123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_039751
Parameters: 2 7 7 80 10 50 500
Length:  212153

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1401--1434	17	2.0	17	94	0	59	38	2	11	47	1.55
51110--51152	21	2.0	21	90	0	68	37	16	27	18	1.92
52914--52942	14	2.1	14	100	0	58	24	27	13	34	1.93
58738--58763	13	2.0	13	100	0	52	23	23	23	30	1.99
63974--64005	16	2.0	16	100	0	64	12	18	12	56	1.67
78065--78099	17	2.1	17	94	0	61	20	20	22	37	1.95
79400--79443	22	2.0	22	95	0	79	45	2	29	22	1.65
79587--79622	18	2.0	18	100	0	72	38	22	11	27	1.88
81937--81964	14	2.0	14	100	0	56	0	21	35	42	1.53
91649--91681	16	2.1	16	100	0	66	30	18	15	36	1.91
107134--107159	12	2.2	12	100	0	52	42	7	42	7	1.62
121403--121432	15	2.0	15	100	0	60	33	20	13	33	1.91
131769--131793	12	2.1	12	100	0	50	44	8	24	24	1.80
142290--142338	24	2.0	24	92	0	80	34	8	14	42	1.75
143660--143685	13	2.0	13	100	0	52	30	23	30	15	1.95
145239--145269	15	2.1	15	93	0	53	9	19	29	41	1.83
151005--151034	15	2.0	15	100	0	60	53	6	26	13	1.64
151312--151352	21	2.0	21	100	0	82	46	14	14	24	1.82
151468--151532	27	2.5	27	82	5	80	12	27	12	47	1.77
152063--152093	13	2.4	13	100	0	62	12	22	6	58	1.58
156524--156550	13	2.1	13	100	0	54	40	7	37	14	1.74
157911--157949	19	2.1	18	85	4	51	41	12	15	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
158222--158263	12	3.5	12	83	0	57	40	21	4	33	1.74
159272--159306	18	1.9	18	88	11	54	48	0	51	0	1.00
159542--159661	38	3.2	38	98	0	231	28	22	17	31	1.97
168210--168247	20	1.9	20	100	0	76	31	34	5	28	1.80
179041--179066	13	2.0	13	100	0	52	30	38	15	15	1.88
179305--179345	18	2.3	18	95	0	73	43	4	14	36	1.67
185884--185927	22	2.0	22	95	0	79	29	20	4	45	1.71
199777--199822	23	2.0	23	91	0	74	32	17	8	41	1.80
207672--207697	13	2.0	13	100	0	52	30	38	7	23	1.83
211873--211897	12	2.1	12	100	0	50	36	24	8	32	1.84

Tables:   1

The End!