123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_069222
Parameters: 2 7 7 80 10 50 500
Length:  312146

Tables:   1   2   

This is table  1  of  2  ( 140 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5745--5776	16	2.0	16	100	0	64	37	18	12	31	1.88
36728--36768	20	2.0	20	100	0	82	29	24	17	29	1.97
37783--37809	13	2.1	13	100	0	54	44	7	0	48	1.31
38723--38754	15	2.1	15	100	0	64	53	0	34	12	1.39
55600--55644	22	2.0	22	100	0	90	42	0	8	48	1.34
62205--62264	9	6.4	9	79	7	57	36	6	0	50	1.29
62258--62299	10	4.5	10	77	17	54	61	7	0	30	1.22
62260--62302	17	2.5	17	85	14	61	65	6	0	27	1.18
62496--62521	13	2.0	13	100	0	52	15	15	0	69	1.20
66968--67094	15	8.4	14	71	24	73	31	0	0	68	0.90
67006--67091	3	29.7	3	76	19	85	36	0	0	63	0.94
67169--67210	21	2.0	21	100	0	84	33	9	23	33	1.87
67620--67676	29	2.0	28	86	3	78	22	8	7	61	1.50
67984--68019	17	2.1	17	100	0	72	41	11	5	41	1.64
68017--68050	16	2.1	16	94	0	59	52	0	14	32	1.42
79696--79739	22	2.0	22	100	0	88	59	4	9	27	1.48
89408--89463	3	18.7	3	83	7	69	71	1	0	26	0.96
113702--113731	15	2.0	15	93	0	51	13	30	13	43	1.82
118851--118893	18	2.4	19	81	18	56	18	18	25	37	1.94
147439--147464	12	2.2	12	100	0	52	76	0	0	23	0.78
147945--147979	18	1.9	18	88	0	52	71	2	8	17	1.23
152066--152102	15	2.5	15	95	4	67	67	0	5	27	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154001--154080	40	2.0	40	100	0	160	37	10	7	45	1.66
154868--154902	17	2.1	17	100	0	70	42	11	0	45	1.40
154896--154932	18	2.1	18	100	0	74	29	10	10	48	1.72
157555--157580	13	2.0	13	100	0	52	38	0	0	61	0.96
160004--160033	15	2.0	15	93	0	51	40	13	10	36	1.78
160105--160144	20	2.0	20	100	0	80	30	10	0	60	1.30
160105--160160	20	2.8	20	89	7	71	28	8	0	62	1.25
160156--160183	13	2.2	13	100	0	56	53	0	0	46	1.00
160190--160245	16	3.2	16	81	18	76	35	0	0	64	0.94
160202--160245	20	2.2	20	100	0	88	34	0	0	65	0.93
160190--160302	36	3.1	36	82	6	120	38	0	0	61	0.96
160154--160254	16	6.2	16	74	18	66	42	0	1	54	1.18
160251--160306	21	2.7	21	91	0	94	35	0	0	64	0.94
160419--160555	19	6.8	19	80	12	98	36	0	0	63	0.95
160453--160725	2	150.5	2	64	19	91	42	0	2	55	1.12
160398--160555	47	3.2	48	76	16	142	35	0	0	64	0.94
160431--160663	97	2.4	97	83	9	266	38	0	2	58	1.12
160202--160565	19	19.4	19	65	22	71	35	1	0	62	1.06
160472--160637	78	2.1	77	82	11	205	39	0	3	57	1.14
160641--160679	11	3.5	11	80	13	53	41	0	0	58	0.98
160685--160727	15	2.8	15	92	3	68	58	0	0	41	0.98
160756--160812	13	4.2	13	80	12	69	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
160742--160809	29	2.4	29	92	4	113	45	0	0	54	0.99
160741--160810	16	4.8	16	78	15	71	45	0	0	54	0.99
160807--160841	15	2.3	15	95	0	61	57	5	5	31	1.46
160832--160883	21	2.3	23	87	9	72	69	17	0	13	1.19
160832--160883	12	4.6	12	83	11	74	69	17	0	13	1.19
160863--160892	14	2.1	14	100	0	60	76	13	0	10	1.01
161209--161242	17	2.0	17	94	0	59	32	11	11	44	1.77
161734--161796	19	3.0	21	90	6	94	15	9	7	66	1.42
161775--161803	14	2.1	14	100	0	58	27	6	6	58	1.50
161767--161810	21	2.0	22	86	4	63	27	6	6	59	1.49
161799--161877	2	44.0	2	76	20	86	46	0	0	53	1.00
161796--161876	24	3.4	24	82	14	114	45	0	0	54	0.99
161799--161986	25	7.0	28	67	18	107	52	0	2	44	1.15
161796--161978	22	8.1	22	79	17	107	52	0	2	44	1.15
161874--161946	9	8.4	9	76	19	75	56	0	6	36	1.26
161879--161946	19	3.4	19	93	6	109	57	0	5	36	1.23
161825--161950	9	12.9	9	72	18	74	53	0	3	42	1.19
161941--161984	14	3.1	14	87	9	63	56	0	0	43	0.99
162159--162193	17	2.1	17	88	0	52	8	8	0	82	0.83
164506--164537	14	2.3	14	100	0	64	18	9	0	71	1.12
190209--190251	18	2.4	19	81	18	56	37	25	18	18	1.94
195371--195400	15	2.0	15	93	0	51	43	13	30	13	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
220400--220445	21	2.2	21	84	7	58	23	13	0	63	1.30
222891--222927	19	1.9	19	94	0	65	29	8	0	62	1.24
223982--224029	24	2.0	24	100	0	96	37	16	12	33	1.86
225383--225430	16	3.0	16	96	0	87	18	18	4	58	1.55
239654--239689	18	2.0	18	88	0	54	33	11	11	44	1.75
258876--258904	14	2.1	14	100	0	58	34	6	24	34	1.82
269598--269633	18	2.0	18	100	0	72	33	16	11	38	1.84
271448--271498	13	3.8	13	81	2	66	23	11	1	62	1.39
271529--271566	14	2.9	14	88	7	53	60	0	13	26	1.33
272944--272996	20	2.7	19	85	8	70	35	1	15	47	1.56
273215--273245	15	2.1	15	100	0	62	32	6	6	54	1.51
294184--294218	17	2.1	17	100	0	70	34	11	22	31	1.90
295027--295095	21	3.1	21	76	10	75	56	7	23	13	1.61
295027--295095	24	3.0	23	81	8	88	56	7	23	13	1.61
297436--297470	15	2.3	15	90	0	52	40	25	8	25	1.84
300192--300232	21	2.0	21	100	0	82	85	0	0	14	0.60
300397--300430	17	2.0	17	94	0	59	26	8	11	52	1.67
300745--300777	16	2.1	16	88	11	50	75	3	9	12	1.14
300881--300929	23	2.1	23	100	0	98	34	4	8	53	1.50
300931--301000	19	3.7	19	90	7	108	58	0	1	40	1.07
304859--304890	16	2.0	16	100	0	64	18	18	6	56	1.62
305391--305464	6	12.8	6	73	9	57	72	2	2	21	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
305381--305466	18	4.6	19	76	15	81	69	2	4	23	1.18
305391--305457	5	12.0	5	75	24	55	73	2	2	20	1.10
305379--305466	38	2.3	38	82	5	108	69	2	4	23	1.19
305462--305565	2	55.0	2	66	17	53	39	0	5	54	1.24
305483--305558	17	4.5	17	73	15	77	38	0	6	55	1.26
305481--305578	19	5.6	18	71	17	71	35	0	6	58	1.23
305507--305641	12	10.9	12	70	22	84	26	0	6	65	1.22
305471--305581	50	2.3	50	96	3	208	36	0	5	58	1.21
305552--305653	21	5.0	21	73	12	95	22	0	6	69	1.18
305557--305658	27	3.8	26	82	8	98	21	0	6	70	1.16
305631--305665	8	4.4	8	92	0	61	22	0	2	74	0.95
305502--305653	50	3.4	43	78	13	125	26	0	6	65	1.21
305615--305666	16	3.4	16	79	15	65	23	0	5	71	1.07
305506--305659	26	5.8	27	72	14	90	25	0	6	66	1.20
305729--305759	16	1.9	16	93	0	53	29	12	0	58	1.35
305725--305779	21	2.5	22	85	8	67	29	9	3	58	1.46
305774--306258	7	69.0	7	68	18	183	40	0	3	55	1.22
305725--305786	22	2.7	22	82	9	63	30	8	3	58	1.43
305779--305954	15	11.6	16	70	23	71	42	0	0	57	1.03
305773--306047	50	5.5	52	73	15	155	39	0	0	59	1.06
305777--305877	13	7.5	13	77	16	73	43	0	0	55	1.06
305820--306052	67	3.6	64	77	14	235	38	0	0	60	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
306089--306113	12	2.1	12	100	0	50	40	0	0	60	0.97
306147--306184	12	3.0	12	85	14	58	42	0	18	39	1.50
306214--306254	13	3.4	12	93	6	66	51	0	0	48	1.00
306201--306270	20	3.6	19	77	9	70	51	1	1	45	1.18
306302--306383	34	2.3	35	85	12	105	52	4	2	40	1.36
306321--306391	27	2.5	28	88	6	99	49	5	0	45	1.26
306390--306421	10	3.2	10	90	0	55	43	0	0	56	0.99
306413--306476	20	3.2	20	84	4	94	29	7	1	60	1.34
306457--306485	13	2.3	13	94	5	51	34	6	0	58	1.25
306459--306508	21	2.3	21	83	10	57	42	4	0	54	1.19

Tables:   1   2