTACGTTACTTCGAATGGAATCTTAGCCCGCCTCACTTGACTGAGCATAAGCG
AAGTCAAGGGAAGTCATTCTAACTAGTGGCTGAGAGTAAGCAAGCTACCTTCATTCAACAGATTT
GTGGTTGAGTCAATAACATGCTCTGGGTCGGGAATCTTTGCTCTTCTCTTTTGCATTTCCGCTGC
CTGCGTTCTTCTTCGTGTCCGTCCGTATCGCAAAGCTGGTCGACGCCAGCTGTAATGGTTGAAAA
TAGGGGGCCAACCGACGACCCCCTAATAGACGCTTTGTTCGATAAAGCAAACGATTCGTTCCGAC
AACTTCGGACCAGATTAACCCCTATGAATTCGCCGATCTTACAAGATCGATCGGGCGGGCTGGTT
GGGAAGGGGTGATTAGCGGAGAAAGGAATCGCTGAGAGATAGATT
Found at i:174735 original size:16 final size:16
Alignment explanation
Indices: 174714--174745 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
174704 AGATGTCCTC
174714 CAATTATATCTTATAA
1 CAATTATATCTTATAA
174730 CAATTATATCTTATAA
1 CAATTATATCTTATAA
174746 ATCGTCCACA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.12, G:0.00, T:0.44
Consensus pattern (16 bp):
CAATTATATCTTATAA
Left flanking sequence: Indices 174214 -- 174713
GTCAAAGGTATCTAACCTTCCTTCCTTATGAGTGGAAATCCAATCCCGTTTTGTCTTTTTTGCAT
CAAAACCAGCCAGCCGGAAATCGAATTGAAACCCGGTGCATTTTTTCCGACCATTTTTGAAAAGC
GCATAGTTTCTCCTCAAATAAAAAAATGACCCGGGGAACGCATGAGATATATACCTAAACCAGTA
GGTCCTTGAGCGGATCCCACGTTAGCCCCAAGACGTTGGTCTCTAACTAGAAAAGTCAATGCGTC
GAGCTTGAGAAGCTTCTGGGCCAGTGGGCCCGTCAAACTCACTGGGATAAGCGGTATTATTGAAC
CAGACGAAACAACAAGCGATGAAACCAAAGACAGATAAAGCCTTTGAACTATAAGACAAGTGACG
CTTCTCCAGACCATACAAATGCGCGGGGAGCCCATGCAAACAGACGGGTTTGGTTAAGATATGCC
AGGTTCCACCAAGTATACAAATGGAACCTAACCATAGATGTCCTC
Right flanking sequence: Indices 174746 -- 175245
ATCGTCCACACTAACAATCCATCCTTCTCCCCCAAGGGAAAGGGGGATTTTAGTGAATAACCAAA
TATAACACGTCGGGCTGACGGGTCGACGTTGGTCATTTTTCTGACATCTCCCCCCACGGGAGCCC
AGGTATCATATACGCCTCCAAAATCCAGAGCCTTGAGCACTAGGAGAAAAGCACCTATACCTAAC
AAGATTAAGTGAATACAAAAAATGTTGGTCATTTTCTTTCTATCTTTCCATACATAACCGCAGAA
TGGAAAGGATTCTTCAAGAGTCTCAGGTCCGAGAAGTGCATGATAAATACCGCCAAAGCCTAAGA
CTGCAGAGGAAATAAAGTGAAGTACTCCAGATACAAAGTATGGAAAGGTGTCTATAACTTCCCCA
CCCGGACCTACCCCCCAACCTAGAGTAGCTAGATGGGGAAGTCAAATCAATCCTTGTTCATATAT
AGATAGGCTTCTCTGGTACACGAAATGAGCCACTTCAAATAGGTT
Found at i:188616 original size:13 final size:13
Alignment explanation
Indices: 188598--188623 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
188588 AGTCCACCGA
188598 CTTACAGGTAAAG
1 CTTACAGGTAAAG
188611 CTTACAGGTAAAG
1 CTTACAGGTAAAG
188624 GTATAAGAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.23
Consensus pattern (13 bp):
CTTACAGGTAAAG
Left flanking sequence: Indices 188098 -- 188597
CAGCACCAAAAGCGGAAAGGTAGGAGCAAAGCCAGTTGTGGTTTAAGTTCCTTATCGAGACCCGT
ACCCTTTAGCTTCCCTTCGTACGGTTATAGACCTAGAAGTAAAGGCAGGAGCATCCCTTCCATTT
CGAGAGCTAGAAGCAGGAGAGCTTGTTGTTTACCCATAAGCATGAAAGGTCTAGCATCAGTCGTT
TCAGCAAGTGGTTAAGCAAGTGATTCTGTAAATGGAGCATACTTTGTTCTCGCACCCACCCCATA
TAGATAGTTGCTTCGATCGGCCCAACCCCCATTGAGAGAGAGGAATGGATTCTATATACTCTTTT
TCGAGTGAGGGGAATCTGGCACTTTGACACGGCTACTACGGTCATTATAGAAACACTCTTTCTCT
TTGACAAGCGAGTCAAGATCTTCTTCATCGGATCACAGAAGGGCTTAAGGATATATCAGCAACAG
GGATTTTCTCCGGCCTGCCGAGCGGAAAGACTCACAGTCCACCGA
Right flanking sequence: Indices 188624 -- 189123
GTATAAGAAGATATTTGATCCAGGTAATAAGTAGCTAAAAGGGGGAGAAGAGCCAGGAAGAAGTT
CTATCTGATGAACCGGGAGGATACCGGAGCACATCATGTTCGAATCCGGGTTAGAAGCAAATGCG
ACCTCCTTCGCCCCCCTATGTGCTGAGAATAAGAGGAGCCAGAAAGTGAAAGTCATTTCAGCTTC
TCAACACATTGCTTGTGTGAAGATTGGTGAAGATGGAATGTGGGGAGAACTGAAGGAAGCCTTGA
AAGGTCCTATTATTCCCTACGCACCTCCAGGGCCAAGAGAAACGGGAAGTCAGCATATTCAAACG
GAATTTATCTTTTGCCATCCACTTTTGTCTCTTCATCCCGTTCTAAAAAGTGAGTTTTGTCTTAT
TGTTAAAGTATAGATGTGACTAGAGAAAAACTTCAGATAAAAGGTATCTCCATCTATCATCTAAC
TCTCTAAACTCAAGCTTTTATTAAAGAGAATAGGCCTTTCAGAGG
Found at i:202414 original size:18 final size:17
Alignment explanation
Indices: 202391--202433 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
202381 AACCGTCGTT
*
202391 GACTATGACAGCAGTCGC
1 GACTATGACAG-ACTCGC
*
202409 GACTATAAACAGACTCGC
1 GACTAT-GACAGACTCGC
202427 GACTATG
1 GACTATG
202434 GCAGGGCGGT
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
18 17 0.81
19 4 0.19
ACGTcount: A:0.33, C:0.26, G:0.23, T:0.19
Consensus pattern (17 bp):
GACTATGACAGACTCGC
Left flanking sequence: Indices 201891 -- 202390
ACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAG
ACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACC
TTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATAACACTTCTC
CTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGTC
CTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATAGGAG
AGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGC
GCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTCACCGGGAGGATC
GCCCTCCCAATTCGAAGTTTTTTCCTGGAAGTTTCAACCGTCGTT
Right flanking sequence: Indices 202434 -- 202933
GCAGGGCGGTACGCTCTGCTCTCTCGCGACCCCTACTCTAATCAAAAGACTAAAGGCCAGATTCA
AAAGGCGAGCACTGAAATGAGCGAGTAGACTCGTGACGCTTAACGACTGCGGTTTCATAAAGAGT
GCTTCGAAAGGTGTCAGCAGGTGCGCGGAGCCGGAGCCCGGCATGTTCGCCCGCTGGGCCGAGTG
TTCGCCCACTTCAGAGTCTTCGCCTTTAGATAACAAAAAGTGTCCGCCCCGTCAGTTATTAGGTC
GCCAAACTACGACGAGAGTTTCGCCTTTTGAAGCAACAAGCAGCTGAAAAACGTGACGCGCCCTA
GCGCGCAACGGCTTTTCAGCTAGCCGTTGCTTGCTGGCGCGCGGGACTTTTTCAGCTCCAGTAGC
GTAGGGCGACCGGGCCAGGCCGAGTCAGAAAGGCTTTGATGACTCGACGGTGAATATTAGGGAAA
GGAGAGCGAGGGGAAGAGGGGGCAGCCCTCGGCCCGATCATCCAA
Found at i:218833 original size:36 final size:36
Alignment explanation
Indices: 218786--218895 Score: 166
Period size: 36 Copynumber: 3.1 Consensus size: 36
218776 AGGATGGTTG
* *
218786 TTCTTCGTCTTCTACTAGTCTAGTGCTATCATCGTC
1 TTCTTCTTCTTCTACTAGTCTAGTGCTACCATCGTC
*
218822 TTCTTCTTCTTCTACTAGTCTAGTGCTACCTTCGTC
1 TTCTTCTTCTTCTACTAGTCTAGTGCTACCATCGTC
* * *
218858 TTCTTCTTCTTCTACGAGTCTAGTGCAACCTTCGTC
1 TTCTTCTTCTTCTACTAGTCTAGTGCTACCATCGTC
218894 TT
1 TT
218896 ATGGTTATCG
Statistics
Matches: 69, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 69 1.00
ACGTcount: A:0.13, C:0.29, G:0.13, T:0.45
Consensus pattern (36 bp):
TTCTTCTTCTTCTACTAGTCTAGTGCTACCATCGTC
Left flanking sequence: Indices 218286 -- 218785
CAACCCCTTTGTCTACGGCTGTGAAAAAAAAAAGTACTCATACACATGTGTCCTCCTTTAGAGTA
AAACTGATGTCGTTCTCTAGTTAGTATGCTAGAGGGATATTAAGGTACCTTTTATACGGGGTAGT
GGCACATTAGAAAAATTCCCTGGAATAAAAGAGTTCACAGGAAGCTCTATTCCATGCCGTTCTCC
TTACTGTATGTTTTCGGATTCGTGTTACCGAGAACCTATCATAGAAGGGGGTATAAAAGGATACT
GAAATGTCCAGGGTAGAGACACCAGAAATAGACTGACCGTATCGTATTGAAGGGGAACCTGATAT
ATTCTTACCGTATCGTATTTCAGGGAAAGCCACAGTTTTACTTACAACATAAAATCAAAAAAATG
TTCAACTCAATTGATATTACTTCTTGGCACCATTTTTTAAATGAGATCGAAAACCTACAAATGTT
TTCTCTATGTAAGGACTTCGACGAGCTTTCTTTGGAGGATGGTTG
Right flanking sequence: Indices 218896 -- 219395
ATGGTTATCGTGGTTCCTTTCAGAGTTTTTTACGCAGTTGGACACATTCTCTTTGGAGCCAGTTG
ATTATTGAGCAACTACGAGCTCCTTTTATAGAGCTCCCTCGCCATTTGATGGATTCATCATTCAA
CTCGTATGACATTTTTATGGGGTTAGGATTTCGCTTTCTTCCGGGTCAGTTTCAGTTCTTAAATC
AAGAATTGCAGTTACCAGAATCCTTTGAGAGGTTGTATTTAATAAATAATTCTCTTGGTTTATCT
TATAATAGCAGAGCTATTTCCGCCCAATTGTTGTTGCCTTTTAGCTGTGCCGGGGCCGGTATGCG
TGGTTTGATCACCGATGGGTTTACGAAAATATTGGTGGAGGTCATTACTTATTATAACGGTAGGT
ATGGGCGTTTCTTGGTTCATGTCTGCTTGGGCATAGGTTGTACTGTCTGGTACGGGTTTGAGCCT
GGCACAGCCAATCAGGCCCCCGTGGACGGCTTGTTCACTCCTTTG
Found at i:221752 original size:17 final size:17
Alignment explanation
Indices: 221727--221761 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
221717 CCTGTCGTTG
*
221727 GAGTTAGCGGGATTAGA
1 GAGTAAGCGGGATTAGA
221744 GAGTAAGCGGGATTAGA
1 GAGTAAGCGGGATTAGA
221761 G
1 G
221762 GTTGGAGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.31, C:0.06, G:0.43, T:0.20
Consensus pattern (17 bp):
GAGTAAGCGGGATTAGA
Left flanking sequence: Indices 221227 -- 221726
CCGACCTCAAAAAAGAAGGCGGCTCAAATCTCATCCTTTCTTTGCCTTCCTTGCTTGCTCTAAAC
CTAGATATGCAGACGTTATAATTATCGTCTTATCGTCTGCATCTATCGTCTTATCGTCTCCACCA
CCCCATGGATGATTCTAAAACCGTTAGGTACATGAGCAATGATCATGCGCTCACACTCGATCATG
CGACAGTCGATCTGTCCATCCGACTACATTCGCTGGGGGTTGAGGTTGTCCAATTTCAATTATGT
GCCGCTCGTTGACATATAGTTTCCATTGCCCGCTTATAGGTGTGAGAGATCTTCCTTCGGTTCTA
GTCAAGTATGGCAGCTTTAGGTCTCCTATTTCACTTTCACCAGCCATTGGGAACTCTAATCCACT
TTCATTTAACGGCAGGCGAGAAAGGATAGCAAGAAAGGTAGAAGCGGGGTTTGCTCCCGTTTCGG
GGTTCTCTTGTGGACTGGCTGTTGACTGGCCTTTGCCTGTCGTTG
Right flanking sequence: Indices 221762 -- 222261
GTTGGAGAAAACCGGTGCTTTTAGCTTAAACGGATTTTCACAGGTGAGTGAGATCGGAGCGATCC
AACTTTAGGAAATCCTCCGTTTTTGGCTTCACTTGAGCGATTGACGCAATCCAAGAGGAAGAGGA
AGTCAAACCGTGATCGGGCTTGCCTTGAAGGCTCTTGTCCGCTGTCTCGGTTCTTTCTTTCAATG
CAAGTTGACTAATCTGAAATCGACGTTCTTAGATGTCCACGTATGATTGTCAGAGACCACCAATG
AGGGTTTGGCTTTAGGAACCTTTAGTGAAATTTTCATCTTAAGAAAGTCGCTAAGGTTGGAAGTT
GACGATGAAAAGCAGATCAAACCTCATGGTTAGCCAGCAAAGCCAATCGCTGGGTGAAAGCCAGG
ATTCGCCTCAATTCGAGACTTGGGTTTGGTTCCTTGGAATGATGATCGGGTGCTTGCTACAATTA
AGGTTTAAGCTTCGAAATCAACGTTCTTAGCTGCCCGTGGATGAT
Found at i:222695 original size:18 final size:18
Alignment explanation
Indices: 222669--222709 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
222659 GACTGCAGTG
*
222669 TTGAACTGATTCTAATCC
1 TTGAACTGATTCGAATCC
* *
222687 TTGAGCTGATTGGAATCC
1 TTGAACTGATTCGAATCC
222705 TTGAA
1 TTGAA
222710 TTCGACCAGG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.37
Consensus pattern (18 bp):
TTGAACTGATTCGAATCC
Left flanking sequence: Indices 222169 -- 222668
ACTTGGGTTTGGTTCCTTGGAATGATGATCGGGTGCTTGCTACAATTAAGGTTTAAGCTTCGAAA
TCAACGTTCTTAGCTGCCCGTGGATGATTGTGACTTCGAGGGTTCGAATCAATGTTTGGCTTTAG
TAACCTTTACTGAGAATTGCAAAACTATCCCTTGGTCGAAGGCAACGATGAGGATCAGGTTAACG
ATTCCAATTAAACGCTAGGCTGTGGTTCCTCAGTTCAGCTAATCCAACCTTGACGGGAAGCTGGA
AGGAGAGTCTTCCTTTTAGGTTAAAAGAGCCCAATCCAGGTTTAGCTGTCTCAGGCAAGAGTTGC
TTAAGTGTTCTAGGCCCGCATGTGCTTCTGATTATAAGGGTGGTTTACATGATCTGCTCGAAACT
CGAGATGTCTTATTTTCTTTTAGGAAACTGCCCATTTCATCGATCTTGAGATTGAGGCGCTAGCC
AGAGATGACCCTCTTTGAAGATCTGGCCTCGCATGGACTGCAGTG
Right flanking sequence: Indices 222710 -- 223209
TTCGACCAGGGAAGAGGTCTCATATACAGTTCAGACGATCTTGAAGACGATCAGACAATAATTCT
ATCGTCTGCATCTAGCGTCTTATCGTCTGATCTTCTTCTCCTATAGGGATATAAGGAGAGTGAAG
CGAGGTCCCTTTAAAGAAACCCTCGGTATGGGGGGAGATCCAAAGGGGGGATAAGGAGACGATAA
GATGAGAATTCTAGCGTCTGCGTCTTATCGTCTGCATCTATAACTACTTCTATAAGGTCGGCCCT
TATTCCATTCCTTCCTAAAGTCAGGAATAGCGGCCTTGTTAGATAAGACAGGATATACTAAGTCA
ACAACTTCTTTACCGCTCGGAGAATCGGTTGTTATTTCACAGAAAAAGATGGAGATAGGACTCGC
CATAACCCGATGTTAGAGTCAAGCATTCCCCAGAAAGAAAATAAGGCAAACCAGTCAGGCTATCG
GGAGTTTGATTCCTAACAAGGGCTAACAACTCAAGCAATCTGCCT
Found at i:258662 original size:21 final size:22
Alignment explanation
Indices: 258626--258668 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
258616 ACTCTACTCT
*
258626 ACTATACTCTACTATAGTAGTC
1 ACTAGACTCTACTATAGTAGTC
258648 ACTAGACTC-ACTATAGTAGTC
1 ACTAGACTCTACTATAGTAGTC
258669 CGTCCGGCTG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.33, C:0.23, G:0.12, T:0.33
Consensus pattern (22 bp):
ACTAGACTCTACTATAGTAGTC
Left flanking sequence: Indices 258126 -- 258625
ACTAAAGACTATGCGCGTCGCGTGCTCGATCTAGCAATCTTGGACAATTGTTTTGATGAACTGTC
ACTAAACTAAAAAAGAAAGAAGAGAAAGAACTGGGAGTTGGCGCCTGGTTGCTTGCTTACCAAGC
CATCCTGGCAAGCTCCTCCAGTTCGATTATTATTCTTGACTTGACTTTTGATTATAAAAAGTACT
CACTATCAAAATGAAAGACGATCGATTATCTACCCAAGAAGATAGAGAGTCCCACATACGAGAAA
AGGTCACAAATGGAGTTGAACCAAGTAACATTGCAAAGGCATAATGATAGTAGGGTCGGGATATC
CCCGCCCTCCGAACCGGACGTGAAGGTCTCCCCTCATCCGGCTCTCTGCAGGGGAATCTCCACTC
ACTGCTTCCCCTAATATCCTCCCTTTACCACATCATGGGGGTTTACAGGAGATCCCAGAGGCTCG
CTCGGAAAGGCTGCTATACTATACCTTTTTACTCCACTCTACTCT
Right flanking sequence: Indices 258669 -- 259168
CGTCCGGCTGCTCTTGCTGAAATCATTACTCTTCATTCTCCCGTGCTCTAGCAATTGCGCTCCCT
AGACCACTACCATGTAGTTAGGTAGGGACAATCAATCCGTAGTGACGGGAATCTAGGAATGAATG
GGGATCCCTATCAATATCAAAATGAAGAATCTATATATATATAATTCTCCCTTTCTCTCAATAGA
TGTATCTGGTCTGATACGGTACAGTACAATACGAGACGATGGAATGCAATGGGATGGATGGTAGA
GGGCTGCCTGCGCCCAAAAGCGATGATTCACTTGTCCCCTTGTCCATAGGGACCTCGTGGCATAC
AACCGCAACGACTCCCGCTAGATAGCCGCCCTTTTCTCTCTTTTTACAGCCTCGTGGACGGACGA
AAGAAGGGAAGTTCAAGAACGGGGCAGTTTTGTTTGGCTCGCGAAGTAGACAGCAAGCAGCAAGC
AGCTTCAAAAAAGCCGTAGCGCGCGGGGGGGCTTTGGGGGGGGCC
Found at i:270785 original size:26 final size:25
Alignment explanation
Indices: 270749--270813 Score: 78
Period size: 26 Copynumber: 2.6 Consensus size: 25
270739 ACCTTGTATA
*
270749 TTTATCTTTATATTTCTTTGGATTT
1 TTTATATTTATATTTCTTTGGATTT
* *
270774 CTTTATATTTATCTTTCTTTTGATTT
1 -TTTATATTTATATTTCTTTGGATTT
*
270800 ATT-TATTTATATTT
1 TTTATATTTATATTT
270814 ATATCTTCGA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
24 10 0.29
25 2 0.06
26 22 0.65
ACGTcount: A:0.18, C:0.08, G:0.05, T:0.69
Consensus pattern (25 bp):
TTTATATTTATATTTCTTTGGATTT
Left flanking sequence: Indices 270249 -- 270748
AACAGGTTGGGAAACCAAGAGAACGCTTCGCGTTTTCTTATCTTCTTCCCGCCCTAGGAGTAGGA
GTCGCACAAAAAGAGGGATTAGCATTATTTACCCCATGATAAACCACTAACACCTTCCTCGTTGG
GGCTCCGCGCACTGGGAAAACGCTGACGCGACGGGAAACCGGCCACTAGTTACGAAGCTCCAATA
AGGTATCGAGAGGGCTATCACAGTCAGGTGCGAAGCAATTGCCCCCTATTTGTAAAGTACCCCTC
TTCCTATTTAGGGGGTTGAGGCGAGAAATGGCTTGATGAACCGTTCCGTTCGCCACGCACCGGCC
CCATTCACTTGCTTATCGTAGAGGCTGTAAGTACACAGTGCCCCACAACTATCAAGCAGATGGAT
GGGGATTTGAAACACGAGAGTGCCTACCTCCGAGCCGAGAGTGCCCGCCCTTTCTTTCAAGTAGG
CCACTTTTTCCGGAACGCAGTCCGGGATAACCGTGACCTTGTATA
Right flanking sequence: Indices 270814 -- 271313
ATATCTTCGATGCTGTCATTTCGAAATGTCCGCAACTCCGATTTTCCCCCGTTTCACCTCCCAAA
AAGCACAAAGCTTGACGAGCGCAGATGAGGAAGCGGGAGCAATAACACCAAGAATCTCTTTCTTG
TCCTTCTTTCTACTTAAGGGGCAAAGAGAAGCGCTTTCGCTACTGAGAAAGCGAACGGTCAGCGC
GAAGGTTCAAGACTTAGCCGAGCGTTAGCGAAGCGGAACGAAGCGTCGGTGCGGAGCGGACTTTA
TGCTGAGCCTCGGTAGCGAAGCACTTAAGATGAAGCGTCGGTGCAGAGCACTTTCAGAACGAAGC
GTCGGTAGCAAAGCTGACAACGCAACGCGTTAGCGAAGCGTTATTCTCATAGCGAGGCGCTTCGA
GTTAGCGAAGCGCTGTAGTCGCGCCGAAGCCCTATGTGCTATAATGCTGAGCCAAGGACGCTCCG
CCTTATCTATAGAAGCAGTCAACCGAGTTCTGAACGAATTAGCTC
Found at i:285987 original size:42 final size:42
Alignment explanation
Indices: 285940--286051 Score: 143
Period size: 42 Copynumber: 2.6 Consensus size: 42
285930 CAAAAGAGGG
* * *
285940 TGCTGTTAACGAGCGGAAAGCAGTCAAAACGTGATTGTTTGC
1 TGCTGTTAACGAGAGGAAAACAGTCAAAACGTGACTGTTTGC
* * *
285982 TGCTGTTAATGAGAGGAAAACAGTCAAAACGTGACTGTTAGG
1 TGCTGTTAACGAGAGGAAAACAGTCAAAACGTGACTGTTTGC
* *
286024 TGCTGCTAATCGAGAAGAAAACAGTCAA
1 TGCTGTTAA-CGAGAGGAAAACAGTCAA
286052 TATAACAGCG
Statistics
Matches: 60, Mismatches: 9, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
42 44 0.73
43 16 0.27
ACGTcount: A:0.35, C:0.15, G:0.27, T:0.23
Consensus pattern (42 bp):
TGCTGTTAACGAGAGGAAAACAGTCAAAACGTGACTGTTTGC
Left flanking sequence: Indices 285440 -- 285939
GCGTTAACGTCAGACTCCATGGAATTTCACAGCCAAGAGCTAACAAGATCGTTGTTAGCTTTCCA
ATCACCGTGTATTGGATCTGTTTGAGCGCGTTCCAAAAACAAAGTATTCGCCGACTTTCTTCTTT
CCTCAAAGGAACAACTGAACTGCCTGAGACCATTGCAGAAAATTGTTTCCATTTAAGCGATGAGG
AACAATTTGCAGGCCTGGGTTGTCATTTGGCGAGAAACCGAACACTGAATTTGCGGTGATTAGAG
AGGGATTTTGAGTGAAACATGATGTTTGTGAAGTACCCTCTGCTGCCATGAGATGTAATGGAGCA
AAACACTAGAACTACCAAGAACGAACAGAAAAAAAACAGCAAGTATTTATGCTGTTAATAGAACA
AACAGCAGGTGTGCATGCTGCTAGCAGAACAAACAAGACGAAAAAGGAGTCTAAGAACAAAGGAA
CACACAGCACCAAGAGCAAGCAAAGAAGAGGAAAGCAAAAGAGGG
Right flanking sequence: Indices 286052 -- 286551
TATAACAGCGACGTGTATATGCTGTTAACCAAGAAAAGAAAAGGGCAAAGTGCGGATTTGCAAGC
AGAAAAAAAAGGAAAAGAGTTCAGTGTGGAATGCAGATAGAAAGTACGGGAAAAGCACGCAGGAC
TGCTGATAACAAGAAAAAGAGGCAGAGCAGAACTGAAGTAAAAACAGTTGTGGCGTCCCAACTGA
AGGAGATTTTTGAGATTCAAAACAAGGAAATAATGTAAAATAGAGAGCCGGAGGTATATGAACAA
AAAACGACCCGAGTAAAGAGTAACAGATCGAGATTTGGAGGAAGTTTTAGGGCATAAAAAAAAAA
GTCATGTCAGAGGAGAAAAAAAAGAAAACTGCAAGGCGGATCTTACGTGTGATGCATATGCTCCA
CGATCCACACGCCAGTGCTAGGGTTTCTCAGAGCTAAGGATCTATTGCTCTGATACCATGTAAAA
AACGTCGGAATGAAGAAAGAATCCTATTCCATTCAAAAGCAAAAA
Found at i:309481 original size:21 final size:21
Alignment explanation
Indices: 309457--309498 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
309447 GGGTACAAAT
309457 AAGCCAGTAAAAGACAAGTAG
1 AAGCCAGTAAAAGACAAGTAG
* *
309478 AAGCCAGTTAAAGACGAGTAG
1 AAGCCAGTAAAAGACAAGTAG
309499 GCAGGGTACT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.48, C:0.14, G:0.26, T:0.12
Consensus pattern (21 bp):
AAGCCAGTAAAAGACAAGTAG
Left flanking sequence: Indices 308957 -- 309456
ACGAGACGCCTTGTCCTTCCTTTTGGTTTAGCCTTTCGAGTGGACTTTTTCTCGAGAAAGCCGAA
ATGCAGGTTGAACACTCTCTGTTACAGTTTGATGTCACTTTTTCTCTTTTTCGTTACTGGTGTAT
TGCTAGTGGACTCTAATAGCTAGTGGACTTAAAGAGCGAGCTGTACTGGTAGCTAGCTTACTAGT
ACTGGTGACTGTAAGAGCTGTACTGACAGACAGAGCTAGTGAGGTCCTCCAGACCGAACGATTGC
TATTGCTGTACTGTAAGAGCTGTACTGGTAGCTATTGCTGCTTGCTGTAAGAGCTAGTGCTGTAC
TGGTGACTGTACTTACACAGCTGTACTGGGTACTTACTTGACTGGGAAAAAGCAAGCGTCTGATC
AGATCAATCAAGAGATAGGGGTTCGGCCAAACATCTTTTTCCTAAGCAAGGACTACGCTGGCGAG
TGACGATTGGCCGAGGGGAGTTCCATCATGTAGCTGGGTACAAAT
Right flanking sequence: Indices 309499 -- 309998
GCAGGGTACTATGAAGCCAGTGGGGTACGTAAACGGGGACAGATCACATGGTTTTGTACTGGTCA
GCTTTGGGCTGGAGATTGACGATTGCCCTATCTCTTAAAGGGGGCCCTTCCCCGTAATCCGGGGA
ATACAGACAAGTGTCCCTGCCCCACTAATGGACGAAACCCCGTATTTTTGGCATAAAGACCTTTT
CCACTCATAAGAGTGAGATCCAAAGTGGAATAGTTTATGAAACCCCGTATTTTTCATTAAAAAAG
AGCGATTTAAGCATTCACACCACGAATTTTTCGTGGGCGGATGAGTCAACTCCGCTTCCTTACGC
ATTTTTTCGATGAGGACGATAAATCCACCACTGCCCAGCTGTGTGCCACTAAGCAAGCGCACAAT
GAAAAAGTAGATTCCTTTCTTAAAAAATGGAGAGCGTTGGCAGTAAAATGCCCAGAGCCACACTC
CCACGAGAGTCTAACTGACATGTGTCGAATGAATTTGAACTCTAA
Found at i:324462 original size:3 final size:3
Alignment explanation
Indices: 324454--324517 Score: 58
Period size: 3 Copynumber: 21.0 Consensus size: 3
324444 TATATTTGAG
* * *
324454 TAT TAT TAT TAA TAT TAT TA- TAT TAG TAT ATATT TAT TAT TAT TAG
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TA-T TAT TAT TAT TAT
* *
324500 TAT TAG TAT TCT TAT TAT
1 TAT TAT TAT TAT TAT TAT
324518 GAATCATTTG
Statistics
Matches: 48, Mismatches: 10, Indels: 6
0.75 0.16 0.09
Matches are distributed among these distances:
2 2 0.04
3 41 0.85
4 4 0.08
5 1 0.02
ACGTcount: A:0.34, C:0.02, G:0.05, T:0.59
Consensus pattern (3 bp):
TAT
Left flanking sequence: Indices 323954 -- 324453
CCGGATAAGCCTTAAAAAAAAAACACAACGGACCGGACACAAACAAAAGAAGCAAGAAGAGGGCC
ATGATGATGATCCTATGTTCGTTTTCGCCCTGCCCCGATGATGCGCTCCTAGCTCGCGGAGCTAC
ATACCGGAAAAAGAAAAAGACTCTCTTTGAGAAGAGAATCGTTGGTTTGACCGACGAACTACGTG
GGAAATACGAGATCTAGGCAAGCCGCTACATGTTATCCCCTGGCCCTTGAACGATAGAAGAACTA
CTTATCTTCTCTTAGATACCGGTCGATCGGTTCGCATCTATGGTCAATCAATAGGTCCGCGGATC
TATTCTTCTATACGAGAAATCGCCATCTCGTAGCACCACCACGACACCGATTCTCGTTCTTATTC
CGAGCCCCCCCCATGCCGTGACTTCGACTTATAGTATGATGAATGAGTGGAAAGATCTTGATAGA
AGTCCCTGTCCGATCCAACCAAAGAGTTCGTATCGTATATTTGAG
Right flanking sequence: Indices 324518 -- 325017
GAATCATTTGATTTATGAAATTTATATATAGGATGGAGTCATGGGTGTTTAGGATGCTAAGCAAA
GATGTGTGGTTTAGTGGTTTTTTGTTATGAACGGGACAGGGACGGTTGCTATCAGAACTGAATGG
GCTTCCCCGCGGGGGCGATCCAGAAAAGAAGACCTAGGCCAGGATTGGTCAAAACAATGTGGTGG
CCGAAGGGATGAATAGCTCATATATTTATTTATATAGAAATTCTTTGCCTTTTTTCAGTAGAATC
CCCGGTCCCAAACGACTGCGGATAGCCGCCAAGAAGAATGAATTCCCGAAGGGGTCCAATAAGAC
TTCCTTTCGAGTAATACAGGGACGGACTGATACTCCTAACTCCCGATGCAGGAGCAGGAATCTAA
ATGAGGAGGAGGGTTTCGAAACGCATTGAACCTCCATCGTCACATTCGTAATGATCAACTTTACG
GAGCCCTATCGCTCGGTTAGATAAGATAGGTCCACCCCAGAACTC
Found at i:332577 original size:5 final size:5
Alignment explanation
Indices: 332567--332594 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
332557 TCATCCGAAG
332567 TAGTA TAGTA TAGTA TAGTA TAGTA TAG
1 TAGTA TAGTA TAGTA TAGTA TAGTA TAG
332595 AACAGAGGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.21, T:0.39
Consensus pattern (5 bp):
TAGTA
Left flanking sequence: Indices 332067 -- 332566
AGATGTTCGCCTTTCGCTATTAGTAAGCACTCACTGACTTTCTTTACGTTGAGTTAACCCGGCGG
GTTCGCCTAGATGCCTAGTGGAGAACGAGCTGGTGGGAAAGAGCTGGAGATCATGAGAAGCATTT
CCACACAAGGAGGCAGGCGGCTGGGAAGCGAAGTTCGTCGAATGCCGACTACATGGGAAACAGAT
TCAGGATAGGTTGATTCATATTCTTGCTGCCCGCTCGATTTCGAGATGTTCCCGAGAAGAAAGAG
CTCGCGAGAAAGCTCGTCAGTGGAAATTGGTAAAAAGTCTCGATTCCGAGGAAGAAGGATCTGTT
CCCATGTAGTCGGGGCCGGCCACACCGGGGAATCTCACTAATTGGAAGGAAAAGGAGGGCTTCGA
TCCATTGTGATTCGGTTCCTTGGTGTGGAGAGATCTCTGCCATAAAACAGAGAGCTCGTAGGCCT
TATTCTGCAGATCAAAGAGCGACGTAATTCCCCATTCATCCGAAG
Right flanking sequence: Indices 332595 -- 333094
AACAGAGGCATTCTGGGCCGACTACTACGACTACATGCGCATCTAGTGCAGTGGCTTGGAAGCAA
GCTACCTTGACCATCTTCCGAAGTTCTAAATAATCTACTGATCAAACGCTGTAGGAGCGGACTGC
TCTACATTCAGCCACGCCACAGTGACCCCCGAAGCGCTACGGACGGGACGAAATCAGGCAGCCCA
TTGCTGGCTCTGAATAACCAGCCCAGCAATAAGCTAAATTCTTCCATAACATAACGGGGCGGGGT
TGCGCGCGAGCCGAGTGACGTAGGTGCACAAGAGTACTTCGCGCCACAACCATCTCTTTTTTATA
GGTTCTACGGACCGATGCCTGCTGCTTCATCTGGGAGAAAAGAATCATAGATATGCCGGTCATTA
GAAGGAAGAACCGCCATAAAAAGATTCCTCGTGTATCATCTGTAGCAGAACTATGAACGGGAGCT
AGCAATCCGGACCGTATTGAAGAGGTTCCTGAGACACAGCATGGA
Found at i:346781 original size:21 final size:21
Alignment explanation
Indices: 346755--346796 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
346745 CCCTATTTAT
346755 TTAGATAATGCTACAAATAAG
1 TTAGATAATGCTACAAATAAG
*
346776 TTAGATGATGCTACAAATAAG
1 TTAGATAATGCTACAAATAAG
346797 GCTTTCATCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.45, C:0.10, G:0.17, T:0.29
Consensus pattern (21 bp):
TTAGATAATGCTACAAATAAG
Left flanking sequence: Indices 346255 -- 346754
TTCTAGTCTAGTTTGGACCAAAAAATGTGGTGGGTGAGCGAAAATAAGGGCCAAGACGCATAGTA
GCCAAGTGGTTGACCAGTGGTGAAACACACTGAAGAGAACCTTTTCTTAACGAATGGAACTTCGA
ATGTGTTGTACGCCAAGGTCGAATTAACCACAGCTGACGCAAAATTGCGGTCAAACAGATAGCAG
AACACCTCGAATAGAAATAACAACGGCCAACGGTCCGTTGCAGATTGAAAGTCGAAGGAATATAC
TACTTACTTGGGAACTAGTTGATCAAGAGGCCTAGTTTGATCGAACGTACCATCCTGAGGGATAG
TACGCAAGACCTCAGCTAGCCAATCATGGATTGGTCGTAAGAGCCGTTGATTAATGTAGTTCCCA
ATGGCAAATATACGTCTTTTCCCTCCACCCTCAATGGAACACCCAAGCCGACCCGTAACAGGAGG
AATGTTAAGGAAGGTCAGGGTAGGCGGCTCAAAAACCCTATTTAT
Right flanking sequence: Indices 346797 -- 347296
GCTTTCATCACCTGATTCGTCTATATCAGGTGCTAAAGGCTTGTTATTTATATGAACTATGATTA
TGAATCTAATCTATTAATACGCTTCGCTCCTATTAATGCGCTTCGCTTCGCTCGCTTCAGTCGGG
AAGTCACTCATTCAAACCTGCCTTCCCGTTTTTCAGATGGAAGTCCTCTTTCGTTTCTCGACGGT
GAAGTAAGACCAAGCTCATGAGCTTATTATCCTAGGTCGGAACAAGTTGATAGGATCCCCTTTTT
TACGTCCCCATGCCCCTCCCGTGTGGCGACATGGGGGCGCAAAAAGGAAAGAGAGGGATGGGCTT
TCTCTCGCTTTTGGCATAGTAGGCCTCCCCGTGGGAGGCCCGCAAGGGCTATTAGCTCAGTGGTA
GAGCGCGCCCCTGAGAATTGCGTCGTTGTGCCTGGGCTGTGAGGGCTCTCAGCCACATGGATAGT
TCAATGTGCTCATCAGCGCCTGACCCGGAGATGTGGATCATCCAA
Found at i:346894 original size:19 final size:19
Alignment explanation
Indices: 346872--346908 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
346862 TGAATCTAAT
346872 CTATTAATACGCTTCGCTC
1 CTATTAATACGCTTCGCTC
*
346891 CTATTAATGCGCTTCGCT
1 CTATTAATACGCTTCGCT
346909 TCGCTCGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.19, C:0.30, G:0.14, T:0.38
Consensus pattern (19 bp):
CTATTAATACGCTTCGCTC
Left flanking sequence: Indices 346372 -- 346871
AATGGAACTTCGAATGTGTTGTACGCCAAGGTCGAATTAACCACAGCTGACGCAAAATTGCGGTC
AAACAGATAGCAGAACACCTCGAATAGAAATAACAACGGCCAACGGTCCGTTGCAGATTGAAAGT
CGAAGGAATATACTACTTACTTGGGAACTAGTTGATCAAGAGGCCTAGTTTGATCGAACGTACCA
TCCTGAGGGATAGTACGCAAGACCTCAGCTAGCCAATCATGGATTGGTCGTAAGAGCCGTTGATT
AATGTAGTTCCCAATGGCAAATATACGTCTTTTCCCTCCACCCTCAATGGAACACCCAAGCCGAC
CCGTAACAGGAGGAATGTTAAGGAAGGTCAGGGTAGGCGGCTCAAAAACCCTATTTATTTAGATA
ATGCTACAAATAAGTTAGATGATGCTACAAATAAGGCTTTCATCACCTGATTCGTCTATATCAGG
TGCTAAAGGCTTGTTATTTATATGAACTATGATTATGAATCTAAT
Right flanking sequence: Indices 346909 -- 347408
TCGCTCGCTTCAGTCGGGAAGTCACTCATTCAAACCTGCCTTCCCGTTTTTCAGATGGAAGTCCT
CTTTCGTTTCTCGACGGTGAAGTAAGACCAAGCTCATGAGCTTATTATCCTAGGTCGGAACAAGT
TGATAGGATCCCCTTTTTTACGTCCCCATGCCCCTCCCGTGTGGCGACATGGGGGCGCAAAAAGG
AAAGAGAGGGATGGGCTTTCTCTCGCTTTTGGCATAGTAGGCCTCCCCGTGGGAGGCCCGCAAGG
GCTATTAGCTCAGTGGTAGAGCGCGCCCCTGAGAATTGCGTCGTTGTGCCTGGGCTGTGAGGGCT
CTCAGCCACATGGATAGTTCAATGTGCTCATCAGCGCCTGACCCGGAGATGTGGATCATCCAAGG
CACATTAGCATGGCGTACTCCTCCTGTTCGAACCGGAGTTTGAAACCAAACTTCTCCTCAGGAGG
ATAGATGGGGCGATTCAGGTGAGATCCAATGTAGATCCAACTTTC
Found at i:349981 original size:44 final size:44
Alignment explanation
Indices: 349918--350006 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
349908 AAAATCTCCC
349918 CAAATCACACTGCCTGTATGAACAAACAAACTTTGCACAACCAG
1 CAAATCACACTGCCTGTATGAACAAACAAACTTTGCACAACCAG
349962 CAAATCACACTGCCTGTATGAACAAACAAACTTTGCACAACCAG
1 CAAATCACACTGCCTGTATGAACAAACAAACTTTGCACAACCAG
350006 C
1 C
350007 TTACGTAGAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.40, C:0.30, G:0.11, T:0.18
Consensus pattern (44 bp):
CAAATCACACTGCCTGTATGAACAAACAAACTTTGCACAACCAG
Left flanking sequence: Indices 349418 -- 349917
GAAAGTCACTACTTTTTTAAATTTCTTCTAGTGGTTTTCCCGGTCACCGAGGGTGACAGCCCGCA
CAATGAGTGCTTGCTGCTCCTCCTGCAGCACTTGCAGCCTCCTCTGCTTTTCCCTTATGTTCTCT
CTGGCAGCGCCAATGCGTTCTTCTGCCTCTGCAGGATCTCTTGCTCTAACATTTCTCAAAAAGAG
GTTTAGCACTCTACGACGCTCTTGAATTTCATTTTGAAGTTGCCCCACTTCGGCAGCAATTGCAG
AAAGCCTGTTTGTAACAGCCATAGCCATACGTGCTATTACTCAATTTCTTTGATTTGAATTTGAT
GAAGACACTTATCGAGCCTCCATTTATAGAGTGGTAGAGGAATCTCGCCATGCGTCACGAATTAG
ATTAGATGGCAGGCACAATTCTTACTAGTTCTCCGCACTACTTTTCTGCAGTTGAAGACTATCAT
GCCTTTTTAATGAAAAACTGGCTGGCTACCTAAACAAAATCTCCC
Right flanking sequence: Indices 350007 -- 350506
TTACGTAGAAAAGATTCCATGCCAATAGACTCGTGACATCCATGTACTGAGTCGTCAAATGAGCC
ACGTTAAGAAAGCCCAAGCTTATACGCATTGGCCCACAGGGTGTCCCAAGAGGGCCCGAATGAAA
GACCCAAGCTTACATGAACCATCAAAGAAAGTCCTACAAATGAAGACTTGGGCCTGTCAAGCCTG
CTTTCCTCGATGGAAGCCCACAGAAGGGCCAAAACACAACAAGCCTACCCATCATCAAAGCAAGC
CCAAGCCCATGCAAGAAGGACCTCATTGTCATGGAAGCCCTTTCCTTACTCCTCAATATAGTCTA
TGAGAACGTTTTTCTGACCAACTCTCATGGCTTTAGGAGGGGGCGGGCCCCTAAGCTAGCTCTCG
CCTTCTTCAGGATTTGCTCCTAAATTCCAGCTATGATCGACCTTTCGAATGAATGAAGTTAGAAG
CTAAGGGCTTTGGTCGAGTGCTTTGCCAATCATTCTTCTATGTAC
Found at i:400621 original size:11 final size:12
Alignment explanation
Indices: 400591--400623 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
400581 TCCTCGTCTC
*
400591 GGTAGGGGTAGG
1 GGTAGGGGTGGG
400603 GGTAGGGGTGGG
1 GGTAGGGGTGGG
400615 GGT-GGGGTG
1 GGTAGGGGTG
400624 AAGGAAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.09, C:0.00, G:0.73, T:0.18
Consensus pattern (12 bp):
GGTAGGGGTGGG
Left flanking sequence: Indices 400091 -- 400590
CCTTTGTCAACTCGAAGGAAGTAGCAGACTAACAGCAAGGGCAGGGCTGTTCTCCTTTGTCAACT
CCTTGCTTGTGTCGTTGACAAAGTCAACCGAGCCGGAACAAACCGTAACGACATAATCCAAAGGT
TGCCTCTGTCAACGCAACGCTACTGACGGACCGGGGCGAGCGGAATTCAGTAGAGGCTCGAAGAG
GGGCTTACTGACGCGAAGGGCCGAAGGCGGCTTTGCTATCCATCCTACTATACCACCGAAGGGCG
GCAGGCAAAGCTGCAAGGAGATAGTGCGGCTTTCGTCTGTTCTCATGGCAGAGTGAGGGGCGCTA
TCCATCCGCCAATAGAGCCGGCTTTTAGTGAAGATCCGCTCATGCAGCATGAGGGGCGGCAAAAG
GCGGCTTTGCTCATGAGTTAGCGGTCAAGCGGAAAAGGACCTGCTGGCTTCTTTTCTTTCCGGAG
CAGAGCTGCCTTGCTCGCAGCTCACAGCTCACAGCTCCTCGTCTC
Right flanking sequence: Indices 400624 -- 401123
AAGGAAAAATCAGAAGCAAGTCTTGAGGGAGTAAAGAGCCACCGTTAGGTGGTTCTGAGCCAAGT
GCGATCGATTGTCCTTCCTTTATAGATTGAACTACCGTAACTCCACTCAACCAACAAAGTCAATT
CAATACTCAAAGTTGAGTTACCGTACATTATCAATATCTATCAAAACTGACGGGGGAAGAGTTTC
TACTGAAGCCGAAAGGTATCCTAAAGGAATGGTAGCACCACAATCCACCCAGACGCGGCCATCGT
AAATGGTTCGTGCGACGGCGGCGGAGGCAGGTTCGGGATAATCTATTCAATCTTCTTCTTTTCTA
TCTCTTTTCTCTCTTTTTCTGAATTTTCCTCTTCCCCGCTTCTCCCATATTCATTATCCCTCTCG
CCTAAATGAAATGGGATGAACTTCTCCCTCTTGAAACATTTCCAGAAACTCGAGTCTGACTTCCT
CTTCTTCCGGCAGCATTTCTCCTTTGAGCGGCATTTCCTCTTCTT
Found at i:437537 original size:22 final size:22
Alignment explanation
Indices: 437512--437556 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
437502 AGCGCCAACG
437512 CAGCAAGCAACGGCTTTTCAGC
1 CAGCAAGCAACGGCTTTTCAGC
437534 CAGCAAGCAACGGCTTTTCAGC
1 CAGCAAGCAACGGCTTTTCAGC
437556 C
1 C
437557 GTTGCGCGCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.27, C:0.33, G:0.22, T:0.18
Consensus pattern (22 bp):
CAGCAAGCAACGGCTTTTCAGC
Left flanking sequence: Indices 437012 -- 437511
TCCAAGCGAGTCGGAAACACGTTTAGCAGACAGATCAGGAAAGAGCTTTCAAACAAAGAAAGAGT
ACCGCACTTGCCTTTAGAGACCGACAACCTTACTGATTACGTTCTTTCACTACTTTTAGCTTGGC
TTGACTTGACTACCGCCCTAAGCACAAGGAATAAAAGAAAGAAGTCAGGCAAGTGGCTTTAGAGA
AAACCACTTCTGCTGTTCCGGGTTACAGGTACATGGAACTAGGCGTCGGCTTATAGAAAACTTCT
TGTGCCGGTACGGGCTCGGTAGCTAGCCAAGTCAGGTAGGCTCTAAGTAGAATATCTCCTTTGCG
GTTGGAGATGGCGGAGATCAATAAGAGAATTCTGGTAAGCGGTTCCCTTCTCTCTTTGGCTTTGG
TAAACTAAACTCTCTCTTGTTGTTTTATCGTCAAAAGATAGAGTGGAAGTGCCGGTAGTAGGCTT
TAGGGCTTTGGAATCAATTCCATCTGAAAAACGTAAGCGCCAACG
Right flanking sequence: Indices 437557 -- 438056
GTTGCGCGCTCAGTAGTTTTGAAGCTGGCATTCCTAATCGCCCTATCTAGTAAGGCACTTTGATT
TTTCAGGGCAAGATAAGGTCTCACTAACCGGAGGGAGAGTGACGGAAGGCGACGGCAGCTAGGAA
AGACAGGAAGGTCAGATATTAACGACTAGTTTTGTCTTCAAGCGGAAGCCGGAAGCCGAAGCCGT
CGAAAGGGGAAGGGCTCTATGGGGGACAGGAAGACCCATGAGAAAGAGACGTCCAAGAAAGGCCA
TGATGCTGACGACTGGCCCTAAGAATTCTGGATGGAGGGTCTTTCATATTCTTATGCAACGGCGC
GCATCGAGCCTGCCCACAAAAGCAATCGTTGAACACGTTGCAGGCCCAATCATCAGGAGAAGAGC
CCAGGATGGGGGCTTTAAGTAAGGCTGCTAAATGCTATTAAGGGGCAGACGGAGGTAGCAAAGCC
CCAAGCTCGGGAACTCATGTATATTGATGTGTGCATCAATGGCAA
Found at i:441141 original size:17 final size:17
Alignment explanation
Indices: 441119--441161 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
441109 GGCAAAGACT
*
441119 TTATAGCTAATTACTCA
1 TTATAGCTAATCACTCA
* *
441136 TTATAGCTAATCATTCT
1 TTATAGCTAATCACTCA
441153 TTATAGCTA
1 TTATAGCTA
441162 GCCTGGTTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.33, C:0.16, G:0.07, T:0.44
Consensus pattern (17 bp):
TTATAGCTAATCACTCA
Left flanking sequence: Indices 440619 -- 441118
GAAATGAAAAGTCTCTTATATACGTAAAAAAACCAACGGGAGGGTGGGAATAAGAACCTTCCTTC
AGTCATTAAATAAATATCGGAGTCAGAATGTATAAGCTGTAAACTTATTCTCCCCAACCCCACCC
TATCCGTTCCTAGGCCGTCGAATTTCTTTCTCAATTCAACATTGATAGGGGCTGGGAAAAAAGCT
CAACGGGGAAACTCCTTGTTCTATTTAGTTAATGGGTCATCAGTACGAGTTGGAGGATCTTACGG
TTACGGAGAATAGGCATATTGAAGAGCAGGTGTAGCGGGCCAGTTTAGAGCTAACAGTTGGAATT
GGAAGAGCTGCAAAAGCTACGAAAGCAAGTTCTTACGGAGAAGTCTATGATATTGGTGTACCCGC
AATAGAGATAGTTTAGTCATGTGGGGGAGCCCCAACAGAAGAATCGAATCCTCCTTTAGTGCCAA
CCCTGATTTCCAAGCATTTATAACTGACGCATTGGGGCAAAGACT
Right flanking sequence: Indices 441162 -- 441661
GCCTGGTTGAGCTCGAATCATTCTTTATAGCGAAGGTTGTGAGCCACTTATCGGGAGGTTTGGTA
ATTTATACTTGATGGCGGATAGAAAGATCTTCGCTTTATTCGGACAGTGAGCTGGGTGGGATAGA
TATGCAAGGCCGTATATTCTAGCAGTACGAGTGGGACCAACCCTTTCTAACGAATGAATCAAGTA
TACGAGAGCTAATTCGAGTGCTAAGCTTTCGCTATCGGTAATTCAGTGAAACCATCTGAGCCATC
TCCCTCAAATCCATCTCTATTTATAGCTCACTGGGAACATAGTACGACCGGGCACACTATCACTC
TTGCATTGGGTTGTGGATTGGCTTTACTAGATCGATAAGCATTAGGAGTAAAGGTGGATCCGTCA
AAGTGTATTCGTTAGGGCCTCACTATGCCCGGGATAAGAAGCTGGAAAAGCAACGATATTGATAG
GGTCTCATCAAACGGATCAATCATTACTCGAGGTGGACAAGCTCT
Found at i:482904 original size:21 final size:21
Alignment explanation
Indices: 482878--482921 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
482868 GGCAAACGCC
482878 TACGAAAAGATCGCTTGGATT
1 TACGAAAAGATCGCTTGGATT
* *
482899 TACGAAAGGGTCGCTTGGATT
1 TACGAAAAGATCGCTTGGATT
482920 TA
1 TA
482922 TCCATGGTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.30
Consensus pattern (21 bp):
TACGAAAAGATCGCTTGGATT
Left flanking sequence: Indices 482378 -- 482877
ATAGTTATAGTCGATTAATACACGATCTGTACAAGAGGCAGTTGCTTCTTAATCGTAAAATACCT
GCACAAATAGCTATATCCAATAGGAATTGTCTTTACATGATTTCCAATGAGATCATCAAATAAGG
AGATTGGAAGGAATTCACCGGAATGATTTAAACGGAGTTCCCCGGAGAATGACCTCCGGGAAGGT
AGAGTAGAAATGAATATGATAAGATAAGTAGTAGGAATGAACGAACACGTTTCAAAAAAGAAAAT
CTTTCTTCTTCTCCCATTCTTTTTTTTATTATATTACGACGCAACAATCAAATATCTCGGCTTTT
TCGAACAAAACATCAATCTGATTTTGAGTTCCAATTAGAGTTGTTTTGATTCAATTGAGGAGTAG
GCCGTATATGGATTTCTGGTTCTAGGACCAGTAGTTCTAGGGATCGACTCGGTTTTCTCAAAATT
TTTATCATTATTAAGAAATCGATCCCCCGATTGGGGGCAAACGCC
Right flanking sequence: Indices 482922 -- 483421
TCCATGGTTTATTCCTGATCTCTAAAATCCTATTTCTTCATTCATTTCGGATCCGACCGAAATAG
GACTTTTATATATATATATCTAATTTCTTCCTGTTCCTTGGAAGGGTGGTACACGCGTTCCGTTC
GATCTATTTCTTTATCTCCCCATGAATCGTATGCTTGTAACAAACAGAATTTTATCAATTCCAAT
CGACTAGGTGTATTGTGTCGATTCTTTTGAGTAATATATCTGGAAGTGCCCCGCGATTCTTTATT
GAAATCATTTCGGACACAACTGGTACATTGCAAAATAACTATTCCTCTGACATCTTTACCCTGGG
CCATGAACCTCCTTTTGATTTTTGATTCACTCAATTCTTCTATTTTCGATCCGAACCGAAGAAGA
AGAAAGGAACGAAAAATAAATAGAAGAGAAGTTGCTAACTCGAAATCACATTATGAAAGATTTCG
TTGCAATCAATATAGTAATAATAAGTCATACAATTCTTTCTAACT
Found at i:491892 original size:26 final size:26
Alignment explanation
Indices: 491866--491915 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
491856 TGCTGCTTCA
491866 AAGCCGTTGCTTGTT-GCTAGCGCTC
1 AAGCCGTTGCTTGTTCGCTAGCGCTC
* *
491891 AATCCGTTGCTTGTTCGTTAGCGCT
1 AAGCCGTTGCTTGTTCGCTAGCGCT
491916 GCCGGCTTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.12, C:0.26, G:0.26, T:0.36
Consensus pattern (26 bp):
AAGCCGTTGCTTGTTCGCTAGCGCTC
Left flanking sequence: Indices 491366 -- 491865
GGTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCTGGGCCACACACGTGCTACAATGGCAA
TTACAATGGGAAGCAAGGCTGTAAGGCGGAGCGAATCCGGAAAGATTGCCTCAGTTCGGATTGTT
CTCTGCAACTCGGGAACATGAAGTTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAAT
ATGTACCCGGGCCCTGTACACACCGCCCGTCACACCCTGGGAATTGGTTTCGCCCGAAGCATCGG
ACCAATGATCACCCATGACTTCTGTGTACCACTAGTGCCACAGACGGCTTTTGGTGGTCTTATTG
GCGCATACCACGGTGGGGTCTTCGACTGGGGTGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTG
TGGCTGGATTGAATCCTTCGCGATGGAAATGCCCTATTCCGCAAGCAACGGCGAAAAGCCCAGCA
AACGGAGGAGCAAGTGAAGGCAGCAAGAAAACGGCTGCTGCTTCA
Right flanking sequence: Indices 491916 -- 492415
GCCGGCTTTCTTGCTCGTTGCTTGTTGCTAGCTTCACGCAGTCGTTTTTCAGCTGGTTAGGGCTT
TTCTACGCTGGGGTAGCTTGCTTCCACTGGTGGCGGGCGGGCGAAGGGTCCAAAGGACACGTAGC
CGGGGGCGAGTCACAAAATCCAATCCTTTTTTCCTTCTTGTTCATCAATCGGAAATCAAGACAAA
CCGGGCACTACGGTGAGACGTGAAAACACCCGATCCCATTCCGACCTCGATATGTGGAATCGTCT
TGCGCCATATGTACTGAGATTGTTCGGGAGACATGGTCAAAGCCCGGTGCGAAAAGGTCTACTCA
ATAGAACAGGAAGAGGAGTTTTTTTTGCTGTCAAAGTGATGTTCCAAATGAAGAAGATTCTTTCG
AATTCCCCGTTTCTTCCGATCCTTCTTTCAGTTCTTTTTCAGCTCCTTGCGGTGCTAGTGATCAA
CTGAGTCTTATGAAAAGTCGGTGTTCACGTGCAACTACCTTTAAT
Found at i:510235 original size:18 final size:17
Alignment explanation
Indices: 510201--510239 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
510191 CCGGTGGCGG
510201 GTGCTCCACCATGGATC
1 GTGCTCCACCATGGATC
* *
510218 GTGCTTCCACTATTGATC
1 GTGC-TCCACCATGGATC
510236 GTGC
1 GTGC
510240 ATCGATCGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.15, C:0.31, G:0.23, T:0.31
Consensus pattern (17 bp):
GTGCTCCACCATGGATC
Left flanking sequence: Indices 509701 -- 510200
TGGGATGGAGAGAAGGTGGAACTAGCACGGGCAAGAATCACCGGGAGAGGGGGAAAGACTCTCGA
CAAACCCTCTCCCTTCATAAGGTCGAGTGGCTCCGCCCCAGATATTGAATAACCTGTCCCAGACC
CTCTCTCTAGTAGGTGACTCCTTTTCTAGTTCGACCTTCTGCTAAGAATCCCCTAATTCATCCTT
TTCCTCTAAACCAGATGCCGAATCGGGGGAAGAATAGAAATAAGAAGAAGTAGGAGTCTCTATCC
ATAATAGACTCCTCTAATTGAGGGATAGATAGTATTGGTTGTGGATAGGCGATGCTTGAAGTTCA
TCCGTTTCAACGTTCATTAGCCGGGCGGGGATTGAAGAAAAGAATTGGGGGGGGTTAGGGGGGGG
AAGAGGTCACCTCCCCCTCTTGATTGGAAAGGCGGTACGAGAAGAAGAGGTTCCACTGCGGATGC
TGCCGACCGAACAACAACTCTGGAGTATCCTTTCCCCGGTGGCGG
Right flanking sequence: Indices 510240 -- 510739
ATCGATCGAATGACCAACATCAGATTCAAAGGGAGGCCTGGTTAGGGGCATTCGGAGGCCCAACT
GCTGATTCGGAAGGCAGGAGGAGTTCATCTGCTTCGGACGGGGGATGCATAAAGATCATTAGCGG
GTAGGGCATCCTCAGCAGGTTATGAAAGATCTGTATCAAATGTTGGTAACTCGACCGAAGCGGGA
AGATAGGCTTTTTCATGACCCACCTCCCTGCCGGAAGTCGCAAGTCCAAAAGCGTACGATCTGCT
GATTCATTATCCCTTTCTCCCGCCTTAACCTTGCCTTCTTCTCGCGATCATCCCTCATCACTTCC
ACCAGCGTATTCCATTCCAGCAGACGAGACGATCGATCTTATTCCTTTCACCACTAGGGGATCTA
GACACCTATAGGCTTGACTTTACTCCGCCCAAGTGCTTGCTGGCTTCAAAGCTTATTAGTAAAAC
GCGCGTTGGCCTTTGACTATATAAGCGTTTTGAAGGGGGGGCGAG
Found at i:513326 original size:12 final size:12
Alignment explanation
Indices: 513309--513333 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
513299 CCGGAGCGGG
513309 ACTTCTTTGGGA
1 ACTTCTTTGGGA
513321 ACTTCTTTGGGA
1 ACTTCTTTGGGA
513333 A
1 A
513334 AAAGAACTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.16, G:0.24, T:0.40
Consensus pattern (12 bp):
ACTTCTTTGGGA
Left flanking sequence: Indices 512809 -- 513308
TACCTTCTCCTTACCCATGAGGTTCCAACATTTGATCCTTAATTGACCTAGGAGTTGTTCCCGGG
CATCCTCAAGAAATAGTTCCTTATACACCCCAACCCCATCCCTTGGAAAGAAAAAGGTAGCACCG
AAGAAAGGAAAGAGCGAGATGGTGGTTTTTGTTGTTCCCGCGAAGCGAAGATCATTCGCCAAGCG
AATGAAGTGGGTCAACCTCTTTTTGGCTTCGGCCAAACACTTTTTCTCGCTGGTCGAGCTTTCTA
CAAAAAAACCGATGCGAGAGCGTATTCTCTTATCTAAGCTTCCTCCCTGTTCATTCGCTCCCCCC
ATCGTAGATGGTTCAGCCACGCCCGGTGCCACGAAATGATTGAGAACTACGACGGGGTCGAAATG
CATTTTTGTCTTTGTATTCCATAAGTATTGCATGACCGAATAATTCAAGGAGGGGCGCACAGCAG
GGAGGGTCCTTTTAAGTAGATGACTCGTCGGGCCGCCGGAGCGGG
Right flanking sequence: Indices 513334 -- 513833
AAAGAACTTGAATAACTTCGTTTTTCTGGAGGAGTCGTCATTTTCTATCAGGAACGCTATGTCAT
TTACAACCCCGGCGTATTTCGGATGCTTGAAGGCCCCGCTGACCCGAAGTGATTTAGAAAGATTC
TTCTTTCTCGATGGTGATCGGTCATGGTATCCATAGCGTTGCTTCTTTTTCGGCCAAATCCTGAT
TTCGTTTTGCTTCTCCCGGTCGTCGAGCCTGATCGACTCGACTCTTTTCCCTGCCCCCCGGCCTC
TCACGTTTCCGGGTCTTGATTTGTCGCGTCGTTTCAGTCGTCGTGGTCGACGGGGAAGAAAGAAA
TGAATGAATGTCCTTTTGGGAAAATGTAGAATAATACACCTACCGAGACGAAAGCCAAAGGTGAG
TCTCGTAGGTGGACGTATCGAACCGAAATAAGATCTCAGATTGACATCTTGATACACTGATTTAC
CATAATAATAAATAGAGTCAATGGTGACTCCGCCGTGGGAAGAGC
Found at i:526376 original size:13 final size:13
Alignment explanation
Indices: 526358--526396 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
526348 ACTACAGGAG
526358 CAACTCATTCAGT
1 CAACTCATTCAGT
***
526371 CAACTCAGGAAGT
1 CAACTCATTCAGT
526384 CAACTCATTCAGT
1 CAACTCATTCAGT
526397 TTACGGAATG
Statistics
Matches: 20, Mismatches: 6, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (13 bp):
CAACTCATTCAGT
Left flanking sequence: Indices 525858 -- 526357
CTTCGGTGACCTAGGAGGGATAGGAGGATCGGTCGTATGCGTGGCGTGGCCTCTCGCTTCTCCCG
CGTGCATTCTACAAGCAAGAGCATCCAAGCGAGTATACGTTCCCGTTCCCGTGTCCGCTAAGAGA
GGAGTTGGTGATTGTCTTGATCCTTTGCACTAAGGCGGTTAGTGATGATTGGCATGGGGGGTCTG
CTAATCACGAGGATGAGACTGGACTTCCCTTCCTTTTCCGCTGCATAGCTAAGGAGGTTCGGTTT
CGTTACTGTCTTTAGAGTTCTGTGATCGGGCTCTGGTTCAGTTCCGTTCACCCTACTCCTCTCAT
TTGTGTTGTTGCTATGTGTTACATCGTCCCGACCTTTGCTTTGGATTGATCGGTGGAGTAGTCAA
CTCTCCTGATGGAGTGTCTATTTCACATGGCAACGTGACTTGTGAGTTCTATGTCGGTCGAGACG
AAAAACCGAGCGTCAAGTGTAGTCTACGGAGCTTGACTACAGGAG
Right flanking sequence: Indices 526397 -- 526896
TTACGGAATGAGTTAAGGAAACTAAATGAGTCTTAAAGCAGCTCGTGAAGTCGGAGTCTCAACTA
CCACTACTATGCTACCATACCACACAACTACTATACCACTACCACTCCACGAGTGGATTAGTTGA
GTGACTAGACTTAGACTCTCTTTCTTTGATATCAATCACTAAACTCAACAAAGTAGCAAAAATCA
TCAGAGAAGAGAGGGAGTACGCCCGGTTCACCAGGTTCTACCACTGCAGGGCCCAATCATACTCA
AAATCAGAGTTTGATCCTGGCTCAGAACGAACGCTAGCTATATGCTTAACACATGCAAGTCGAAC
GTTGTTTTCGGGGTCGAACCACTATCCTTTTGAAGCGGATAGTTCACAGTGCTCATTATCTTTCT
TTTAGGAAATCATTTCCAAAAAATGGAATTATGGGAGGTAGTGCTGACTTTCCTTTCCCAAACTG
GGGAAGTGCTTCCTAACATGCAGCAAAACCCTCCTGCGAATCCCC
Found at i:537530 original size:18 final size:18
Alignment explanation
Indices: 537507--537546 Score: 80
Period size: 18 Copynumber: 2.2 Consensus size: 18
537497 TCAGTTTACT
537507 AGGAAGAGAAGAATCAAA
1 AGGAAGAGAAGAATCAAA
537525 AGGAAGAGAAGAATCAAA
1 AGGAAGAGAAGAATCAAA
537543 AGGA
1 AGGA
537547 TCGAACTACC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.60, C:0.05, G:0.30, T:0.05
Consensus pattern (18 bp):
AGGAAGAGAAGAATCAAA
Left flanking sequence: Indices 537007 -- 537506
ATGGAATGGTAAGCATTACTCATTTGAAAGTGTCCCACGGTGATCTAATCTCTTTTCAAGAAAAT
GACGCGAGAACCTGCGGTGAAGAAATAAGGAGATCTTTCTATATCGACATATCAGTTGAAAAAAT
CATAGGCAAATTCCTGCCGGTCAGAATGTGGAGAAGAACCAAAACAGAATGGTTCCGCCTACTCA
AAACTCAGAGGGGGTGCCGCCTACTACTCAAATCCCGGTTTTTGCAACAGTTGCGTTCTTCTATG
CAAGAAGAAGACTTAGAAAGAACAAAGAAGTTTGGATCCGCAAAAGTATGCTTAGGCAGTTCCTT
CGCGGAGCACAACAGAATGAAGAGGAATTTGTATCATTTCAAATTCATATTCTTATCGAAGAGAA
GGAACGAGAAAAACCGAAATCTTCCTACTCGAACAAGAAGTCCTGTAGTTCAAAACTCATATATA
TATAGTAATTCGACCTATTGCTCCGGATCCCCCCATCAGTTTACT
Right flanking sequence: Indices 537547 -- 538046
TCGAACTACCTACTCATTATTCGGAGGTGAATCATAGAACACCAAAAGCTGTGGTATCTTATGGA
CCTAACATAGGTCACATCCCTCACGACATAAGATTGAAAGATCCAAACCTTCCTCTTCGGAGCGG
AAACGGACGTGGCCAAAACATATAAGAAAAGATCGGCGTAGTCGCTCATAGGGACATATCTATCC
GGAAAGAGGATAGTCTAGATCGATTCATAGATAGATCTCTCTCCATATAGATAGGTATCTCCGTG
GATAGAGATAAAGATAGGGATCCATCTAGATCTTGAGAAATTTATTTATATATTTTGAGATTTTC
CGTCGATTCTGATTGATTGCCTTTTTGACGACGACGTTTTAAATCTTAATGAAGGCAAGGAAACA
TCGTTTTTCAATTATGACTTGCTTGGTCGGAGCGTAGACGAGCGAGCAGAGCCCAGGAAACAGGG
AAGCCCGTCATAGAGCAGTCGACTAGAAGTAGAAGACTGCTGGCC
Found at i:543972 original size:16 final size:16
Alignment explanation
Indices: 543953--543986 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
543943 TAAATAAAAT
543953 TATATATATAGATTTA
1 TATATATATAGATTTA
*
543969 TATATATATATATTTA
1 TATATATATAGATTTA
543985 TA
1 TA
543987 AATAAATATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (16 bp):
TATATATATAGATTTA
Left flanking sequence: Indices 543453 -- 543952
AGAACCCCATTTCGACCAAGTTGCGGAACCGGAAAAAAGAAGCGGTTTTTCGCACAGCTTGCTCA
TAGTGCAGGTCCCACTTGTATATCGTATTTGGCCGAAGAAGCATCGGACAGGTCGGAGTTCCTAC
CTTCTTGGGACTCCATGGACCAAGATCTGCTTTCATTATATGGGCAATACCGATCTACTTTAGTA
GATCATATGGATGTAGAAAAAGCTTCTGATTTGGAGGAAACATCTCTTTTCCATTTCCATTTACC
CAGTTCATATCTTTGTTTCGTGTGTTCCCGGGAGGAATTCGATCTCTTCAATCTCGGGATACCAC
CTAAATAACTGCGGCCAGAGAGTCAAATAGGTCGGGAAGAAACAGTCTGAGGTCGGGTCGGACGA
CATACATCCATCGTCGGTTGGTCCCACCACTAGAGATTGGACATCTATAGAATCTTTCTTCTAAA
AAAAAAAAGAGATTCTTTTGATTTATTTCCATTTATAAATAAAAT
Right flanking sequence: Indices 543987 -- 544486
AATAAATATATACAGAGGAAGACGAAACACAACGAAAGAGGGAGGACGAAGAAGAAAGGAGAGTG
ATCCATCTGAAGAGTAATAACATGACATGACGAGTCGTAGTTAAAGACCGTAGGATATCGTAATT
AAGGCATCACGTCATTTTGATTCTTTATAATTCTTTGATATCGTGACGTCTAGGGCTAAGTTCCA
CAATAGTGGGCTTCATCAGAACTACCATCGGTTGAGAGTAGTCACGTACTTCTAATAATACCTTG
GTCTAGGTTTGAGATTCATCTCTTCGCTCGGCCGAAAATTTGCATTTCATATTTCCCCGGCCGAT
CTGAAAACTTTCGTATGCACTCGCTTACTATCTCAAAGGGATAAAGGAATCATAGCTTTACACTA
ATTCACACTTTCACTGATTAAAACATCAATATGCACTATTTCTTACCAAATATGAGTATATGGAG
ATGGGTGTTGACTGGGACGTGTCTCTTCCCACGGGATCCGCTCCA
Found at i:543995 original size:14 final size:15
Alignment explanation
Indices: 543941--543995 Score: 53
Period size: 14 Copynumber: 3.9 Consensus size: 15
543931 TATTTCCATT
543941 TATAAATAAA-ATTA
1 TATAAATAAATATTA
* *
543955 TATATATAGAT-TTA
1 TATAAATAAATATTA
* *
543969 TATATATATATATT-
1 TATAAATAAATATTA
543983 TATAAATAAATAT
1 TATAAATAAATAT
543996 ATACAGAGGA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
14 32 0.94
15 2 0.06
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (15 bp):
TATAAATAAATATTA
Left flanking sequence: Indices 543441 -- 543940
TGGTTTCCCGGTAGAACCCCATTTCGACCAAGTTGCGGAACCGGAAAAAAGAAGCGGTTTTTCGC
ACAGCTTGCTCATAGTGCAGGTCCCACTTGTATATCGTATTTGGCCGAAGAAGCATCGGACAGGT
CGGAGTTCCTACCTTCTTGGGACTCCATGGACCAAGATCTGCTTTCATTATATGGGCAATACCGA
TCTACTTTAGTAGATCATATGGATGTAGAAAAAGCTTCTGATTTGGAGGAAACATCTCTTTTCCA
TTTCCATTTACCCAGTTCATATCTTTGTTTCGTGTGTTCCCGGGAGGAATTCGATCTCTTCAATC
TCGGGATACCACCTAAATAACTGCGGCCAGAGAGTCAAATAGGTCGGGAAGAAACAGTCTGAGGT
CGGGTCGGACGACATACATCCATCGTCGGTTGGTCCCACCACTAGAGATTGGACATCTATAGAAT
CTTTCTTCTAAAAAAAAAAAGAGATTCTTTTGATTTATTTCCATT
Right flanking sequence: Indices 543996 -- 544495
ATACAGAGGAAGACGAAACACAACGAAAGAGGGAGGACGAAGAAGAAAGGAGAGTGATCCATCTG
AAGAGTAATAACATGACATGACGAGTCGTAGTTAAAGACCGTAGGATATCGTAATTAAGGCATCA
CGTCATTTTGATTCTTTATAATTCTTTGATATCGTGACGTCTAGGGCTAAGTTCCACAATAGTGG
GCTTCATCAGAACTACCATCGGTTGAGAGTAGTCACGTACTTCTAATAATACCTTGGTCTAGGTT
TGAGATTCATCTCTTCGCTCGGCCGAAAATTTGCATTTCATATTTCCCCGGCCGATCTGAAAACT
TTCGTATGCACTCGCTTACTATCTCAAAGGGATAAAGGAATCATAGCTTTACACTAATTCACACT
TTCACTGATTAAAACATCAATATGCACTATTTCTTACCAAATATGAGTATATGGAGATGGGTGTT
GACTGGGACGTGTCTCTTCCCACGGGATCCGCTCCAATCCCTCCG
Found at i:543995 original size:16 final size:16
Alignment explanation
Indices: 543964--543997 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
543954 ATATATATAG
* *
543964 ATTTATATATATATAT
1 ATTTATAAATAAATAT
543980 ATTTATAAATAAATAT
1 ATTTATAAATAAATAT
543996 AT
1 AT
543998 ACAGAGGAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
ATTTATAAATAAATAT
Left flanking sequence: Indices 543464 -- 543963
TCGACCAAGTTGCGGAACCGGAAAAAAGAAGCGGTTTTTCGCACAGCTTGCTCATAGTGCAGGTC
CCACTTGTATATCGTATTTGGCCGAAGAAGCATCGGACAGGTCGGAGTTCCTACCTTCTTGGGAC
TCCATGGACCAAGATCTGCTTTCATTATATGGGCAATACCGATCTACTTTAGTAGATCATATGGA
TGTAGAAAAAGCTTCTGATTTGGAGGAAACATCTCTTTTCCATTTCCATTTACCCAGTTCATATC
TTTGTTTCGTGTGTTCCCGGGAGGAATTCGATCTCTTCAATCTCGGGATACCACCTAAATAACTG
CGGCCAGAGAGTCAAATAGGTCGGGAAGAAACAGTCTGAGGTCGGGTCGGACGACATACATCCAT
CGTCGGTTGGTCCCACCACTAGAGATTGGACATCTATAGAATCTTTCTTCTAAAAAAAAAAAGAG
ATTCTTTTGATTTATTTCCATTTATAAATAAAATTATATATATAG
Right flanking sequence: Indices 543998 -- 544497
ACAGAGGAAGACGAAACACAACGAAAGAGGGAGGACGAAGAAGAAAGGAGAGTGATCCATCTGAA
GAGTAATAACATGACATGACGAGTCGTAGTTAAAGACCGTAGGATATCGTAATTAAGGCATCACG
TCATTTTGATTCTTTATAATTCTTTGATATCGTGACGTCTAGGGCTAAGTTCCACAATAGTGGGC
TTCATCAGAACTACCATCGGTTGAGAGTAGTCACGTACTTCTAATAATACCTTGGTCTAGGTTTG
AGATTCATCTCTTCGCTCGGCCGAAAATTTGCATTTCATATTTCCCCGGCCGATCTGAAAACTTT
CGTATGCACTCGCTTACTATCTCAAAGGGATAAAGGAATCATAGCTTTACACTAATTCACACTTT
CACTGATTAAAACATCAATATGCACTATTTCTTACCAAATATGAGTATATGGAGATGGGTGTTGA
CTGGGACGTGTCTCTTCCCACGGGATCCGCTCCAATCCCTCCGGA
Done.