123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_045039
Parameters: 2 7 7 80 10 50 500
Length:  601574

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33504--33594	29	3.1	29	72	12	105	27	18	39	14	1.89
33488--33611	58	2.1	58	100	0	248	26	20	38	13	1.90
33518--33608	29	3.1	29	73	17	107	25	20	39	14	1.90
39890--39925	18	2.0	18	88	0	54	19	25	19	36	1.95
45489--45530	18	2.3	18	87	0	57	7	33	7	52	1.56
84374--84420	25	1.9	24	87	12	69	6	42	14	36	1.72
85883--86006	58	2.1	58	100	0	248	13	38	20	26	1.90
85906--86005	29	3.4	29	74	15	107	13	39	20	28	1.89
112403--112440	13	2.9	13	92	0	67	23	18	34	23	1.96
151804--151856	24	2.2	25	77	16	58	7	35	11	45	1.69
169132--169255	58	2.1	58	100	0	248	13	38	20	26	1.90
169155--169254	29	3.4	29	74	15	107	13	39	20	28	1.89
180958--181048	29	3.1	29	72	12	105	27	18	39	14	1.89
180942--181065	58	2.1	58	100	0	248	26	20	38	13	1.90
180972--181062	29	3.1	29	73	17	107	25	20	39	14	1.90
195703--195775	29	2.6	28	69	4	65	12	38	19	30	1.88
245506--245565	30	2.0	30	90	0	93	20	25	23	31	1.98
261474--261515	22	1.9	22	90	0	66	23	19	19	38	1.93
338373--338444	36	2.0	36	97	0	135	29	25	18	27	1.98
349667--349698	15	2.1	15	94	0	55	34	15	6	43	1.72
354019--354090	28	2.6	28	95	0	126	33	11	26	29	1.91
412188--412215	14	2.0	14	100	0	56	42	14	0	42	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
448061--448093	16	2.1	16	88	5	50	57	27	12	3	1.49
479654--479695	20	2.2	19	87	12	59	30	19	0	50	1.48
492414--492489	39	1.9	39	100	0	152	27	21	21	30	1.98
496120--496162	18	2.4	18	81	18	54	34	25	20	18	1.96
498494--498540	25	1.9	24	87	12	69	36	14	42	6	1.72
540956--541010	28	2.0	28	85	0	74	25	18	23	32	1.97
563762--563794	16	2.1	16	88	5	50	57	27	12	3	1.49
587930--587975	16	2.8	17	83	6	58	13	15	19	52	1.75
595866--595907	22	1.9	22	90	0	66	23	19	19	38	1.93

Tables:   1

The End!