Specifications
==============

Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt1/NC_039738.1/NC_039738/Repetitive_sequence/123.misa.ini"

Definement of microsatellites (unit size / minimum number of repeats):
(1/10) (2/6) (3/5) (4/5) (5/5) (6/5) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           722009
Total number of identified SSRs:                 70
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	54
2	15
3	1

Frequency of identified SSR motifs
----------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	total
A	-	-	-	-	-	13	11		1	1	26
C	-	-	-	-	-	2	1				3
T	-	-	-	-	-	21	3	1			25
AG	-	3									3
AT	-	5	1								6
CT	-	1									1
TA	-	4									4
TC	-	1									1
CTT	1										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	total
A/T	-	-	-	-	-	34	14	1	1	1	51
C/G	-	-	-	-	-	2	1				3
AG/CT	-	5									5
AT/AT	-	9	1								10
AAG/CTT	1										1