Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_039751
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 212153
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Found at i:1423 original size:17 final size:17
Alignment explanation
Indices: 1401--1434 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
1391 ATACATAAAT
1401 AATGAGATATTTTATTA
1 AATGAGATATTTTATTA
*
1418 AATGAGCTATTTTATTA
1 AATGAGATATTTTATTA
1435 TTATTACAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.03, G:0.12, T:0.47
Consensus pattern (17 bp):
AATGAGATATTTTATTA
Left flanking sequence: Indices 901 -- 1400
AAAATTTCTCAAAGGCTAAGCGAGCGCAGCGCCGCTTAGCTCTAAAATCAAAGAACAAAAGAGAA
AAGAAGAAGATTGGGCTGGCTGTTGATGGATCTGCTCGAACTTTAGTGGGCCAAGCTAAGAGCTC
AATCTTCTTAAAGGCCCAAGCTCAGCCCGGGTAAGGGATCAGAGGGCAGCACAGTGCGTGCCTCA
AATTCGAATTGAAAAGGCCACTAAGCGAGCAATTCGGGGTAAAGACAAGGAAGCCCCTGTTATGA
AGAAAGCGTATCTCATTAATTTTAGGCTGGGATAGAACTCAATAACAAGGTAGCCAGGTTCTTCT
TTATTTAGAACGAGGTAGCCGCCCAGTTATTCGTGCATAACTCATCAAATCCTCTTTCAGGGCTA
GCCGCCGTCCTAGGGTGATTCTTCAGATGGATTGATATGGGTCACATTAAATGGAAACACCACAA
TGTATTAGCATAAAAAATAGATTTGATATATCACCATACATAAAT
Right flanking sequence: Indices 1435 -- 1934
TTATTACAAATAATCTCTGATGTTCGCGGGATAGAGTAATTGGTAACTCGTCAGGCTCATAATCT
GAATGTTGTAGGTTCGAATCCTACTCCCGCCAAAGAAAGGTTCTAATCGTAGTTGGCACACAACG
AACGGGATAAAGAAAGTATTTCTTTTCTGCGCGCTTTTTATTGTTTTTCTTAATAGATCGCTTAA
GTCAAGATGGAATTACGTAGTCTAGTCATTCCTTATCTAACCAGCTTGACGAGGGTGAACAAATA
TCAGGACCGGATCTCGAAAGAGGCGGACCTTTATTCTCAATTCGAACAGAAAAGTCAAAAAGGGA
ACAAAGGGTGGAACTCCAGAAAAAGTAATAAGGAGACTTTTTCTCTAAGAAAAAAAGTTAGCTAG
AATATAATATAAAACAACAGTTTTCATTTCAAAAGAGATATTTTGAATAACGAAAGGCATTCCAG
GATTTGTAACAGGTCCTTTCAAAGTTGGAAATAAAAAAAGCTCGT
Found at i:51134 original size:21 final size:21
Alignment explanation
Indices: 51110--51152 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
51100 AATAAGAAAA
*
51110 GACCGTAGAGACAGAGAATTT
1 GACCATAGAGACAGAGAATTT
*
51131 GACCATAGAGCCAGAGAATTT
1 GACCATAGAGACAGAGAATTT
51152 G
1 G
51153 TTTATGTTCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.37, C:0.16, G:0.28, T:0.19
Consensus pattern (21 bp):
GACCATAGAGACAGAGAATTT
Left flanking sequence: Indices 50610 -- 51109
TTCGGTTCCGCACATGGGTTGACTATGCAGAAAAAGCAGAAAAAGAAGGATTTGAGTTTTCTACT
AAAAAAACGGGCACTACCAAAATAATTATAATTATACATACCCATTTTTTTTACGTCTCCGTTTT
GATTGGAATTGGAAATTTCGAAACAGGCTGGTATACTACCATAATGAAGCTATCCCCTACTTTCT
GTATTTGGATAGGGTTCTTTTCTCTCTGTTGGGAGGTTTGCGTAGTTTCTGACGTCAGCTCGCTT
TTCACAAATTTAATGGAAATTAGAGAACCAAAAATCCTCTAGAGAGAATTTGCATGAATCTGGAG
TAAAAGGATTCGAACCTTTGTATGTCGATTCCAAAAACCGACGCCGTTCCACTTGGCTATACTCC
ATCCAAAAAGCCTAGAAATCACTCTTCTTCATTTGTTGCTCGCTAAGGGCTTTGCCTCCTGGAAT
AAAAACCATAATCACTTCCCACTGCGCCAATGGCGAATAAGAAAA
Right flanking sequence: Indices 51153 -- 51652
TTTATGTTCCTCCATATTTTGCATAACTGAATTTCATCCATGTCGTAAAGAACTAAGCTGTACTA
CTAAACTTGGCTCGTTCCCCTATGCGTACATAGTGAACGGAGCGCGTAATAACTTCTAATCTGAT
TTTTGAATCGAGCGCGCTTCGCGTTATGAATCAACGTAGATGATTTTTTAGGAAGCCGCCCCGCC
CGGAGCAATGCGGCGGTTTCATCCCTTCACTCCTTGAGCACACGAGCCAAGCAGGAGAAAATCAA
ATGCGTTTTATTCTATGTCGTCAACCATCGTAGACGGTTGATTACTTCGAGGTCTGCGGTTTTTT
GTTTAGGACTTCGTCCAAACATCAACCATATTGACAAACATACCCTTGGCTTTTTTGTGGCAAAA
AGCCTGGCTTCAGTCACTTATTCGACCACAGATATGCCTATATGCAAAGAACAAAAGCCTAATTG
CCTTACGCAAGTTAGAAAAAATTTTCTGAAAAAAAAGCACAAACA
Found at i:52933 original size:14 final size:14
Alignment explanation
Indices: 52914--52942 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
52904 CCTGGGCCTA
52914 AATTCTGCTTCGAC
1 AATTCTGCTTCGAC
52928 AATTCTGCTTCGAC
1 AATTCTGCTTCGAC
52942 A
1 A
52943 CTAGAGTCGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.24, C:0.28, G:0.14, T:0.34
Consensus pattern (14 bp):
AATTCTGCTTCGAC
Left flanking sequence: Indices 52414 -- 52913
AAAAGCAACACCTACGAGCTGTCATTGAGTAGGCGCGTGGGGACACGATGGGTTTTTGCGTGCCT
CGATCGGTCAAGGGTCACCGGAGGAATAGCACAAGATCGCCAGACCTTGCCACAGAGTCAAGCTG
TCAATGAGATAAAAAAAAGGGGCTCCTGAAACAACGGATATTTAGTCATCGGATCAGATACCAGG
ACGGAAGACAATCTAAGGAGCGAAAGCTCAACTTAATGAGTGAGATAGGCCACCCGCCGCCATTC
GCCGACCGACATAGAGGGCTAACTCGGACCTTAGGTAACAAACGACTAACCAAAAAGTCCCTCAT
CTTGTTAACCACGCGAAGTATTTCGTATTTCAGGGGAAGACGTTTCGTTTGGTGCGCACGTATTT
ATTGGTCGATCGCCACGTTGCGATATACACCACTCGCGAAGTGGCAACTTTAGTGATAGCATAAC
CGCTGGAGCCCTAAGTGGGGGGCGACAGCGGTTGGCCTGGGCCTA
Right flanking sequence: Indices 52943 -- 53442
CTAGAGTCGTCTAATGGGAAACTATCACGTGCGCTTCTGAGAGGAGGGAGGAGGAAGAGGAGGGG
GAAACAGGAAGAGGGCTTGGAGTCTACCTATCCCAAAAATACAGAAGGAGACGGAAGGGCTAACT
TAGTCACCAATTCCTGGGAGGAGGCCACTTGGCCCATCAAGTGCTTTGCACCTTGATGGGCCAAG
GCCAAGTAAGCGGGGGCATGTAGTTCATGGCCAAGCTCAAATAAAGGAATGCGTTATCTTTTTTC
CATGCTGCTTGATGGAAACAAGCAGCGCGCCCGCTGGTCAGGTGCGCGGCACTTCGTGAGCGAGC
AACAAAAAACTCGATTTTTCTAAGAATAAGAAATAGAACTTTTCTTGTTATGCTTTTTTCTCTTC
ATTTTTGGCAAGAGAAGAAAACTTGTTTCTCTGAGCGCGAAGGTTAGAAAGGTTAAAGTTAATTA
ATAATGTGTTTTTGGCGAATAACGGGATTCGAACCCGTGTTTTCA
Found at i:58756 original size:13 final size:13
Alignment explanation
Indices: 58738--58763 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
58728 AAAGGTCCTT
58738 TGGCCTACTTAAG
1 TGGCCTACTTAAG
58751 TGGCCTACTTAAG
1 TGGCCTACTTAAG
58764 GTCGAGGCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (13 bp):
TGGCCTACTTAAG
Left flanking sequence: Indices 58238 -- 58737
ATAAAAGGGGAGAGGAAAGAGGCCCTGGTGAACCATCATAAGTGAACAAGTGTAAGCTTTGCTGC
CCAACAGTATCCAGTACTGACCACACTGAGGGGCGAGGCCCTACCTAAGGCGAAGGGCTGGAACA
AGGGGTACTTGCAGTGTAATTTTTTGGCCTTGCACTGAACATCCAAAGGACCCTGGACTAAAGGC
CACTGTCTGAAAGGACTATGTCCAGGAGACCGCCCCACAAAGTACATCTTGCGCCTATAGGCCGC
TATAACTATCCAATACACTCGAAACTGGAAGACTCTGTTAGGGCTCCCTCGCGGGCGGGCCGCCA
AGCTATAAGCCCTACAGGAGCAGGATTCTCTAAGAAGCAAAGGCCCTGGCTTAATTTGTTTTCTT
CGCCTGGGATAAGCCCACTTGGAGACTTAGGATATCAGTAAAAACTGGAAAGGGGAATGGGTTAT
AAGTAGGTTTTACATAGCCCGAACGAGACCCCGGGAAAGGTCCTT
Right flanking sequence: Indices 58764 -- 59263
GTCGAGGCTGCCTTTTGAAAACCCCAACCAGGATTTATCAAGCTTCTCGCTATAACGATATGGAC
CAGATGCGTGCTTTACAATTCAGACTCATACAAAATAGACATGCAGGACTCTAGGCCGTGAGACA
AGTCACGCAGGAGAAACTGGTGAAACTCCTGACTTTGACATTTGACAAGAAGGTGGTGACCTCAG
AGCCACAAATAAAGATGGCAAGAGGTCTCCAGTGGAATGAGAAGGTTACACTGATTCGTCAGATA
TGGATATCAAAGCCAAAAGAGAAAGAGAAGCAAGCATGAAAACGTCAAATCCCCTCTTCATCTGG
CTCTACGTTTTCTGAGGCCTAGAAAGGAAGCAAGCCTCTTTTCTGAAATAGCTATATTTGCTTTC
TTGGCTTCTAGAATTAAGGGGGAAGGAGGTTAAACGCAAGGTAAGAAGAAGGCCAAGGCCCCCCT
TGAGTGGCTTTATCAAAAAAGCCGGCCTCCACCCTGTTATCAAAG
Found at i:63995 original size:16 final size:16
Alignment explanation
Indices: 63974--64005 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
63964 TGTAGGAACC
63974 TTCTTTGTCTATTACG
1 TTCTTTGTCTATTACG
63990 TTCTTTGTCTATTACG
1 TTCTTTGTCTATTACG
64006 CGGGGAGGGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.19, G:0.12, T:0.56
Consensus pattern (16 bp):
TTCTTTGTCTATTACG
Left flanking sequence: Indices 63474 -- 63973
GGGATTTCGTACACATTTGGAGAACTAGCTAAGCAAATAAGTAAACTTCAAAGTGGATTTGTTTA
TCATTATGCTTCCGCTATGTTGATTGGCTTAACCATATTTATTACTATCATAGGTCTGTGGGATT
TTATCTCTCTCTGGGTGGATAATTGATTGTATCTTATTTACATAGCGACTTTTTTTTTTATTAAT
CTCGAAGGAGACATTAGCACGAATTAGAGACCTATACTTAATTGTATAATACAAGAATCTTTAAG
GGACGCCATGATAAGCCGGTGCTACGCTCTTTTCGTAGCTCCGCTGGGAGGGCCTAGGCCCACCT
AACAAACAAAAGGGAAAGTCGAAAGTTCGGAGGCCGTAAAACACCAGATTCCCAGAGGGCCAGGT
CGAGAGAAGAGGCGAAGCCTCTTCTATGGCGCGAAGCGCAGAAAAGAGCGCCGAAGGCGCGCCTT
CGGCCTTGTGCTGATGGTACAGAACATTTCCTATTTGTAGGAACC
Right flanking sequence: Indices 64006 -- 64505
CGGGGAGGGGGGGCACGGGTTCTCACATAACCTCCCCATATGACTTTCATCCTGAGCCTGGCCGG
TGCTTAAACCGCCCGGCGGCTTTGATTTTGAAATAGAATAGAACGACACATATACAACTAAACAC
AAATCTAAATACGCTATTGCAGCGTAATAATTATAATCCTTCCAATTTCCTACCTTTTTAGTAAA
AGCCTCAAGCCTAACAGCAAGTGGCCGCAAACGCGGTTTCTTCTCTCTACAAGAAAAGGCCTACC
CTCTCGAAACAGATGATAAAGAAAACTTAGTAAAATAACCATGATACTTTCTTCCGTTTGAGTAT
TGCTTCAGTCTCTAGTGCTCTGGTACTACGTGCCAAAAATCTAAACCATTTCGTTCCCTTTTTTA
GACTTGTTTTTTACAATACTCCTAGAACAATCCTACTTGTTTTGTTAGGTCTCAACTTTTCTGCT
ATGATTTTGTCAGTGGTTCACATAGGAGCGCTTTTCCATTCTCAT
Found at i:78085 original size:17 final size:17
Alignment explanation
Indices: 78065--78099 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
78055 AGGGTTATGG
78065 TGCACAGAGGATTTTTC
1 TGCACAGAGGATTTTTC
*
78082 TGCACAGAGGCTTTTTC
1 TGCACAGAGGATTTTTC
78099 T
1 T
78100 TAGAAAGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.37
Consensus pattern (17 bp):
TGCACAGAGGATTTTTC
Left flanking sequence: Indices 77565 -- 78064
GACCAAGCAAGCCGATCAAGGCCACAGTCAGAAAGGCTTGACGAATGAAGGCAGGGACGTACATA
GTGACATAGTTGTTGGCATGGCAAAAACTACTATAAACCCTTTCTGCTCTTCGCCCTATTTTCTT
GGCTGGCTTTACGACGAAAAGAAAAGGAAGCGCGGAATGGCCGCTTCTGGTGTGTAATGTTGACA
GAATAAAGAGCTTTGGTTTTTGGTTGACATCACGAATTCTCGTAAATGGAAAAATAAGTAGCGCA
TAAACGAGCTACAGGCTGCAAGCTGGCTCTGTGCCATTTTCCTTGATTGCTGTGCAGGGCTGGGT
ATCCTTCTCCAAAATAAAATAATTTCGTCCCTTTCGTCTAGGGGTATAGGACATCGTCTTTTCAT
GGCGAGAACACGGGTTCGAATCCCGTAAGGGATAAGGGACCTTACTCTACATTATTACTACAGTT
ACTCCAAGGGAAAACGCAAAATCAACAAGTTTTTGAGGGTTATGG
Right flanking sequence: Indices 78100 -- 78599
TAGAAAGAAAAGACAAGAGCGCAAGAGAAAAGGCCTGCGGCAGCTCAGCCGTGATTTTTTTATTT
CTCAAGCATGTGATCGCTTGGCTTGGTAAGGGGAGGAAAAACATGCTTCTGTGCTGCTCAAAAAC
CCGCCAATAATGCAAGACAAGGGAAATCAAACAACAGGAGCATGAATGATCTACAAGAATTTATT
ATCTACGCGCCCTTTATTCCTTCCTAGAAAACATAAAGCAAAAACAAATCTATTTCTTGTCAATT
TAATTTATCAAAAATCTAGATTTGTTTTTTAATGCTCTTTGCTTCCTTGTTCATAAAGCCCACAG
AGGGGAGAGTTTGTTACCTTCATCTATAGATTCTCACACTTTATTCGCCGCAAGACCGGAGCCTG
CGGCCGCTGTGCCGGCCTATGCAGAGCTCCCCCGCGATCTTTATCAAAAAAAAAAGCCAAAAAAC
AAAGAACAAGGTTTGAGAAAGTGGAATGAAGGCCTAAAAGAGAAA
Found at i:79425 original size:22 final size:22
Alignment explanation
Indices: 79400--79443 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
79390 TCAAGTCTCT
79400 TTGTGAACTGAAAAGAGTAAGA
1 TTGTGAACTGAAAAGAGTAAGA
*
79422 TTGTGAAGTGAAAAGAGTAAGA
1 TTGTGAACTGAAAAGAGTAAGA
79444 CTTTCTAGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.45, C:0.02, G:0.30, T:0.23
Consensus pattern (22 bp):
TTGTGAACTGAAAAGAGTAAGA
Left flanking sequence: Indices 78900 -- 79399
TTGTCTTCCAGGAGTCCAAGATTTGCAGGGAATACCGAGTCAACGTTAAGTCGGATTTGGATATG
ATACCAAAAAACCCTAAAAAAAATTATGAATTTGTGGAATCAGTGGATTCAAGCCGTGCTTTTGC
TTTATCCCTCGATGGCTTTCACTAACCAAGACTTTCAGAGAAGGTAAGAATGACGCGCGTAACAG
AAAGCTTTTCTATGTTTCGCTTATCCCATCGTAGATCCTTATGCTACGCTTAGGAGGGGCTTGTG
TCATCACGACCCAGAGCCGTGAAGCAAGCACATAAATTGCTCAGACCATTTATTTGAGCTACATC
CAGGGCTTAAAAAACGGTAAACCAAAACTATTAAGAATAAAATTTGGTCTACATTGGCATGATTA
ATAATGAAAAAAACAAAAGGGATCTCGCACTATTGTTTCTAAAACTTCTAATCGTCTAGCTTATC
ATAGCAATGCAATAACACTTCTGATTAACTACAAATCAAGTCTCT
Right flanking sequence: Indices 79444 -- 79943
CTTTCTAGTACTACTCAATTAATACCATTTGTTATAACAAAAAATCGTCAAGAAACCTTAGCTAT
TCGTTGGATGCTTGAAGCAGCTGCCGAGCAACGAGCCAAAAGAATATAAGCTTAGATCCGTATTT
CTCTACTAAGATACTAGATACTTCTCAAAAGCTAGATACTTCTCAAAAGATGGAGATGGCACGTC
AAGAAAGGGATGATCTTCATAAACTTGCTGAAGCCCATCGTAGTTTCTTGCATTAGAGATGGTGG
TAAACTCTTTCAAATGTGAATTGAGCTACAAGGAAGGCGAAGCGCAAAAAAGCTTATAATGAATG
TTGAATGTGCTTCGCCTTTTTGTTTCCTTACTCTAGAAATAAATAGAAAGCTAAGCTTGTTGATG
CGTCTGCCTATTTCAAGACCAACCCTCATGGCCCTACAATGATTCAACTATTCGGCCTTACTTAA
AATAAAAAGCAAAGCGTTTCCGAAGACGAGCTTGCTTCTTTTTTT
Found at i:79610 original size:18 final size:18
Alignment explanation
Indices: 79587--79622 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
79577 TACTAAGATA
79587 CTAGATACTTCTCAAAAG
1 CTAGATACTTCTCAAAAG
79605 CTAGATACTTCTCAAAAG
1 CTAGATACTTCTCAAAAG
79623 ATGGAGATGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.22, G:0.11, T:0.28
Consensus pattern (18 bp):
CTAGATACTTCTCAAAAG
Left flanking sequence: Indices 79087 -- 79586
CGTAACAGAAAGCTTTTCTATGTTTCGCTTATCCCATCGTAGATCCTTATGCTACGCTTAGGAGG
GGCTTGTGTCATCACGACCCAGAGCCGTGAAGCAAGCACATAAATTGCTCAGACCATTTATTTGA
GCTACATCCAGGGCTTAAAAAACGGTAAACCAAAACTATTAAGAATAAAATTTGGTCTACATTGG
CATGATTAATAATGAAAAAAACAAAAGGGATCTCGCACTATTGTTTCTAAAACTTCTAATCGTCT
AGCTTATCATAGCAATGCAATAACACTTCTGATTAACTACAAATCAAGTCTCTTTGTGAACTGAA
AAGAGTAAGATTGTGAAGTGAAAAGAGTAAGACTTTCTAGTACTACTCAATTAATACCATTTGTT
ATAACAAAAAATCGTCAAGAAACCTTAGCTATTCGTTGGATGCTTGAAGCAGCTGCCGAGCAACG
AGCCAAAAGAATATAAGCTTAGATCCGTATTTCTCTACTAAGATA
Right flanking sequence: Indices 79623 -- 80122
ATGGAGATGGCACGTCAAGAAAGGGATGATCTTCATAAACTTGCTGAAGCCCATCGTAGTTTCTT
GCATTAGAGATGGTGGTAAACTCTTTCAAATGTGAATTGAGCTACAAGGAAGGCGAAGCGCAAAA
AAGCTTATAATGAATGTTGAATGTGCTTCGCCTTTTTGTTTCCTTACTCTAGAAATAAATAGAAA
GCTAAGCTTGTTGATGCGTCTGCCTATTTCAAGACCAACCCTCATGGCCCTACAATGATTCAACT
ATTCGGCCTTACTTAAAATAAAAAGCAAAGCGTTTCCGAAGACGAGCTTGCTTCTTTTTTTGGCT
TCAAGAAGAGAACGCAAAATCTATCTAGATTTTCTTGCGTCCTATTTTCTCCTTTTTTGCTTTAC
ACTAGTATGGCTCTGTTTTATGGTGGGCTTCGCCTGATTTAGGGAGGAGGGTGAGAAGGGAGTGG
CTTTCAAGAAGCTTAAAAGCTACTCTCAAGGGCATTTGCTCGTTT
Found at i:81956 original size:14 final size:14
Alignment explanation
Indices: 81937--81964 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
81927 ATTGCGCTTC
81937 GCTCTGTGTCTTGG
1 GCTCTGTGTCTTGG
81951 GCTCTGTGTCTTGG
1 GCTCTGTGTCTTGG
81965 CCTACAATGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.00, C:0.21, G:0.36, T:0.43
Consensus pattern (14 bp):
GCTCTGTGTCTTGG
Left flanking sequence: Indices 81437 -- 81936
AACTTAATGCGCGAAAACTATGAGGAAACAGCTCGAGCATTACTAAGAAAGGAGCTAAGGGCAAT
GCTACTCCTCGAGGTAAAAAGAATAGGGTCAAGAGTTCATTCACTGGGCTGTACAGCAAAGCTGA
CCTTTGCCCGAGTGACCGTAACAAGTGCTCTCCGAACCGTGCAAGATAGTCACCTATCACACGGC
TCACCAACCCGAACTACCAAGGAAACACCCCACTTATGAGCATGTGCCGCGCTCTGAGTTCTCTG
GCGCAAGATAATCTGTTTTCTTTCAACGCGCCATTTACACATATGATCGGCCTTTCGAATCATTC
AGCTGAGGAATCACGTCCTTTGGCCTGCGGTCTGGATGTCGCAGCCCCGCCGCGGCCTTTTAATG
CCGAAAGGCCCTGCCGGGGCCTAGAATTCCTGTACAGCTTGATTAATGGATCTCTTTGTGTATTA
TCCATTTCGCCATCTTCCTGCAATATAGCGGTTTTATTGCGCTTC
Right flanking sequence: Indices 81965 -- 82464
CCTACAATGCATATAGTCTATGGCAGGGCTTTGCTAGATGAGAAGTAGGCTTGCGTCAAATAGGA
ATGGCATAATCTTCTTCCGCTAGCTGTGTTTTGGAAAAGCGCTTACCGGCCATAGCGAACATCTT
CTCTTCGCTCGGATGTCGCCCGCCGCCCAGAGGCCTAGTCTTAGAATGGTTGACCATTCGCTTAG
ACATGGTCACTTAGGGTTTGCGATGTGAGAAAAGTTAGCAAGGCCCATCTCTGAAAGTATTAAAG
TCTTTCCATTTAGTTTTTGGGGAAGAAAACGGTTCCGCACCTGAGGGCTGAGCAAGACGAAGAAA
GGCCTCAGAGAAAAAAGGACCAGAGAATAAGCTAACTTAATGTTGATTACACAGCCTGGCAATTG
ATGAGTGCTAAGTTCTTGTTCTTTGCGCTTTAGAAAACTCAGAGAAAATAAGACTTCTCTTCTCT
GGTTCCCGCCGAGGCACTCTTGGTATCGCCAACGCGCCTCGCGCC
Found at i:91668 original size:16 final size:16
Alignment explanation
Indices: 91649--91681 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
91639 GTAAAACAGG
91649 GTCAAAGATCTTCTTA
1 GTCAAAGATCTTCTTA
91665 GTCAAAGATCTTCTTA
1 GTCAAAGATCTTCTTA
91681 G
1 G
91682 ATCTTGGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.36
Consensus pattern (16 bp):
GTCAAAGATCTTCTTA
Left flanking sequence: Indices 91149 -- 91648
GGGAGCCTCATATGCTTGCTTTTCGTTAGGCTAATCAAACAAAAAAGGACCGTAGGACGAAAAAA
GAAGACGAAAAATAAGAAGTGTTTCTCTTTTCTACCCTTGTCTCTCTGCCCCTTTCATTCGCGAA
GCGAAGGAAGCGGCACTTTCCCCCAGCCGTAGCTTTACAGGATTAAAGTCTCGCCTTCCCAGCTT
TCGCCAAAAGAAGAGAAGAAAACTTGTTTGCTTCTACGAGGAAGGCCCTCAACGAGCGAAGAGAT
TTTTTTCGAACCTTCGCTCGCCAAGAAATCTATAAGCGCGGCTGAAAGAAAGCCGCTGCGCCCTT
TTCTTCCACAAGCCTTATTTATGGTCGATCTTTCATTTGCTTGCATTTTTTTGGTGGGAGAGAAG
AATCTGTTGGATTTTTTTAGGCTTTCACCCGCTTGCTTTTGGGTAGTTATTTGAATTTGCTTTCA
TAAGGCTAAGCAAAGTAAGGCAGAGAGAAGCAAAAGTAAAACAGG
Right flanking sequence: Indices 91682 -- 92181
ATCTTGGTTTCTTCAGGGTTTACTTCTCGAGTGGGCTTGGAGAACAAAGCGTGTGTGTTAGATGG
TGAGCAGACGCCTCTCATTCGACGCTTTTTTTGGAATCTTCGACTTGGTAAAAGGATGAACCCCG
GGGCAAAGCCCGCAAAGCGCCCCAACGTAGTAGACCGATTTGGAGGAAAGACCTGCGTGCTGTAA
TTGCCAAAACAGGGCGGAGCGAATGAAGGTGACATAGCAGTTCGTTCTCTTCTCTCGGTTACTGT
ATTGCCTTTGATGCCTTTCTCTTTTCTATCTAAAGTGCACTCCTTTACTGTGACTTTTGTCCTTA
CCGCTAATATAAAATAATAAAGGGTTGGCACTTTTTCTTTAGTAGCTCAGCGTTTAGAGCGAGTG
ACGGTTAAGTGCGCTAAATCTATTGGTACAAGTTAAGGAGACCTCACCTTCTTCATTTTCAAAAA
ATTCCTAAAATGCACTATGGTATAAACTAGGCCGGAGTTAGACCT
Found at i:107149 original size:12 final size:12
Alignment explanation
Indices: 107134--107159 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
107124 CACCAAATCC
107134 GAGGACAAAGTG
1 GAGGACAAAGTG
107146 GAGGACAAAGTG
1 GAGGACAAAGTG
107158 GA
1 GA
107160 AGAAACAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.08, G:0.42, T:0.08
Consensus pattern (12 bp):
GAGGACAAAGTG
Left flanking sequence: Indices 106634 -- 107133
TTTTCCTAAGATTTCTCAGAAGCTTCACTAATTAGGACCTCCAAGAGTGCCGGTCTAGTGGTGAA
TTGGAGATCTGGTGAACCTTACGACTAGATTTTCCATTTTGACAAATGGCTGTCTCCAGGCCTGC
TGAAGTACTATTGCTTCGCTGACAACTGGTTGACCTTTACCTCTAGTCCAAAACTTGGAATTCAC
AGAAGTGGTGCTCGTACGCTGTCAAGAAAATAAACGACTTCTATTAAGGCTATCCACCAGAGGTA
TATTGGGGCCTAATCTCGCAAGTATTAGTTCTGTACTGCTCCCTGACAATCAAAGGATCGTCGAC
AATAACCTCTCGAAACACCAATACACTATTTTGCGTTCTGGACCCGCAACCCTGAATTTTCCTAA
ATTCACCGACGTTACAGAAAAACCAATCTGGGAGAAATTACTCACTTTCTACTCTGGAGAAGGAC
AGAAGAATCGTGAGAGGTCCTTGTTTCAAATACAGCACCAAATCC
Right flanking sequence: Indices 107160 -- 107659
AGAAACAATAGAAGTATTACGCAAATACTAAAGGATCCCAGCTGAGAAAGACCGGCTAAGTACGG
GCAGGACTTCGAACTGCTTCCCAATGCACTGTGGTAGGGGAAAGGGGGGGAGGAGGGGGGGGAGG
GGAGAAGAGGTCACAGCGGCCTCTGAGCTGCTATATGCAGGTAAATGTCTGATCGATGATTAAGA
TGCCATAGAGCCTGGGAAGTTCATCACATTTGCAAATAGGTTGACCAATCTTAATCTTAGTAATT
ACCAAATGCATGTCAGCGATTAATCAAAAAAAAAGAATGCTGTGTCGCAAACACCACAATCTTCT
ATCAAGAAGCAGTTACTCTGGTACGAAGCTAAAATTGCTTTCACTCTAGACAACACCATGAGGAT
ACTGGGTGGGTCTCCCTCTTCCTCTCAAAGAGGAATAAATGGACTAGTGCTTTATCTATGATGAA
GCACACTCGTTTCTTTGCGGAGTCCTCTTGTTCTATCTAAATGTT
Found at i:121423 original size:15 final size:15
Alignment explanation
Indices: 121403--121432 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
121393 TCGCCACAGA
121403 CTAAGATAATCCTTG
1 CTAAGATAATCCTTG
121418 CTAAGATAATCCTTG
1 CTAAGATAATCCTTG
121433 ACTGACTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.33
Consensus pattern (15 bp):
CTAAGATAATCCTTG
Left flanking sequence: Indices 120903 -- 121402
GCTAGAAAGCCAAATAAGGCGCGGTCTGTCTGCTTGAAGTTCGGTCGCTACGCCCTTATTATACC
TACAAGCCTTTGGCCAGGACGAAGGCCGAAGGCCTTAGAGTCCATAAAACAGGTCTAAACATATA
TCTATCGAAAATAAGCTCGACCTTATTATTTGAAAGAGAGGCAGAACGTTGATGTGGACCTCTCC
TCGTCCGTCGTGCTACACCACCATATAGTTGGAGCTCCTTGGGCCTGCGGCCTTAAATCCTAGAA
GCTTTATCCAAATCCCTCCCAGTGAGACTATATCCGTCGTAAATTGCTTTGGAGGGAGCGTAGCC
TGAAGCAACCTTCAGTGAAGGCTGCGACCCACTCCTCTGGATTCCGGGAAAAGTGCAGAGCGGGC
TATAATCCAAGGAATCCTGAAGTCTGGAAGAAAGCGCCTTAGGCTCATCCACGCTTGATCACAAA
AGAAAGAAGGAATAGCAGTGGAGGTTGTTCAAGCCTCGCCACAGA
Right flanking sequence: Indices 121433 -- 121932
ACTGACTTTCGCAACATAGCCAATACCTTCGGCGAACAGAGACAATCTTGGGGCCGACAAGGGAT
GTTTACAGAGTTACTGAAAACAAGTTTGCTTTTGTGTACACTTCATATTTCCAAACTTTTAAATC
AGGTATTCCGAGAGCTATCCTTCGGTTGTAAGATAAGAAGCTAGACCCCGCCTCACCTCATATTA
GCCCATTTAGACGAGAGAACCCTATTAACATTCTATGGAAACATTGCTGCTGACTGTACGGAACT
TCTCCAATAAGAGGCTAAGATCGTGGCTCAGATTTTGGCTTACAGTTTAATGACTCGAAATTCAA
TGAGTTTCACTTTGATTAGAAGTGGGGAGGCCATTGAATTTAACTCTCCTCCTTCTAAGAGGACT
TCTTATTCTTTCTTTAGTTTTGCGTGATTTGCATGATTTTTTGGATTTTGCAAAACCATCTGAGG
TAGACATTTCTGAAATTCCCTAAAAAAACCTCTATTCATGTTCAA
Found at i:131786 original size:12 final size:12
Alignment explanation
Indices: 131769--131793 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
131759 CGACTTTCAA
131769 ATATCGAATGAG
1 ATATCGAATGAG
131781 ATATCGAATGAG
1 ATATCGAATGAG
131793 A
1 A
131794 ATCTCGTTCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.08, G:0.24, T:0.24
Consensus pattern (12 bp):
ATATCGAATGAG
Left flanking sequence: Indices 131269 -- 131768
GGCAAAACCAATAGCGGGCTAAGTGCAGCGAAGCGCATCGCCGCCCTTGCCTTGGAGTCAGCTTT
GCCTCCATCTAACAAAAAAGCAACCATTGTTGCAAGCCATAAATGGCCGCAGCAGCAGGTGCGAC
CGCCAAAAATCAAGGGGAAACTTCAATCACAAGGCTTGTGTAGCCTTCTCTTCTGATCTTCTCGA
TTGAGGAACGAGCTAACCACAAAGTAAGGAGTGGAGCCTGAACAAGTATGCGTTTTAGCCTAATG
GCTGCGATATTTAGAAAGGAGACCTTGAGAAGGCTTGGTTGCAGTAGACGACCCCGAGGAAGGCG
GCTGCTCAGAAGAACAGCTAACTTAAGCGGACCGCCTATCGCCGCTAAGTGCCTCGTCGTTGTTT
TGCTCTTTTTACGACAGAATTGTATGATGCTGCAAGCGGCTTTCATGAAAATCAGGAAAGGTCTT
CATAATATTTAGATGAAATTGCATGATGCTGCGAGCGACTTTCAA
Right flanking sequence: Indices 131794 -- 132293
ATCTCGTTCGAATGATTGAGGAAATTCATTATATATGATGCTGCAAGTAGCCTTCGAAGGCGAAG
GCGGCATTAGCTTTCTTTCAAAATAATGGAAGAAATCTCAAAATTAGACCTTAAAACCACCGATG
GCTCGTCACTGCGCCCCTTGTGTCATTCTGTCTTGCAAGCAAAAGCCCGAAGCCAAGTCAGAGAA
TAAGAAAACTATAAGCCAAAGAGCTGAAGACAGCTAGCGCAAACCAAAAAAAGGGATCACGCAGA
TCATTTCCAAGCATTAGTCAAGATTAGCACCCACGCGAAATATAGAAACAGTGAGTGAAGTAAAT
GCTAACTTTGCAGAAATATAAAAAGGTAATGTTTTAATAACCACATAAAACAGAGAATTCATTCT
TAAATAAAAAGGAATAGATGTTTTTCCTTAGATTTCTAAGCTAAGTCATTATTGTGTAATTCTCG
GTATATAATAGAATAAAAACTGATCGCTGAAAAAATCTAAGGAAA
Found at i:142322 original size:24 final size:24
Alignment explanation
Indices: 142290--142338 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
142280 TTTGTTTTAG
*
142290 GTTTGATTTAATATAATCTAACTA
1 GTTTGATTTAAGATAATCTAACTA
*
142314 GTTTGATTTAAGATAATCTAGCTA
1 GTTTGATTTAAGATAATCTAACTA
142338 G
1 G
142339 GAATTTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.35, C:0.08, G:0.14, T:0.43
Consensus pattern (24 bp):
GTTTGATTTAAGATAATCTAACTA
Left flanking sequence: Indices 141790 -- 142289
TTGGTGGCTGGATGGAGAAAAAAAGACCTCTTCTTTCTATACCCCACCGGCGGTCTGGCCGCTAT
ACGAGCCTGATTCTTTTAGAATAAGCCTAGTACCGGCTCTATGTTTATGGCAAAGAGCGAGGCGC
ATTTCTCAAACAAAAGAGAAAATGTACAGAAATCTAGATATATGTATTTTTTCTCAAACTAATTC
ATTCAATTTATGAGGAGAGGAGCCCGAGGAGCCGCCCTTTTATTTTCTTATTCTTTCTTAATATT
GAACTAATTATTCCTATTCTTCTTCTTCTTATTATTCTCGTTCTGTTCAAGATTGATGAAGAAAC
ATATACCTTTTTTTTCTCTCGTTCATGCTTCAATGAAAAAGGTTTAGATCAATGTTCTAAGGGAA
TCGTATTGTTAAGGTTCATACAATACAACAGCTTTAAATGTTTCACAATTGGCCTCTGAATAAGT
AGGTTTCCTTCTATTTATTCGCTTAGTTTTTCTATTTTGTTTTAG
Right flanking sequence: Indices 142339 -- 142838
GAATTTTATTAAATAGATATTGATATTGGATATTTTAAAACCAAGAATCTTTACTATTTTACATA
GTTGACATAACCCTTTTTTTTAGAACTTTTTATCAGCTGCCTTGCTTAAAGGATAGTTGAACAAA
GATTAAGACAAATCGGAATAACGTCCAATCCTTTTTCTCAATGGAATAGCCAACTGTTCCTTTTT
TGATCTGGAATCATAAGTATGCATTTCAGCGCTTTGCCTTTTTTTTTTAGGTCAATTCCCAGACA
ACTTGTGTATAGTTTGTAATTGTTTGAAGAAAAAGTCAGATTGTTTTTGATTTGTTTTTCTTTCA
AGCTTCAAAAGAAGAATTTTTCGTCTTTGAGTAAGTCTTTTGGTTCGCCCAACATTTTCTTAAAT
TCGACAACAAGTTGTAATTTTTGGTGTAGGCATAGGAAGTTTAATTTGTTTTTTTAGTCATTGCG
GATAACGAAAATCGAACTCATATCCTCTGTTTAGAAGGCAGATAA
Found at i:143678 original size:13 final size:13
Alignment explanation
Indices: 143660--143685 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
143650 CTCCGTAAAA
143660 GAAGCAGAGCCTT
1 GAAGCAGAGCCTT
143673 GAAGCAGAGCCTT
1 GAAGCAGAGCCTT
143686 AAAGTAAGGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.23, G:0.31, T:0.15
Consensus pattern (13 bp):
GAAGCAGAGCCTT
Left flanking sequence: Indices 143160 -- 143659
TAGTTTGGGTAAGCCAAGCGCAGAACATAAGGCCGTTACGCAAGAGGCTAAATAACAAGTCTAGC
CATCAGGATACAGTCTAGAAAGATTCCCCTACCCTATTCTTGCTAGAGAGCCCTTTGGCCTGTTA
CACCCACCCCGTGATGGAGCTACAAAAAAAAGCTCCGGGCTGGCTGCTTAAACCAGCACGGCTAC
GCTGTTGAAAAATCTAGATCTAGATTTTTCAGTCCTTTCTCCGTCTTTCTGATGAGCTTTCATTC
ACATAGTAATGGAATCTTAGGTGAATTATTGGTTGTTTTAGGCTCATGATCTTTTTTATAAAGGG
ATGGATGTCTGAGCGGTTGAAAGAGTCGGTCTTGAAAACCGAAGTATTAATAATACCGGGGGTTC
GAATCCCTCTCCATCCGTGAGTATGCTAATTAGTTAATCGTTTCTGGGACGGAATCTTTGACAAG
AATCATGAACCATATACTGTAACGGCAGTTCTGTGCTCCGTAAAA
Right flanking sequence: Indices 143686 -- 144185
AAAGTAAGGGCTTCGCCATTATAGCTAAGCAAAGCCATTCGAAATTCTAGTAGGGCTACGCCCTT
CTTTCGTGTGGTGCTGAGTGCCCATCACTCACATGTCGATCCTGTTCAGTTAAGTTCTGCCTATT
GTTGTGGTGCCCCATAGTGCGAATATTTTATTTACGCCCCACTACGAACCCACAGCCTTTGGATA
AAGAAATTCACTTTCATTAGATCAGTAATGAGAGACAGTCGATAATTGTGTGTACAGGGGTGTTT
CCAGTAATCCCAGATAATTGTAGTAGATACTTGTTGAGTTGGTTGAGGGCGTAGTCCTCAACCAA
GGAAAAGCGTAGCCCTCGATCGACAAAGGGCGCCCTCGATCGAGGCCTGATCTCTGCCAAGGAAG
AAAGAGGCTTGATCAATAAAGGAAAGGATCTTCGGGTGGAGAATAAAAGAAGGCCAGGTAGCCGT
TGTTTTTGTCTCGCCCTACTGAAGTCTCAGGCTCCTTGCAGGAAA
Found at i:145263 original size:15 final size:15
Alignment explanation
Indices: 145239--145269 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
145229 AAGAAATTGA
145239 ACCTTGTTTTGGCGG
1 ACCTTGTTTTGGCGG
*
145254 ACCTTTTTTTGGCGG
1 ACCTTGTTTTGGCGG
145269 A
1 A
145270 TATGATGGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.10, C:0.19, G:0.29, T:0.42
Consensus pattern (15 bp):
ACCTTGTTTTGGCGG
Left flanking sequence: Indices 144739 -- 145238
ACCTTAGGTTTTGGTATTTCGTGAGCTCATTTTTCTAGAGAGCATGGATGTTGAGAGGCGTCATT
TGCTTCGGTTTTCTAGAAGGGTTATCTTTGTCTGCTTCAATCACAGTGCCGATGAGATTAACGGC
AATTAGTTAACTGCATTCTGTTCGATGCCTTTTCCCAAACGAAACTGTAAGAGCACTTTGACTAT
CGGTTTTGAGCAGAGCTGGTAGTGTTAGAAATCTGACATTACAAGCCCTGAGGCGCCTAACAGGC
TCGGGCTGTAGGCCTTCTCCTTCTTTTAAGGAAGGCGAGGATTAATTATGTTAAGCTGGTAAACC
CAGCCAGCCAGATGAATCCACGGTGTTTCAGCTTCTTCGCCCTCTACGTACTATTCAAGGCGGTC
CTTGCTCTAAAAAAAGAGCTACCGGCGGCGGGCGGCGTTCCTGGCTTTCTCCAGGCACGCAGCTT
CTTCGCTACGTCCTTATTTGCTTCTTCCGAGAAAAAAGAAATTGA
Right flanking sequence: Indices 145270 -- 145769
TATGATGGAATCGGTAGACATGCCAGGTTTAGGTTCTGGTGACTTTGATGTTCATGGGGGTTCGA
GTCCCTCTATCCGCAGAAATTGGAACTGGATATGCCATCACTAGGCCTTGCAGACTTGCGGCCTT
CTTTCTCTCCGGCCTCTACTCGTTGGGTGACTAGAGCCTATACTTCGTTTCAGCCAACGCTGCAA
AAAAAATGCCGTAAAGTGCATCAGCCATCTACGAAGATTGAGCTGCGCCCTGATGTTCAACCAAT
GAAAGTTGAAAGTCGAGTCACGAAGTGACCACGAATCTACTGCGTAGATCCATCTTTACCATGAT
GCAATTACTTTTTCATGACATACTTTTTATTAGATGAGAATGTCTGTTCAGAAATTCTAGAAATG
GTAGTCTATCTCAAATTCATAAGTTCCTACCTCTAGAGGGGACCGCCCCCTGTTGATTAACATTC
AGCCAAAGAGATTCCTTACCTAAGGAACCTGAGGGCCCCTCTAGA
Found at i:151023 original size:15 final size:15
Alignment explanation
Indices: 151005--151034 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
150995 ATTTTATCAT
151005 AAACAAGAGAATTGG
1 AAACAAGAGAATTGG
151020 AAACAAGAGAATTGG
1 AAACAAGAGAATTGG
151035 GTTACTTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.07, G:0.27, T:0.13
Consensus pattern (15 bp):
AAACAAGAGAATTGG
Left flanking sequence: Indices 150505 -- 151004
AGAAAAGCGATACGATCTTGGATGAGAGCAAAATTCCCTTACAAATCTCTTCCAATTAGGAGCCT
TTGCCTTAGGGTCATAATTGTATGACAAGGCACTAATAGCCAATATCTCTGGAGTGAAATCAGTG
AATTCATTTGTCTCAAGATTGAGAACCCCGTGAGTTAGCAAATATTAAGTGTTTCATATCATAAA
CTGGGTAACCAATTAAAGCATCCGGTCCGAATCTGATTTCGTCTGCAAGCCTTTTGAGTGCACTT
ACAGAAGGTAGACTTAAGTCACATTCTTCCAAAATGTGGTTTCTCAAGACTGCTAATTCCTTTTG
CGTTAACTCTTGGTAAATACCTAAATTTGGCATATAGACATAAGACAAGTCTAACTTAGGATAAG
ATTTGAAATGCCTGAAGATAGTTTTCTTCCTAAACACCTCGCTCGCGAATATGTGGGTTTCATCT
CGTACTTGCGCCCTGTCTAAATGTCTTCATAGTTTATTTTATCAT
Right flanking sequence: Indices 151035 -- 151534
GTTACTTAAATTGATTCATAAGTATCTTCCTATTTTTGCCATTTTATTCATTTTCTATTTCTTTG
GGGGAATAGGAACTTAAGCCCCCTTTTAACCTTTTAACCTTGAGAAATCCTGGTTAAAGGCTCCA
AAGTCCCTATCTTGATCTTGACATACATACAGACTCATTTGAGAAATAAATACTTGTTAACAGCA
CCAAAGACGGCACCAAAAAGAAAAATCCGTCAGAATTTGAAATACATACAGAATTTGCTATGCTA
AATACTGATTAAACGGCAAGACAGATCAGTATATTCAAAAGACAGATCAGTATATTCATTACATA
CAGACTAATTCTCATACTAATTCTCATCCTCATGATATCTCTAGCATTATACAATACATACAGAA
ATCCATAATGGACCGGGTAAATCAAAACCTACCTTCTAGCATCTTTCAGCCTCTTGTTATTTCAG
CCTGTTTGAAGCCTCTTCTTCTTTCAGCTTGTTTCAACCTCTTTA
Found at i:151338 original size:21 final size:21
Alignment explanation
Indices: 151312--151352 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
151302 ATTAAACGGC
151312 AAGACAGATCAGTATATTCAA
1 AAGACAGATCAGTATATTCAA
151333 AAGACAGATCAGTATATTCA
1 AAGACAGATCAGTATATTCA
151353 TTACATACAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.46, C:0.15, G:0.15, T:0.24
Consensus pattern (21 bp):
AAGACAGATCAGTATATTCAA
Left flanking sequence: Indices 150812 -- 151311
GACTGCTAATTCCTTTTGCGTTAACTCTTGGTAAATACCTAAATTTGGCATATAGACATAAGACA
AGTCTAACTTAGGATAAGATTTGAAATGCCTGAAGATAGTTTTCTTCCTAAACACCTCGCTCGCG
AATATGTGGGTTTCATCTCGTACTTGCGCCCTGTCTAAATGTCTTCATAGTTTATTTTATCATAA
ACAAGAGAATTGGAAACAAGAGAATTGGGTTACTTAAATTGATTCATAAGTATCTTCCTATTTTT
GCCATTTTATTCATTTTCTATTTCTTTGGGGGAATAGGAACTTAAGCCCCCTTTTAACCTTTTAA
CCTTGAGAAATCCTGGTTAAAGGCTCCAAAGTCCCTATCTTGATCTTGACATACATACAGACTCA
TTTGAGAAATAAATACTTGTTAACAGCACCAAAGACGGCACCAAAAAGAAAAATCCGTCAGAATT
TGAAATACATACAGAATTTGCTATGCTAAATACTGATTAAACGGC
Right flanking sequence: Indices 151353 -- 151852
TTACATACAGACTAATTCTCATACTAATTCTCATCCTCATGATATCTCTAGCATTATACAATACA
TACAGAAATCCATAATGGACCGGGTAAATCAAAACCTACCTTCTAGCATCTTTCAGCCTCTTGTT
ATTTCAGCCTGTTTGAAGCCTCTTCTTCTTTCAGCTTGTTTCAACCTCTTTAAGCCTCTTCTTGT
GATGAACCTGATTCTGATGGTGAAGCTTCCTTGGAGGGCTGCGGGTGTTGCTTCGCTAGCTTCCT
CTAAGCTTCTAGAGTTAGTCGGAAACCTTCTCTGGCAACCTCTGGTACGGGTAGGACTGAATCTC
TCTCTCCTGCTTTCTCGAGAGCTATGTTTGGTATGATCTCGTCGTTTGGTTTTCTATCTGGGATC
TTATTATCTCCCTTGCCATAGATAGAGCCAGGTCCATAAGGTTGCAACTCCAGCTATAACGATGA
CTCCTCCAATTATGAACAATATCAGAATTAGGAGACTATGAACTA
Found at i:151514 original size:27 final size:27
Alignment explanation
Indices: 151468--151532 Score: 80
Period size: 27 Copynumber: 2.5 Consensus size: 27
151458 TTCTAGCATC
*
151468 TTTC-AGCCTCTTGTTATTTCAGCCTG
1 TTTCAAGCCTCTTCTTATTTCAGCCTG
* * *
151494 TTTGAAGCCTCTTCTTCTTTCAGCTTG
1 TTTCAAGCCTCTTCTTATTTCAGCCTG
151521 TTTCAA-CCTCTT
1 TTTCAAGCCTCTT
151533 TAAGCCTCTT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
26 9 0.27
27 24 0.73
ACGTcount: A:0.12, C:0.28, G:0.12, T:0.48
Consensus pattern (27 bp):
TTTCAAGCCTCTTCTTATTTCAGCCTG
Left flanking sequence: Indices 150968 -- 151467
CGCCCTGTCTAAATGTCTTCATAGTTTATTTTATCATAAACAAGAGAATTGGAAACAAGAGAATT
GGGTTACTTAAATTGATTCATAAGTATCTTCCTATTTTTGCCATTTTATTCATTTTCTATTTCTT
TGGGGGAATAGGAACTTAAGCCCCCTTTTAACCTTTTAACCTTGAGAAATCCTGGTTAAAGGCTC
CAAAGTCCCTATCTTGATCTTGACATACATACAGACTCATTTGAGAAATAAATACTTGTTAACAG
CACCAAAGACGGCACCAAAAAGAAAAATCCGTCAGAATTTGAAATACATACAGAATTTGCTATGC
TAAATACTGATTAAACGGCAAGACAGATCAGTATATTCAAAAGACAGATCAGTATATTCATTACA
TACAGACTAATTCTCATACTAATTCTCATCCTCATGATATCTCTAGCATTATACAATACATACAG
AAATCCATAATGGACCGGGTAAATCAAAACCTACCTTCTAGCATC
Right flanking sequence: Indices 151533 -- 152032
TAAGCCTCTTCTTGTGATGAACCTGATTCTGATGGTGAAGCTTCCTTGGAGGGCTGCGGGTGTTG
CTTCGCTAGCTTCCTCTAAGCTTCTAGAGTTAGTCGGAAACCTTCTCTGGCAACCTCTGGTACGG
GTAGGACTGAATCTCTCTCTCCTGCTTTCTCGAGAGCTATGTTTGGTATGATCTCGTCGTTTGGT
TTTCTATCTGGGATCTTATTATCTCCCTTGCCATAGATAGAGCCAGGTCCATAAGGTTGCAACTC
CAGCTATAACGATGACTCCTCCAATTATGAACAATATCAGAATTAGGAGACTATGAACTAGTTTT
GGTTTGACCTTCGGCCGGATTTATGGTTTCTATGGGTGTTGATGGTATTTATGAGAGTTTTGTTG
GTATGGTATTTACTAACTCAGATAAAAGATAGAGAATGATTGGTTTTAACATCATTATAGCGAAC
ACCCCTATGGGTATTAACCAAACCAGGCGAATTCGAAACTTCATT
Found at i:152081 original size:13 final size:13
Alignment explanation
Indices: 152063--152093 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
152053 ATCCTTCCCG
152063 TTCTTCATCAGTT
1 TTCTTCATCAGTT
152076 TTCTTCATCAGTT
1 TTCTTCATCAGTT
152089 TTCTT
1 TTCTT
152094 AACGTAATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.13, C:0.23, G:0.06, T:0.58
Consensus pattern (13 bp):
TTCTTCATCAGTT
Left flanking sequence: Indices 151563 -- 152062
GATGGTGAAGCTTCCTTGGAGGGCTGCGGGTGTTGCTTCGCTAGCTTCCTCTAAGCTTCTAGAGT
TAGTCGGAAACCTTCTCTGGCAACCTCTGGTACGGGTAGGACTGAATCTCTCTCTCCTGCTTTCT
CGAGAGCTATGTTTGGTATGATCTCGTCGTTTGGTTTTCTATCTGGGATCTTATTATCTCCCTTG
CCATAGATAGAGCCAGGTCCATAAGGTTGCAACTCCAGCTATAACGATGACTCCTCCAATTATGA
ACAATATCAGAATTAGGAGACTATGAACTAGTTTTGGTTTGACCTTCGGCCGGATTTATGGTTTC
TATGGGTGTTGATGGTATTTATGAGAGTTTTGTTGGTATGGTATTTACTAACTCAGATAAAAGAT
AGAGAATGATTGGTTTTAACATCATTATAGCGAACACCCCTATGGGTATTAACCAAACCAGGCGA
ATTCGAAACTTCATTAACCATAGGAACCATAACCAATCCTTCCCG
Right flanking sequence: Indices 152094 -- 152593
AACGTAATGAGGAGGCCCATAGGGTGAAATCTTGAAAGCTCGAGATTCGGAACCTTCTTTCTTCT
CATTTCTCTCAAAGGTTCCGCTCATCCCAGTTAGCTCATATGGCAAGGAGATGGAGAAAAGAGAA
CGAAAACGCGGCAAAGGCGCAGCGGCGGCTGAAAGCCGCGGCTCGTAGGACATTTTGTTTTGAAA
GTGGGCCTTCGACCAAAGCACAACAAAGAAACGAATATAGAAACACACCAGCTTGTTCCCGCTGT
GCTTGGGGCTTACGAGTGGAACCGGCGCGCGCGCTATGCTCAGGGACCCGCAGCCTCATCTTGGT
CAGAGAAGGAGAAAAAAGGATCGTGGGGCCGAAGGACTACTTCGCAAGCTTCTTCTTTCTCCTTT
TATATGCAGCAGAGCCGTAGCCTGCTGCGCTCTCTTTGCCCTAAAAGCCGCAGGCCCGGTCAAAC
AAACCGTGGCTTTGACCAACTTGTTCTTCGGCCGTTCTACGGCGG
Found at i:156542 original size:13 final size:13
Alignment explanation
Indices: 156524--156550 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
156514 CTTAATTTGC
156524 AGATGACAGTGGA
1 AGATGACAGTGGA
156537 AGATGACAGTGGA
1 AGATGACAGTGGA
156550 A
1 A
156551 ATCGCTTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.07, G:0.37, T:0.15
Consensus pattern (13 bp):
AGATGACAGTGGA
Left flanking sequence: Indices 156024 -- 156523
TTACCGTTCCTTTGCAGGTTTATGTCATTTTGCAACATGTTGCGGCTTTTTCTAAATGGGAAGGA
ACTAGTGGAAATACTGCGTAACCATTTTGCGCCTCATCAACACTGCATAAACTTTCGCTGAGTGT
ATTCTAAAAATCCCCTTACATTAGATTACTCAAGGCTTTTCACCCTTATGGCGAATGTGTATATT
TTGTCTTTAACGAAGTATGAAAGGACTTAGAACATATGGAAAATGAAGAATGACCCTCACTTCCG
ATTCGACTTGTCTTAACAACGGGTCAACTCAACATACCAAGCTTCGCTAAGTTTACGCTAGGAGA
TAGCAATCTGTATGAAGATGTGAATATATTACACACATACATACTTTGTATTTGTTCTTGAATGC
CAGCTTCATCTCTTTTTTTGGGCTGATTTTGTACCTCTTCTGTTCCTTGCTACTGATTCTGAATG
GGCTGCGAGCATGCCTGTTCTGGAGTGGCTTAGCACTTAATTTGC
Right flanking sequence: Indices 156551 -- 157050
ATCGCTTCATCTTTGTTACTATTCTCCCCCATGGAATATTTATTCAAAGTGGAATGTCTGATTAC
TGCTCGGAAAAGAATCTAAAAAAAGTTCTTGTAGTATAAATGATGATACCTGTCTATTGGCTTTA
GTATTAGACAAATGATATCTTACAGGGAGATCTCGAGTATTCCTTTTCTAGATTATTCACCAAAA
GACTTGGAGTATGCATTGGGATGGAGCATGATATTAGACCTATATGTATCTACGTAAAAAAAATT
GAGCAGGGCCGGACGTGGACACTTTCAAATGAAACGGTGGTTGATACAACTAAAAGCATAAAGGA
ACGAACTTAGTTCGAAGTCCTTATTTATTTTAGCTAATACTGCAGGTATTAAAACGAAGTCCAAA
ACACTTTTAGATAACTATCAAAGTTGTATGGGACAGGCCACTGTTAATCTACATCTACCGTAATT
CTTTATTGAATACTTAGGAGACTGCGAGGCTTTAATACCGATATT
Found at i:157935 original size:19 final size:18
Alignment explanation
Indices: 157911--157949 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
157901 GTTTTGGATT
*
157911 TAGTTCTAGATAAAGAATC
1 TAGTTCCAGATAAA-AATC
*
157930 TAGTTCCAGATGAAAATC
1 TAGTTCCAGATAAAAATC
157948 TA
1 TA
157950 ATCTCAAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.41, C:0.13, G:0.15, T:0.31
Consensus pattern (18 bp):
TAGTTCCAGATAAAAATC
Left flanking sequence: Indices 157411 -- 157910
GGTGTTTAAAAGGTAAGTATAGGTACCATTATTCACAGACTGGAGTCCTGTTTTTCTAGGTTATT
TTCTCTAGACTTTAGTGATGACAACAGCCTTCTTACGCTAAAATGCTTGCAATAAGACCAAATTA
AAAATCTTATTCCTAAATGCTAAGGAGAGCACATACCGACCTTCCAGAAATAGCAGCACAGAACA
CTCAAGCTGATTAGGACAAGTATACCAAAAACTTAAAGGGGGACCGTTCGTTGGAAAAATTACCA
AATAAACAAAACATTAGTTCTGTTTAGTACACCAAGCACGCGATTCTGTGTAAACTGTCATATTT
CACGACAGCAGTTTGCTTCTGTTTCAAGCTGACAATTCAGGCTTAAAATTCCAATCTCGGATCAT
CCGAAGGTCTTCGTGAGAATGCCGAGGCGAACCTACGAAAACCGAAGACCCGCGATAGCTTGTCG
AGGCGGCGCACAACGCAGGCTTTCATCGAGTTCTAGTTTTGGATT
Right flanking sequence: Indices 157950 -- 158449
ATCTCAAGATCAAGATGAAAACAAAGGTCTAGAGAGTAAAATGAAAACAAAGGTCTAGTCTAAAG
TCTCAAGATTAAGTATCAGGCAAGCTTCGCGTTCTATTACTAGGCCGAAAGACTAATCTCAGGCA
GGGCGGTTATCAAGCAAGCTAAGCTTAGTTCATAGTTTGAGGGCAAATGCCCAGAAAGACATCTG
CTCTTAGCAAAATGTCGCGTTTTAGTCATGACCGAAGCTACTCTGACCTTTTCACAGATAGCTTC
GACAACGAAGCTTCATATGAATCATCATATGAATCACCATCTAAATCATCATATATAAGGCTTTA
GAAGAATTGCAATAAACGATAGGGCACTACTCGAAGTCTTGATCGTCTCAGCTTTAATGTCAAAT
GTAGCGTCTAGATTCACTTCGCGAGTAGTGGCTAACTTGGACTTGAAATAGTGTTATCTTGGTCT
ATATAGAAATCAAAATCTACACACAATGAACAAATTTGTTACTTT
Found at i:158239 original size:12 final size:12
Alignment explanation
Indices: 158222--158263 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
158212 CAACGAAGCT
158222 TCATATGAATCA
1 TCATATGAATCA
158234 TCATATGAATCA
1 TCATATGAATCA
* * *
158246 CCATCTAAATCA
1 TCATATGAATCA
158258 TCATAT
1 TCATAT
158264 ATAAGGCTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.40, C:0.21, G:0.05, T:0.33
Consensus pattern (12 bp):
TCATATGAATCA
Left flanking sequence: Indices 157722 -- 158221
AAACTGTCATATTTCACGACAGCAGTTTGCTTCTGTTTCAAGCTGACAATTCAGGCTTAAAATTC
CAATCTCGGATCATCCGAAGGTCTTCGTGAGAATGCCGAGGCGAACCTACGAAAACCGAAGACCC
GCGATAGCTTGTCGAGGCGGCGCACAACGCAGGCTTTCATCGAGTTCTAGTTTTGGATTTAGTTC
TAGATAAAGAATCTAGTTCCAGATGAAAATCTAATCTCAAGATCAAGATGAAAACAAAGGTCTAG
AGAGTAAAATGAAAACAAAGGTCTAGTCTAAAGTCTCAAGATTAAGTATCAGGCAAGCTTCGCGT
TCTATTACTAGGCCGAAAGACTAATCTCAGGCAGGGCGGTTATCAAGCAAGCTAAGCTTAGTTCA
TAGTTTGAGGGCAAATGCCCAGAAAGACATCTGCTCTTAGCAAAATGTCGCGTTTTAGTCATGAC
CGAAGCTACTCTGACCTTTTCACAGATAGCTTCGACAACGAAGCT
Right flanking sequence: Indices 158264 -- 158763
ATAAGGCTTTAGAAGAATTGCAATAAACGATAGGGCACTACTCGAAGTCTTGATCGTCTCAGCTT
TAATGTCAAATGTAGCGTCTAGATTCACTTCGCGAGTAGTGGCTAACTTGGACTTGAAATAGTGT
TATCTTGGTCTATATAGAAATCAAAATCTACACACAATGAACAAATTTGTTACTTTCTTCCAGAA
TATCTAAAGGGGCTTGACACCTTGTATTGCCGTGCCACCTGAGGGACGAGCATGCGTGTATAGCC
CTAGTAGGGCGGGTCCCAACCGACGAGGTGCTTCTACCTCACGGTGCGTTCCTGGTAATAAGTAA
GGTCTAAAGCACAAAAAAATTTCAGAAGTGTAGAGTACAACATAGAGAGAACCCGCTAAGAGTCT
CGAGACTCCAAATTCATCAACATAAGTGAACTGTATGACGACGCTTCGTAAAGACGCGCTTACGA
GCTGTCATTGAGTAAGCGCAAAGCGAGGGGCACGAAATAGACGGC
Found at i:159305 original size:18 final size:18
Alignment explanation
Indices: 159272--159306 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
159262 GCGCTTCTGA
159272 GAGGAGGGAAAAGAAGAG
1 GAGGAGGGAAAAGAAGAG
159290 GAGG-GGGAAAAGGAAGA
1 GAGGAGGGAAAA-GAAGA
159307 AGGCTTGGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (18 bp):
GAGGAGGGAAAAGAAGAG
Left flanking sequence: Indices 158772 -- 159271
TTGATCGGCCAAGGATGGAATAACAGCACAAGATCGCCAAATATTGATCTTGCAACTAGACTCAA
CCGGTCAACGAGGTAAAGAAGCCAGGGAGCTTCCGACATAGGGAGGAGGTCTGGTCGTGAGATCA
GATACCGTCCAGTTGGCAGAAGACGACGATTCGGGCCGAAACTTTCTTATAATAAGTAAGATAGG
CAACACAAGATGTGTGTCGCCGACCAGAAATCTAGACGTTTTTTGGTGCTGACTTTAGGGGTGGG
TGACAAAAGGCTGAAAAAGCCCCTCATCTTGACCATCGAAAGTACTTCAGGGGAAGACTTTTGGT
GCGCGCGTATTGGTCAATCGCGGAGTGGCGACATATGCCACTCGCGGAGTAGCAGAACATTTTGG
TGATAGCATAACTGCTGCAAAAGTCATGGGTTTGATGGCCTGGGCTTAAACTCTGCTTCGACACT
GGAGCCGTCTAATGAATAGGAAGAAACTATCACGTGCGCTTCTGA
Right flanking sequence: Indices 159307 -- 159806
AGGCTTGGAGCCTATTTCTTCCAATCCTACTTAGTCTCCCCTTCTTACCTTTTCTGTGAGGAGAC
TGTGTTCGATGCCACAGTCATATGTAGTGTAGGATCTTCACTATTTATTTCAACAATTACCATAT
ATATGTATGGTCCTTGCTTGGAGTTAGAAGATTCAGTGGTACTTCAGTAATTTACCAATTTCTTT
ATGCAATGAGTCGGAGTTTTTTCAAGGATTACTACATGTTCTATTTGCAGGGAACAGCTCTGCTC
TATACAACATATGCTATTTGCAGGGAACAGCTCTGCTCTATACAACATATGCTATTTGCAGGGAA
CAGCTCTGCTCTATATAACATATGCTATTTAAAGTGCTTTGCTTCGGCTAAGGAATGATGTTCTC
GATCCTCCTTTCTTATGAAGATATGCCGCTATTGGGGATTCATGCCAGAGCCGTAGTGCTGACAA
GAATCTGCATTGGATCTAAATAGAATTACTCCTTTTCCGTGGAAG
Found at i:159593 original size:38 final size:38
Alignment explanation
Indices: 159542--159661 Score: 231
Period size: 38 Copynumber: 3.2 Consensus size: 38
159532 ACTACATGTT
159542 CTATTTGCAGGGAACAGCTCTGCTCTATACAACATATG
1 CTATTTGCAGGGAACAGCTCTGCTCTATACAACATATG
159580 CTATTTGCAGGGAACAGCTCTGCTCTATACAACATATG
1 CTATTTGCAGGGAACAGCTCTGCTCTATACAACATATG
*
159618 CTATTTGCAGGGAACAGCTCTGCTCTATATAACATATG
1 CTATTTGCAGGGAACAGCTCTGCTCTATACAACATATG
159656 CTATTT
1 CTATTT
159662 AAAGTGCTTT
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
38 81 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (38 bp):
CTATTTGCAGGGAACAGCTCTGCTCTATACAACATATG
Left flanking sequence: Indices 159042 -- 159541
CTGAAAAAGCCCCTCATCTTGACCATCGAAAGTACTTCAGGGGAAGACTTTTGGTGCGCGCGTAT
TGGTCAATCGCGGAGTGGCGACATATGCCACTCGCGGAGTAGCAGAACATTTTGGTGATAGCATA
ACTGCTGCAAAAGTCATGGGTTTGATGGCCTGGGCTTAAACTCTGCTTCGACACTGGAGCCGTCT
AATGAATAGGAAGAAACTATCACGTGCGCTTCTGAGAGGAGGGAAAAGAAGAGGAGGGGGAAAAG
GAAGAAGGCTTGGAGCCTATTTCTTCCAATCCTACTTAGTCTCCCCTTCTTACCTTTTCTGTGAG
GAGACTGTGTTCGATGCCACAGTCATATGTAGTGTAGGATCTTCACTATTTATTTCAACAATTAC
CATATATATGTATGGTCCTTGCTTGGAGTTAGAAGATTCAGTGGTACTTCAGTAATTTACCAATT
TCTTTATGCAATGAGTCGGAGTTTTTTCAAGGATTACTACATGTT
Right flanking sequence: Indices 159662 -- 160161
AAAGTGCTTTGCTTCGGCTAAGGAATGATGTTCTCGATCCTCCTTTCTTATGAAGATATGCCGCT
ATTGGGGATTCATGCCAGAGCCGTAGTGCTGACAAGAATCTGCATTGGATCTAAATAGAATTACT
CCTTTTCCGTGGAAGGAAGATGGTACATTGAATCACCAGTCTCATTGGCCTCCAAAGCAAAGAAA
GTCCCCGGCCTTCTCTTGACCTGGTCATTTGGGATCATGTTTTGGAGAGGTCGTTATGCTGTGGT
CTGCCAGGAGAGGGAGCTATGAGGTAACTCTATGGCAGGTTATAGTTAATAAACTACCGTCCAGG
TCTACGATCGAATTGCCTTTACGCAGGAATGGCAGTATTCTGCTAAAGTGCAAGGAGATATTGGG
ACAGACAGCAGCCCCGTAGTTAACCACGCTACAGAAGAAGAGGCACGTGCGGCGATCGCTGCCTG
GCGGGTTCCGGCTGGCAGATTTTTTAGGCCTCAAAACACGAGGGT
Found at i:168235 original size:20 final size:20
Alignment explanation
Indices: 168210--168247 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
168200 AGGTAAATAC
168210 CCAAATCTCTACAAGCTTCT
1 CCAAATCTCTACAAGCTTCT
168230 CCAAATCTCTACAAGCTT
1 CCAAATCTCTACAAGCTT
168248 ATAATGAGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.32, C:0.34, G:0.05, T:0.29
Consensus pattern (20 bp):
CCAAATCTCTACAAGCTTCT
Left flanking sequence: Indices 167710 -- 168209
CTAAAACGCAGCCCAAAGAGAAAAAAGAATCTATAGATTTCTCTTGGAATGTCCTAGAACTTTTG
TCCCTTACTATGATTCGTTTGTTAGCACTAGGCCGTATTCTTTGGATACTGTAAGTCCTAGCCCC
GTTACAAAAGCCTATGGCCATGGGCGGTTTCCGGGAATCAGCGGGCGGTTGCCCACAGAGATTAG
AAGCTTGGCGTTAAGAAATTTCGATCCTCGCACGAGCACGGCAAGCACCTTCGGCGGATCCCTCT
TTTCGCGGATCTCATTCGCTGTCACACTTGAGGGTCGTCGCGGGAGCAGAGATGGAGGTGAAAAC
CCCTAAATTAGTCGGTGAACGCGCCGAGACGCAGGATCCGGACGACACAGGACCCAATACCTCTT
GCATAGAAGATGCGCAGGCTGAGGTGGGCTAGAGAGCTTGTCCTCGAACTTGGAGTCTATGGCTT
CTATAGCACAAGTTCCAGCCTAAAGAAAAGGATAAAGGTAAATAC
Right flanking sequence: Indices 168248 -- 168747
ATAATGAGTCCAGATAACCTAAAACGAGCTCGGCTGAAGATAAGGCACAAACCAGGCCATCGATG
GCACGGGTGAAACCTTAGTCTATGGCCTTAAAGGAAACTGATTCGTGGAAACGAGCGCAAGTTCG
AAGAATGAAAGCTAGAAATACGAACTAGCCAAAAAAAATAGTCGGCACACCCGAACCGGATAGGA
GAGCCGTCCCTGACTATAGCTTCTCCCCGGAATGAAATAGTCTAACAGGCTTTCAGACTACTTCT
AGAGCTATCTCTGAATTAAGTCTTTGGTGTTGGGCAATAAGTAGATGAACAAGCCTTAGACTTTC
AAAAGGCAGATCGCTTGGCTTTTCTACCCAATTAGAAAGAGAAAGGTAGTTAAAAACTCGATCCT
TTCTGAAGTCTTTAGCAAATTCTTCCACGGATGGATTCAGACTCAACAGAAGTGCCCACACAGCA
CTCCAACAAATGCTTTTTTGTCAGAAGGGTGTGCATTGCTTTTTT
Found at i:179059 original size:13 final size:13
Alignment explanation
Indices: 179041--179066 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
179031 AGCGCGGCAA
179041 TAGCACATCAGCC
1 TAGCACATCAGCC
179054 TAGCACATCAGCC
1 TAGCACATCAGCC
179067 GCGCTTCCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.38, G:0.15, T:0.15
Consensus pattern (13 bp):
TAGCACATCAGCC
Left flanking sequence: Indices 178541 -- 179040
TATTTTTCTCTTGTGGTGCAAGTTCCTAGCATTCCTTTCCTTGTTGTGCGAACGACGTAGGATGA
ACCCCGAGAAGTAGACATGATCATTCATTCATCCACTTGATTCCATTTTTTAAGCTTTGGTTAGC
TACACCGACCAACCCAGTGCAGCCTGCAAGAGAGTCCACAAAGAAGAAGGAAGAGGGGGGAGGGA
GGGGACAAGAGAAGGTCTGAGAACACCAGTAGCATGGAGGAGTCCTGTCAAGCAAATCAAGTGGG
GAGCTGAGCTGCCCGTTTGATTGGCTTCGCCCTGCTGGGCTAGGCAGTTTCTTCTCCTTCGCCCT
CCCCCAGGCCAGTCAAGCGTTTCACGCGACAATTACTTTCCGTCCCCGCACTTCCCTAAAAAAGA
GCTCTCCCGGGAAGCCCCTGTTGCCTTTCATTTGCTGCGCACGCAAAGTTGACCTTTCAGCCACT
TCGTTATGACGACTTCCGTATTTATTGCCAAAAGCAGCGCGGCAA
Right flanking sequence: Indices 179067 -- 179566
GCGCTTCCTATTTCTTCTTCCTAATGCCATTTCTCTTACGGGCCCTTCTTCGCTAAAGAGCTTCT
GAATAAGAGGCTTCGCTCCCTTCGCGCTGTTAAATTCTTATCTTAAATGAAGAAAAGACATTATA
TATCAATTTCATAATATACTCAATTAAATAGAATCTAAAAATAGATTAGCCGATAAATAAAAATC
CTTCGGTCCTTGGCGGGCGACGTCTTGCGTTAGAGAACAGAAATAGAGAATATAATTTTCGTAGA
AAATATAATTTTCGTAGAACAAGAACAAGAGATAGATAATATATGTAAATATATAAATACTGTAA
GATAGAAATACTATATAAGATCTAGATACTATAAGAAGAATATAGATACTAGCGAGCGGCCCTTC
CTTCGGGCTTTGCCCCGCGGATCAGCAATAAGTATATATAGATATAGTTCTTTCAGTCTTATGCT
TCTCTTCCTTAGTCTCACTATGCTTCCATTTCGCTTCGACCGAGA
Found at i:179331 original size:18 final size:18
Alignment explanation
Indices: 179305--179345 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
179295 AGAACAGAAA
*
179305 TAGAGAATATAATTTTCG
1 TAGAAAATATAATTTTCG
179323 TAGAAAATATAATTTTCG
1 TAGAAAATATAATTTTCG
179341 TAGAA
1 TAGAA
179346 CAAGAACAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.44, C:0.05, G:0.15, T:0.37
Consensus pattern (18 bp):
TAGAAAATATAATTTTCG
Left flanking sequence: Indices 178805 -- 179304
TGAGCTGCCCGTTTGATTGGCTTCGCCCTGCTGGGCTAGGCAGTTTCTTCTCCTTCGCCCTCCCC
CAGGCCAGTCAAGCGTTTCACGCGACAATTACTTTCCGTCCCCGCACTTCCCTAAAAAAGAGCTC
TCCCGGGAAGCCCCTGTTGCCTTTCATTTGCTGCGCACGCAAAGTTGACCTTTCAGCCACTTCGT
TATGACGACTTCCGTATTTATTGCCAAAAGCAGCGCGGCAATAGCACATCAGCCTAGCACATCAG
CCGCGCTTCCTATTTCTTCTTCCTAATGCCATTTCTCTTACGGGCCCTTCTTCGCTAAAGAGCTT
CTGAATAAGAGGCTTCGCTCCCTTCGCGCTGTTAAATTCTTATCTTAAATGAAGAAAAGACATTA
TATATCAATTTCATAATATACTCAATTAAATAGAATCTAAAAATAGATTAGCCGATAAATAAAAA
TCCTTCGGTCCTTGGCGGGCGACGTCTTGCGTTAGAGAACAGAAA
Right flanking sequence: Indices 179346 -- 179845
CAAGAACAAGAGATAGATAATATATGTAAATATATAAATACTGTAAGATAGAAATACTATATAAG
ATCTAGATACTATAAGAAGAATATAGATACTAGCGAGCGGCCCTTCCTTCGGGCTTTGCCCCGCG
GATCAGCAATAAGTATATATAGATATAGTTCTTTCAGTCTTATGCTTCTCTTCCTTAGTCTCACT
ATGCTTCCATTTCGCTTCGACCGAGAGGCCGAAGGATGCACTTATTTTGGTTTTTTGCCTCAGTG
ACTTAAGACGTGAAGCCATGAATCTGGGTAATATGCAAGAAGATGAAGCGGGAAGCAATCGAGAA
AAAACAAACAGCACTATCGAAAGAAAAAGACACTTCATTCAGGGTGTGCTCTTTTAGAGTGGATA
ATTCGGCGCATTGGGGGTAATTAGCTCAGTGGCTAGAGTGCTTCGTTTACACTAAGAAAGAAAGC
AGTTCAAGTCCATTATTACCTAAGGGTCAACAGTACATGTCATTT
Found at i:185909 original size:22 final size:22
Alignment explanation
Indices: 185884--185927 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
185874 ATCCCAAAGA
185884 TTTCACATTATCATTATTAAGC
1 TTTCACATTATCATTATTAAGC
*
185906 TTTCACATTCTCATTATTAAGC
1 TTTCACATTATCATTATTAAGC
185928 CGTCTAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.30, C:0.20, G:0.05, T:0.45
Consensus pattern (22 bp):
TTTCACATTATCATTATTAAGC
Left flanking sequence: Indices 185384 -- 185883
GAGTGGAGTGACACAAGATCTGCCTCTGGGCTTAAGTCAAGATATTTCTCTTCTTTCTTTACACA
ACAAATTGCTTTTTTTATTGACAAACTGGAAGAGGTTAACTAACAACCGTATCTGGAAACAACGA
TTAGTTGATATTGGTACTATCATGGCGCAGCAAGCTTTGGGTTGGGAATTCCATGGTGCCATGTT
AAGAGGCTCAGGAGTATGCTGGGATTCGCGAAAGACAGCACCTTACAATGATGACGTATTGTATT
ATCTAGATGATGATCTCAGATGCGACTCAGTAAGGGGTGAGACTTGGCAGGACTTGACTTCTAGT
TGAGTTCTTAGGCGTATGTATGTGTAGAATAACGTGTATGATCAGGCTCCACTTTCTACCTCTTT
TGCTCTATAGTGGAGGAAGTGTAAGTTTTCTCGATAATCTAGGATTCTTCATAAACTCTCTTAAA
CTCAAGCTTTTTAGGGTAGTTTAAATCTCACTTATATCCCAAAGA
Right flanking sequence: Indices 185928 -- 186427
CGTCTAATAATTTGGTCCTTGGAACCAGCTGGTATGACGAGGACATTCCAATCGTGATAATGTCT
AAGGATTTTGCTTTCTGGAAACTCTTTCATGACACGCCGCAAGGTAGTATCAGCTAGGAAAGCCC
ACTTAAAGGATTGGAGGAAATTAGGATATGAGGTCTTGAAGTCAACCTCGGTTTATAACTATCAC
TAGTTGGACCAATTAGAAAATCATCCATAGAAATAAATAATGTTTGATATAGAAAATCGGTTATT
ACAGCTGAATTTGGCATCTCTTTGGTTACGTCTCTAACTAGAGTATAGAAATATTTGTAATCAGG
AAAATCTTGAAATTGTTTGGAACTTAACCCTATATTCTTCCTAAAGGATTCAAGAATTCCGTTTA
TCATAGCCCTATTACCTCCACATATTTTTACTGCAGATTTATTCTAGACTTCCGCCTTGCCCTTC
TTTTCAAATTCGTCGTAGATTCCAAAGACCGATGCTTGCAATAGC
Found at i:199804 original size:23 final size:23
Alignment explanation
Indices: 199777--199822 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
199767 GTTTTTCCAT
* *
199777 TTTTATTTATCAAACCTTGAAGC
1 TTTTATTTACCAAACATTGAAGC
199800 TTTTATTTACCAAACATTGAAGC
1 TTTTATTTACCAAACATTGAAGC
199823 ATTGGGCCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.33, C:0.17, G:0.09, T:0.41
Consensus pattern (23 bp):
TTTTATTTACCAAACATTGAAGC
Left flanking sequence: Indices 199277 -- 199776
AAACCGGTGAGAAAATGCCTATGGTTTTTTTGACTAAAAGCGTTTGCGAAAGTTTCGTTAGTCTT
TAAGTAAGATGAAACTGGATCTAAAGGTTGTTTCTTTATCCAAAAATCTTAAGTAATTAAAACTT
GGATGGGGATTTGAGTTGATTCAAAATACATCATAGATATATTAGAAAGTATCCCGATGTGAAAA
CTATCTGGAATAAGATTTTGAAAAACGAGGTTAATCATGGGAAAGCGGATGTTGTTTTGGGTTAG
AATCGAGTCTACAAAAGATGGAAAAGCTAACCACTGGGTAGAAACGATGCAAAAACCTAAAGGCC
TGACTCTAGAGCATAGCCGATTTTCAGAACTGAGAAAGAGGGATTATTGACAGACTAGGCATCAC
GTTTAATGTATTGAAAGTTTCAAATACGTTGTGTTTCCTTAACCTGAATTTTTGAGACCCACTTT
AGAATTTGTAAGATGCAAATTTTGTCTTTTCTTTTGTTTTTCCAT
Right flanking sequence: Indices 199823 -- 200322
ATTGGGCCTAGGGCCGTCAGGTTCCTGGAGGCTTAGCTTGAACGAAGCAAAAGCCGGAAGTCGAG
GAGCGAAGCGCATTCGAAAAAGAATAATCTAAAGAAAAGTGTGATTTAAGCTATTTTTTTTTGCA
GGTTTTTTGCGCTTTGCGCCTTTATTAACGGAGAGGGAGATAATCAAGCCCAAGTAAGAAGCCGC
TTAGCCACTTTCTGGTTAGGCGCAGCTTCCTTCTCTTTTTATACGACTTGATTTTCGCTCTACTG
GCTAGACTTACTAGTGTACAGTTCATAAATAGAGCATATTTCAAGCCTTCTTTTGTGTTCCAAGC
ACCTTTCACTAACTATCACCCCTGTGTTCCTGAATCGTTAGTTTGGCCGCATCTTTCTGGATCAG
CCATGAATAATAGATCCTTGTTTTGGGAAAAACAGAAAGTCAAATCTAGCTAGAAGGCGCGAAAT
TAATTGAAGCTGGTCTTATCACCACGAGTAGTGGTGATCATAGGA
Found at i:207690 original size:13 final size:13
Alignment explanation
Indices: 207672--207697 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
207662 AACAAATCCA
207672 ACACTTCTACGAC
1 ACACTTCTACGAC
207685 ACACTTCTACGAC
1 ACACTTCTACGAC
207698 GGGGCTAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.38, G:0.08, T:0.23
Consensus pattern (13 bp):
ACACTTCTACGAC
Left flanking sequence: Indices 207172 -- 207671
GGAAAAGGAAGCCGGTGCTGCTTGCCCGGCGAAATTAACCAATCTTATGCGTGGACCTAAACAAA
AGTATGAAACCTTAATGGAAATCATACGAAACTTCAATATACTGATAGCAGCCTATGAAAAGCTA
AAGTCGAAATCGGGCTAGCGGTGCCCCGCTCCGGCAGGAAAAACACTGGGATATATGATATGAGC
CTAGAATCCCGTCACGAGGAGGATGCAGCGCTCCAGGAGATCAAGAACACTTGAAGGGATCTTTC
GTAGTTAGTAAACTTTGCCATTAGAAAACAATCGACCGACACTGCCTAGTCTCAATTTTACAAGA
CAAAATTGAGGATCAACGCTTTAGAGATTCTAGATTCAAGCTGTTCTAGGCAGAGGTTATCGTCA
ATCGAGGAGGACCCTCGCCTAGAGCAGGAGTCCTACAAGGTAGTCTCATATCATCCCTACTTTGC
AATATGTACCCAAACAAGCTAGATCTCAAAATTATAACAAATCCA
Right flanking sequence: Indices 207698 -- 208197
GGGGCTAAGACCAAAAGCAGAGTACAAGAAAGCTACCGCTATCCCGAAAACAGATTGGCAAGCTA
GAAACACGGCCATGCTGGCGGGCGAAAGAGCCCCAAAAGCTGAAGAAGTTTTCTTATTTCGAGCC
CGCGCGCGGTTCCCTGATACTTACAACGACTCCGGCTTTATGAGAGAGAATGCGGCTTGCGGGCC
CCGTTCCCATCCCGGGAAATAGAACTGATCTGCTAGCTATGTGCACGACACTAGGCCTACTGACT
TAGAGGGGTAAATTGGATTTCAAGAACTGCACAATCCTCTCTTTGATTTGATCGGCCAGATCGAT
CTCTCGAGCGAGCTCACGATAGCGAGTAGAAATTCGTCCGCGTAGCGCATGTACCGCAGGCCCAG
ACGCCTTTCTGAAAGAATAGAAAAGCACTACTAAAGCAAGGCCCACATAAAGAAATACGCAGAAA
TATCAAGGGATAGTTCAAATAATAAAATGAGGGATCTAATTCTTT
Found at i:211890 original size:12 final size:12
Alignment explanation
Indices: 211873--211897 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
211863 TATGAAAAAT
211873 ACTCATATCTGA
1 ACTCATATCTGA
211885 ACTCATATCTGA
1 ACTCATATCTGA
211897 A
1 A
211898 TGATAATGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.32
Consensus pattern (12 bp):
ACTCATATCTGA
Left flanking sequence: Indices 211373 -- 211872
GCGAATTCGAACCTTAAGCTGAACAACGGCTAAGTTAGGCTCTGCGCTATTACCTTAGCCTCTAC
CTGAGCGCCCAGGACAAACGGAGTCCGAAGCTTTCCGATGTGCGCGAAGCTGCTGTGCTTAAAGC
AGATTGTTTCATCTTTTTGCGCTTGAAGTGCCTGGTTCTAAGTGCTCGCGATAAGCTGCTTAAGA
CTTTCCACTCGCTCGACTTCAAACTTTATGCAAGCCTTGTCTTAACCGGATCCTTAGCGTGTCGT
TCTTTGCCCTGCTTGAAACGTGATCTTAAGACGCAGATTAGACGAAGAAGTATGTCTTACTGCTT
TCGAGATGTCTTAAGAAAGAACAGCGTGGTTTTTTTCAAGCATGTCTTAAGAAGAACATGTCTTA
AGTATGAACTTTTCAGAAAGACCATTGAATCATCATAAATAAGAGCAATATTTTCTTAGACTCAT
CATAGAGAAATAAGGATGAATCCTTATATATGAAATATGAAAAAT
Right flanking sequence: Indices 211898 -- 212153
TGATAATGAAATCAGCTACAATTACTACGACGAATTCCCTCAATTATTATTCGATATTCGGCAGT
CGCAGCATCATACATACAATTTCGTCTAAATATTCTTAATACTTCAATTCTTTTCATGAAAGCCG
CTTGCAGCATCATACAAATTCATAATAAATAGAAAGGATGAAAGGAAAAAAACGAAGCGCTTGGC
CATTGAGCCCACCGCTTCAATTAGCTGTTCTTCAGAGCAGCCGCCTTCCTCGGGGTCGTCT
Done.