Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_069222
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 312146
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Warning! 71 characters in sequence are not A, C, G, or T
File 1 of 2
Found at i:5766 original size:16 final size:16
Alignment explanation
Indices: 5745--5776 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
5735 TTATCAAATT
5745 CTTCTGATAAGACTAA
1 CTTCTGATAAGACTAA
5761 CTTCTGATAAGACTAA
1 CTTCTGATAAGACTAA
5777 TTACAGTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (16 bp):
CTTCTGATAAGACTAA
Left flanking sequence: Indices 5245 -- 5744
TTAATTTGATAACCTATGCTTATGCGCCAATTTACACAGTCCACGACAACTTTATTACAACTGCA
AGTTATTGCGAATTGATCCCTATAATATATATATATGTATTTAAAGAATTGAAATCACCACTCGA
ACTCATTAACATATTAATCGATCTTAACCTTATTAGGCCAGTTTTATCTAATTACATGGATATCA
AAGATAATGAATGATTTCTTTAAAAAGAAAAGATGACTGGTTTTCTACCATAAAACCCGGGTGTT
ATCACTCTGTATACTACCCTATTCCACTACATCACCTTAAAAGCATATTAGAAGAGTTAATACCT
AAGTCAATAAGCAAGAAAGAGAAAGTAACTTGGGATAGACGGATCTCGGAAACTATTGCAGCATA
CGAAGCATATGTTATGTTATTGATATATGCGGGTCTTTCAAAACAGTTATTGAAGGAGGGTATTT
ACATGAAATAAATTGAAGTTATTATAAAAAAAAAATTATCAAATT
Right flanking sequence: Indices 5777 -- 6276
TTACAGTTTACATTTTTAATGATTGAATGTTTGGATTAAAAAAAAAGGGTGCTTTATGATTTTTA
GGTCGATTTTGGTAGGGCAGCTACTTGCCTGAATGTAGCCATTCCACAATGGCGAGGCTCGCACT
CTGAAAAGAGTGTGAGGAAAGAAGAGTAGGGTATATGTGGGCTTCTTTCGCTTACTAATTAGGGG
AGCAGAACTAGATAAAGCTATCTCCGTTGGTTTACTTCCTGCTGTCTCAAAAGTAGCAATTCCAA
TCTGTGAGGTAATATATAGTTTATTATGATTATGAATAAGACACTCTTAGTAGTCCACTAAGCAA
GGAACCTTCCAAATATCCCCCACTTGGTATATTTAGAGGGTACTCTACTTCTTCTTAAACTTAAA
GAAATAGCAAGATCCCTCTTACTAACTGGAATAAATGAATTAGTAGATTTACGCGTTATCCATCT
TTCTTTTTCTCAGCTAACTCTCTTTCCCTCTCTGCCAATATAGAA
Found at i:36753 original size:20 final size:20
Alignment explanation
Indices: 36728--36768 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
36718 GAAAATAGCT
36728 GATCAATGAACATCGTCTTC
1 GATCAATGAACATCGTCTTC
36748 GATCAATGAACATCGTCTTC
1 GATCAATGAACATCGTCTTC
36768 G
1 G
36769 GCGGCTCCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.29
Consensus pattern (20 bp):
GATCAATGAACATCGTCTTC
Left flanking sequence: Indices 36228 -- 36727
CAGCCATAGCGCGGTATACTGAACACAAATCCCACTCTTTCTCCCGGCAAGCAAAACAAGTGAAG
ATGGATGAGCGCCAACTCCCACATTCCATTTCCTAGATCAGTAAGTTTATTTAGGCTCTGCTCCC
GATGAATGAGTCACTAAAGACTGAAGATGTAGCTACCAGTTCCTTGCTTCTCCACTGGTCTGGCT
AATCCATGATAGAAGGGCTACCAGCCATAGCGGTGAATCCTGACCATTCAGAAAGGGTGGTGGAA
CTCGTTGCCTATGGCGACGTATATCAAGAGGTGTCCGGTTCAGAAGTTGAGACCGAATCTATTCC
GGAAAGCGTCTTCACTCCCGGCTTCTGCTCCTCATGCAGTGGTTAGGCGGGTATAGTACGGTCCC
GATGATCGAATGTTTTCTTCCACTCGTCCCCGTGTCGACTATTTCCTGAGGGCTTTTCTCTTCTG
ACTTTCCTTTTCAACCGGAAAGAACATCGAGATTGGAAAATAGCT
Right flanking sequence: Indices 36769 -- 37268
GCGGCTCCTATCACTAGAGTATGAAGGGCTTTATGCCGTGCCTCTCCTTTAACCGAAAAACCGGA
AAAGAAAGAGGGTTCGCTCTTGGCCTATTAGTTGGCTTAGCCGATATGAGCTTATATAGTCTCAC
AAAAATCCTAACTACATACCTCTGAAATGAAGAACATAATCCAGAACTTGGGCAAAGTGGGGACT
CTGCGTTCCCTGATTGACGAGCTCTAAATAGAGTGAATTTAAAGAGGGAATGCTTCCTTTTTCTC
TAAAAAAGAGACGTTCGGCGACGTCGTGTAGATTGACCCCTGTTGGTAAGTTCACATTTGCAGTA
GTATCTTTATATACTCTCAAAAGAATTTCTAGTTGCTTAACAATATTCTCCTTAACAACATCTAT
TGCTAAATCAGTTATTTTGGGTTCCATATTGATACTATTCTATTCATTTGATGGATCATTTGGCC
AGCTCTAACGGCTACAAGAATAGCTACAGGCAAAGCCAAACCCAT
Found at i:37801 original size:13 final size:13
Alignment explanation
Indices: 37783--37809 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
37773 AATATTATTA
37783 TATAACTATAATT
1 TATAACTATAATT
37796 TATAACTATAATT
1 TATAACTATAATT
37809 T
1 T
37810 TATATATTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.48
Consensus pattern (13 bp):
TATAACTATAATT
Left flanking sequence: Indices 37283 -- 37782
CGGCAACGAGTTGATCCATAATTAGTATTACATTTTAGTGCTTTTAAAGAAGACCGCCAACTCGT
ATCCCGAAGATACAAGCAAAACGCCCGGTCCTCTTCTCTTGCGTCGAAGCTTTTTCTTTTTAGTT
TACGTAGTGTGGTGAGGTTTTTCCTGACATAAGGAGTGGGAAATTTTGGAAAAAGCCGAAACGGA
ACTAACGGGGATTTTATACTCCGTGCTGCGAAACGGATTCGGCCAGTACAATACTGAGTCTTATT
GAGGCCATGAAGACGGACAGCGCTTTTAGCCTGCCTGCCTATAGGGTTCTTTTCGATCTTGTACT
TTACTAAGGTACACGGAACACTAACCCAATCTCGATGAAACTACAATAAACTACATCAACAACTT
CTTTCTTTTTCTCTTGTTTCTGATCTGTATTTTTTAAGTAAAGAAAAGACTTATTTGATTTCTGA
CTTTCTCTATACTTGTTTTTTTTATATAAAAAAAGAATATTATTA
Right flanking sequence: Indices 37810 -- 38309
TATATATTAATTTTGTTTAAGATCAAGTTCTATAGGATATAAGACTAGCTTACTTACTCTATTCC
CCCTCCTTTATCCGCACGGCAAGCACACAGCTTGAGCGAGTAACCCTTGTGTCTAAATAAAGGGT
CCGAGTGAGAAAGATTGAAAGTGAGTTAAGGGCTTCTTTCCTGTCTCGTTAGGACTTACAATTGA
GCGAAGGGCGTAAACTCGAGCAAGAGCCTTTTCCTTTCTTCGCTATGTAAATAGATGACCTCCAA
GACCTGGAGAAGTCATTTATTCTCCTAAAGAAAGAAAGTTGTATGTATATACAAATGAAAGAATC
AGTTTCCTCAAAAACAAAAAATAAAATTGAATAAAATAACATGACGAATCCTCTTTTTTCACGGT
GCCGACTCCCCAACGAACGAGCGACTGCCAGAATCGAACTGGGCATAGGCGGATCGAAGCCTATC
TCTTCCAAAAAAAAGAGTCGCTTTTTGGTAACGCAGTTCGGTTGG
Found at i:38743 original size:15 final size:15
Alignment explanation
Indices: 38723--38754 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
38713 ATTCTTGCTC
38723 AGAGGGAGAATATAA
1 AGAGGGAGAATATAA
38738 AGAGGGAGAATATAA
1 AGAGGGAGAATATAA
38753 AG
1 AG
38755 GGGGCGACTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.34, T:0.12
Consensus pattern (15 bp):
AGAGGGAGAATATAA
Left flanking sequence: Indices 38223 -- 38722
ACTGCCAGAATCGAACTGGGCATAGGCGGATCGAAGCCTATCTCTTCCAAAAAAAAGAGTCGCTT
TTTGGTAACGCAGTTCGGTTGGCAAGTTAAGCCTCCCTACGTCTGCGATCCGGTAGACCACCGTA
AAAAAAAGTTAAGAAGGATGTTGCCAGTCCCAGTTTTGAATACGGCGGTGCAATTCTCTAGACCA
GTAGGCCTTCTTACCGAAATTACTTACGTTGTCGTGAATACGCATTAATTCTTCGACCGTCATTG
GTCGCTTTTTACTTTTTCCCTTCCCACCAGGGAATAAGTGTTCCCGAATTAAGGGATTCTCCGGA
TCCCACGGATCCCTGGGGTAAAGCTCCCTCAGCCTTTGTATAATGTTTTTATGAGAAACGGGTCC
GGAGCCGGTGCTGGCGCCTGCGGAAGCGCCTCTTGAGCCACCGGCTGTTGTTGTTCAATAGAAGC
GCCCCCCGGAGAAAATAATTGTCTTAGCACTTCGAATTCTTGCTC
Right flanking sequence: Indices 38755 -- 39254
GGGGCGACTCAACGGGGGCAGGATTGGGTTCAGATGGACCAGCTTCCTCCACCGGGGAAGCGACT
GGACCAGGCTGATTAACCTCAACGGACTGCTCCCTTGGGAGATTAGGAGCCTCTCCTCCTTGCGG
CTGTTCGACCCCGTTTGGGGCCGGTAGGGCTTGAGGCCCAGTAGTCTGATCTACTTCTGATTCAT
TGGATAAATTGAGATACTTTGTCCAACTGCCGGAGCTTGAAGATTCCTCTGTCGTAGAATTCGCA
TTAGGCCCAGTGGGTGGCATCATATGATGCCAGAATTCCTGCGCCAAAAAAAGAGTAACCAAAAA
ACCAACGGCCGTAGCCATACTCTCCGAGTATCCCATTTTAAATAAGAGACTAGAGAGGGCCCGAC
GCCCCATAGAGAACCCAACCTTTTCAAGTAAGGCGGGAAACATTTCTAAAACCTCAGTGCAGAGA
CAAAGAATATACACAATCAAAAGGAGAGTGAAACAAAATAATACA
Found at i:55625 original size:22 final size:22
Alignment explanation
Indices: 55600--55644 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
55590 CGTAGCGTGG
55600 AAAGTATTTATTATATTATGAT
1 AAAGTATTTATTATATTATGAT
55622 AAAGTATTTATTATATTATGAT
1 AAAGTATTTATTATATTATGAT
55644 A
1 A
55645 TTGTTGTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.42, C:0.00, G:0.09, T:0.49
Consensus pattern (22 bp):
AAAGTATTTATTATATTATGAT
Left flanking sequence: Indices 55100 -- 55599
GGAAAGAAATTAATGGGATTCCTTTTTTCGAAAGAAAGAACTTAGGAGAGCTATTCTATTAAGGG
CTTTCTTTCCTACTCAGCTTGGGTCGTAAGTTAGCCGGCCATACCGCTTACATGCTATTGTAATC
GGCAAGCCTCCTACCAACTCCAATTCGGTCAGTGGTCAGTTAGTGCTCACCCGACCATTCTTCTC
TCGTACTCCACCCAACACTCTGTATTTCGAAACCTCTTAATGGAGAATCACACCTTCTTTTCACT
TCTGCCGCTTTGATCTGTTGTGAGCTTTCTTCTCTTATGAAAGAAATAGTTACCGTCGCAAAGGC
TTCGATCCCTTTCGGGATTGGTGATTACCTGCATGGGCAGATCGAAAACATAGTCCGACTTGCAT
GTGTTAAGCATATATATCCGAAGTAGCATGATTGGAGCTTCTTATTTAGGCTACTACCTAACATG
TTCTTGCTCTTTCTTAGTTAGATAGTAAGCAAGATCGTAGCGTGG
Right flanking sequence: Indices 55645 -- 56144
TTGTTGTTTTGTTGTAAACCTGAAAAATAAAAATATATAATTTATAGGCTATATATGACTTCCAT
TTCGATCTTCCACCTTAATCCTAGTACACGGAACACCAAACGGAGACCTGCACTGTGGACGAAGG
GTTCTCAACCAATCTCGCACTTGACACGCAAAGCAATAAACAGCAGTCTATCTTCACAGAGAAAG
AGAAGGATCTTGGGCAAGGGGTTCCCGGCTTCGCGAGACCTTTTCGATCTGCTCTAGGCTAAGCT
CAATGGGGCCTTGATTGATGCCAATCTCTTAGTCTGATTCAGATAAACTGTGAACCAAGACATGA
AAAAGAACGAACTCAAAGCGAATTCTTTAATATGAGATCTTCTACCCTATGTAGGCTTGCTTCGC
ATAGGCTACACAAGCTTCGGTGCGGTACACGGAACACAAACTTAATATCAATGAAATTAAGTACA
CGCAACTACGCCTGTGAACTCGGATAGCCTTTAAGCATTCCTTGA
Found at i:62219 original size:9 final size:9
Alignment explanation
Indices: 62205--62264 Score: 57
Period size: 9 Copynumber: 6.4 Consensus size: 9
62195 GAAGATGCCT
62205 TATCTTATA
1 TATCTTATA
62214 TATCTTATA
1 TATCTTATA
*
62223 TATMTWWTATA
1 TATCT--TATA
**
62234 TATAWTATA
1 TATCTTATA
* *
62243 AATATTATA
1 TATCTTATA
62252 TATCTTATA
1 TATCTTATA
62261 TATC
1 TATC
62265 AAAATATATC
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
9 35 0.83
11 7 0.17
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.50
Consensus pattern (9 bp):
TATCTTATA
Left flanking sequence: Indices 61705 -- 62204
TCCGAGAGTTATCAGTATTTATCAAATCTGTTCCTATCTAACGGAACGCTATTGGATCAAATGAC
AAGGGCATTGTTGAGAAAAAGATGGCTTTTCCCGGATGAAATGAAAATTGGATTCATGTAATAGG
AGAAAGGTTTCCCATTCATTAGATAGAGAAGATCACCAAGATTTCTTGATCCGCTGCCGAACTTA
TTCCAAGATCTCTTATTGAATTGCTCATTCAATGAGCATTCTCAATATTATGCCTTATTATGCCT
TGAAGAGGATTCGAACCTCCACGCTCTTTAGCACGAGATTTTGAGTCTCGCGTGTCTACCATTTC
ACCACCAAGGCATCTTGAAAGTGAATCGTATTCCATGAATATGATATCTATCTAGTGTGATGTAT
GGAATATATGACAAAGGCGGAGTCTTGGAGTATTTCTATTGATCGGTCATGTCATATAGGCCCGA
GTCGGACATCCAATTGCTTCGATTTGAATTATCCGGAAGATGCCT
Right flanking sequence: Indices 62265 -- 62764
AAAATATATCAAAATAAAAATTATATCAAAATATAAAAAAATGGACAATCAAACCCATTTCTCGA
TTCAATAGAAGCCCAAAGAGGTGAATAGAATAGGGTCCCAAATAAGGAGAGATATATATGTAAAA
AGCAGGTCCGATTACGCCTATTCCTAATCCTAAATGGAATGTAACGACGGAGGGATCCATATGTA
AACATAGTATCTATTTAGATACGCTCGAATGACCCCTTCTTATTCTTATTTCTTATTCTTATAAT
GAGAATGTATATAAGCCTATTCCGGTCTGGTCCGGTATGGAATGAACTTATAATCATGGAATCGA
CTCGATTATCAGATTATAGATTATAAGTTCATAACCCTAGCCCATTCCCATTTTGGGCGGAACAG
ATCTACTAATTCTTTGATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAGATTCTAGAAGC
TAAAAAAGGGTATCTTGAGCAATTTCAATAATCGGGTTCATTGAT
Found at i:62273 original size:10 final size:10
Alignment explanation
Indices: 62258--62299 Score: 54
Period size: 10 Copynumber: 4.5 Consensus size: 10
62248 TATATATCTT
62258 ATATATCAAA
1 ATATATCAAA
62268 ATATATCAAA
1 ATATATCAAA
62278 ATA-A--AAA
1 ATATATCAAA
*
62285 TTATATCAAA
1 ATATATCAAA
62295 ATATA
1 ATATA
62300 AAAAAATGGA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
7 5 0.19
8 1 0.04
9 1 0.04
10 20 0.74
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.31
Consensus pattern (10 bp):
ATATATCAAA
Left flanking sequence: Indices 61758 -- 62257
GGATCAAATGACAAGGGCATTGTTGAGAAAAAGATGGCTTTTCCCGGATGAAATGAAAATTGGAT
TCATGTAATAGGAGAAAGGTTTCCCATTCATTAGATAGAGAAGATCACCAAGATTTCTTGATCCG
CTGCCGAACTTATTCCAAGATCTCTTATTGAATTGCTCATTCAATGAGCATTCTCAATATTATGC
CTTATTATGCCTTGAAGAGGATTCGAACCTCCACGCTCTTTAGCACGAGATTTTGAGTCTCGCGT
GTCTACCATTTCACCACCAAGGCATCTTGAAAGTGAATCGTATTCCATGAATATGATATCTATCT
AGTGTGATGTATGGAATATATGACAAAGGCGGAGTCTTGGAGTATTTCTATTGATCGGTCATGTC
ATATAGGCCCGAGTCGGACATCCAATTGCTTCGATTTGAATTATCCGGAAGATGCCTTATCTTAT
ATATCTTATATATMTWWTATATATAWTATAAATATTATATATCTT
Right flanking sequence: Indices 62300 -- 62799
AAAAAATGGACAATCAAACCCATTTCTCGATTCAATAGAAGCCCAAAGAGGTGAATAGAATAGGG
TCCCAAATAAGGAGAGATATATATGTAAAAAGCAGGTCCGATTACGCCTATTCCTAATCCTAAAT
GGAATGTAACGACGGAGGGATCCATATGTAAACATAGTATCTATTTAGATACGCTCGAATGACCC
CTTCTTATTCTTATTTCTTATTCTTATAATGAGAATGTATATAAGCCTATTCCGGTCTGGTCCGG
TATGGAATGAACTTATAATCATGGAATCGACTCGATTATCAGATTATAGATTATAAGTTCATAAC
CCTAGCCCATTCCCATTTTGGGCGGAACAGATCTACTAATTCTTTGATTCCAGTTAGTAAGAGGG
ATCTTGAACTAAGAAATAGATTCTAGAAGCTAAAAAAGGGTATCTTGAGCAATTTCAATAATCGG
GTTCATTGATATTCCTGGTATAGTAGATGCTATCACACATACAAT
Found at i:62289 original size:17 final size:17
Alignment explanation
Indices: 62260--62302 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
62250 TATATCTTAT
62260 ATATCAAAATATATCAAA
1 ATAT-AAAATATATCAAA
62278 ATA-AAAATTATATCAAA
1 ATATAAAA-TATATCAAA
62295 ATATAAAA
1 ATATAAAA
62303 AAATGGACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 4 0.17
17 12 0.52
18 7 0.30
ACGTcount: A:0.65, C:0.07, G:0.00, T:0.28
Consensus pattern (17 bp):
ATATAAAATATATCAAA
Left flanking sequence: Indices 61760 -- 62259
ATCAAATGACAAGGGCATTGTTGAGAAAAAGATGGCTTTTCCCGGATGAAATGAAAATTGGATTC
ATGTAATAGGAGAAAGGTTTCCCATTCATTAGATAGAGAAGATCACCAAGATTTCTTGATCCGCT
GCCGAACTTATTCCAAGATCTCTTATTGAATTGCTCATTCAATGAGCATTCTCAATATTATGCCT
TATTATGCCTTGAAGAGGATTCGAACCTCCACGCTCTTTAGCACGAGATTTTGAGTCTCGCGTGT
CTACCATTTCACCACCAAGGCATCTTGAAAGTGAATCGTATTCCATGAATATGATATCTATCTAG
TGTGATGTATGGAATATATGACAAAGGCGGAGTCTTGGAGTATTTCTATTGATCGGTCATGTCAT
ATAGGCCCGAGTCGGACATCCAATTGCTTCGATTTGAATTATCCGGAAGATGCCTTATCTTATAT
ATCTTATATATMTWWTATATATAWTATAAATATTATATATCTTAT
Right flanking sequence: Indices 62303 -- 62802
AAATGGACAATCAAACCCATTTCTCGATTCAATAGAAGCCCAAAGAGGTGAATAGAATAGGGTCC
CAAATAAGGAGAGATATATATGTAAAAAGCAGGTCCGATTACGCCTATTCCTAATCCTAAATGGA
ATGTAACGACGGAGGGATCCATATGTAAACATAGTATCTATTTAGATACGCTCGAATGACCCCTT
CTTATTCTTATTTCTTATTCTTATAATGAGAATGTATATAAGCCTATTCCGGTCTGGTCCGGTAT
GGAATGAACTTATAATCATGGAATCGACTCGATTATCAGATTATAGATTATAAGTTCATAACCCT
AGCCCATTCCCATTTTGGGCGGAACAGATCTACTAATTCTTTGATTCCAGTTAGTAAGAGGGATC
TTGAACTAAGAAATAGATTCTAGAAGCTAAAAAAGGGTATCTTGAGCAATTTCAATAATCGGGTT
CATTGATATTCCTGGTATAGTAGATGCTATCACACATACAATCAT
Found at i:62514 original size:13 final size:13
Alignment explanation
Indices: 62496--62521 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
62486 GAATGACCCC
62496 TTCTTATTCTTAT
1 TTCTTATTCTTAT
62509 TTCTTATTCTTAT
1 TTCTTATTCTTAT
62522 AATGAGAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.69
Consensus pattern (13 bp):
TTCTTATTCTTAT
Left flanking sequence: Indices 61996 -- 62495
CACGAGATTTTGAGTCTCGCGTGTCTACCATTTCACCACCAAGGCATCTTGAAAGTGAATCGTAT
TCCATGAATATGATATCTATCTAGTGTGATGTATGGAATATATGACAAAGGCGGAGTCTTGGAGT
ATTTCTATTGATCGGTCATGTCATATAGGCCCGAGTCGGACATCCAATTGCTTCGATTTGAATTA
TCCGGAAGATGCCTTATCTTATATATCTTATATATMTWWTATATATAWTATAAATATTATATATC
TTATATATCAAAATATATCAAAATAAAAATTATATCAAAATATAAAAAAATGGACAATCAAACCC
ATTTCTCGATTCAATAGAAGCCCAAAGAGGTGAATAGAATAGGGTCCCAAATAAGGAGAGATATA
TATGTAAAAAGCAGGTCCGATTACGCCTATTCCTAATCCTAAATGGAATGTAACGACGGAGGGAT
CCATATGTAAACATAGTATCTATTTAGATACGCTCGAATGACCCC
Right flanking sequence: Indices 62522 -- 63021
AATGAGAATGTATATAAGCCTATTCCGGTCTGGTCCGGTATGGAATGAACTTATAATCATGGAAT
CGACTCGATTATCAGATTATAGATTATAAGTTCATAACCCTAGCCCATTCCCATTTTGGGCGGAA
CAGATCTACTAATTCTTTGATTCCAGTTAGTAAGAGGGATCTTGAACTAAGAAATAGATTCTAGA
AGCTAAAAAAGGGTATCTTGAGCAATTTCAATAATCGGGTTCATTGATATTCCTGGTATAGTAGA
TGCTATCACACATACAATCATACTCAATTCGATGGAATTGTTTGATCTTAAAGGGGATCTTCTAT
AATTTCGCACGTGAGGGGTTATTTCTTGGTTTCGTCCAGTCATTAATAACTTGATTATTTTTAGA
TAATAGTAGATAGAAACAACGCTCGTAAGGAGTCCTATTGAAACCAAAAAATAGAGGCCTGCCTG
CCATCCACACCAGAATAAATGGAGTTTTCCGAAAAAACCTGCTAG
Found at i:67004 original size:14 final size:14
Alignment explanation
Indices: 66968--67094 Score: 73
Period size: 15 Copynumber: 8.4 Consensus size: 14
66958 CTTCTACTTC
66968 ATTTTTATTTATTT
1 ATTTTTATTTATTT
66982 ATTTAATT-TTTATTT
1 ATTT--TTATTTATTT
66997 A--TTTATTT-TTT
1 ATTTTTATTTATTT
*
67008 ATTATTATTATATTT
1 ATTTTTATT-TATTT
*
67023 ATTATTATTATAATTAT
1 ATTTTTATT-T-ATT-T
*
67040 ATTATTATAATTATATT
1 ATT-TT-TATTTAT-TT
*
67057 ATTATTATATTATTT
1 ATTTTTAT-TTATTT
67072 ATATTATTATTTATATT
1 AT-TT-TTATTTAT-TT
67089 ATTTTT
1 ATTTTT
67095 CCCTCTCTTT
Statistics
Matches: 91, Mismatches: 6, Indels: 31
0.71 0.05 0.24
Matches are distributed among these distances:
11 6 0.07
12 3 0.03
13 6 0.07
14 5 0.05
15 30 0.33
16 17 0.19
17 18 0.20
18 3 0.03
19 3 0.03
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (14 bp):
ATTTTTATTTATTT
Left flanking sequence: Indices 66468 -- 66967
AAATTATGGCCAATACCAGGTATATAAGCAGTGATTTCAAATCCAGAGGTTAATCGTACTCTGGC
AACTTTACGTAAGGCAGAGTTTGGTTTTTTGGGGGTGATAGTGGAAAAGTTGACAGATAAGTCAC
CCTTACTGCCACTCTACAGAACCATACATGAGATTTTCACCTCATACGGCTCCTCGTTCAATTCT
TTCGAAGTCATTGGATCCTTTTCCTCGTTCGAGAAGCTCCTCCCTTCCTCCACCCCGTCCCGAAG
AGTAACTAGGACAAATTCAGTCACGTTTTCATGTTCCAATTGAACACTTTCCTTTTTTGATTATT
CTCAAAGGAGAAGATTCTTCTTTTTACCAAACATCTGCGGATCCAATCACGATCTTATAATAAGA
ACAAGAAATCTTTCTCGATCAATCCCTTTGCCCCTCATTCTTCGAGAATCAGAAATATTTTTTTT
TTCAAGTTTGAATTTGTTCATTTGGAATCTGGGCTCTTCTACTTC
Right flanking sequence: Indices 67095 -- 67594
CCCTCTCTTTTCTTTTTTTATTCCCTTCCGTCATTCCTTAAGTCCCATAGGTTTGATCCTGTAGA
ATCTAACCCATTTTATCATTAAGCGAAGGGATTTTATCATTAAGCGAAGGGTACAAAATAAATCA
GATTGATTTTTCGATCAAAAGTACTATGTGAAATCTTCGGTTTTTTCCTCTTTCGCTATCCCTAT
CCCATAGGTACAGCGTTTGAATCAATAGAGAACCTTTTCTTCTATATCTGTATGAATCGAGATTA
TTACATTCCAATTCCTTCTCGACACCTCCCAAGGAAAACCCCGAATTGGATCCCAAATTGACGGG
TTAGTGTGAGCTTATCCATGCGGTTATGCACTCTTCGAATAGGAATCCATTTTCTGAAAGATCCT
GGCTTTCGTGCTTTGGTGGGTCTCCGAGATCCTTTCGATGACCTATGTTGTGTTGAAGGGATATC
TATATGATCCGATCGATTGCGTAAAGCACGCGGTAGCAACGGAAC
Found at i:67014 original size:3 final size:3
Alignment explanation
Indices: 67006--67091 Score: 85
Period size: 3 Copynumber: 29.7 Consensus size: 3
66996 TATTTATTTT
* *
67006 TTA TTA TTA TTA -TA TTTA TTA TTA TTA TAA TTA -TA TTA TTA TAA
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
67050 TTA -TA TTA TTA TTA -TA TTA TT- TATA TTA TTA TT- TATA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA T-TA TTA TT
67092 TTTCCCTCTC
Statistics
Matches: 70, Mismatches: 4, Indels: 18
0.76 0.04 0.20
Matches are distributed among these distances:
2 10 0.14
3 56 0.80
4 4 0.06
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Left flanking sequence: Indices 66506 -- 67005
AAATCCAGAGGTTAATCGTACTCTGGCAACTTTACGTAAGGCAGAGTTTGGTTTTTTGGGGGTGA
TAGTGGAAAAGTTGACAGATAAGTCACCCTTACTGCCACTCTACAGAACCATACATGAGATTTTC
ACCTCATACGGCTCCTCGTTCAATTCTTTCGAAGTCATTGGATCCTTTTCCTCGTTCGAGAAGCT
CCTCCCTTCCTCCACCCCGTCCCGAAGAGTAACTAGGACAAATTCAGTCACGTTTTCATGTTCCA
ATTGAACACTTTCCTTTTTTGATTATTCTCAAAGGAGAAGATTCTTCTTTTTACCAAACATCTGC
GGATCCAATCACGATCTTATAATAAGAACAAGAAATCTTTCTCGATCAATCCCTTTGCCCCTCAT
TCTTCGAGAATCAGAAATATTTTTTTTTTCAAGTTTGAATTTGTTCATTTGGAATCTGGGCTCTT
CTACTTCATTTTTATTTATTTATTTAATTTTTATTTATTTATTTT
Right flanking sequence: Indices 67092 -- 67591
TTTCCCTCTCTTTTCTTTTTTTATTCCCTTCCGTCATTCCTTAAGTCCCATAGGTTTGATCCTGT
AGAATCTAACCCATTTTATCATTAAGCGAAGGGATTTTATCATTAAGCGAAGGGTACAAAATAAA
TCAGATTGATTTTTCGATCAAAAGTACTATGTGAAATCTTCGGTTTTTTCCTCTTTCGCTATCCC
TATCCCATAGGTACAGCGTTTGAATCAATAGAGAACCTTTTCTTCTATATCTGTATGAATCGAGA
TTATTACATTCCAATTCCTTCTCGACACCTCCCAAGGAAAACCCCGAATTGGATCCCAAATTGAC
GGGTTAGTGTGAGCTTATCCATGCGGTTATGCACTCTTCGAATAGGAATCCATTTTCTGAAAGAT
CCTGGCTTTCGTGCTTTGGTGGGTCTCCGAGATCCTTTCGATGACCTATGTTGTGTTGAAGGGAT
ATCTATATGATCCGATCGATTGCGTAAAGCACGCGGTAGCAACGG
Found at i:67195 original size:21 final size:21
Alignment explanation
Indices: 67169--67210 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
67159 AATCTAACCC
67169 ATTTTATCATTAAGCGAAGGG
1 ATTTTATCATTAAGCGAAGGG
67190 ATTTTATCATTAAGCGAAGGG
1 ATTTTATCATTAAGCGAAGGG
67211 TACAAAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.10, G:0.24, T:0.33
Consensus pattern (21 bp):
ATTTTATCATTAAGCGAAGGG
Left flanking sequence: Indices 66669 -- 67168
GTCATTGGATCCTTTTCCTCGTTCGAGAAGCTCCTCCCTTCCTCCACCCCGTCCCGAAGAGTAAC
TAGGACAAATTCAGTCACGTTTTCATGTTCCAATTGAACACTTTCCTTTTTTGATTATTCTCAAA
GGAGAAGATTCTTCTTTTTACCAAACATCTGCGGATCCAATCACGATCTTATAATAAGAACAAGA
AATCTTTCTCGATCAATCCCTTTGCCCCTCATTCTTCGAGAATCAGAAATATTTTTTTTTTCAAG
TTTGAATTTGTTCATTTGGAATCTGGGCTCTTCTACTTCATTTTTATTTATTTATTTAATTTTTA
TTTATTTATTTTTTATTATTATTATATTTATTATTATTATAATTATATTATTATAATTATATTAT
TATTATATTATTTATATTATTATTTATATTATTTTTCCCTCTCTTTTCTTTTTTTATTCCCTTCC
GTCATTCCTTAAGTCCCATAGGTTTGATCCTGTAGAATCTAACCC
Right flanking sequence: Indices 67211 -- 67710
TACAAAATAAATCAGATTGATTTTTCGATCAAAAGTACTATGTGAAATCTTCGGTTTTTTCCTCT
TTCGCTATCCCTATCCCATAGGTACAGCGTTTGAATCAATAGAGAACCTTTTCTTCTATATCTGT
ATGAATCGAGATTATTACATTCCAATTCCTTCTCGACACCTCCCAAGGAAAACCCCGAATTGGAT
CCCAAATTGACGGGTTAGTGTGAGCTTATCCATGCGGTTATGCACTCTTCGAATAGGAATCCATT
TTCTGAAAGATCCTGGCTTTCGTGCTTTGGTGGGTCTCCGAGATCCTTTCGATGACCTATGTTGT
GTTGAAGGGATATCTATATGATCCGATCGATTGCGTAAAGCACGCGGTAGCAACGGAACCGGGGA
AAGTATACAGAAAAGACAGTTCTTTTCTATTCTATTAGTTTAGTATTTTCTATTCTATTATTATT
AGATTAGTATTAGTTAGTGATCCCGGCTCAGTGAGTCCTTTCTTC
Found at i:67673 original size:29 final size:28
Alignment explanation
Indices: 67620--67676 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 28
67610 GAAAAGACAG
* *
67620 TTCTTTTCTATTCTATTAGTTTAGTATT
1 TTCTATTCTATTCTATTAGATTAGTATT
*
67648 TTCTATTCTATTATTATTAGATTAGTATT
1 TTCTATTCTATT-CTATTAGATTAGTATT
67677 AGTTAGTGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
28 11 0.44
29 14 0.56
ACGTcount: A:0.23, C:0.09, G:0.07, T:0.61
Consensus pattern (28 bp):
TTCTATTCTATTCTATTAGATTAGTATT
Left flanking sequence: Indices 67120 -- 67619
TTCCGTCATTCCTTAAGTCCCATAGGTTTGATCCTGTAGAATCTAACCCATTTTATCATTAAGCG
AAGGGATTTTATCATTAAGCGAAGGGTACAAAATAAATCAGATTGATTTTTCGATCAAAAGTACT
ATGTGAAATCTTCGGTTTTTTCCTCTTTCGCTATCCCTATCCCATAGGTACAGCGTTTGAATCAA
TAGAGAACCTTTTCTTCTATATCTGTATGAATCGAGATTATTACATTCCAATTCCTTCTCGACAC
CTCCCAAGGAAAACCCCGAATTGGATCCCAAATTGACGGGTTAGTGTGAGCTTATCCATGCGGTT
ATGCACTCTTCGAATAGGAATCCATTTTCTGAAAGATCCTGGCTTTCGTGCTTTGGTGGGTCTCC
GAGATCCTTTCGATGACCTATGTTGTGTTGAAGGGATATCTATATGATCCGATCGATTGCGTAAA
GCACGCGGTAGCAACGGAACCGGGGAAAGTATACAGAAAAGACAG
Right flanking sequence: Indices 67677 -- 68176
AGTTAGTGATCCCGGCTCAGTGAGTCCTTTCTTCCGTGATGAACTGTTGGCACCAGTCCTACATT
TTGTCTCTGTGGACCGAGGAGAAAGGGGCTCAGCGAGAAGAGGATTGTACCATGAGAGAAGCAAG
GAGGTCAACCTCTTTCAAATATACAACATGGATTCTGGCAATGCAATGCAATGTAGTTGGACTCT
CATGTCGATCCGAATGAATCATCCTTTCCACGGAGGTAAATCTTTGCCTGCTAGGCAAGAGGATA
GCAAGTTACAAATTCTGTCTCGGTAGGATAGACATGTATTTTATTTCTATTACTATGAAATTCAT
ATTACTATGAAATTCATAAATGAAGTAGTTAATAAATGAAATAGTTAATGGTGGGGTTACCATTA
TCCTTTTTGTAGTGACGAATCTTGGATGTGTTCCTAAGAAAAGGAATTTGTCCATTTTTCGGGGT
CTCAAAGGGGCGTGGAAACGCATAAGAACTCTTGAATGGAAATGG
Found at i:68006 original size:17 final size:17
Alignment explanation
Indices: 67984--68019 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
67974 ATTTTATTTC
67984 TATTACTATGAAATTCA
1 TATTACTATGAAATTCA
68001 TATTACTATGAAATTCA
1 TATTACTATGAAATTCA
68018 TA
1 TA
68020 AATGAAGTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.42, C:0.11, G:0.06, T:0.42
Consensus pattern (17 bp):
TATTACTATGAAATTCA
Left flanking sequence: Indices 67484 -- 67983
TGGCTTTCGTGCTTTGGTGGGTCTCCGAGATCCTTTCGATGACCTATGTTGTGTTGAAGGGATAT
CTATATGATCCGATCGATTGCGTAAAGCACGCGGTAGCAACGGAACCGGGGAAAGTATACAGAAA
AGACAGTTCTTTTCTATTCTATTAGTTTAGTATTTTCTATTCTATTATTATTAGATTAGTATTAG
TTAGTGATCCCGGCTCAGTGAGTCCTTTCTTCCGTGATGAACTGTTGGCACCAGTCCTACATTTT
GTCTCTGTGGACCGAGGAGAAAGGGGCTCAGCGAGAAGAGGATTGTACCATGAGAGAAGCAAGGA
GGTCAACCTCTTTCAAATATACAACATGGATTCTGGCAATGCAATGCAATGTAGTTGGACTCTCA
TGTCGATCCGAATGAATCATCCTTTCCACGGAGGTAAATCTTTGCCTGCTAGGCAAGAGGATAGC
AAGTTACAAATTCTGTCTCGGTAGGATAGACATGTATTTTATTTC
Right flanking sequence: Indices 68020 -- 68519
AATGAAGTAGTTAATAAATGAAATAGTTAATGGTGGGGTTACCATTATCCTTTTTGTAGTGACGA
ATCTTGGATGTGTTCCTAAGAAAAGGAATTTGTCCATTTTTCGGGGTCTCAAAGGGGCGTGGAAA
CGCATAAGAACTCTTGAATGGAAATGGAAAAGAGATGTAACTCCAGTTCCGAAGGAACTGGTAAG
ATCTTTGGCGCAAGAAGAAAGGGTTGATCCGTATCATCTTGACTTGGTTCTGATTTCTCTATTTA
TTTAAGAATACCGAGCCGGGGTCTTCTCCTACCCGTATCAAATAGAACATGTTGAGCCAAATCTT
CTTCATGTAAAACCTGCTTTATTTAGATCGGGAAAATCATACGCTTTTATGAAACCATGTGCTAT
GGCTCGAATCCGTAGTCAATCCTATTTCCGATAGGAGCAGTTGACAATTGAATCCAATTTTTCCC
ATTATTTTCGTATCCGTAATAGTGCGAAAAGAGGGCCCGACTCCA
Found at i:68038 original size:16 final size:16
Alignment explanation
Indices: 68017--68050 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
68007 TATGAAATTC
*
68017 ATAAATGAAGTAGTTA
1 ATAAATGAAATAGTTA
68033 ATAAATGAAATAGTTA
1 ATAAATGAAATAGTTA
68049 AT
1 AT
68051 GGTGGGGTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.15, T:0.32
Consensus pattern (16 bp):
ATAAATGAAATAGTTA
Left flanking sequence: Indices 67517 -- 68016
TTTCGATGACCTATGTTGTGTTGAAGGGATATCTATATGATCCGATCGATTGCGTAAAGCACGCG
GTAGCAACGGAACCGGGGAAAGTATACAGAAAAGACAGTTCTTTTCTATTCTATTAGTTTAGTAT
TTTCTATTCTATTATTATTAGATTAGTATTAGTTAGTGATCCCGGCTCAGTGAGTCCTTTCTTCC
GTGATGAACTGTTGGCACCAGTCCTACATTTTGTCTCTGTGGACCGAGGAGAAAGGGGCTCAGCG
AGAAGAGGATTGTACCATGAGAGAAGCAAGGAGGTCAACCTCTTTCAAATATACAACATGGATTC
TGGCAATGCAATGCAATGTAGTTGGACTCTCATGTCGATCCGAATGAATCATCCTTTCCACGGAG
GTAAATCTTTGCCTGCTAGGCAAGAGGATAGCAAGTTACAAATTCTGTCTCGGTAGGATAGACAT
GTATTTTATTTCTATTACTATGAAATTCATATTACTATGAAATTC
Right flanking sequence: Indices 68051 -- 68550
GGTGGGGTTACCATTATCCTTTTTGTAGTGACGAATCTTGGATGTGTTCCTAAGAAAAGGAATTT
GTCCATTTTTCGGGGTCTCAAAGGGGCGTGGAAACGCATAAGAACTCTTGAATGGAAATGGAAAA
GAGATGTAACTCCAGTTCCGAAGGAACTGGTAAGATCTTTGGCGCAAGAAGAAAGGGTTGATCCG
TATCATCTTGACTTGGTTCTGATTTCTCTATTTATTTAAGAATACCGAGCCGGGGTCTTCTCCTA
CCCGTATCAAATAGAACATGTTGAGCCAAATCTTCTTCATGTAAAACCTGCTTTATTTAGATCGG
GAAAATCATACGCTTTTATGAAACCATGTGCTATGGCTCGAATCCGTAGTCAATCCTATTTCCGA
TAGGAGCAGTTGACAATTGAATCCAATTTTTCCCATTATTTTCGTATCCGTAATAGTGCGAAAAG
AGGGCCCGACTCCAAGTTGTTCAAGAATAGTGGCGTTGAGTTTCT
Found at i:79721 original size:22 final size:22
Alignment explanation
Indices: 79696--79739 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
79686 TTAGGCCTTT
79696 CTAAAAGATAGAAAATTATTAA
1 CTAAAAGATAGAAAATTATTAA
79718 CTAAAAGATAGAAAATTATTAA
1 CTAAAAGATAGAAAATTATTAA
79740 ATTATTAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.59, C:0.05, G:0.09, T:0.27
Consensus pattern (22 bp):
CTAAAAGATAGAAAATTATTAA
Left flanking sequence: Indices 79196 -- 79695
AAAGGAAAAGGGAAGTCACTAGAAAGAATGTCATATAGGATTTCGCGAGGAAATAACCTATCAAA
CAATTTATGAATATATATATAATAAAATTAGGAGGCCTCTTTCACTTTCCGAAAAAAATTTTTAA
AATAGAAGAACGGCGGCGGCGAATAGGAAGTTTATGTGAATAATTATTTCTTTTAGACCGTAGTC
TAAATAGAGAAGATTCAAAAAAGATATAAAAAATAAAGGTATCAAATAGAGGACTGGTTCTATTC
TTGATCCTTTATTTGGAATATCTTTTTTAAGAAAAAAAATGAATAATCGAATAAATATCAACTCG
GTCACCAGACCGAAGCCCCATTCACCCATTTTCTGATTAAAGAAGATTCGGGAAAGTAGCACCGC
AAAAAAAATAAAATGTAAGAACACATAAGAATCCAAAAACAAATAAAGATGACAAGCTGTTAATA
GGATGAGAATAAGTCCTACAAGGAAGCAGCATGGATTAGGCCTTT
Right flanking sequence: Indices 79740 -- 80239
ATTATTAAAGAAAAAAATAAAAAGAGATAGGGCTCTTTCCTCATAATTATGAGCGAAAAAAATAA
AAAAGATGGCCGAAGACCCCCCAAAAATTATGAGAGGCGAGGCCACTTCACCCGAAAACCATATA
AGGGTAAAAATTCCTGCAACCATATTGCTAGAGCATATCAGAAATAGTGTGTAGAAAAACATCTT
TTTCATTAGAAGCTTTTTTTTCCTCCTCTTCCTGTTCTATTGATCAAAAGCATCCAGCAGCGCCA
CGCCAGTAGAAAGAGTTAAGCTACTAAGCTAAGCTGCTGTTGGGGAACTCGGTAGAAGCGATTTG
CCGCTTCCCCCTCTCTTTCTTTTCTTTCACTATTCCCACCTAGGTCCCCGGCTTTGGTTGCTTGG
CCGGGATAGAACCAGCGCTTAGTAAGTAAGCGGCGGTCTAACTTCTTTAAACCTACACACTCCTG
AAAACAAAGATTGATGTCCTTTCTTAGCTTATAAAGTCTTCTTCA
Found at i:89414 original size:3 final size:3
Alignment explanation
Indices: 89408--89463 Score: 69
Period size: 3 Copynumber: 18.7 Consensus size: 3
89398 TATATAATTC
* * *
89408 ATA ATA ATA ATA ATA A-A AAA ATA ATA ATA ATA ACAA ATA AAA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA
89453 ATA ATA ATA AT
1 ATA ATA ATA AT
89464 TAGTCTGTCT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
2 2 0.04
3 42 0.91
4 2 0.04
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (3 bp):
ATA
Left flanking sequence: Indices 88908 -- 89407
TCTAGCGACCCCACTCGAAGAGTCACGTATCCAGAGTTGACCACATCCTCACTACTTTGGCCACC
TAAGCAACCAAGTAGAAAAAAGGGGGTTTAGAGTCGCCACCTAGGCATAGGGGCTTAAGACCCAA
TAATTTGATTCCGAGTCCTTAACTACTGGAATGGGCAGACCGCAAGTTAATAGCAAGAGATCGTT
TCCACTTTCCAGATGCAAGAGTTGCGACCGATTAAAGCGAGAAATTCGAGAGAGAGGCTATAGAG
GCTTACTAGTAAAGGGACCGTCTGAAATGCCTAATAAGAAAGTCTCGGCTTAGCTGCATTCTCTG
AATCCAACCGGTAAAGCAAGAAAAAAAGTAAGAAAGGAAGTCAAGCAGTAAAGGTATAGCAAAGC
AAAAAAGGAATCAGGAAAGGCATACTAATACCACTAATTCAGTCTAATTGGCCTTAGGCTAGAAA
AAAGCCAGGGGCGAAGAAAAAAATAAAGAATAATATATATAATTC
Right flanking sequence: Indices 89464 -- 89963
TAGTCTGTCTATAAGAGAAGAGGAAATCCTATGAAAAATGTAACCGATTCTTTCGTTTCTTGGGG
TCATTGGCCGTCTGCTGGGAGTTTCGGGCTTAATACCGATATTTTAGCAACAAATCCAATAAATC
TAAGTGTAGTACTTGGTGTATTGATTTTTTTTGGAAAGGGAGTGTGTGCGAGTTGTTTATTTCAA
GAATAGGCTGGATTGAACCAGTTGTACTTTTTTTCGTTTTAACTAGCAACTAGTAAAGAAAAAAA
GGTGCATGATCCCGCGAATTACTTCTGAATAAATAAAAAAATCATCTTTAAGAATCATAGCATTT
CGTGATTTATTGGTAAATTGGATTCTCTATCAACCAATAAGGTAGGAACATTAACATGGTTAAAG
CTCAAGCTAAACTGTTTGAAGTCCAGGCGCAGCAAGGTACTCTTTCTACTACTATGTTAATACAT
AAATAAAGTGAATACATAAATAAATGGGTTTAAAATGAATAGTTG
Found at i:113722 original size:15 final size:15
Alignment explanation
Indices: 113702--113731 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
113692 AGATCCGCTG
*
113702 CTAGTCTTTGCTTCA
1 CTAGTCCTTGCTTCA
113717 CTAGTCCTTGCTTCA
1 CTAGTCCTTGCTTCA
113732 GTTGGTCTAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.13, C:0.30, G:0.13, T:0.43
Consensus pattern (15 bp):
CTAGTCCTTGCTTCA
Left flanking sequence: Indices 113202 -- 113701
TCATATTATACTCTTCAACTCGGCTTCAAGCCTCTCTTTCAAGTACCAAGTACGGAGTCAGAGGG
GCACTGGGAACTCTCACAGTTTGCTTTTTTATCTTCCTTGACCAGATCAAAATGAATCAGTCTTC
GCTTTAGCTATGGGAAATTCTCTTAAGCAATTCAGTCAGCTCTGAACTCAATGATTGCAAGTCCA
AGATCAGCTGTTCAATGAAACTCTGCCTTTAATTTAAAGAAGGGCATGAAGCTGTGGGATCGAAC
TCTGGCTTTTCGGGCAGCTAACTCCCCGGTTTGGAATTCCTAGCCTGATGCTTTCTAGTGGCATA
GAAAATCTGTCTTAGACCCCGAATCTACTGCCTTAGGAAAGGAAGGAGTCAACAGTAAGATCAAT
GTCGGAGAATCCGCTCTTGCCTTAGCTTAGGATGAGTTCATAGGCACAGTACAGGTTACGTAGTC
AGGTCAGAGTGAACAAGATCTGATGTTCCAGATCCAGATCCGCTG
Right flanking sequence: Indices 113732 -- 114231
GTTGGTCTACCTACTGTTTGCAAGATCCAAGGTCGGGCATGAAGCTTTGGCTCAGTAGGCTTTGG
CATTCGACTTTGGGAAATAGAATAGATCGCTTACCTTGCTTTGGCATGCTAGAAAGGAAGCATTT
CGCTGTGGTTCAAGATCATTGATTGAGTAGATCCCGAGACAAAGGGAGTTGAAGTGATCCGAGGG
GGAATAGAAAAAGGGAGTTCCAGGGCTAAATCCGCTCACTTCACGGGAAAAGCAATAGCGGAGGG
TAGTAGCCTAGGAATACGACAACACAGACTTTAAATATCGAAAGAGTTCACAGGTAAGGTTTCTG
ACCAGTGGGTCGGTTAGTTAGTTTTTCTTCTAACTTAGATTAGGCTCGCCTTTCACTAAGGCAAG
GGACCCTTTTTCCCCACTTTCACAACCCTATTTTCGTAGTTTTAAGGGTTATTTGGCGAAAGACA
AAACTCGTCCTTAGTAGCCAAGCCAAGAAGAATGGCTCGAAAGCA
Found at i:118891 original size:18 final size:19
Alignment explanation
Indices: 118851--118893 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
118841 ACCGCCCTGC
118851 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAGTCTGTTT
118870 -ATAGTCGCGA-T-TGTTGT
1 CATAGTCGCGAGTCTGTT-T
118887 CATAGTC
1 CATAGTC
118894 AACAAGGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 4 0.18
17 2 0.09
18 16 0.73
ACGTcount: A:0.19, C:0.19, G:0.26, T:0.37
Consensus pattern (19 bp):
CATAGTCGCGAGTCTGTTT
Left flanking sequence: Indices 118351 -- 118850
GTGCCGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTACAGAACCATGCCTGTCTGTT
GGAGCGAATTGGATGATCGGGCCGAGGACTGCCCCCTCTTCCCCTCACTCTCCTTTCCCTAACGC
TGCGCCCCTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGCCCTAAAGCCCTACGCGACTGGCG
CTTCAAAAGGCTCAACTCTCGTCGTAGTTTGGCGACCTAAGGGGCGGACACTTTTAAAGTCAAGT
AAAGGCGAAGACTCTTCAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGGTTCCGGCTC
TGCGCACCTGCTGACACCTTTCGAAGCACTTTTCTAGTGTGCGCTTTAGTTTTAGAATGTGTCAC
GAGTCTACAAGCCTTTCTCATTTCAGTGCTCGCCTTTTGAATCTTCAGTAGGGGCCTTTAGTCTT
TTGATTAGAGTAGGGGTCGCGAGAGAGCAGAGCGTACCGCCCTGC
Right flanking sequence: Indices 118894 -- 119393
AACAAGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACC
GTACCCTAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAA
GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAA
AGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACAC
GATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAGAAGTGTTAGTTGCTTTGA
ATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGC
ATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAA
ATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTA
Found at i:147456 original size:12 final size:12
Alignment explanation
Indices: 147439--147464 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
147429 TCACCATTCC
147439 AAATAAATAATA
1 AAATAAATAATA
147451 AAATAAATAATA
1 AAATAAATAATA
147463 AA
1 AA
147465 CATGAGATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (12 bp):
AAATAAATAATA
Left flanking sequence: Indices 146939 -- 147438
ACAAACATATGTATTTTATAAATTATCACAAATCCAAGTTATTAATTTATATAAGTTAAGATCTG
CTCTTCAATATCACAGAGCAGATCTTTTTGTTAAAAATGAAATAAAAAAAGATTTTGGAGCCCAA
GGACTATTTCATTCCGACTTAAAAGATAACAACTTTAGAAATTCTGTAATGAATCAATGGAAAAG
CTGGTTCAAGAATTATTATCAATATAAATGCAATTTATCTCAGATTAACTGGTCTAGATTAATAC
CACAAAAATGGCGAAATAGAATTAATCAACGTTGTATGGTTCAAAATAAAGATTTAAACAAATGG
AATTTATATGAAAAAGACCACCTAATTTATTACGAAAAAGAAAATGATTTACAAGGGAATTCATT
ACCAAGCCAAAAAAAGAATTTGAAAAAAAATTATCGATATAATCTTTTATTATATAAATCTATTA
ATTATGAAAATAAGAAAGACTCATATATTTATGCATCACCATTCC
Right flanking sequence: Indices 147465 -- 147964
CATGAGATTTCTTATAATTATAACACACCCAAAAGCAAGTTTTTGGATATGTTCGGAGATATACC
TATTAATAATTATCTAGCAGAAGAGGATATTATCAATATGGAGAAACCCCCCGATAGAAAAAATT
TTGATTGGAAAATTATCAAGTTTTGTATTAGAAAAAAAGTGGATATTGAGTCCTGGATCGATACC
GGAACCAAACAAAAAAACAATATTAAGACTGGAACTCATAAGTATCAGATAATTGATAAAATTGA
TAACAAAGATATTTTTTCTCTTACGATTCAACAAGATCACGAAGTTAATTCAGCCAATAAAAAAA
AAAACTTTTTTGATTGGATGGAAATGAATGAAGCAATACTAAATCAACCCATATCAAATTTGGAA
CTTTGGTTCTTTCCAAAATTTGTGATATTTTGCAACACATATAAGATACAACCGTGGGTAATACC
AATTAAATTACTTCTTGTAAATTTTAATGACAATGAAAAAATAAA
Found at i:147994 original size:19 final size:18
Alignment explanation
Indices: 147945--147979 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
147935 TGTAAATTTT
* *
147945 AATGACAATGAAAAAATA
1 AATGAAAATAAAAAAATA
147963 AATGAAAATAAAAAAAT
1 AATGAAAATAAAAAAAT
147980 CAATAGAAAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.71, C:0.03, G:0.09, T:0.17
Consensus pattern (18 bp):
AATGAAAATAAAAAAATA
Left flanking sequence: Indices 147445 -- 147944
ATAATAAAATAAATAATAAACATGAGATTTCTTATAATTATAACACACCCAAAAGCAAGTTTTTG
GATATGTTCGGAGATATACCTATTAATAATTATCTAGCAGAAGAGGATATTATCAATATGGAGAA
ACCCCCCGATAGAAAAAATTTTGATTGGAAAATTATCAAGTTTTGTATTAGAAAAAAAGTGGATA
TTGAGTCCTGGATCGATACCGGAACCAAACAAAAAAACAATATTAAGACTGGAACTCATAAGTAT
CAGATAATTGATAAAATTGATAACAAAGATATTTTTTCTCTTACGATTCAACAAGATCACGAAGT
TAATTCAGCCAATAAAAAAAAAAACTTTTTTGATTGGATGGAAATGAATGAAGCAATACTAAATC
AACCCATATCAAATTTGGAACTTTGGTTCTTTCCAAAATTTGTGATATTTTGCAACACATATAAG
ATACAACCGTGGGTAATACCAATTAAATTACTTCTTGTAAATTTT
Right flanking sequence: Indices 147980 -- 148479
CAATAGAAAGAAAAATGGTGATTTTTTTATATCTATATTCTCGAATAAAAAAAAATCTATTGAAT
TAGATAATCGAAACTACGAAGAAAAAGAATTAGAGGACCCAATGGATCTTGAATCAGTTCTGTCA
AATCAAGAAAAAGATATTGAAGAAGATTATGCGGAATCAAACCTGAAAAAACGTAGAAAGCAAAA
ACAATACAAAAGTAATACGGAAATAGAACTTTATTTTTTCCTAAAAAAACATTTAGGTTTTCAAT
TAAGATGGGATGCTTTCTTAGATCAAAAAATAATTAATAATATCAAACTATTTTGTCTCCTACTT
AGACTAACGAATCCACGAGAAATTATTATATCTTCTGTTCAAAGAGGTGAAATGAGTCTGGATAT
TCTGATGATTCAAAAAGATTTCACTCTTACAGAATTGATGAAAAAGGGAATATTGATTATTGAAC
CAATGGGTCTATCGGTAAAAATAAAAAATAACGGACACTTTATTA
Found at i:152086 original size:15 final size:15
Alignment explanation
Indices: 152066--152102 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
152056 CATAATAATA
152066 TAATAATATAAAAAG
1 TAATAATATAAAAAG
152081 TAATAATATAAAAAG
1 TAATAATATAAAAAG
152096 -AATAATA
1 TAATAATA
152103 ATTGGAGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 7 0.32
15 15 0.68
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (15 bp):
TAATAATATAAAAAG
Left flanking sequence: Indices 151566 -- 152065
CTCTACGTGCGATTCGTTAAAACATAAGTTTTTCCCTATTCTTTTTGTTTTTCTTTTTCTATTTT
TCTTTTTCGAAAGAAAAAATAAAATGAAATAAATTGAATAGGATATCTTCATTTTTTTATTTATC
ATTTAGGTTGATGAAGTAAATTGGATAGTTATATGAGTGAAAGAAAACAGCTTCTAAATTTTGCA
GTAAAAAAAATTGAGACTCATTTCTTATGTACAAAAGTAAAACAAAAAGAGACATAAGAATACGA
GACCGAGACCGGTTACCCCAAGATTGATTGATTAATCGTCCGAGCTTGAAGCGGGTTCAAAAGAT
CAACCTTATTGAGTTTTTACTATCATTTATATGTATTCCCATTATCATAAGGTTACTATAATGGG
CAGTTGAGAAAGAATAGAATGGGTGGATGGTTAGGAACACCAAGATACACAAAGGATTAGTAACA
GGAGATTCTTGAAATTATTCAAAAGGATATTTCTTCATAATAATA
Right flanking sequence: Indices 152103 -- 152602
ATTGGAGTTTGAAATTGGTAGAAATGATCAGACAGTACTCTCCATGATTCCGATCCAAAGTATGC
TTCCAGCCCCCTATTAAAACAAAAAAATAATTATCAGGAACGAAGGAACCCTTTACTTTTTTTTT
TCTTTTTTTCTATATCCATATTCATAGAGAGCGAGTTCATATCAGAATTCATGAACCAAAGTACT
GCCTAATTCTTTTTAATAATCGAAAACGATAGATTAAAATATTTATTGGTATGGCTACAAGGAGT
ATTTTATTGAAGGATTTAAGTTATTACTCAAAAAAGAAAAATTGAAATTATTAATTAAAGGATGA
GATTAATTCAGAAGTGCTTTTTTTAGAATATTATAACAGACAGAATTCCATTGGTTGAATTTGGG
AACGTCCGATAAACTTTGATCTTATCTATGATACAAATATATCAAGATAAATAATAAAATCCGGT
CCTTAGATTTTTTATGACCTGCGAGGAGCCGTATGAGGTAAAAAT
Found at i:154056 original size:40 final size:40
Alignment explanation
Indices: 154001--154080 Score: 160
Period size: 40 Copynumber: 2.0 Consensus size: 40
153991 GCATCACAGC
154001 TTAATTTGGATTGAAAATCTATTAATATTAATATATCCCT
1 TTAATTTGGATTGAAAATCTATTAATATTAATATATCCCT
154041 TTAATTTGGATTGAAAATCTATTAATATTAATATATCCCT
1 TTAATTTGGATTGAAAATCTATTAATATTAATATATCCCT
154081 AATTCTATTC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.38, C:0.10, G:0.07, T:0.45
Consensus pattern (40 bp):
TTAATTTGGATTGAAAATCTATTAATATTAATATATCCCT
Left flanking sequence: Indices 153501 -- 154000
AATGCATTGCTTGTGAAGTATGTGTTCGTGTATGTCCTATAGATCTACCTGTTGTTGATTGGAAA
TTGGAAACCGATATTCGAAAGAAACAACTGCTTAATTATAGTATTGATTTCGGAATCTGTATATT
TTGTGGAAACTGTGTTGAGTATTGTCCAACAAATTGTTTATCAATGACTGAAGAATATGAACTTT
CTACTTATGATCGGCACGAATTAAGTTATAATCAAATTACTTTAGGTCGTTTACCAATGGCAGTA
ATTGACGATTATACAATTCGAACAATTTTGAATTCGCCTCAAAAATAATGAGTAAACCTCCCGCG
ACTTCAAAATTGTTCTTTAATCAATTGTGAATTACTAAAAGTACTAAACTAGAATTCCGTTTTGA
TCTAATCTAAAGGGAAAGAACTGGAATGGCGTTTTTCTTTCATTTTATTCAGTCAATAATTACAA
ATACCAACTATTGATTTAACTGCTTGATGAGAATCGCATCACAGC
Right flanking sequence: Indices 154081 -- 154580
AATTCTATTCATAATTATTTCGAAATTTGAATTTATAGTGTCGAATTATCCTTTTCCCGAAAGAA
GAAAATTAGTCCAATAGTTTTACTTTTCCCTACAGTAATTTACATCCCTTAGGGTTTAATCTAAT
TAGGAATCAAATATAATTAAGTTTTTCCCGGTCGGACCAATAAAATAAGGTCATGAAAAAACAAT
TCGATTTTTTATCTTTTATTTTCCCGTACAATGGATTTACCTGGACCAATACATGATTTTATTTT
AATCTTTTTAGGATTAGGTCTTATATTAGGGGGTCTGGGAGTAGTATTATTTACCAACCCAATTT
TTTCTGCCTTTTCGTTGGGATTCGTTTTTGTTTGTATATCCTTATTCTATATTTTATCAAACTCT
TATTTTGTAGCTGCTACGCAGCTCCTTATTTATGTAGGAGCTATAAATGTTTTAATTATATTCGC
TGTGATGTTCATGAATGGTTCAGAATATTACAAGGATTTTAATAT
Found at i:154890 original size:17 final size:17
Alignment explanation
Indices: 154868--154902 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
154858 AGCAATCGCA
154868 ATTCAAATTAAACTTTT
1 ATTCAAATTAAACTTTT
154885 ATTCAAATTAAACTTTT
1 ATTCAAATTAAACTTTT
154902 A
1 A
154903 AAAGGTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.43, C:0.11, G:0.00, T:0.46
Consensus pattern (17 bp):
ATTCAAATTAAACTTTT
Left flanking sequence: Indices 154368 -- 154867
AGGGGGTCTGGGAGTAGTATTATTTACCAACCCAATTTTTTCTGCCTTTTCGTTGGGATTCGTTT
TTGTTTGTATATCCTTATTCTATATTTTATCAAACTCTTATTTTGTAGCTGCTACGCAGCTCCTT
ATTTATGTAGGAGCTATAAATGTTTTAATTATATTCGCTGTGATGTTCATGAATGGTTCAGAATA
TTACAAGGATTTTAATATTGGCACTGTTTGGGACGGGGTTACTTCCTTAGTTTGTACAAGTATTT
TTGTTTCATTAATTACTATTATTCCAGATACATCGTGGTACCGGATTATTTGGACTACCAGAGCC
AATCAGATTCTAGAGCAAGATTTGATAAGTAATGCTCAACAAATTGGAATTGGAATTCATTTATC
AACCGATTTTTTTCTTCCATTTGAATTCATTTCAATAATTCTTTTAGTTGCTTTGATAGGTGCGA
TTGCTGTGGCTCGTCAATAAAAAATCCGTCGAATTAGCAATCGCA
Right flanking sequence: Indices 154903 -- 155402
AAAGGTTTTTCACTTTTAAAAGGTTTTTCATGGATAAATTCTTTTATTTGATTTATTATCAATAT
ATTTATTTATTTTTTACTTGTGACATTCTTATTCTAGTCACTCTAACCTGGTGATGTTGAATTGT
TGTTCATATTGAAATAAAGCGAAAGTGATATGATAAGGAGTTGTTCAATGATGCTCGAACATGTA
CTTGTTTTGAGTGCCTATTTATTTTCTATTGGTATTTATGGATTGATCACGAGTCGAAATATGGT
TAGAGCCCTTATGTGTCTTGAACTTATACTGAATGCAGTTAATATAAATTTCATAACATTTTCTG
ATTTTTTTGATAATCGTCAATTAAAAGGAAATATTTTCTCAATTTTTGTTATAGCCATTGCAGCC
GCGGAAGCAGCTATTGGGTTGGCTATTGTTTCGTCAATTTATCGTAACAGAAAATCAATCCGTAT
CAATCAATCGAATTTATTGAATAAATAGTATTAATTATATAAAAT
Found at i:154919 original size:18 final size:18
Alignment explanation
Indices: 154896--154932 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
154886 TTCAAATTAA
154896 ACTTTTAAAAGGTTTTTC
1 ACTTTTAAAAGGTTTTTC
154914 ACTTTTAAAAGGTTTTTC
1 ACTTTTAAAAGGTTTTTC
154932 A
1 A
154933 TGGATAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.30, C:0.11, G:0.11, T:0.49
Consensus pattern (18 bp):
ACTTTTAAAAGGTTTTTC
Left flanking sequence: Indices 154396 -- 154895
AACCCAATTTTTTCTGCCTTTTCGTTGGGATTCGTTTTTGTTTGTATATCCTTATTCTATATTTT
ATCAAACTCTTATTTTGTAGCTGCTACGCAGCTCCTTATTTATGTAGGAGCTATAAATGTTTTAA
TTATATTCGCTGTGATGTTCATGAATGGTTCAGAATATTACAAGGATTTTAATATTGGCACTGTT
TGGGACGGGGTTACTTCCTTAGTTTGTACAAGTATTTTTGTTTCATTAATTACTATTATTCCAGA
TACATCGTGGTACCGGATTATTTGGACTACCAGAGCCAATCAGATTCTAGAGCAAGATTTGATAA
GTAATGCTCAACAAATTGGAATTGGAATTCATTTATCAACCGATTTTTTTCTTCCATTTGAATTC
ATTTCAATAATTCTTTTAGTTGCTTTGATAGGTGCGATTGCTGTGGCTCGTCAATAAAAAATCCG
TCGAATTAGCAATCGCAATTCAAATTAAACTTTTATTCAAATTAA
Right flanking sequence: Indices 154933 -- 155432
TGGATAAATTCTTTTATTTGATTTATTATCAATATATTTATTTATTTTTTACTTGTGACATTCTT
ATTCTAGTCACTCTAACCTGGTGATGTTGAATTGTTGTTCATATTGAAATAAAGCGAAAGTGATA
TGATAAGGAGTTGTTCAATGATGCTCGAACATGTACTTGTTTTGAGTGCCTATTTATTTTCTATT
GGTATTTATGGATTGATCACGAGTCGAAATATGGTTAGAGCCCTTATGTGTCTTGAACTTATACT
GAATGCAGTTAATATAAATTTCATAACATTTTCTGATTTTTTTGATAATCGTCAATTAAAAGGAA
ATATTTTCTCAATTTTTGTTATAGCCATTGCAGCCGCGGAAGCAGCTATTGGGTTGGCTATTGTT
TCGTCAATTTATCGTAACAGAAAATCAATCCGTATCAATCAATCGAATTTATTGAATAAATAGTA
TTAATTATATAAAATAGAATATTTATATTTATCAAGTCGAATTGA
Found at i:157583 original size:14 final size:13
Alignment explanation
Indices: 157555--157580 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
157545 TATGTTTTTT
157555 TTTTTAATTTAAA
1 TTTTTAATTTAAA
157568 TTTTTAATTTAAA
1 TTTTTAATTTAAA
157581 ATTGTTATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
TTTTTAATTTAAA
Left flanking sequence: Indices 157055 -- 157554
ACGAGTTTTGATCGAATACGTCTTGCTTATCTTGACGAAATGGGGGGAATGGCTACCCCAATGCC
AAAAATATTTATGATGTTCAATATCTTATCATTAGCCTCCCTTGCATTGCCAGGTATGAGCGGTT
TTTTTGCGGAATTGATAGTTTTTTTTGGAATAATTACCGACCAAAAATATCTTTTAATACCAAAA
ATACTAATTACTTTTGTAATGGCAGTTGGAATAATATTAACTCCTATTTATTTATTATCTATCTT
ACGCCAGATGTTCTATGGATACAAGCAGTTTAATACCCCAAACTCTTATTTTTTTGATTCTGGAC
CGCGCGAGTTATTTGTTTTGATTGCTATCCTTTTTCCTGTAATGGGTATTGGTATTTATCCGGAT
TTCGTTCTCTCATTATCAGTTGACAAGGTAGAAGCTATTCTATCTAATTTTTTTTATAGGTAATT
TTTATAAAATAAAATAAACAATTAAAAACTAATCTTATGTTTTTT
Right flanking sequence: Indices 157581 -- 158080
ATTGTTATAAAGTTATAAATAAAAGAAACTTTCTTTTTATTCTCTTAAATTTAAGTAAAAAAAAA
AAGAAATTGTAAACAGATATGTTTGGCATTTGTGAGAACTTTTTGAATCAAATAATATAGTGATT
CAAAAGGTTCTCATTCTCAATAGGTTATCCGAAGGTTCAGTTTCTTATATATATGTGCTATATAT
GTCTTACGTTATCCTAGATTGTATCCGTCAGATTCTTGCTTCAATTCAATTAACTGTTAATGTGA
ATGAACCATAACTATGTAACCCTATTCCTAATAAATTAACTCCGAAATAGCATATCCAAAGTATA
AGAAAGCCGATAGACGCAACAATTGCGGAATTTAAACCGTCAATTTGTTTTTTTGTTCGAGTATG
GAAATAAATGGCGAATATAATCCAGGTAATAAATGCCCAAGTTTCTTTTGGATCCCAATTCCAAT
ATGATCCCCATGCTTCATTAGCCCAGACTGCTCCCGAAAGAATAC
Found at i:160027 original size:15 final size:15
Alignment explanation
Indices: 160004--160033 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
159994 AAAAAAAATT
160004 ATTCGACATATGATA
1 ATTCGACATATGATA
*
160019 ATTCTACATATGATA
1 ATTCGACATATGATA
160034 GGATAGAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.13, G:0.10, T:0.37
Consensus pattern (15 bp):
ATTCGACATATGATA
Left flanking sequence: Indices 159504 -- 160003
GTTTTCTCTTAAATAAAGAATAGTATTTTCAAATAAAGAATCTTATTTAATTTAATAGATACCTT
GATCCCTCCTCCAGGCCAAGCATATGATCTAAAACTGAAATAGATCATTCAAAATTGATCCATAT
TTTCTATAGATAAATATGCAAGGTACTTTTATTAATTAAATTGGATTAAAATAAATAAAATAAAA
GTGATGAAGGATTTATTCTATATAGTGAGTTAGAATAATAATTTTTAAGAAAATTACAAAATAAG
GTTTAAAATCCATTATTTTGGACTAAAGATCCTAGTTGATCTGCTCTTTTTTATTCAAATAAGTA
TAAATATAAAGAAGACAAGACTTATCAATATTTATTATTGGAATTGTGTGAAATTGTGACAAGCA
AGCTGATGGGGAAAATCAAAATCCCCATCTTGTAACTATTACACTATACTAAAAAGACTAAAAAG
AAAAAAAAGTATTGTTTTTAAAATTTATTAAACAAAAAAAAAATT
Right flanking sequence: Indices 160034 -- 160533
GGATAGAAATGAAATGAGTTCAATTTAATATTGGTTAATTCAAAACATTCAAGAATAGACTTCTG
TTTTCTCTTTTCTATTTTATATTAAACTTTTCTATTTTATATTAAATTTATTACTTTATATTTAT
TAAAAATATTTATTAAAAATGAAGTCTATTTTAAATTATATTTATTTTAAATTATATTTATTTAT
TTTAAATTATATTTATTAAAAATTATTTATATATATTTTTAATTTATATATATTTATTTTTAATT
TATATATATATATATATATTTTTCTATTTTTCTATTTATTAATAATTATTTAAATAACTATTTCT
TAATTTTATTAATATTTAGTAATTTTATCAATAATTTTATTAATTATTATAATTTTTTTTTTTTA
TTTTAATTATTATATTTTATTTTAATTATTATATATTATTTTATATATTTATATATTATTTTATA
TATATTATTATTATATATATATATATTAATATATATATTATATAT
Found at i:160130 original size:20 final size:20
Alignment explanation
Indices: 160105--160144 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
160095 TCTGTTTTCT
160105 CTTTTCTATTTTATATTAAA
1 CTTTTCTATTTTATATTAAA
160125 CTTTTCTATTTTATATTAAA
1 CTTTTCTATTTTATATTAAA
160145 TTTATTACTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.10, G:0.00, T:0.60
Consensus pattern (20 bp):
CTTTTCTATTTTATATTAAA
Left flanking sequence: Indices 159605 -- 160104
GAAATAGATCATTCAAAATTGATCCATATTTTCTATAGATAAATATGCAAGGTACTTTTATTAAT
TAAATTGGATTAAAATAAATAAAATAAAAGTGATGAAGGATTTATTCTATATAGTGAGTTAGAAT
AATAATTTTTAAGAAAATTACAAAATAAGGTTTAAAATCCATTATTTTGGACTAAAGATCCTAGT
TGATCTGCTCTTTTTTATTCAAATAAGTATAAATATAAAGAAGACAAGACTTATCAATATTTATT
ATTGGAATTGTGTGAAATTGTGACAAGCAAGCTGATGGGGAAAATCAAAATCCCCATCTTGTAAC
TATTACACTATACTAAAAAGACTAAAAAGAAAAAAAAGTATTGTTTTTAAAATTTATTAAACAAA
AAAAAAATTATTCGACATATGATAATTCTACATATGATAGGATAGAAATGAAATGAGTTCAATTT
AATATTGGTTAATTCAAAACATTCAAGAATAGACTTCTGTTTTCT
Right flanking sequence: Indices 160145 -- 160644
TTTATTACTTTATATTTATTAAAAATATTTATTAAAAATGAAGTCTATTTTAAATTATATTTATT
TTAAATTATATTTATTTATTTTAAATTATATTTATTAAAAATTATTTATATATATTTTTAATTTA
TATATATTTATTTTTAATTTATATATATATATATATATTTTTCTATTTTTCTATTTATTAATAAT
TATTTAAATAACTATTTCTTAATTTTATTAATATTTAGTAATTTTATCAATAATTTTATTAATTA
TTATAATTTTTTTTTTTTATTTTAATTATTATATTTTATTTTAATTATTATATATTATTTTATAT
ATTTATATATTATTTTATATATATTATTATTATATATATATATATTAATATATATATTATATATT
ATTTTAATTTATTTTAATTATATTTATTTATATATATTATTATTGTATATATATATATTGTATAT
ATATATTAGAGTATATATATATATTAGATTATATATTAGATTATT
Found at i:160158 original size:19 final size:20
Alignment explanation
Indices: 160105--160160 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
160095 TCTGTTTTCT
*
160105 CTTTTCTATTTTATATTAAA
1 CTTTTCTACTTTATATTAAA
*
160125 CTTTTCTATTTTATATTAAA
1 CTTTTCTACTTTATATTAAA
160145 -TTTAT-TACTTTATATT
1 CTTT-TCTACTTTATATT
160161 TATTAAAAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
19 13 0.38
20 21 0.62
ACGTcount: A:0.29, C:0.09, G:0.00, T:0.62
Consensus pattern (20 bp):
CTTTTCTACTTTATATTAAA
Left flanking sequence: Indices 159605 -- 160104
GAAATAGATCATTCAAAATTGATCCATATTTTCTATAGATAAATATGCAAGGTACTTTTATTAAT
TAAATTGGATTAAAATAAATAAAATAAAAGTGATGAAGGATTTATTCTATATAGTGAGTTAGAAT
AATAATTTTTAAGAAAATTACAAAATAAGGTTTAAAATCCATTATTTTGGACTAAAGATCCTAGT
TGATCTGCTCTTTTTTATTCAAATAAGTATAAATATAAAGAAGACAAGACTTATCAATATTTATT
ATTGGAATTGTGTGAAATTGTGACAAGCAAGCTGATGGGGAAAATCAAAATCCCCATCTTGTAAC
TATTACACTATACTAAAAAGACTAAAAAGAAAAAAAAGTATTGTTTTTAAAATTTATTAAACAAA
AAAAAAATTATTCGACATATGATAATTCTACATATGATAGGATAGAAATGAAATGAGTTCAATTT
AATATTGGTTAATTCAAAACATTCAAGAATAGACTTCTGTTTTCT
Right flanking sequence: Indices 160161 -- 160660
TATTAAAAATATTTATTAAAAATGAAGTCTATTTTAAATTATATTTATTTTAAATTATATTTATT
TATTTTAAATTATATTTATTAAAAATTATTTATATATATTTTTAATTTATATATATTTATTTTTA
ATTTATATATATATATATATATTTTTCTATTTTTCTATTTATTAATAATTATTTAAATAACTATT
TCTTAATTTTATTAATATTTAGTAATTTTATCAATAATTTTATTAATTATTATAATTTTTTTTTT
TTATTTTAATTATTATATTTTATTTTAATTATTATATATTATTTTATATATTTATATATTATTTT
ATATATATTATTATTATATATATATATATTAATATATATATTATATATTATTTTAATTTATTTTA
ATTATATTTATTTATATATATTATTATTGTATATATATATATTGTATATATATATTAGAGTATAT
ATATATATTAGATTATATATTAGATTATTTAAATTATATTTATTT
Found at i:160182 original size:14 final size:13
Alignment explanation
Indices: 160156--160183 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
160146 TTATTACTTT
160156 ATATTTATTAAAA
1 ATATTTATTAAAA
160169 ATATTTATTAAAA
1 ATATTTATTAAAA
160182 AT
1 AT
160184 GAAGTCTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
ATATTTATTAAAA
Left flanking sequence: Indices 159656 -- 160155
GTACTTTTATTAATTAAATTGGATTAAAATAAATAAAATAAAAGTGATGAAGGATTTATTCTATA
TAGTGAGTTAGAATAATAATTTTTAAGAAAATTACAAAATAAGGTTTAAAATCCATTATTTTGGA
CTAAAGATCCTAGTTGATCTGCTCTTTTTTATTCAAATAAGTATAAATATAAAGAAGACAAGACT
TATCAATATTTATTATTGGAATTGTGTGAAATTGTGACAAGCAAGCTGATGGGGAAAATCAAAAT
CCCCATCTTGTAACTATTACACTATACTAAAAAGACTAAAAAGAAAAAAAAGTATTGTTTTTAAA
ATTTATTAAACAAAAAAAAAATTATTCGACATATGATAATTCTACATATGATAGGATAGAAATGA
AATGAGTTCAATTTAATATTGGTTAATTCAAAACATTCAAGAATAGACTTCTGTTTTCTCTTTTC
TATTTTATATTAAACTTTTCTATTTTATATTAAATTTATTACTTT
Right flanking sequence: Indices 160184 -- 160683
GAAGTCTATTTTAAATTATATTTATTTTAAATTATATTTATTTATTTTAAATTATATTTATTAAA
AATTATTTATATATATTTTTAATTTATATATATTTATTTTTAATTTATATATATATATATATATT
TTTCTATTTTTCTATTTATTAATAATTATTTAAATAACTATTTCTTAATTTTATTAATATTTAGT
AATTTTATCAATAATTTTATTAATTATTATAATTTTTTTTTTTTATTTTAATTATTATATTTTAT
TTTAATTATTATATATTATTTTATATATTTATATATTATTTTATATATATTATTATTATATATAT
ATATATTAATATATATATTATATATTATTTTAATTTATTTTAATTATATTTATTTATATATATTA
TTATTGTATATATATATATTGTATATATATATTAGAGTATATATATATATTAGATTATATATTAG
ATTATTTAAATTATATTTATTTATAATTTAAATTATATTTATTTA
Found at i:160209 original size:16 final size:16
Alignment explanation
Indices: 160190--160245 Score: 76
Period size: 16 Copynumber: 3.2 Consensus size: 16
160180 AAATGAAGTC
160190 TATTTTAAATTATATT
1 TATTTTAAATTATATT
160206 TATTTTAAATTATATTTATT
1 TATTTTAAA-T-TA--TATT
160226 TATTTTAAATTATATT
1 TATTTTAAATTATATT
160242 TATT
1 TATT
160246 AAAAATTATT
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
16 17 0.47
17 1 0.03
18 4 0.11
19 1 0.03
20 13 0.36
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
TATTTTAAATTATATT
Left flanking sequence: Indices 159690 -- 160189
AAAATAAAAGTGATGAAGGATTTATTCTATATAGTGAGTTAGAATAATAATTTTTAAGAAAATTA
CAAAATAAGGTTTAAAATCCATTATTTTGGACTAAAGATCCTAGTTGATCTGCTCTTTTTTATTC
AAATAAGTATAAATATAAAGAAGACAAGACTTATCAATATTTATTATTGGAATTGTGTGAAATTG
TGACAAGCAAGCTGATGGGGAAAATCAAAATCCCCATCTTGTAACTATTACACTATACTAAAAAG
ACTAAAAAGAAAAAAAAGTATTGTTTTTAAAATTTATTAAACAAAAAAAAAATTATTCGACATAT
GATAATTCTACATATGATAGGATAGAAATGAAATGAGTTCAATTTAATATTGGTTAATTCAAAAC
ATTCAAGAATAGACTTCTGTTTTCTCTTTTCTATTTTATATTAAACTTTTCTATTTTATATTAAA
TTTATTACTTTATATTTATTAAAAATATTTATTAAAAATGAAGTC
Right flanking sequence: Indices 160246 -- 160745
AAAAATTATTTATATATATTTTTAATTTATATATATTTATTTTTAATTTATATATATATATATAT
ATTTTTCTATTTTTCTATTTATTAATAATTATTTAAATAACTATTTCTTAATTTTATTAATATTT
AGTAATTTTATCAATAATTTTATTAATTATTATAATTTTTTTTTTTTATTTTAATTATTATATTT
TATTTTAATTATTATATATTATTTTATATATTTATATATTATTTTATATATATTATTATTATATA
TATATATATTAATATATATATTATATATTATTTTAATTTATTTTAATTATATTTATTTATATATA
TTATTATTGTATATATATATATTGTATATATATATTAGAGTATATATATATATTAGATTATATAT
TAGATTATTTAAATTATATTTATTTATAATTTAAATTATATTTATTTATATAAATATTTATATAA
ATAAATATATTATAAATAAATATATTAAATATTAAATGAATATTA
Found at i:160227 original size:20 final size:20
Alignment explanation
Indices: 160202--160245 Score: 88
Period size: 20 Copynumber: 2.2 Consensus size: 20
160192 TTTTAAATTA
160202 TATTTATTTTAAATTATATT
1 TATTTATTTTAAATTATATT
160222 TATTTATTTTAAATTATATT
1 TATTTATTTTAAATTATATT
160242 TATT
1 TATT
160246 AAAAATTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (20 bp):
TATTTATTTTAAATTATATT
Left flanking sequence: Indices 159702 -- 160201
ATGAAGGATTTATTCTATATAGTGAGTTAGAATAATAATTTTTAAGAAAATTACAAAATAAGGTT
TAAAATCCATTATTTTGGACTAAAGATCCTAGTTGATCTGCTCTTTTTTATTCAAATAAGTATAA
ATATAAAGAAGACAAGACTTATCAATATTTATTATTGGAATTGTGTGAAATTGTGACAAGCAAGC
TGATGGGGAAAATCAAAATCCCCATCTTGTAACTATTACACTATACTAAAAAGACTAAAAAGAAA
AAAAAGTATTGTTTTTAAAATTTATTAAACAAAAAAAAAATTATTCGACATATGATAATTCTACA
TATGATAGGATAGAAATGAAATGAGTTCAATTTAATATTGGTTAATTCAAAACATTCAAGAATAG
ACTTCTGTTTTCTCTTTTCTATTTTATATTAAACTTTTCTATTTTATATTAAATTTATTACTTTA
TATTTATTAAAAATATTTATTAAAAATGAAGTCTATTTTAAATTA
Right flanking sequence: Indices 160246 -- 160745
AAAAATTATTTATATATATTTTTAATTTATATATATTTATTTTTAATTTATATATATATATATAT
ATTTTTCTATTTTTCTATTTATTAATAATTATTTAAATAACTATTTCTTAATTTTATTAATATTT
AGTAATTTTATCAATAATTTTATTAATTATTATAATTTTTTTTTTTTATTTTAATTATTATATTT
TATTTTAATTATTATATATTATTTTATATATTTATATATTATTTTATATATATTATTATTATATA
TATATATATTAATATATATATTATATATTATTTTAATTTATTTTAATTATATTTATTTATATATA
TTATTATTGTATATATATATATTGTATATATATATTAGAGTATATATATATATTAGATTATATAT
TAGATTATTTAAATTATATTTATTTATAATTTAAATTATATTTATTTATATAAATATTTATATAA
ATAAATATATTATAAATAAATATATTAAATATTAAATGAATATTA
Found at i:160230 original size:36 final size:36
Alignment explanation
Indices: 160190--160302 Score: 120
Period size: 36 Copynumber: 3.1 Consensus size: 36
160180 AAATGAAGTC
* *
160190 TATTTTAAATTATATTTATTTTAAATTATATT-TATT
1 TATTTTAAATTATATTTATTTAAAATTAT-TTATATA
*
160226 TATTTTAAATTATATTTATTAAAAATTATTTATATA
1 TATTTTAAATTATATTTATTTAAAATTATTTATATA
* * ***
160262 TATTTTTAATTTATATATATTTATTTTTAATTTATATA
1 TA-TTTTAAATTATATTTATTTAAAATT-ATTTATATA
160300 TAT
1 TAT
160303 ATATATATAT
Statistics
Matches: 65, Mismatches: 9, Indels: 5
0.82 0.11 0.06
Matches are distributed among these distances:
35 2 0.03
36 32 0.49
37 20 0.31
38 11 0.17
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (36 bp):
TATTTTAAATTATATTTATTTAAAATTATTTATATA
Left flanking sequence: Indices 159690 -- 160189
AAAATAAAAGTGATGAAGGATTTATTCTATATAGTGAGTTAGAATAATAATTTTTAAGAAAATTA
CAAAATAAGGTTTAAAATCCATTATTTTGGACTAAAGATCCTAGTTGATCTGCTCTTTTTTATTC
AAATAAGTATAAATATAAAGAAGACAAGACTTATCAATATTTATTATTGGAATTGTGTGAAATTG
TGACAAGCAAGCTGATGGGGAAAATCAAAATCCCCATCTTGTAACTATTACACTATACTAAAAAG
ACTAAAAAGAAAAAAAAGTATTGTTTTTAAAATTTATTAAACAAAAAAAAAATTATTCGACATAT
GATAATTCTACATATGATAGGATAGAAATGAAATGAGTTCAATTTAATATTGGTTAATTCAAAAC
ATTCAAGAATAGACTTCTGTTTTCTCTTTTCTATTTTATATTAAACTTTTCTATTTTATATTAAA
TTTATTACTTTATATTTATTAAAAATATTTATTAAAAATGAAGTC
Right flanking sequence: Indices 160303 -- 160802
ATATATATATTTTTCTATTTTTCTATTTATTAATAATTATTTAAATAACTATTTCTTAATTTTAT
TAATATTTAGTAATTTTATCAATAATTTTATTAATTATTATAATTTTTTTTTTTTATTTTAATTA
TTATATTTTATTTTAATTATTATATATTATTTTATATATTTATATATTATTTTATATATATTATT
ATTATATATATATATATTAATATATATATTATATATTATTTTAATTTATTTTAATTATATTTATT
TATATATATTATTATTGTATATATATATATTGTATATATATATTAGAGTATATATATATATTAGA
TTATATATTAGATTATTTAAATTATATTTATTTATAATTTAAATTATATTTATTTATATAAATAT
TTATATAAATAAATATATTATAAATAAATATATTAAATATTAAATGAATATTAAATAATTTTTAT
TATAATATATAATTATAATATATTTTTATTATAATATATAATTAT
Found at i:160251 original size:16 final size:16
Alignment explanation
Indices: 160154--160254 Score: 66
Period size: 16 Copynumber: 6.2 Consensus size: 16
160144 ATTTATTACT
160154 TTATATTTATT-AAAA
1 TTATATTTATTAAAAA
160169 --ATATTTATTAAAAA
1 TTATATTTATTAAAAA
* * **
160183 TGA-AGTCTATTTTAAA
1 TTATA-TTTATTAAAAA
**
160199 TTATATTTATTTTAAA
1 TTATATTTATTAAAAA
*
160215 TTATATTTATTTATTTTAAA
1 TTATATTTA-TTA---AAAA
160235 TTATATTTATTAAAAA
1 TTATATTTATTAAAAA
160251 TTAT
1 TTAT
160255 TTATATATAT
Statistics
Matches: 70, Mismatches: 7, Indels: 17
0.74 0.07 0.18
Matches are distributed among these distances:
13 9 0.13
14 4 0.06
15 1 0.01
16 37 0.53
17 3 0.04
19 3 0.04
20 13 0.19
ACGTcount: A:0.43, C:0.01, G:0.02, T:0.54
Consensus pattern (16 bp):
TTATATTTATTAAAAA
Left flanking sequence: Indices 159654 -- 160153
AGGTACTTTTATTAATTAAATTGGATTAAAATAAATAAAATAAAAGTGATGAAGGATTTATTCTA
TATAGTGAGTTAGAATAATAATTTTTAAGAAAATTACAAAATAAGGTTTAAAATCCATTATTTTG
GACTAAAGATCCTAGTTGATCTGCTCTTTTTTATTCAAATAAGTATAAATATAAAGAAGACAAGA
CTTATCAATATTTATTATTGGAATTGTGTGAAATTGTGACAAGCAAGCTGATGGGGAAAATCAAA
ATCCCCATCTTGTAACTATTACACTATACTAAAAAGACTAAAAAGAAAAAAAAGTATTGTTTTTA
AAATTTATTAAACAAAAAAAAAATTATTCGACATATGATAATTCTACATATGATAGGATAGAAAT
GAAATGAGTTCAATTTAATATTGGTTAATTCAAAACATTCAAGAATAGACTTCTGTTTTCTCTTT
TCTATTTTATATTAAACTTTTCTATTTTATATTAAATTTATTACT
Right flanking sequence: Indices 160255 -- 160754
TTATATATATTTTTAATTTATATATATTTATTTTTAATTTATATATATATATATATATTTTTCTA
TTTTTCTATTTATTAATAATTATTTAAATAACTATTTCTTAATTTTATTAATATTTAGTAATTTT
ATCAATAATTTTATTAATTATTATAATTTTTTTTTTTTATTTTAATTATTATATTTTATTTTAAT
TATTATATATTATTTTATATATTTATATATTATTTTATATATATTATTATTATATATATATATAT
TAATATATATATTATATATTATTTTAATTTATTTTAATTATATTTATTTATATATATTATTATTG
TATATATATATATTGTATATATATATTAGAGTATATATATATATTAGATTATATATTAGATTATT
TAAATTATATTTATTTATAATTTAAATTATATTTATTTATATAAATATTTATATAAATAAATATA
TTATAAATAAATATATTAAATATTAAATGAATATTAAATAATTTT
Found at i:160280 original size:21 final size:21
Alignment explanation
Indices: 160251--160306 Score: 94
Period size: 21 Copynumber: 2.7 Consensus size: 21
160241 TTATTAAAAA
*
160251 TTATTTATATATATTTTTAAT
1 TTATATATATATATTTTTAAT
*
160272 TTATATATATTTATTTTTAAT
1 TTATATATATATATTTTTAAT
160293 TTATATATATATAT
1 TTATATATATATAT
160307 ATATATTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (21 bp):
TTATATATATATATTTTTAAT
Left flanking sequence: Indices 159751 -- 160250
ATTACAAAATAAGGTTTAAAATCCATTATTTTGGACTAAAGATCCTAGTTGATCTGCTCTTTTTT
ATTCAAATAAGTATAAATATAAAGAAGACAAGACTTATCAATATTTATTATTGGAATTGTGTGAA
ATTGTGACAAGCAAGCTGATGGGGAAAATCAAAATCCCCATCTTGTAACTATTACACTATACTAA
AAAGACTAAAAAGAAAAAAAAGTATTGTTTTTAAAATTTATTAAACAAAAAAAAAATTATTCGAC
ATATGATAATTCTACATATGATAGGATAGAAATGAAATGAGTTCAATTTAATATTGGTTAATTCA
AAACATTCAAGAATAGACTTCTGTTTTCTCTTTTCTATTTTATATTAAACTTTTCTATTTTATAT
TAAATTTATTACTTTATATTTATTAAAAATATTTATTAAAAATGAAGTCTATTTTAAATTATATT
TATTTTAAATTATATTTATTTATTTTAAATTATATTTATTAAAAA
Right flanking sequence: Indices 160307 -- 160806
ATATATTTTTCTATTTTTCTATTTATTAATAATTATTTAAATAACTATTTCTTAATTTTATTAAT
ATTTAGTAATTTTATCAATAATTTTATTAATTATTATAATTTTTTTTTTTTATTTTAATTATTAT
ATTTTATTTTAATTATTATATATTATTTTATATATTTATATATTATTTTATATATATTATTATTA
TATATATATATATTAATATATATATTATATATTATTTTAATTTATTTTAATTATATTTATTTATA
TATATTATTATTGTATATATATATATTGTATATATATATTAGAGTATATATATATATTAGATTAT
ATATTAGATTATTTAAATTATATTTATTTATAATTTAAATTATATTTATTTATATAAATATTTAT
ATAAATAAATATATTATAAATAAATATATTAAATATTAAATGAATATTAAATAATTTTTATTATA
ATATATAATTATAATATATTTTTATTATAATATATAATTATTATA
Found at i:160424 original size:19 final size:19
Alignment explanation
Indices: 160419--160555 Score: 98
Period size: 19 Copynumber: 6.8 Consensus size: 19
160409 AATTTTTTTT
160419 TTTTATTTTAATTATTATA
1 TTTTATTTTAATTATTATA
160438 TTTTATTTTAATTATTATA
1 TTTTATTTTAATTATTATA
*
160457 TATTATTTT-ATATATTTATA
1 TTTTATTTTAAT-TA-TTATA
*
160477 TATTATTTTATATATATTAT-
1 TTTTATTTTA-AT-TATTATA
* *
160497 TATTATATATATATATATTAATA
1 TTTTAT-TTTA-AT-TATT-ATA
* * *
160520 TATATATTATATATTATTTTA
1 T-TTTATTTTA-ATTATTATA
*
160541 ATTTATTTTAATTAT
1 TTTTATTTTAATTAT
160556 ATTTATTTAT
Statistics
Matches: 102, Mismatches: 8, Indels: 16
0.81 0.06 0.13
Matches are distributed among these distances:
18 2 0.02
19 34 0.33
20 27 0.26
21 17 0.17
22 11 0.11
23 8 0.08
24 3 0.03
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (19 bp):
TTTTATTTTAATTATTATA
Left flanking sequence: Indices 159919 -- 160418
CATCTTGTAACTATTACACTATACTAAAAAGACTAAAAAGAAAAAAAAGTATTGTTTTTAAAATT
TATTAAACAAAAAAAAAATTATTCGACATATGATAATTCTACATATGATAGGATAGAAATGAAAT
GAGTTCAATTTAATATTGGTTAATTCAAAACATTCAAGAATAGACTTCTGTTTTCTCTTTTCTAT
TTTATATTAAACTTTTCTATTTTATATTAAATTTATTACTTTATATTTATTAAAAATATTTATTA
AAAATGAAGTCTATTTTAAATTATATTTATTTTAAATTATATTTATTTATTTTAAATTATATTTA
TTAAAAATTATTTATATATATTTTTAATTTATATATATTTATTTTTAATTTATATATATATATAT
ATATTTTTCTATTTTTCTATTTATTAATAATTATTTAAATAACTATTTCTTAATTTTATTAATAT
TTAGTAATTTTATCAATAATTTTATTAATTATTATAATTTTTTTT
Right flanking sequence: Indices 160556 -- 161055
ATTTATTTATATATATTATTATTGTATATATATATATTGTATATATATATTAGAGTATATATATA
TATTAGATTATATATTAGATTATTTAAATTATATTTATTTATAATTTAAATTATATTTATTTATA
TAAATATTTATATAAATAAATATATTATAAATAAATATATTAAATATTAAATGAATATTAAATAA
TTTTTATTATAATATATAATTATAATATATTTTTATTATAATATATAATTATTATATATAATATG
ATAAACTATAATATGATAAACAATAAACTAACCAATAAACTAAACAATAAACAAAAAAAACTAAA
CAAAAAAAACTAGAACTTTCCTTACGTCTAAAGGGAGTCAGATTATTCCACCGTTTGATTTTTTA
TTTGTTGCACAAAAAAACTTTTTGAATTATTAGTAGAAAGAGATTTTGCTAACGAAAAAGCTTTC
AAGGCTGCCCAATATCCCTTTCTTTTCCAAATATTTTTTCGAATA
Found at i:160470 original size:2 final size:2
Alignment explanation
Indices: 160453--160725 Score: 91
Period size: 2 Copynumber: 150.5 Consensus size: 2
160443 TTTTAATTAT
* * *
160453 TA TA TA T- TA T- TT TA TA TA TT TA TA TA T- TA T- TT TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
160491 TA T- TA T- TA T- TA TA TA TA TA TA TA T- TA -A TA TA TA TA T-
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * *
160527 TA TA TA T- TA T- TT TA -A TT TA T- TT TA -A T- TA TA TT TA TT
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
160563 TA TA TA TA T- TA T- TA T- TG TA TA TA TA TA TA T- TG TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
160601 TA TA T- TA GA GTA TA TA TA TA TA T- TA GA T- TA TA TA T- TA GA
1 TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * * * *
160640 T- TA TT TA AA T- TA TA TT TA TT TA TA -A TT TA AA T- TA TA TT
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * * *
160678 TA TT TA TA TA AA TA TT TA TA TA AA TA AA TA TA T- TA TA AA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
160719 AA TA TA T
1 TA TA TA T
160726 TAAATATTAA
Statistics
Matches: 193, Mismatches: 48, Indels: 60
0.64 0.16 0.20
Matches are distributed among these distances:
1 29 0.15
2 163 0.84
3 1 0.01
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (2 bp):
TA
Left flanking sequence: Indices 159953 -- 160452
AAAAAGAAAAAAAAGTATTGTTTTTAAAATTTATTAAACAAAAAAAAAATTATTCGACATATGAT
AATTCTACATATGATAGGATAGAAATGAAATGAGTTCAATTTAATATTGGTTAATTCAAAACATT
CAAGAATAGACTTCTGTTTTCTCTTTTCTATTTTATATTAAACTTTTCTATTTTATATTAAATTT
ATTACTTTATATTTATTAAAAATATTTATTAAAAATGAAGTCTATTTTAAATTATATTTATTTTA
AATTATATTTATTTATTTTAAATTATATTTATTAAAAATTATTTATATATATTTTTAATTTATAT
ATATTTATTTTTAATTTATATATATATATATATATTTTTCTATTTTTCTATTTATTAATAATTAT
TTAAATAACTATTTCTTAATTTTATTAATATTTAGTAATTTTATCAATAATTTTATTAATTATTA
TAATTTTTTTTTTTTATTTTAATTATTATATTTTATTTTAATTAT
Right flanking sequence: Indices 160726 -- 161225
TAAATATTAAATGAATATTAAATAATTTTTATTATAATATATAATTATAATATATTTTTATTATA
ATATATAATTATTATATATAATATGATAAACTATAATATGATAAACAATAAACTAACCAATAAAC
TAAACAATAAACAAAAAAAACTAAACAAAAAAAACTAGAACTTTCCTTACGTCTAAAGGGAGTCA
GATTATTCCACCGTTTGATTTTTTATTTGTTGCACAAAAAAACTTTTTGAATTATTAGTAGAAAG
AGATTTTGCTAACGAAAAAGCTTTCAAGGCTGCCCAATATCCCTTTCTTTTCCAAATATTTTTTC
GAATACGCTTTTTGGATATAGAAGTACGCTTTTTTGGAACTGCCATTTCATTTCAAGAATGAAGA
AATTATTTCTTATAGTTGGATGTGAAAGACATCTATTTTTCAAAAAAAAATTGTTCTTTAGTATT
TTATTCATTATGTATCGATTTTTTTTCCAAAGTCTATTCAGTTTA
Found at i:160473 original size:47 final size:48
Alignment explanation
Indices: 160398--160555 Score: 142
Period size: 47 Copynumber: 3.2 Consensus size: 48
160388 AATAATTTTA
* * *
160398 TTAATTATTATA-ATTTTTTTTTTTTATTTTA-ATTATTATATTTTATT
1 TTAATTATTATATA-TTATTTTATATATTTTATATTATTATATTTTATT
160445 TTAATTATTATATATTATTTTATATATTTATATATTATTTTATATATATTATT
1 TTAATTATTATATATTATTTTATATATTT-TATATTA--TTATAT-T-TTATT
* * * * *
160498 ATT-ATATATATATATATTAATATATATATTATATATTATTTTAATTTATT
1 -TTAAT-TAT-TATATATTATTTTATATATTTTATATTATTATATTTTATT
160548 TTAATTAT
1 TTAATTAT
160556 ATTTATTTAT
Statistics
Matches: 92, Mismatches: 8, Indels: 20
0.77 0.07 0.17
Matches are distributed among these distances:
47 24 0.26
48 3 0.03
49 9 0.10
50 7 0.08
51 7 0.08
52 5 0.05
53 7 0.08
54 12 0.13
55 18 0.20
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (48 bp):
TTAATTATTATATATTATTTTATATATTTTATATTATTATATTTTATT
Left flanking sequence: Indices 159898 -- 160397
GATGGGGAAAATCAAAATCCCCATCTTGTAACTATTACACTATACTAAAAAGACTAAAAAGAAAA
AAAAGTATTGTTTTTAAAATTTATTAAACAAAAAAAAAATTATTCGACATATGATAATTCTACAT
ATGATAGGATAGAAATGAAATGAGTTCAATTTAATATTGGTTAATTCAAAACATTCAAGAATAGA
CTTCTGTTTTCTCTTTTCTATTTTATATTAAACTTTTCTATTTTATATTAAATTTATTACTTTAT
ATTTATTAAAAATATTTATTAAAAATGAAGTCTATTTTAAATTATATTTATTTTAAATTATATTT
ATTTATTTTAAATTATATTTATTAAAAATTATTTATATATATTTTTAATTTATATATATTTATTT
TTAATTTATATATATATATATATATTTTTCTATTTTTCTATTTATTAATAATTATTTAAATAACT
ATTTCTTAATTTTATTAATATTTAGTAATTTTATCAATAATTTTA
Right flanking sequence: Indices 160556 -- 161055
ATTTATTTATATATATTATTATTGTATATATATATATTGTATATATATATTAGAGTATATATATA
TATTAGATTATATATTAGATTATTTAAATTATATTTATTTATAATTTAAATTATATTTATTTATA
TAAATATTTATATAAATAAATATATTATAAATAAATATATTAAATATTAAATGAATATTAAATAA
TTTTTATTATAATATATAATTATAATATATTTTTATTATAATATATAATTATTATATATAATATG
ATAAACTATAATATGATAAACAATAAACTAACCAATAAACTAAACAATAAACAAAAAAAACTAAA
CAAAAAAAACTAGAACTTTCCTTACGTCTAAAGGGAGTCAGATTATTCCACCGTTTGATTTTTTA
TTTGTTGCACAAAAAAACTTTTTGAATTATTAGTAGAAAGAGATTTTGCTAACGAAAAAGCTTTC
AAGGCTGCCCAATATCCCTTTCTTTTCCAAATATTTTTTCGAATA
Found at i:160555 original size:93 final size:97
Alignment explanation
Indices: 160431--160663 Score: 266
Period size: 97 Copynumber: 2.4 Consensus size: 97
160421 TTATTTTAAT
* * *
160431 TATTATATTTTATTTTAATTATTATATATTAT-TTTATATATTTATA-TATTATTTTATATATAT
1 TATTATATATTATTTTAATTATTATATATTATATTTATATATATATATTATTATTGTATATATAT
* * *
160494 -TATTAT-TATATATATATATATTA-ATATATA
66 ATATTGTATATATATAT-TAGAGTATATATATA
* *
160524 TATTATATATTATTTTAATTTATTTTA-ATTATATTTATTTATATATATTATTATTGTATATATA
1 TATTATATATTATTTTAA-TTATTATATATTATATTTATATATATATATTATTATTGTATATATA
160588 TATATTGTATATATATATTAGAGTATATATATA
65 TATATTGTATATATATATTAGAGTATATATATA
* * * *
160621 TATTAGAT-TATATATTAGATTATT-TAAATTATATTTATTTATA
1 TATTATATAT-TATTTTA-ATTATTATATATTATATTTATATATA
160664 ATTTAAATTA
Statistics
Matches: 121, Mismatches: 10, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
93 22 0.18
94 19 0.16
95 16 0.13
96 13 0.11
97 50 0.41
98 1 0.01
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.59
Consensus pattern (97 bp):
TATTATATATTATTTTAATTATTATATATTATATTTATATATATATATTATTATTGTATATATAT
ATATTGTATATATATATTAGAGTATATATATA
Left flanking sequence: Indices 159931 -- 160430
ATTACACTATACTAAAAAGACTAAAAAGAAAAAAAAGTATTGTTTTTAAAATTTATTAAACAAAA
AAAAAATTATTCGACATATGATAATTCTACATATGATAGGATAGAAATGAAATGAGTTCAATTTA
ATATTGGTTAATTCAAAACATTCAAGAATAGACTTCTGTTTTCTCTTTTCTATTTTATATTAAAC
TTTTCTATTTTATATTAAATTTATTACTTTATATTTATTAAAAATATTTATTAAAAATGAAGTCT
ATTTTAAATTATATTTATTTTAAATTATATTTATTTATTTTAAATTATATTTATTAAAAATTATT
TATATATATTTTTAATTTATATATATTTATTTTTAATTTATATATATATATATATATTTTTCTAT
TTTTCTATTTATTAATAATTATTTAAATAACTATTTCTTAATTTTATTAATATTTAGTAATTTTA
TCAATAATTTTATTAATTATTATAATTTTTTTTTTTTATTTTAAT
Right flanking sequence: Indices 160664 -- 161163
ATTTAAATTATATTTATTTATATAAATATTTATATAAATAAATATATTATAAATAAATATATTAA
ATATTAAATGAATATTAAATAATTTTTATTATAATATATAATTATAATATATTTTTATTATAATA
TATAATTATTATATATAATATGATAAACTATAATATGATAAACAATAAACTAACCAATAAACTAA
ACAATAAACAAAAAAAACTAAACAAAAAAAACTAGAACTTTCCTTACGTCTAAAGGGAGTCAGAT
TATTCCACCGTTTGATTTTTTATTTGTTGCACAAAAAAACTTTTTGAATTATTAGTAGAAAGAGA
TTTTGCTAACGAAAAAGCTTTCAAGGCTGCCCAATATCCCTTTCTTTTCCAAATATTTTTTCGAA
TACGCTTTTTGGATATAGAAGTACGCTTTTTTGGAACTGCCATTTCATTTCAAGAATGAAGAAAT
TATTTCTTATAGTTGGATGTGAAAGACATCTATTTTTCAAAAAAA
Found at i:160563 original size:19 final size:19
Alignment explanation
Indices: 160202--160565 Score: 71
Period size: 19 Copynumber: 19.4 Consensus size: 19
160192 TTTTAAATTA
160202 TATTTATTTTAAATTATATT
1 TATTTATTTT-AATTATATT
160222 TATTTATTTTAAATTATATT
1 TATTTATTTT-AATTATATT
**
160242 TA-TTA--AAAATTAT-TT
1 TATTTATTTTAATTATATT
* *
160257 ATATATATTTTTAATTTATATA
1 -TATTTA-TTTTAA-TTATATT
*
160279 TATTTATTTTTAATT-TATA
1 TATTTA-TTTTAATTATATT
* *
160298 TATATA-TAT-A-TATATT
1 TATTTATTTTAATTATATT
*
160314 T-TTCTATTTTTCTATT-TATT
1 TATT-TA-TTTT-AATTATATT
* * *
160334 AATAATTATTTAAATAACTATT
1 --TATTTATTTTAATTA-TATT
* *
160356 TCTTAATTTT-ATTAATATT
1 TATTTATTTTAATT-ATATT
* * *
160375 TAGTAATTTT-ATCAATAATTT
1 TATTTATTTTAAT-TAT-A-TT
* * *
160396 TATTAATTATTATAATTTTTTT
1 TA-T--TTATTTTAATTATATT
* *
160418 TTTTTATTTTAATTAT-TA
1 TATTTATTTTAATTATATT
*
160436 TATTTTATTTTAATTAT-TA
1 TA-TTTATTTTAATTATATT
160455 TATATTATTTT-A-TATATT
1 TAT-TTATTTTAATTATATT
* *
160473 TATATATTATT--TTATATA
1 TATTTATT-TTAATTATATT
*
160491 TA-TTA--TT-ATTATATA
1 TATTTATTTTAATTATATT
* * *
160506 TATATATATTAA-TATATA
1 TATTTATTTTAATTATATT
*
160524 TA-TTA-TAT-ATTAT-TT
1 TATTTATTTTAATTATATT
160539 TAATTTATTTTAATTATATT
1 T-ATTTATTTTAATTATATT
160559 TATTTAT
1 TATTTAT
160566 ATATATTATT
Statistics
Matches: 256, Mismatches: 45, Indels: 87
0.66 0.12 0.22
Matches are distributed among these distances:
14 2 0.01
15 16 0.06
16 22 0.09
17 18 0.07
18 31 0.12
19 78 0.30
20 44 0.17
21 25 0.10
22 11 0.04
23 1 0.00
24 6 0.02
25 2 0.01
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.62
Consensus pattern (19 bp):
TATTTATTTTAATTATATT
Left flanking sequence: Indices 159702 -- 160201
ATGAAGGATTTATTCTATATAGTGAGTTAGAATAATAATTTTTAAGAAAATTACAAAATAAGGTT
TAAAATCCATTATTTTGGACTAAAGATCCTAGTTGATCTGCTCTTTTTTATTCAAATAAGTATAA
ATATAAAGAAGACAAGACTTATCAATATTTATTATTGGAATTGTGTGAAATTGTGACAAGCAAGC
TGATGGGGAAAATCAAAATCCCCATCTTGTAACTATTACACTATACTAAAAAGACTAAAAAGAAA
AAAAAGTATTGTTTTTAAAATTTATTAAACAAAAAAAAAATTATTCGACATATGATAATTCTACA
TATGATAGGATAGAAATGAAATGAGTTCAATTTAATATTGGTTAATTCAAAACATTCAAGAATAG
ACTTCTGTTTTCTCTTTTCTATTTTATATTAAACTTTTCTATTTTATATTAAATTTATTACTTTA
TATTTATTAAAAATATTTATTAAAAATGAAGTCTATTTTAAATTA
Right flanking sequence: Indices 160566 -- 161065
ATATATTATTATTGTATATATATATATTGTATATATATATTAGAGTATATATATATATTAGATTA
TATATTAGATTATTTAAATTATATTTATTTATAATTTAAATTATATTTATTTATATAAATATTTA
TATAAATAAATATATTATAAATAAATATATTAAATATTAAATGAATATTAAATAATTTTTATTAT
AATATATAATTATAATATATTTTTATTATAATATATAATTATTATATATAATATGATAAACTATA
ATATGATAAACAATAAACTAACCAATAAACTAAACAATAAACAAAAAAAACTAAACAAAAAAAAC
TAGAACTTTCCTTACGTCTAAAGGGAGTCAGATTATTCCACCGTTTGATTTTTTATTTGTTGCAC
AAAAAAACTTTTTGAATTATTAGTAGAAAGAGATTTTGCTAACGAAAAAGCTTTCAAGGCTGCCC
AATATCCCTTTCTTTTCCAAATATTTTTTCGAATACGCTTTTTGG
Found at i:160652 original size:78 final size:77
Alignment explanation
Indices: 160472--160637 Score: 205
Period size: 78 Copynumber: 2.1 Consensus size: 77
160462 TTTTATATAT
*
160472 TTATATATTATTTTATATATATTATTATTATATATATATATATTAATATATATATTATATATTAT
1 TTATATATTA-TTTATATATATTATTATTATATATATATATATTAATATATATATTAGATATTA-
* *
160537 TTTAATTTATTTTAA
64 -TTAATATATATTAA
* *
160552 TTATAT-TTATTTATATATATTATTATTGTATATATATATATTGTATATATATATTAGAGTA-TA
1 TTATATATTATTTATATATATTATTATTATATATATATATATT-AATATATATATTAGA-TATTA
160615 -T-ATATATATTAGA
64 TTAATATATATTA-A
160628 TTATATATTA
1 TTATATATTA
160638 GATTATTTAA
Statistics
Matches: 77, Mismatches: 5, Indels: 11
0.83 0.05 0.12
Matches are distributed among these distances:
75 8 0.10
76 8 0.10
77 3 0.04
78 32 0.42
79 18 0.23
80 8 0.10
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (77 bp):
TTATATATTATTTATATATATTATTATTATATATATATATATTAATATATATATTAGATATTATT
AATATATATTAA
Left flanking sequence: Indices 159972 -- 160471
GTTTTTAAAATTTATTAAACAAAAAAAAAATTATTCGACATATGATAATTCTACATATGATAGGA
TAGAAATGAAATGAGTTCAATTTAATATTGGTTAATTCAAAACATTCAAGAATAGACTTCTGTTT
TCTCTTTTCTATTTTATATTAAACTTTTCTATTTTATATTAAATTTATTACTTTATATTTATTAA
AAATATTTATTAAAAATGAAGTCTATTTTAAATTATATTTATTTTAAATTATATTTATTTATTTT
AAATTATATTTATTAAAAATTATTTATATATATTTTTAATTTATATATATTTATTTTTAATTTAT
ATATATATATATATATTTTTCTATTTTTCTATTTATTAATAATTATTTAAATAACTATTTCTTAA
TTTTATTAATATTTAGTAATTTTATCAATAATTTTATTAATTATTATAATTTTTTTTTTTTATTT
TAATTATTATATTTTATTTTAATTATTATATATTATTTTATATAT
Right flanking sequence: Indices 160638 -- 161137
GATTATTTAAATTATATTTATTTATAATTTAAATTATATTTATTTATATAAATATTTATATAAAT
AAATATATTATAAATAAATATATTAAATATTAAATGAATATTAAATAATTTTTATTATAATATAT
AATTATAATATATTTTTATTATAATATATAATTATTATATATAATATGATAAACTATAATATGAT
AAACAATAAACTAACCAATAAACTAAACAATAAACAAAAAAAACTAAACAAAAAAAACTAGAACT
TTCCTTACGTCTAAAGGGAGTCAGATTATTCCACCGTTTGATTTTTTATTTGTTGCACAAAAAAA
CTTTTTGAATTATTAGTAGAAAGAGATTTTGCTAACGAAAAAGCTTTCAAGGCTGCCCAATATCC
CTTTCTTTTCCAAATATTTTTTCGAATACGCTTTTTGGATATAGAAGTACGCTTTTTTGGAACTG
CCATTTCATTTCAAGAATGAAGAAATTATTTCTTATAGTTGGATG
Found at i:160657 original size:11 final size:11
Alignment explanation
Indices: 160641--160679 Score: 53
Period size: 11 Copynumber: 3.5 Consensus size: 11
160631 TATATTAGAT
160641 TATTTAAATTA
1 TATTTAAATTA
*
160652 TATTT-ATTTA
1 TATTTAAATTA
160662 TAATTTAAATTA
1 T-ATTTAAATTA
160674 TATTTA
1 TATTTA
160680 TTTATATAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
10 5 0.21
11 14 0.58
12 5 0.21
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (11 bp):
TATTTAAATTA
Left flanking sequence: Indices 160141 -- 160640
TAAATTTATTACTTTATATTTATTAAAAATATTTATTAAAAATGAAGTCTATTTTAAATTATATT
TATTTTAAATTATATTTATTTATTTTAAATTATATTTATTAAAAATTATTTATATATATTTTTAA
TTTATATATATTTATTTTTAATTTATATATATATATATATATTTTTCTATTTTTCTATTTATTAA
TAATTATTTAAATAACTATTTCTTAATTTTATTAATATTTAGTAATTTTATCAATAATTTTATTA
ATTATTATAATTTTTTTTTTTTATTTTAATTATTATATTTTATTTTAATTATTATATATTATTTT
ATATATTTATATATTATTTTATATATATTATTATTATATATATATATATTAATATATATATTATA
TATTATTTTAATTTATTTTAATTATATTTATTTATATATATTATTATTGTATATATATATATTGT
ATATATATATTAGAGTATATATATATATTAGATTATATATTAGAT
Right flanking sequence: Indices 160680 -- 161179
TTTATATAAATATTTATATAAATAAATATATTATAAATAAATATATTAAATATTAAATGAATATT
AAATAATTTTTATTATAATATATAATTATAATATATTTTTATTATAATATATAATTATTATATAT
AATATGATAAACTATAATATGATAAACAATAAACTAACCAATAAACTAAACAATAAACAAAAAAA
ACTAAACAAAAAAAACTAGAACTTTCCTTACGTCTAAAGGGAGTCAGATTATTCCACCGTTTGAT
TTTTTATTTGTTGCACAAAAAAACTTTTTGAATTATTAGTAGAAAGAGATTTTGCTAACGAAAAA
GCTTTCAAGGCTGCCCAATATCCCTTTCTTTTCCAAATATTTTTTCGAATACGCTTTTTGGATAT
AGAAGTACGCTTTTTTGGAACTGCCATTTCATTTCAAGAATGAAGAAATTATTTCTTATAGTTGG
ATGTGAAAGACATCTATTTTTCAAAAAAAAATTGTTCTTTAGTAT
Found at i:160716 original size:15 final size:15
Alignment explanation
Indices: 160685--160727 Score: 68
Period size: 15 Copynumber: 2.8 Consensus size: 15
160675 ATTTATTTAT
*
160685 ATAAATATTTATATAA
1 ATAAATATAT-TATAA
160701 ATAAATATATTATAA
1 ATAAATATATTATAA
160716 ATAAATATATTA
1 ATAAATATATTA
160728 AATATTAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
15 17 0.65
16 9 0.35
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (15 bp):
ATAAATATATTATAA
Left flanking sequence: Indices 160185 -- 160684
AAGTCTATTTTAAATTATATTTATTTTAAATTATATTTATTTATTTTAAATTATATTTATTAAAA
ATTATTTATATATATTTTTAATTTATATATATTTATTTTTAATTTATATATATATATATATATTT
TTCTATTTTTCTATTTATTAATAATTATTTAAATAACTATTTCTTAATTTTATTAATATTTAGTA
ATTTTATCAATAATTTTATTAATTATTATAATTTTTTTTTTTTATTTTAATTATTATATTTTATT
TTAATTATTATATATTATTTTATATATTTATATATTATTTTATATATATTATTATTATATATATA
TATATTAATATATATATTATATATTATTTTAATTTATTTTAATTATATTTATTTATATATATTAT
TATTGTATATATATATATTGTATATATATATTAGAGTATATATATATATTAGATTATATATTAGA
TTATTTAAATTATATTTATTTATAATTTAAATTATATTTATTTAT
Right flanking sequence: Indices 160728 -- 161227
AATATTAAATGAATATTAAATAATTTTTATTATAATATATAATTATAATATATTTTTATTATAAT
ATATAATTATTATATATAATATGATAAACTATAATATGATAAACAATAAACTAACCAATAAACTA
AACAATAAACAAAAAAAACTAAACAAAAAAAACTAGAACTTTCCTTACGTCTAAAGGGAGTCAGA
TTATTCCACCGTTTGATTTTTTATTTGTTGCACAAAAAAACTTTTTGAATTATTAGTAGAAAGAG
ATTTTGCTAACGAAAAAGCTTTCAAGGCTGCCCAATATCCCTTTCTTTTCCAAATATTTTTTCGA
ATACGCTTTTTGGATATAGAAGTACGCTTTTTTGGAACTGCCATTTCATTTCAAGAATGAAGAAA
TTATTTCTTATAGTTGGATGTGAAAGACATCTATTTTTCAAAAAAAAATTGTTCTTTAGTATTTT
ATTCATTATGTATCGATTTTTTTTCCAAAGTCTATTCAGTTTAAA
Found at i:160774 original size:13 final size:13
Alignment explanation
Indices: 160756--160812 Score: 69
Period size: 13 Copynumber: 4.2 Consensus size: 13
160746 AATAATTTTT
160756 ATTATAATATATA
1 ATTATAATATATA
*
160769 ATTATAATATATTTTT
1 ATTATAATATA---TA
160785 ATTATAATATATA
1 ATTATAATATATA
*
160798 ATTATTATATATA
1 ATTATAATATATA
160811 AT
1 AT
160813 ATGATAAACT
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
13 26 0.68
16 12 0.32
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
ATTATAATATATA
Left flanking sequence: Indices 160256 -- 160755
TATATATATTTTTAATTTATATATATTTATTTTTAATTTATATATATATATATATATTTTTCTAT
TTTTCTATTTATTAATAATTATTTAAATAACTATTTCTTAATTTTATTAATATTTAGTAATTTTA
TCAATAATTTTATTAATTATTATAATTTTTTTTTTTTATTTTAATTATTATATTTTATTTTAATT
ATTATATATTATTTTATATATTTATATATTATTTTATATATATTATTATTATATATATATATATT
AATATATATATTATATATTATTTTAATTTATTTTAATTATATTTATTTATATATATTATTATTGT
ATATATATATATTGTATATATATATTAGAGTATATATATATATTAGATTATATATTAGATTATTT
AAATTATATTTATTTATAATTTAAATTATATTTATTTATATAAATATTTATATAAATAAATATAT
TATAAATAAATATATTAAATATTAAATGAATATTAAATAATTTTT
Right flanking sequence: Indices 160813 -- 161312
ATGATAAACTATAATATGATAAACAATAAACTAACCAATAAACTAAACAATAAACAAAAAAAACT
AAACAAAAAAAACTAGAACTTTCCTTACGTCTAAAGGGAGTCAGATTATTCCACCGTTTGATTTT
TTATTTGTTGCACAAAAAAACTTTTTGAATTATTAGTAGAAAGAGATTTTGCTAACGAAAAAGCT
TTCAAGGCTGCCCAATATCCCTTTCTTTTCCAAATATTTTTTCGAATACGCTTTTTGGATATAGA
AGTACGCTTTTTTGGAACTGCCATTTCATTTCAAGAATGAAGAAATTATTTCTTATAGTTGGATG
TGAAAGACATCTATTTTTCAAAAAAAAATTGTTCTTTAGTATTTTATTCATTATGTATCGATTTT
TTTTCCAAAGTCTATTCAGTTTAAAAGTCTATTCTGTTTATAAAAACGTCTGTCTGCTTACATTT
TGATTTCTATTTCTTTTTTTTTTCCTCCTATTATATTTATACATG
Found at i:160786 original size:29 final size:29
Alignment explanation
Indices: 160742--160809 Score: 113
Period size: 29 Copynumber: 2.4 Consensus size: 29
160732 TTAAATGAAT
160742 ATTA-AATA-ATTTTTATTATAATATATA
1 ATTATAATATATTTTTATTATAATATATA
160769 ATTATAATATATTTTTATTATAATATATA
1 ATTATAATATATTTTTATTATAATATATA
*
160798 ATTATTATATAT
1 ATTATAATATAT
160810 AATATGATAA
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
27 4 0.11
28 4 0.11
29 30 0.79
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (29 bp):
ATTATAATATATTTTTATTATAATATATA
Left flanking sequence: Indices 160242 -- 160741
TATTAAAAATTATTTATATATATTTTTAATTTATATATATTTATTTTTAATTTATATATATATAT
ATATATTTTTCTATTTTTCTATTTATTAATAATTATTTAAATAACTATTTCTTAATTTTATTAAT
ATTTAGTAATTTTATCAATAATTTTATTAATTATTATAATTTTTTTTTTTTATTTTAATTATTAT
ATTTTATTTTAATTATTATATATTATTTTATATATTTATATATTATTTTATATATATTATTATTA
TATATATATATATTAATATATATATTATATATTATTTTAATTTATTTTAATTATATTTATTTATA
TATATTATTATTGTATATATATATATTGTATATATATATTAGAGTATATATATATATTAGATTAT
ATATTAGATTATTTAAATTATATTTATTTATAATTTAAATTATATTTATTTATATAAATATTTAT
ATAAATAAATATATTATAAATAAATATATTAAATATTAAATGAAT
Right flanking sequence: Indices 160810 -- 161309
AATATGATAAACTATAATATGATAAACAATAAACTAACCAATAAACTAAACAATAAACAAAAAAA
ACTAAACAAAAAAAACTAGAACTTTCCTTACGTCTAAAGGGAGTCAGATTATTCCACCGTTTGAT
TTTTTATTTGTTGCACAAAAAAACTTTTTGAATTATTAGTAGAAAGAGATTTTGCTAACGAAAAA
GCTTTCAAGGCTGCCCAATATCCCTTTCTTTTCCAAATATTTTTTCGAATACGCTTTTTGGATAT
AGAAGTACGCTTTTTTGGAACTGCCATTTCATTTCAAGAATGAAGAAATTATTTCTTATAGTTGG
ATGTGAAAGACATCTATTTTTCAAAAAAAAATTGTTCTTTAGTATTTTATTCATTATGTATCGAT
TTTTTTTCCAAAGTCTATTCAGTTTAAAAGTCTATTCTGTTTATAAAAACGTCTGTCTGCTTACA
TTTTGATTTCTATTTCTTTTTTTTTTCCTCCTATTATATTTATAC
Found at i:160788 original size:16 final size:16
Alignment explanation
Indices: 160741--160810 Score: 71
Period size: 16 Copynumber: 4.8 Consensus size: 16
160731 ATTAAATGAA
160741 TATTA-AATA-ATTTT
1 TATTATAATATATTTT
160755 TATTATAATATA---T
1 TATTATAATATATTTT
*
160768 AATTATAATATATTTT
1 TATTATAATATATTTT
**
160784 TATTATAATATATAAT
1 TATTATAATATATTTT
160800 TATTAT-ATATA
1 TATTATAATATA
160811 ATATGATAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
13 12 0.26
14 5 0.11
15 9 0.19
16 21 0.45
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
TATTATAATATATTTT
Left flanking sequence: Indices 160241 -- 160740
TTATTAAAAATTATTTATATATATTTTTAATTTATATATATTTATTTTTAATTTATATATATATA
TATATATTTTTCTATTTTTCTATTTATTAATAATTATTTAAATAACTATTTCTTAATTTTATTAA
TATTTAGTAATTTTATCAATAATTTTATTAATTATTATAATTTTTTTTTTTTATTTTAATTATTA
TATTTTATTTTAATTATTATATATTATTTTATATATTTATATATTATTTTATATATATTATTATT
ATATATATATATATTAATATATATATTATATATTATTTTAATTTATTTTAATTATATTTATTTAT
ATATATTATTATTGTATATATATATATTGTATATATATATTAGAGTATATATATATATTAGATTA
TATATTAGATTATTTAAATTATATTTATTTATAATTTAAATTATATTTATTTATATAAATATTTA
TATAAATAAATATATTATAAATAAATATATTAAATATTAAATGAA
Right flanking sequence: Indices 160811 -- 161310
ATATGATAAACTATAATATGATAAACAATAAACTAACCAATAAACTAAACAATAAACAAAAAAAA
CTAAACAAAAAAAACTAGAACTTTCCTTACGTCTAAAGGGAGTCAGATTATTCCACCGTTTGATT
TTTTATTTGTTGCACAAAAAAACTTTTTGAATTATTAGTAGAAAGAGATTTTGCTAACGAAAAAG
CTTTCAAGGCTGCCCAATATCCCTTTCTTTTCCAAATATTTTTTCGAATACGCTTTTTGGATATA
GAAGTACGCTTTTTTGGAACTGCCATTTCATTTCAAGAATGAAGAAATTATTTCTTATAGTTGGA
TGTGAAAGACATCTATTTTTCAAAAAAAAATTGTTCTTTAGTATTTTATTCATTATGTATCGATT
TTTTTTCCAAAGTCTATTCAGTTTAAAAGTCTATTCTGTTTATAAAAACGTCTGTCTGCTTACAT
TTTGATTTCTATTTCTTTTTTTTTTCCTCCTATTATATTTATACA
Found at i:160825 original size:15 final size:15
Alignment explanation
Indices: 160807--160841 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
160797 AATTATTATA
160807 TATAATATGATAAAC
1 TATAATATGATAAAC
160822 TATAATATGATAAAC
1 TATAATATGATAAAC
*
160837 AATAA
1 TATAA
160842 ACTAACCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.31
Consensus pattern (15 bp):
TATAATATGATAAAC
Left flanking sequence: Indices 160307 -- 160806
ATATATTTTTCTATTTTTCTATTTATTAATAATTATTTAAATAACTATTTCTTAATTTTATTAAT
ATTTAGTAATTTTATCAATAATTTTATTAATTATTATAATTTTTTTTTTTTATTTTAATTATTAT
ATTTTATTTTAATTATTATATATTATTTTATATATTTATATATTATTTTATATATATTATTATTA
TATATATATATATTAATATATATATTATATATTATTTTAATTTATTTTAATTATATTTATTTATA
TATATTATTATTGTATATATATATATTGTATATATATATTAGAGTATATATATATATTAGATTAT
ATATTAGATTATTTAAATTATATTTATTTATAATTTAAATTATATTTATTTATATAAATATTTAT
ATAAATAAATATATTATAAATAAATATATTAAATATTAAATGAATATTAAATAATTTTTATTATA
ATATATAATTATAATATATTTTTATTATAATATATAATTATTATA
Right flanking sequence: Indices 160842 -- 161341
ACTAACCAATAAACTAAACAATAAACAAAAAAAACTAAACAAAAAAAACTAGAACTTTCCTTACG
TCTAAAGGGAGTCAGATTATTCCACCGTTTGATTTTTTATTTGTTGCACAAAAAAACTTTTTGAA
TTATTAGTAGAAAGAGATTTTGCTAACGAAAAAGCTTTCAAGGCTGCCCAATATCCCTTTCTTTT
CCAAATATTTTTTCGAATACGCTTTTTGGATATAGAAGTACGCTTTTTTGGAACTGCCATTTCAT
TTCAAGAATGAAGAAATTATTTCTTATAGTTGGATGTGAAAGACATCTATTTTTCAAAAAAAAAT
TGTTCTTTAGTATTTTATTCATTATGTATCGATTTTTTTTCCAAAGTCTATTCAGTTTAAAAGTC
TATTCTGTTTATAAAAACGTCTGTCTGCTTACATTTTGATTTCTATTTCTTTTTTTTTTCCTCCT
ATTATATTTATACATGTCATAAACTCCATCAAAGAGTTTACGAAC
Found at i:160878 original size:21 final size:23
Alignment explanation
Indices: 160832--160883 Score: 72
Period size: 21 Copynumber: 2.3 Consensus size: 23
160822 TATAATATGA
*
160832 TAAACAATAAACTAACCAATAAAC
1 TAAACAATAAACTAA-CAAAAAAC
160856 TAAACAATAAAC-AA-AAAAAAC
1 TAAACAATAAACTAACAAAAAAC
160877 TAAACAA
1 TAAACAA
160884 AAAAAACTAG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 13 0.48
23 2 0.07
24 12 0.44
ACGTcount: A:0.69, C:0.17, G:0.00, T:0.13
Consensus pattern (23 bp):
TAAACAATAAACTAACAAAAAAC
Left flanking sequence: Indices 160332 -- 160831
TTAATAATTATTTAAATAACTATTTCTTAATTTTATTAATATTTAGTAATTTTATCAATAATTTT
ATTAATTATTATAATTTTTTTTTTTTATTTTAATTATTATATTTTATTTTAATTATTATATATTA
TTTTATATATTTATATATTATTTTATATATATTATTATTATATATATATATATTAATATATATAT
TATATATTATTTTAATTTATTTTAATTATATTTATTTATATATATTATTATTGTATATATATATA
TTGTATATATATATTAGAGTATATATATATATTAGATTATATATTAGATTATTTAAATTATATTT
ATTTATAATTTAAATTATATTTATTTATATAAATATTTATATAAATAAATATATTATAAATAAAT
ATATTAAATATTAAATGAATATTAAATAATTTTTATTATAATATATAATTATAATATATTTTTAT
TATAATATATAATTATTATATATAATATGATAAACTATAATATGA
Right flanking sequence: Indices 160884 -- 161383
AAAAAACTAGAACTTTCCTTACGTCTAAAGGGAGTCAGATTATTCCACCGTTTGATTTTTTATTT
GTTGCACAAAAAAACTTTTTGAATTATTAGTAGAAAGAGATTTTGCTAACGAAAAAGCTTTCAAG
GCTGCCCAATATCCCTTTCTTTTCCAAATATTTTTTCGAATACGCTTTTTGGATATAGAAGTACG
CTTTTTTGGAACTGCCATTTCATTTCAAGAATGAAGAAATTATTTCTTATAGTTGGATGTGAAAG
ACATCTATTTTTCAAAAAAAAATTGTTCTTTAGTATTTTATTCATTATGTATCGATTTTTTTTCC
AAAGTCTATTCAGTTTAAAAGTCTATTCTGTTTATAAAAACGTCTGTCTGCTTACATTTTGATTT
CTATTTCTTTTTTTTTTCCTCCTATTATATTTATACATGTCATAAACTCCATCAAAGAGTTTACG
AACTTAAATCCTATTTATCCTAATAAAAAAATTTTAACCTTTTTT
Found at i:160887 original size:12 final size:12
Alignment explanation
Indices: 160832--160883 Score: 74
Period size: 12 Copynumber: 4.6 Consensus size: 12
160822 TATAATATGA
160832 TAAACAATAAAC
1 TAAACAATAAAC
*
160844 TAACCAATAAAC
1 TAAACAATAAAC
160856 TAAACAATAAAC
1 TAAACAATAAAC
160868 -AAA-AA-AAAC
1 TAAACAATAAAC
160877 TAAACAA
1 TAAACAA
160884 AAAAAACTAG
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
9 4 0.11
10 5 0.14
11 5 0.14
12 22 0.61
ACGTcount: A:0.69, C:0.17, G:0.00, T:0.13
Consensus pattern (12 bp):
TAAACAATAAAC
Left flanking sequence: Indices 160332 -- 160831
TTAATAATTATTTAAATAACTATTTCTTAATTTTATTAATATTTAGTAATTTTATCAATAATTTT
ATTAATTATTATAATTTTTTTTTTTTATTTTAATTATTATATTTTATTTTAATTATTATATATTA
TTTTATATATTTATATATTATTTTATATATATTATTATTATATATATATATATTAATATATATAT
TATATATTATTTTAATTTATTTTAATTATATTTATTTATATATATTATTATTGTATATATATATA
TTGTATATATATATTAGAGTATATATATATATTAGATTATATATTAGATTATTTAAATTATATTT
ATTTATAATTTAAATTATATTTATTTATATAAATATTTATATAAATAAATATATTATAAATAAAT
ATATTAAATATTAAATGAATATTAAATAATTTTTATTATAATATATAATTATAATATATTTTTAT
TATAATATATAATTATTATATATAATATGATAAACTATAATATGA
Right flanking sequence: Indices 160884 -- 161383
AAAAAACTAGAACTTTCCTTACGTCTAAAGGGAGTCAGATTATTCCACCGTTTGATTTTTTATTT
GTTGCACAAAAAAACTTTTTGAATTATTAGTAGAAAGAGATTTTGCTAACGAAAAAGCTTTCAAG
GCTGCCCAATATCCCTTTCTTTTCCAAATATTTTTTCGAATACGCTTTTTGGATATAGAAGTACG
CTTTTTTGGAACTGCCATTTCATTTCAAGAATGAAGAAATTATTTCTTATAGTTGGATGTGAAAG
ACATCTATTTTTCAAAAAAAAATTGTTCTTTAGTATTTTATTCATTATGTATCGATTTTTTTTCC
AAAGTCTATTCAGTTTAAAAGTCTATTCTGTTTATAAAAACGTCTGTCTGCTTACATTTTGATTT
CTATTTCTTTTTTTTTTCCTCCTATTATATTTATACATGTCATAAACTCCATCAAAGAGTTTACG
AACTTAAATCCTATTTATCCTAATAAAAAAATTTTAACCTTTTTT
Found at i:160887 original size:13 final size:14
Alignment explanation
Indices: 160863--160892 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
160853 AACTAAACAA
160863 TAAACAAAAAAAAC
1 TAAACAAAAAAAAC
160877 TAAACAAAAAAAAC
1 TAAACAAAAAAAAC
160891 TA
1 TA
160893 GAACTTTCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.77, C:0.13, G:0.00, T:0.10
Consensus pattern (14 bp):
TAAACAAAAAAAAC
Left flanking sequence: Indices 160363 -- 160862
TTTATTAATATTTAGTAATTTTATCAATAATTTTATTAATTATTATAATTTTTTTTTTTTATTTT
AATTATTATATTTTATTTTAATTATTATATATTATTTTATATATTTATATATTATTTTATATATA
TTATTATTATATATATATATATTAATATATATATTATATATTATTTTAATTTATTTTAATTATAT
TTATTTATATATATTATTATTGTATATATATATATTGTATATATATATTAGAGTATATATATATA
TTAGATTATATATTAGATTATTTAAATTATATTTATTTATAATTTAAATTATATTTATTTATATA
AATATTTATATAAATAAATATATTATAAATAAATATATTAAATATTAAATGAATATTAAATAATT
TTTATTATAATATATAATTATAATATATTTTTATTATAATATATAATTATTATATATAATATGAT
AAACTATAATATGATAAACAATAAACTAACCAATAAACTAAACAA
Right flanking sequence: Indices 160893 -- 161392
GAACTTTCCTTACGTCTAAAGGGAGTCAGATTATTCCACCGTTTGATTTTTTATTTGTTGCACAA
AAAAACTTTTTGAATTATTAGTAGAAAGAGATTTTGCTAACGAAAAAGCTTTCAAGGCTGCCCAA
TATCCCTTTCTTTTCCAAATATTTTTTCGAATACGCTTTTTGGATATAGAAGTACGCTTTTTTGG
AACTGCCATTTCATTTCAAGAATGAAGAAATTATTTCTTATAGTTGGATGTGAAAGACATCTATT
TTTCAAAAAAAAATTGTTCTTTAGTATTTTATTCATTATGTATCGATTTTTTTTCCAAAGTCTAT
TCAGTTTAAAAGTCTATTCTGTTTATAAAAACGTCTGTCTGCTTACATTTTGATTTCTATTTCTT
TTTTTTTTCCTCCTATTATATTTATACATGTCATAAACTCCATCAAAGAGTTTACGAACTTAAAT
CCTATTTATCCTAATAAAAAAATTTTAACCTTTTTTTCGAGTAAG
Found at i:161231 original size:17 final size:17
Alignment explanation
Indices: 161209--161242 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
161199 TTTTTTTTCC
161209 AAAGTCTATTCAGTTTA
1 AAAGTCTATTCAGTTTA
*
161226 AAAGTCTATTCTGTTTA
1 AAAGTCTATTCAGTTTA
161243 TAAAAACGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.44
Consensus pattern (17 bp):
AAAGTCTATTCAGTTTA
Left flanking sequence: Indices 160709 -- 161208
ATTATAAATAAATATATTAAATATTAAATGAATATTAAATAATTTTTATTATAATATATAATTAT
AATATATTTTTATTATAATATATAATTATTATATATAATATGATAAACTATAATATGATAAACAA
TAAACTAACCAATAAACTAAACAATAAACAAAAAAAACTAAACAAAAAAAACTAGAACTTTCCTT
ACGTCTAAAGGGAGTCAGATTATTCCACCGTTTGATTTTTTATTTGTTGCACAAAAAAACTTTTT
GAATTATTAGTAGAAAGAGATTTTGCTAACGAAAAAGCTTTCAAGGCTGCCCAATATCCCTTTCT
TTTCCAAATATTTTTTCGAATACGCTTTTTGGATATAGAAGTACGCTTTTTTGGAACTGCCATTT
CATTTCAAGAATGAAGAAATTATTTCTTATAGTTGGATGTGAAAGACATCTATTTTTCAAAAAAA
AATTGTTCTTTAGTATTTTATTCATTATGTATCGATTTTTTTTCC
Right flanking sequence: Indices 161243 -- 161742
TAAAAACGTCTGTCTGCTTACATTTTGATTTCTATTTCTTTTTTTTTTCCTCCTATTATATTTAT
ACATGTCATAAACTCCATCAAAGAGTTTACGAACTTAAATCCTATTTATCCTAATAAAAAAATTT
TAACCTTTTTTTCGAGTAAGTAGTCAAGCTCCAAGAACAAGTAGACCTAATTGAAATTCCATTTT
CAAACTCAAATGAAACTATTAATGAATTTGTTAAAAAAGAAAAATATAGGATTTATAAAGGATAT
CCTATATAAAAAATAAAAAGAAAAAAGTTTACTAATTTTTTCTTTTTATCCTATGGAAAGGTCAA
ATGTCAAATCAAATATCATAGTATTTTTTATAAACATAATGAATACAAGACCATAAAGCAATCCC
AAAATGTACTAATTAATGATTCGGAATAAAACAATTAAAAAAAAAATTATCTTTTTCTTATCAAA
AATCCAATACTAGTTTTGCTATAATTCTTTATCCTTTTTCTATGT
Found at i:161777 original size:21 final size:21
Alignment explanation
Indices: 161734--161796 Score: 94
Period size: 19 Copynumber: 3.0 Consensus size: 21
161724 CTTTATCCTT
161734 TTTCTATGTATTTTTTCT-T-
1 TTTCTATGTATTTTTTCTATG
161753 TTTCTATGTATTTTTTCTATG
1 TTTCTATGTATTTTTTCTATG
*
161774 TTTCTATGTATTATATTCTATG
1 TTTCTATGTATT-TTTTCTATG
161796 T
1 T
161797 ATTATATATT
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
19 18 0.45
20 1 0.03
21 12 0.30
22 9 0.22
ACGTcount: A:0.16, C:0.10, G:0.08, T:0.67
Consensus pattern (21 bp):
TTTCTATGTATTTTTTCTATG
Left flanking sequence: Indices 161234 -- 161733
TTCTGTTTATAAAAACGTCTGTCTGCTTACATTTTGATTTCTATTTCTTTTTTTTTTCCTCCTAT
TATATTTATACATGTCATAAACTCCATCAAAGAGTTTACGAACTTAAATCCTATTTATCCTAATA
AAAAAATTTTAACCTTTTTTTCGAGTAAGTAGTCAAGCTCCAAGAACAAGTAGACCTAATTGAAA
TTCCATTTTCAAACTCAAATGAAACTATTAATGAATTTGTTAAAAAAGAAAAATATAGGATTTAT
AAAGGATATCCTATATAAAAAATAAAAAGAAAAAAGTTTACTAATTTTTTCTTTTTATCCTATGG
AAAGGTCAAATGTCAAATCAAATATCATAGTATTTTTTATAAACATAATGAATACAAGACCATAA
AGCAATCCCAAAATGTACTAATTAATGATTCGGAATAAAACAATTAAAAAAAAAATTATCTTTTT
CTTATCAAAAATCCAATACTAGTTTTGCTATAATTCTTTATCCTT
Right flanking sequence: Indices 161797 -- 162296
ATTATATATTATATATATATATATATTATATATAAATTATATATATATATTATTAATTATATATA
TATATTATTATATATAGAAATTATAGAAATTATATATAGAAATTATAGAAATTAATATAAATTAT
AGAAATTAATATAAATTATATAAAAATTATTATATAAAAATTATATAATATAAATTATATTAATT
TTTGCAATCTATAAATTGAAATTTTCATTTTCTTTAGAATCAATATTTTTTTCCCTAGTATTTTG
GTTATATCATTTGAGCACTTCTGACTTCTTGGTTTGAATATGTGAAGTATTTGAAAAATATTTAG
GATAATTAAGAATAGAAAAGTGTATTTAAGTTTTGTATCTTTCTTTTTTATTATTCTTTTTTTTT
TTTTATTAACTGACTCCTTGAAATTTTTAAAATTGATAAATTAAAAAGAAAAAAGCCGATCAATC
AGAAACAAGAAACAATTAATTATTAATTAAAACTAATAATATTTT
Found at i:161794 original size:14 final size:14
Alignment explanation
Indices: 161775--161803 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
161765 TTTTCTATGT
161775 TTCTATGTATTATA
1 TTCTATGTATTATA
161789 TTCTATGTATTATA
1 TTCTATGTATTATA
161803 T
1 T
161804 ATTATATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.07, G:0.07, T:0.59
Consensus pattern (14 bp):
TTCTATGTATTATA
Left flanking sequence: Indices 161275 -- 161774
TATTTCTTTTTTTTTTCCTCCTATTATATTTATACATGTCATAAACTCCATCAAAGAGTTTACGA
ACTTAAATCCTATTTATCCTAATAAAAAAATTTTAACCTTTTTTTCGAGTAAGTAGTCAAGCTCC
AAGAACAAGTAGACCTAATTGAAATTCCATTTTCAAACTCAAATGAAACTATTAATGAATTTGTT
AAAAAAGAAAAATATAGGATTTATAAAGGATATCCTATATAAAAAATAAAAAGAAAAAAGTTTAC
TAATTTTTTCTTTTTATCCTATGGAAAGGTCAAATGTCAAATCAAATATCATAGTATTTTTTATA
AACATAATGAATACAAGACCATAAAGCAATCCCAAAATGTACTAATTAATGATTCGGAATAAAAC
AATTAAAAAAAAAATTATCTTTTTCTTATCAAAAATCCAATACTAGTTTTGCTATAATTCTTTAT
CCTTTTTCTATGTATTTTTTCTTTTTCTATGTATTTTTTCTATGT
Right flanking sequence: Indices 161804 -- 162303
ATTATATATATATATATATTATATATAAATTATATATATATATTATTAATTATATATATATATTA
TTATATATAGAAATTATAGAAATTATATATAGAAATTATAGAAATTAATATAAATTATAGAAATT
AATATAAATTATATAAAAATTATTATATAAAAATTATATAATATAAATTATATTAATTTTTGCAA
TCTATAAATTGAAATTTTCATTTTCTTTAGAATCAATATTTTTTTCCCTAGTATTTTGGTTATAT
CATTTGAGCACTTCTGACTTCTTGGTTTGAATATGTGAAGTATTTGAAAAATATTTAGGATAATT
AAGAATAGAAAAGTGTATTTAAGTTTTGTATCTTTCTTTTTTATTATTCTTTTTTTTTTTTTATT
AACTGACTCCTTGAAATTTTTAAAATTGATAAATTAAAAAGAAAAAAGCCGATCAATCAGAAACA
AGAAACAATTAATTATTAATTAAAACTAATAATATTTTTTTATGG
Found at i:161808 original size:21 final size:22
Alignment explanation
Indices: 161767--161810 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
161757 TATGTATTTT
* *
161767 TTCTATGTTTCTATGTATTATA
1 TTCTATGTATCTATATATTATA
161789 TTCTATGTAT-TATATATTATA
1 TTCTATGTATCTATATATTATA
161810 T
1 T
161811 ATATATATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 11 0.55
22 9 0.45
ACGTcount: A:0.27, C:0.07, G:0.07, T:0.59
Consensus pattern (22 bp):
TTCTATGTATCTATATATTATA
Left flanking sequence: Indices 161267 -- 161766
TTGATTTCTATTTCTTTTTTTTTTCCTCCTATTATATTTATACATGTCATAAACTCCATCAAAGA
GTTTACGAACTTAAATCCTATTTATCCTAATAAAAAAATTTTAACCTTTTTTTCGAGTAAGTAGT
CAAGCTCCAAGAACAAGTAGACCTAATTGAAATTCCATTTTCAAACTCAAATGAAACTATTAATG
AATTTGTTAAAAAAGAAAAATATAGGATTTATAAAGGATATCCTATATAAAAAATAAAAAGAAAA
AAGTTTACTAATTTTTTCTTTTTATCCTATGGAAAGGTCAAATGTCAAATCAAATATCATAGTAT
TTTTTATAAACATAATGAATACAAGACCATAAAGCAATCCCAAAATGTACTAATTAATGATTCGG
AATAAAACAATTAAAAAAAAAATTATCTTTTTCTTATCAAAAATCCAATACTAGTTTTGCTATAA
TTCTTTATCCTTTTTCTATGTATTTTTTCTTTTTCTATGTATTTT
Right flanking sequence: Indices 161811 -- 162310
ATATATATATATTATATATAAATTATATATATATATTATTAATTATATATATATATTATTATATA
TAGAAATTATAGAAATTATATATAGAAATTATAGAAATTAATATAAATTATAGAAATTAATATAA
ATTATATAAAAATTATTATATAAAAATTATATAATATAAATTATATTAATTTTTGCAATCTATAA
ATTGAAATTTTCATTTTCTTTAGAATCAATATTTTTTTCCCTAGTATTTTGGTTATATCATTTGA
GCACTTCTGACTTCTTGGTTTGAATATGTGAAGTATTTGAAAAATATTTAGGATAATTAAGAATA
GAAAAGTGTATTTAAGTTTTGTATCTTTCTTTTTTATTATTCTTTTTTTTTTTTTATTAACTGAC
TCCTTGAAATTTTTAAAATTGATAAATTAAAAAGAAAAAAGCCGATCAATCAGAAACAAGAAACA
ATTAATTATTAATTAAAACTAATAATATTTTTTTATGGAACATAC
Found at i:161811 original size:2 final size:2
Alignment explanation
Indices: 161799--161877 Score: 86
Period size: 2 Copynumber: 44.0 Consensus size: 2
161789 TTCTATGTAT
*
161799 TA TA TA T- TA TA TA TA TA TA TA TA T- TA TA TA TA AA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
161838 TA TA TA TA T- TA T- TA -A T- TA TA TA TA TA TA T- TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
161874 TA TA
1 TA TA
161878 GAAATTATAG
Statistics
Matches: 66, Mismatches: 2, Indels: 18
0.77 0.02 0.21
Matches are distributed among these distances:
1 9 0.14
2 57 0.86
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Left flanking sequence: Indices 161299 -- 161798
TATATTTATACATGTCATAAACTCCATCAAAGAGTTTACGAACTTAAATCCTATTTATCCTAATA
AAAAAATTTTAACCTTTTTTTCGAGTAAGTAGTCAAGCTCCAAGAACAAGTAGACCTAATTGAAA
TTCCATTTTCAAACTCAAATGAAACTATTAATGAATTTGTTAAAAAAGAAAAATATAGGATTTAT
AAAGGATATCCTATATAAAAAATAAAAAGAAAAAAGTTTACTAATTTTTTCTTTTTATCCTATGG
AAAGGTCAAATGTCAAATCAAATATCATAGTATTTTTTATAAACATAATGAATACAAGACCATAA
AGCAATCCCAAAATGTACTAATTAATGATTCGGAATAAAACAATTAAAAAAAAAATTATCTTTTT
CTTATCAAAAATCCAATACTAGTTTTGCTATAATTCTTTATCCTTTTTCTATGTATTTTTTCTTT
TTCTATGTATTTTTTCTATGTTTCTATGTATTATATTCTATGTAT
Right flanking sequence: Indices 161878 -- 162377
GAAATTATAGAAATTATATATAGAAATTATAGAAATTAATATAAATTATAGAAATTAATATAAAT
TATATAAAAATTATTATATAAAAATTATATAATATAAATTATATTAATTTTTGCAATCTATAAAT
TGAAATTTTCATTTTCTTTAGAATCAATATTTTTTTCCCTAGTATTTTGGTTATATCATTTGAGC
ACTTCTGACTTCTTGGTTTGAATATGTGAAGTATTTGAAAAATATTTAGGATAATTAAGAATAGA
AAAGTGTATTTAAGTTTTGTATCTTTCTTTTTTATTATTCTTTTTTTTTTTTTATTAACTGACTC
CTTGAAATTTTTAAAATTGATAAATTAAAAAGAAAAAAGCCGATCAATCAGAAACAAGAAACAAT
TAATTATTAATTAAAACTAATAATATTTTTTTATGGAACATACATATCAATATTCATGGATCATA
TCTTTTGTTACACTTCCAGTCCCTATAGTAATAGGAGCGGGACTC
Found at i:161827 original size:24 final size:24
Alignment explanation
Indices: 161796--161876 Score: 114
Period size: 24 Copynumber: 3.4 Consensus size: 24
161786 ATATTCTATG
161796 TATTATATATTATATATATATATA
1 TATTATATATTATATATATATATA
*
161820 TATTATATA-TAAATTATATATATA
1 TATTATATATTATA-TATATATATA
161844 TATTAT-TAATTATATATATATAT-
1 TATTATAT-ATTATATATATATATA
161867 TATTATATAT
1 TATTATATAT
161877 AGAAATTATA
Statistics
Matches: 51, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
23 12 0.24
24 36 0.71
25 3 0.06
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (24 bp):
TATTATATATTATATATATATATA
Left flanking sequence: Indices 161296 -- 161795
TATTATATTTATACATGTCATAAACTCCATCAAAGAGTTTACGAACTTAAATCCTATTTATCCTA
ATAAAAAAATTTTAACCTTTTTTTCGAGTAAGTAGTCAAGCTCCAAGAACAAGTAGACCTAATTG
AAATTCCATTTTCAAACTCAAATGAAACTATTAATGAATTTGTTAAAAAAGAAAAATATAGGATT
TATAAAGGATATCCTATATAAAAAATAAAAAGAAAAAAGTTTACTAATTTTTTCTTTTTATCCTA
TGGAAAGGTCAAATGTCAAATCAAATATCATAGTATTTTTTATAAACATAATGAATACAAGACCA
TAAAGCAATCCCAAAATGTACTAATTAATGATTCGGAATAAAACAATTAAAAAAAAAATTATCTT
TTTCTTATCAAAAATCCAATACTAGTTTTGCTATAATTCTTTATCCTTTTTCTATGTATTTTTTC
TTTTTCTATGTATTTTTTCTATGTTTCTATGTATTATATTCTATG
Right flanking sequence: Indices 161877 -- 162376
AGAAATTATAGAAATTATATATAGAAATTATAGAAATTAATATAAATTATAGAAATTAATATAAA
TTATATAAAAATTATTATATAAAAATTATATAATATAAATTATATTAATTTTTGCAATCTATAAA
TTGAAATTTTCATTTTCTTTAGAATCAATATTTTTTTCCCTAGTATTTTGGTTATATCATTTGAG
CACTTCTGACTTCTTGGTTTGAATATGTGAAGTATTTGAAAAATATTTAGGATAATTAAGAATAG
AAAAGTGTATTTAAGTTTTGTATCTTTCTTTTTTATTATTCTTTTTTTTTTTTTATTAACTGACT
CCTTGAAATTTTTAAAATTGATAAATTAAAAAGAAAAAAGCCGATCAATCAGAAACAAGAAACAA
TTAATTATTAATTAAAACTAATAATATTTTTTTATGGAACATACATATCAATATTCATGGATCAT
ATCTTTTGTTACACTTCCAGTCCCTATAGTAATAGGAGCGGGACT
Found at i:161835 original size:28 final size:28
Alignment explanation
Indices: 161799--161986 Score: 107
Period size: 25 Copynumber: 7.0 Consensus size: 28
161789 TTCTATGTAT
*
161799 TATATATTATATATATATATATATTATA
1 TATAAATTATATATATATATATATTATA
161827 TATAAATTATATATATATATTATTAATTATA
1 TATAAATTATATATATATA-TA-T-ATTATA
* *
161858 TATATATATTAT-TATATATAGA-AAT-TA
1 TATA-A-ATTATATATATATATATATTATA
* * * *
161885 TAGAAATTATATATAGAAAT-TA-TAGA
1 TATAAATTATATATATATATATATTATA
* * * * *
161911 AATTAA-TATAAAT-TATAGAAATTA-A
1 TATAAATTATATATATATATATATTATA
*
161936 TATAAATTATATA-A-AAAT-TATTATA
1 TATAAATTATATATATATATATATTATA
*
161961 TAAAAATTATATA-ATATA-A-ATTATA
1 TATAAATTATATATATATATATATTATA
161986 T
1 T
161987 TAATTTTTGC
Statistics
Matches: 121, Mismatches: 24, Indels: 33
0.68 0.13 0.19
Matches are distributed among these distances:
24 6 0.05
25 41 0.34
26 21 0.17
27 5 0.04
28 20 0.17
29 2 0.02
30 1 0.01
31 11 0.09
32 9 0.07
33 5 0.04
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (28 bp):
TATAAATTATATATATATATATATTATA
Left flanking sequence: Indices 161299 -- 161798
TATATTTATACATGTCATAAACTCCATCAAAGAGTTTACGAACTTAAATCCTATTTATCCTAATA
AAAAAATTTTAACCTTTTTTTCGAGTAAGTAGTCAAGCTCCAAGAACAAGTAGACCTAATTGAAA
TTCCATTTTCAAACTCAAATGAAACTATTAATGAATTTGTTAAAAAAGAAAAATATAGGATTTAT
AAAGGATATCCTATATAAAAAATAAAAAGAAAAAAGTTTACTAATTTTTTCTTTTTATCCTATGG
AAAGGTCAAATGTCAAATCAAATATCATAGTATTTTTTATAAACATAATGAATACAAGACCATAA
AGCAATCCCAAAATGTACTAATTAATGATTCGGAATAAAACAATTAAAAAAAAAATTATCTTTTT
CTTATCAAAAATCCAATACTAGTTTTGCTATAATTCTTTATCCTTTTTCTATGTATTTTTTCTTT
TTCTATGTATTTTTTCTATGTTTCTATGTATTATATTCTATGTAT
Right flanking sequence: Indices 161987 -- 162486
TAATTTTTGCAATCTATAAATTGAAATTTTCATTTTCTTTAGAATCAATATTTTTTTCCCTAGTA
TTTTGGTTATATCATTTGAGCACTTCTGACTTCTTGGTTTGAATATGTGAAGTATTTGAAAAATA
TTTAGGATAATTAAGAATAGAAAAGTGTATTTAAGTTTTGTATCTTTCTTTTTTATTATTCTTTT
TTTTTTTTTATTAACTGACTCCTTGAAATTTTTAAAATTGATAAATTAAAAAGAAAAAAGCCGAT
CAATCAGAAACAAGAAACAATTAATTATTAATTAAAACTAATAATATTTTTTTATGGAACATACA
TATCAATATTCATGGATCATATCTTTTGTTACACTTCCAGTCCCTATAGTAATAGGAGCGGGACT
CCTACTTTTTCCGACAGCAACAAAAAAACTTCGTCGTATGTGGGCTTTTCCAAGTGTTTTATTGT
TAAGTATAGTTATGATTTTTTCGATAGATTTGTCTATTCAACAAA
Found at i:161837 original size:22 final size:22
Alignment explanation
Indices: 161796--161978 Score: 107
Period size: 22 Copynumber: 8.1 Consensus size: 22
161786 ATATTCTATG
*
161796 TATTATATATTATATATATATATA
1 TATTATATA-TAAAT-TATATATA
161820 TATTATATATAAATTATATATA
1 TATTATATATAAATTATATATA
161842 TA-TAT-TATTAATTATATATATATA
1 TATTATATA-TAA--AT-TATATATA
*
161866 TTATTATATATAGAAATTATAGA-A
1 -TATTATATAT--AAATTATATATA
*
161890 -ATTATATATAGAAATTATAGA-A
1 TATTATATAT--AAATTATATATA
*
161912 -ATTA-ATATAAATTATAGA-A
1 TATTATATATAAATTATATATA
*
161931 -ATTA-ATATAAATTATATAAAAA
1 TATTATATATAAATTATAT--ATA
*
161953 TTATTATATAAAAATTATATAATA
1 -TATTATATATAAATTATAT-ATA
161977 TA
1 TA
161979 AATTATATTA
Statistics
Matches: 139, Mismatches: 5, Indels: 31
0.79 0.03 0.18
Matches are distributed among these distances:
19 27 0.19
20 2 0.01
21 11 0.08
22 37 0.27
23 8 0.06
24 25 0.18
25 19 0.14
26 6 0.04
27 2 0.01
28 2 0.01
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (22 bp):
TATTATATATAAATTATATATA
Left flanking sequence: Indices 161296 -- 161795
TATTATATTTATACATGTCATAAACTCCATCAAAGAGTTTACGAACTTAAATCCTATTTATCCTA
ATAAAAAAATTTTAACCTTTTTTTCGAGTAAGTAGTCAAGCTCCAAGAACAAGTAGACCTAATTG
AAATTCCATTTTCAAACTCAAATGAAACTATTAATGAATTTGTTAAAAAAGAAAAATATAGGATT
TATAAAGGATATCCTATATAAAAAATAAAAAGAAAAAAGTTTACTAATTTTTTCTTTTTATCCTA
TGGAAAGGTCAAATGTCAAATCAAATATCATAGTATTTTTTATAAACATAATGAATACAAGACCA
TAAAGCAATCCCAAAATGTACTAATTAATGATTCGGAATAAAACAATTAAAAAAAAAATTATCTT
TTTCTTATCAAAAATCCAATACTAGTTTTGCTATAATTCTTTATCCTTTTTCTATGTATTTTTTC
TTTTTCTATGTATTTTTTCTATGTTTCTATGTATTATATTCTATG
Right flanking sequence: Indices 161979 -- 162478
AATTATATTAATTTTTGCAATCTATAAATTGAAATTTTCATTTTCTTTAGAATCAATATTTTTTT
CCCTAGTATTTTGGTTATATCATTTGAGCACTTCTGACTTCTTGGTTTGAATATGTGAAGTATTT
GAAAAATATTTAGGATAATTAAGAATAGAAAAGTGTATTTAAGTTTTGTATCTTTCTTTTTTATT
ATTCTTTTTTTTTTTTTATTAACTGACTCCTTGAAATTTTTAAAATTGATAAATTAAAAAGAAAA
AAGCCGATCAATCAGAAACAAGAAACAATTAATTATTAATTAAAACTAATAATATTTTTTTATGG
AACATACATATCAATATTCATGGATCATATCTTTTGTTACACTTCCAGTCCCTATAGTAATAGGA
GCGGGACTCCTACTTTTTCCGACAGCAACAAAAAAACTTCGTCGTATGTGGGCTTTTCCAAGTGT
TTTATTGTTAAGTATAGTTATGATTTTTTCGATAGATTTGTCTAT
Found at i:161888 original size:9 final size:9
Alignment explanation
Indices: 161874--161946 Score: 75
Period size: 9 Copynumber: 8.4 Consensus size: 9
161864 TATTATTATA
161874 TATAGAAAT
1 TATAGAAAT
161883 TATAGAAAT
1 TATAGAAAT
161892 TAT----A-
1 TATAGAAAT
161896 TATAGAAAT
1 TATAGAAAT
161905 TATAGAAAT
1 TATAGAAAT
*
161914 TAATATAAAT
1 T-ATAGAAAT
161924 TATAGAAAT
1 TATAGAAAT
*
161933 TAATATAAAT
1 T-ATAGAAAT
161943 TATA
1 TATA
161947 TAAAAATTAT
Statistics
Matches: 54, Mismatches: 3, Indels: 14
0.76 0.04 0.20
Matches are distributed among these distances:
4 3 0.06
5 1 0.02
8 1 0.02
9 33 0.61
10 16 0.30
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.37
Consensus pattern (9 bp):
TATAGAAAT
Left flanking sequence: Indices 161374 -- 161873
AACCTTTTTTTCGAGTAAGTAGTCAAGCTCCAAGAACAAGTAGACCTAATTGAAATTCCATTTTC
AAACTCAAATGAAACTATTAATGAATTTGTTAAAAAAGAAAAATATAGGATTTATAAAGGATATC
CTATATAAAAAATAAAAAGAAAAAAGTTTACTAATTTTTTCTTTTTATCCTATGGAAAGGTCAAA
TGTCAAATCAAATATCATAGTATTTTTTATAAACATAATGAATACAAGACCATAAAGCAATCCCA
AAATGTACTAATTAATGATTCGGAATAAAACAATTAAAAAAAAAATTATCTTTTTCTTATCAAAA
ATCCAATACTAGTTTTGCTATAATTCTTTATCCTTTTTCTATGTATTTTTTCTTTTTCTATGTAT
TTTTTCTATGTTTCTATGTATTATATTCTATGTATTATATATTATATATATATATATATTATATA
TAAATTATATATATATATTATTAATTATATATATATATTATTATA
Right flanking sequence: Indices 161947 -- 162446
TAAAAATTATTATATAAAAATTATATAATATAAATTATATTAATTTTTGCAATCTATAAATTGAA
ATTTTCATTTTCTTTAGAATCAATATTTTTTTCCCTAGTATTTTGGTTATATCATTTGAGCACTT
CTGACTTCTTGGTTTGAATATGTGAAGTATTTGAAAAATATTTAGGATAATTAAGAATAGAAAAG
TGTATTTAAGTTTTGTATCTTTCTTTTTTATTATTCTTTTTTTTTTTTTATTAACTGACTCCTTG
AAATTTTTAAAATTGATAAATTAAAAAGAAAAAAGCCGATCAATCAGAAACAAGAAACAATTAAT
TATTAATTAAAACTAATAATATTTTTTTATGGAACATACATATCAATATTCATGGATCATATCTT
TTGTTACACTTCCAGTCCCTATAGTAATAGGAGCGGGACTCCTACTTTTTCCGACAGCAACAAAA
AAACTTCGTCGTATGTGGGCTTTTCCAAGTGTTTTATTGTTAAGT
Found at i:161925 original size:19 final size:19
Alignment explanation
Indices: 161879--161946 Score: 109
Period size: 19 Copynumber: 3.4 Consensus size: 19
161869 TTATATATAG
161879 AAATTATAGAAATTATATAT
1 AAATTATAGAAATTA-ATAT
161899 AGAAATTATAGAAATTAATAT
1 --AAATTATAGAAATTAATAT
161920 AAATTATAGAAATTAATAT
1 AAATTATAGAAATTAATAT
161939 AAATTATA
1 AAATTATA
161947 TAAAAATTAT
Statistics
Matches: 46, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
19 27 0.59
21 4 0.09
22 15 0.33
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.37
Consensus pattern (19 bp):
AAATTATAGAAATTAATAT
Left flanking sequence: Indices 161379 -- 161878
TTTTTTCGAGTAAGTAGTCAAGCTCCAAGAACAAGTAGACCTAATTGAAATTCCATTTTCAAACT
CAAATGAAACTATTAATGAATTTGTTAAAAAAGAAAAATATAGGATTTATAAAGGATATCCTATA
TAAAAAATAAAAAGAAAAAAGTTTACTAATTTTTTCTTTTTATCCTATGGAAAGGTCAAATGTCA
AATCAAATATCATAGTATTTTTTATAAACATAATGAATACAAGACCATAAAGCAATCCCAAAATG
TACTAATTAATGATTCGGAATAAAACAATTAAAAAAAAAATTATCTTTTTCTTATCAAAAATCCA
ATACTAGTTTTGCTATAATTCTTTATCCTTTTTCTATGTATTTTTTCTTTTTCTATGTATTTTTT
CTATGTTTCTATGTATTATATTCTATGTATTATATATTATATATATATATATATTATATATAAAT
TATATATATATATTATTAATTATATATATATATTATTATATATAG
Right flanking sequence: Indices 161947 -- 162446
TAAAAATTATTATATAAAAATTATATAATATAAATTATATTAATTTTTGCAATCTATAAATTGAA
ATTTTCATTTTCTTTAGAATCAATATTTTTTTCCCTAGTATTTTGGTTATATCATTTGAGCACTT
CTGACTTCTTGGTTTGAATATGTGAAGTATTTGAAAAATATTTAGGATAATTAAGAATAGAAAAG
TGTATTTAAGTTTTGTATCTTTCTTTTTTATTATTCTTTTTTTTTTTTTATTAACTGACTCCTTG
AAATTTTTAAAATTGATAAATTAAAAAGAAAAAAGCCGATCAATCAGAAACAAGAAACAATTAAT
TATTAATTAAAACTAATAATATTTTTTTATGGAACATACATATCAATATTCATGGATCATATCTT
TTGTTACACTTCCAGTCCCTATAGTAATAGGAGCGGGACTCCTACTTTTTCCGACAGCAACAAAA
AAACTTCGTCGTATGTGGGCTTTTCCAAGTGTTTTATTGTTAAGT
Found at i:161947 original size:9 final size:9
Alignment explanation
Indices: 161825--161950 Score: 74
Period size: 9 Copynumber: 12.9 Consensus size: 9
161815 ATATATATTA
161825 TATATAAAT
1 TATATAAAT
*
161834 TATATATAT
1 TATATAAAT
*
161843 ATATTATTAAT
1 -TA-TATAAAT
*
161854 TATATATA-
1 TATATAAAT
*
161862 TATATTATTAT
1 TATA-TA-AAT
*
161873 ATATAGAAAT
1 -TATATAAAT
*
161883 TATAGAAATT
1 TATATAAA-T
161893 ATATATAGAAAT
1 -TATAT--AAAT
*
161905 TATAGAAAT
1 TATATAAAT
161914 TAATATAAAT
1 T-ATATAAAT
*
161924 TATAGAAAT
1 TATATAAAT
161933 TAATATAAAT
1 T-ATATAAAT
161943 TATATAAA
1 TATATAAA
161951 AATTATTATA
Statistics
Matches: 93, Mismatches: 12, Indels: 24
0.72 0.09 0.19
Matches are distributed among these distances:
8 4 0.04
9 42 0.45
10 25 0.27
11 14 0.15
12 5 0.05
13 3 0.03
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (9 bp):
TATATAAAT
Left flanking sequence: Indices 161325 -- 161824
TCAAAGAGTTTACGAACTTAAATCCTATTTATCCTAATAAAAAAATTTTAACCTTTTTTTCGAGT
AAGTAGTCAAGCTCCAAGAACAAGTAGACCTAATTGAAATTCCATTTTCAAACTCAAATGAAACT
ATTAATGAATTTGTTAAAAAAGAAAAATATAGGATTTATAAAGGATATCCTATATAAAAAATAAA
AAGAAAAAAGTTTACTAATTTTTTCTTTTTATCCTATGGAAAGGTCAAATGTCAAATCAAATATC
ATAGTATTTTTTATAAACATAATGAATACAAGACCATAAAGCAATCCCAAAATGTACTAATTAAT
GATTCGGAATAAAACAATTAAAAAAAAAATTATCTTTTTCTTATCAAAAATCCAATACTAGTTTT
GCTATAATTCTTTATCCTTTTTCTATGTATTTTTTCTTTTTCTATGTATTTTTTCTATGTTTCTA
TGTATTATATTCTATGTATTATATATTATATATATATATATATTA
Right flanking sequence: Indices 161951 -- 162450
AATTATTATATAAAAATTATATAATATAAATTATATTAATTTTTGCAATCTATAAATTGAAATTT
TCATTTTCTTTAGAATCAATATTTTTTTCCCTAGTATTTTGGTTATATCATTTGAGCACTTCTGA
CTTCTTGGTTTGAATATGTGAAGTATTTGAAAAATATTTAGGATAATTAAGAATAGAAAAGTGTA
TTTAAGTTTTGTATCTTTCTTTTTTATTATTCTTTTTTTTTTTTTATTAACTGACTCCTTGAAAT
TTTTAAAATTGATAAATTAAAAAGAAAAAAGCCGATCAATCAGAAACAAGAAACAATTAATTATT
AATTAAAACTAATAATATTTTTTTATGGAACATACATATCAATATTCATGGATCATATCTTTTGT
TACACTTCCAGTCCCTATAGTAATAGGAGCGGGACTCCTACTTTTTCCGACAGCAACAAAAAAAC
TTCGTCGTATGTGGGCTTTTCCAAGTGTTTTATTGTTAAGTATAG
Found at i:161977 original size:16 final size:14
Alignment explanation
Indices: 161941--161984 Score: 63
Period size: 14 Copynumber: 3.1 Consensus size: 14
161931 ATTAATATAA
161941 ATTATATAAAAATT
1 ATTATATAAAAATT
161955 ATTATATAAAAATT
1 ATTATATAAAAATT
*
161969 A-TATAATATAAATT
1 ATTAT-ATAAAAATT
161983 AT
1 AT
161985 ATTAATTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
13 3 0.11
14 24 0.89
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
ATTATATAAAAATT
Left flanking sequence: Indices 161441 -- 161940
ACTCAAATGAAACTATTAATGAATTTGTTAAAAAAGAAAAATATAGGATTTATAAAGGATATCCT
ATATAAAAAATAAAAAGAAAAAAGTTTACTAATTTTTTCTTTTTATCCTATGGAAAGGTCAAATG
TCAAATCAAATATCATAGTATTTTTTATAAACATAATGAATACAAGACCATAAAGCAATCCCAAA
ATGTACTAATTAATGATTCGGAATAAAACAATTAAAAAAAAAATTATCTTTTTCTTATCAAAAAT
CCAATACTAGTTTTGCTATAATTCTTTATCCTTTTTCTATGTATTTTTTCTTTTTCTATGTATTT
TTTCTATGTTTCTATGTATTATATTCTATGTATTATATATTATATATATATATATATTATATATA
AATTATATATATATATTATTAATTATATATATATATTATTATATATAGAAATTATAGAAATTATA
TATAGAAATTATAGAAATTAATATAAATTATAGAAATTAATATAA
Right flanking sequence: Indices 161985 -- 162484
ATTAATTTTTGCAATCTATAAATTGAAATTTTCATTTTCTTTAGAATCAATATTTTTTTCCCTAG
TATTTTGGTTATATCATTTGAGCACTTCTGACTTCTTGGTTTGAATATGTGAAGTATTTGAAAAA
TATTTAGGATAATTAAGAATAGAAAAGTGTATTTAAGTTTTGTATCTTTCTTTTTTATTATTCTT
TTTTTTTTTTTATTAACTGACTCCTTGAAATTTTTAAAATTGATAAATTAAAAAGAAAAAAGCCG
ATCAATCAGAAACAAGAAACAATTAATTATTAATTAAAACTAATAATATTTTTTTATGGAACATA
CATATCAATATTCATGGATCATATCTTTTGTTACACTTCCAGTCCCTATAGTAATAGGAGCGGGA
CTCCTACTTTTTCCGACAGCAACAAAAAAACTTCGTCGTATGTGGGCTTTTCCAAGTGTTTTATT
GTTAAGTATAGTTATGATTTTTTCGATAGATTTGTCTATTCAACA
Found at i:162185 original size:17 final size:17
Alignment explanation
Indices: 162159--162193 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
162149 AAGTTTTGTA
162159 TCTTTCTTTTTTATTAT
1 TCTTTCTTTTTTATTAT
* *
162176 TCTTTTTTTTTTTTTAT
1 TCTTTCTTTTTTATTAT
162193 T
1 T
162194 AACTGACTCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.09, C:0.09, G:0.00, T:0.83
Consensus pattern (17 bp):
TCTTTCTTTTTTATTAT
Left flanking sequence: Indices 161659 -- 162158
TAAAACAATTAAAAAAAAAATTATCTTTTTCTTATCAAAAATCCAATACTAGTTTTGCTATAATT
CTTTATCCTTTTTCTATGTATTTTTTCTTTTTCTATGTATTTTTTCTATGTTTCTATGTATTATA
TTCTATGTATTATATATTATATATATATATATATTATATATAAATTATATATATATATTATTAAT
TATATATATATATTATTATATATAGAAATTATAGAAATTATATATAGAAATTATAGAAATTAATA
TAAATTATAGAAATTAATATAAATTATATAAAAATTATTATATAAAAATTATATAATATAAATTA
TATTAATTTTTGCAATCTATAAATTGAAATTTTCATTTTCTTTAGAATCAATATTTTTTTCCCTA
GTATTTTGGTTATATCATTTGAGCACTTCTGACTTCTTGGTTTGAATATGTGAAGTATTTGAAAA
ATATTTAGGATAATTAAGAATAGAAAAGTGTATTTAAGTTTTGTA
Right flanking sequence: Indices 162194 -- 162693
AACTGACTCCTTGAAATTTTTAAAATTGATAAATTAAAAAGAAAAAAGCCGATCAATCAGAAACA
AGAAACAATTAATTATTAATTAAAACTAATAATATTTTTTTATGGAACATACATATCAATATTCA
TGGATCATATCTTTTGTTACACTTCCAGTCCCTATAGTAATAGGAGCGGGACTCCTACTTTTTCC
GACAGCAACAAAAAAACTTCGTCGTATGTGGGCTTTTCCAAGTGTTTTATTGTTAAGTATAGTTA
TGATTTTTTCGATAGATTTGTCTATTCAACAAATCAATAGCAGTTCTATCTATCAATATGTATGG
TCTTGGACCATCAATAATGATTTTTCTTTAGAGTTCGGACACTTGATCGACCCACTTACATCTAT
TTTGTCAATATTAATTACTACAGTTGGAACTTTGGTTCTTCTTTATAGTGACAATTATATGGCTC
ATGATCAAAGTTATTTGAGATTTTTTGCTTATATGATTTTTTTCA
Found at i:164525 original size:14 final size:14
Alignment explanation
Indices: 164506--164537 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
164496 TATGTGGTAA
164506 TCTTTTTATTAATT
1 TCTTTTTATTAATT
164520 TCTTTTTATTAATT
1 TCTTTTTATTAATT
164534 TCTT
1 TCTT
164538 ACTATTTCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.19, C:0.09, G:0.00, T:0.72
Consensus pattern (14 bp):
TCTTTTTATTAATT
Left flanking sequence: Indices 164006 -- 164505
ATTTAATCAAGAAGGAATTGATTTGGACATATTATCTAAACTGTTAACTCCGTTTTTAAATCTTC
TGCATCAAAATAATACAAATAATTATGGGGATTGGTATGACTTTTCAACAAACGCGACTGTTTCC
GTCAGTATAGCATCTTTCGGAATATTTTTAGCATCTTTGTTATATAAGCCCGTTTATTCATCATT
AAAAAATTTGAACTTCTTGAATTTCCTTACTAAAAAAGGTCCTAAACGAATTGTTTGGGACAAAA
TAATAAATGTGATATATGATTGGTCTTATAATCGTGGTTACATAGATGTTTTTTATGCAATATCT
TTAACTGAAGGTATACGAAGATTAGCTGAATTAAATTATTTTTTTGATAGAAGAGGAATTGATGG
AATTCCAAATGGAGTCGGTGTTACAAGTCTTTTTATCGGGGAAGGTCTAAAATATGTAGGAGGGG
GGCGCATTTCTGCTTACCTTTTATTGTTTTTATTTTATGTGGTAA
Right flanking sequence: Indices 164538 -- 165037
ACTATTTCCAATGATTGGAGAGTTTGTCTGTTTTTTCAGTTGTGACTAGGGAAGTTTTTCTTTGT
ATCATTTCCAAAAAAGTTGATAAACTGGGTGGATATGTAAAAGATATTCTTTCTTTTCCATCGCT
TTGACATGTATAAAAAAAATATTGTGACATCTCTTTTTTTACAGCATTCTCAAATTGATTTTTTT
TTATATATCGAAATGGACGATTCCAAGATTTAGAGTCGAAAAAAATAGTTACAAGAGGTTTTTCA
AACCAGAAGAGATCTTTATCTTTTTTATCTATCAATATTTCTAACTTCGAATTTTCTTGATTCCC
ATCCAGATAAAAAGTTTCATAAACTGGTCTATTTTTATAGTATGTCTCTTTAAAAAAGTGAAAAT
GGAATTCATCCTTTGTTTTTTCCTTTCCATTCACTCGGATCTCTTCCGTTTCGTCGATTTTGTCC
GGATCCTCCTTTTCTTCCAAAAAAAGGGAAGAAGCAGGATCTTCT
Found at i:190230 original size:18 final size:19
Alignment explanation
Indices: 190209--190251 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
190199 CAACCTTGTT
190209 GACTATGACAACA-A-TCGC
1 GACTATGA-AACAGACTCGC
190227 GACTAT-AAACAGACTCGC
1 GACTATGAAACAGACTCGC
190245 GACTATG
1 GACTATG
190252 GCAGGGCGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 4 0.18
17 2 0.09
18 16 0.73
ACGTcount: A:0.37, C:0.26, G:0.19, T:0.19
Consensus pattern (19 bp):
GACTATGAAACAGACTCGC
Left flanking sequence: Indices 189709 -- 190208
TACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGA
GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTAC
CTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCAACTAACACTTCT
CCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGT
CCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATAGGA
GAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAG
CGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTAGGGTACGGTCAGTTCACCGGGAGGAT
CGCCCTCCCAATTCGAAGTTTTTTCCTGGAAGTTTCAACCTTGTT
Right flanking sequence: Indices 190252 -- 190751
GCAGGGCGGTACGCTCTGCTCTCTCGCGACCCCTACTCTAATCAAAAGACTAAAGGCCCCTACTG
AAGATTCAAAAGGCGAGCACTGAAATGAGAAAGGCTTGTAGACTCGTGACACATTCTAAAACTAA
AGCGCACACTAGAAAAGTGCTTCGAAAGGTGTCAGCAGGTGCGCAGAGCCGGAACCCGGCATGTT
CGCCCGCTGGGCCGAGTGTTCGCCCACTGAAGAGTCTTCGCCTTTACTTGACTTTAAAAGTGTCC
GCCCCTTAGGTCGCCAAACTACGACGAGAGTTGAGCCTTTTGAAGCGCCAGTCGCGTAGGGCTTT
AGGGCCAGGCCGAGTCAGAAAGGCTTTGATGACTCAAGGGGCGCAGCGTTAGGGAAAGGAGAGTG
AGGGGAAGAGGGGGCAGTCCTCGGCCCGATCATCCAATTCGCTCCAACAGACAGGCATGGTTCTG
TAGTCAAAGCAACTTCGTCACTTTCGTGTACCCATCGGACGGCAC
Found at i:195391 original size:15 final size:15
Alignment explanation
Indices: 195371--195400 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
195361 GTAGACCAAC
*
195371 TGAAGCAAGGACTAG
1 TGAAGCAAAGACTAG
195386 TGAAGCAAAGACTAG
1 TGAAGCAAAGACTAG
195401 CAGCGGATCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.13, G:0.30, T:0.13
Consensus pattern (15 bp):
TGAAGCAAAGACTAG
Left flanking sequence: Indices 194871 -- 195370
TGCTTTCGAGCCATTCTTCTTGGCTTGGCTACTAAGGACGAGTTTTGTCTTTCGCCAAATAACCC
TTAAAACTACGAAAATAGGGTTGTGAAAGTGGGGAAAAAGGGTCCCTTGCCTTAGTGAAAGGCGA
GCCTAATCTAAGTTAGAAGAAAAACTAACTAACCGACCCACTGGTCAGAAACCTTACCTGTGAAC
TCTTTCGATATTTAAAGTCTGTGTTGTCGTATTCCTAGGCTACTACCCTCCGCTATTGCTTTTCC
CGTGAAGTGAGCGGATTTAGCCCTGGAACTCCCTTTTTCTATTCCCCCTCGGATCACTTCAACTC
CCTTTGTCTCGGGATCTACTCAATCAATGATCTTGAACCACAGCGAAATGCTTCCTTTCTAGCAT
GCCAAAGCAAGGTAAGCGATCTATTCTATTTCCCAAAGTCGAATGCCAAAGCCTACTGAGCCAAA
GCTTCATGCCCGACCTTGGATCTTGCAAACAGTAGGTAGACCAAC
Right flanking sequence: Indices 195401 -- 195900
CAGCGGATCTGGATCTGGAACATCAGATCTTGTTCACTCTGACCTGACTACGTAACCTGTACTGT
GCCTATGAACTCATCCTAAGCTAAGGCAAGAGCGGATTCTCCGACATTGATCTTACTGTTGACTC
CTTCCTTTCCTAAGGCAGTAGATTCGGGGTCTAAGACAGATTTTCTATGCCACTAGAAAGCATCA
GGCTAGGAATTCCAAACCGGGGAGTTAGCTGCCCGAAAAGCCAGAGTTCGATCCCACAGCTTCAT
GCCCTTCTTTAAATTAAAGGCAGAGTTTCATTGAACAGCTGATCTTGGACTTGCAATCATTGAGT
TCAGAGCTGACTGAATTGCTTAAGAGAATTTCCCATAGCTAAAGCGAAGACTGATTCATTTTGAT
CTGGTCAAGGAAGATAAAAAAGCAAACTGTGAGAGTTCCCAGTGCCCCTCTGACTCCGTACTTGG
TACTTGAAAGAGAGGCTTGAAGCCGAGTTGAAGAGTATAATATGA
Found at i:220443 original size:21 final size:21
Alignment explanation
Indices: 220400--220445 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
220390 AATCCAARCG
*
220400 ATTAATTTCTTTCTATTCCTT
1 ATTAATTTCTTTATATTCCTT
*
220421 ATTAATTATCTTTAT-TTCTTT
1 ATTAATT-TCTTTATATTCCTT
220442 ATTA
1 ATTA
220446 TTTTGATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 16 0.73
22 6 0.27
ACGTcount: A:0.24, C:0.13, G:0.00, T:0.63
Consensus pattern (21 bp):
ATTAATTTCTTTATATTCCTT
Left flanking sequence: Indices 219900 -- 220399
TTTTGAAGTCTCGTTTCTGTAGTGGACCAATTCGTTAAAATACCGCCGAGCCATTTTTTATTAAC
GTAATGACACCGAGATCTGATTGCAGCCCGCATTACTAAATCAGCTGCTTTTTTTTTGGTACCAA
CAATTAAGAATTGCTTTGTCCTACTTGCTGCATCAAAAACKAAATCACAAGCTTCTGATAAAAAA
CGAGCAGTTCTAGTAAGATTTGTAATATGAATACCTTTACGCTTTGCAGAAATATAAGGTCCCAT
TCTCGGATTCCATTTCCTAGTACCATGACCAAAATGAACTCCTGCTTCGAGCATCTCTTCCAAAT
TAATGTTCCAATATCTTCTTATCATTTCTCCACATACTTCCTCTCTCTTTTTCTCTTTNNNNANT
GAAAAAAGAGAAAAAGAGAGAAAGAGAGACAAGGTACCCTGAAATAAATAATTGTTCCGATGGAA
CCTTCTCTTTTCCCGTAAATTGGACGTTGATACAGAATCCAARCG
Right flanking sequence: Indices 220446 -- 220945
TTTTGATTATTCTTTATTACTATTAACTATTAACAAATCACATGTAAAAAAAAAAAAATCNCAGG
ACCACCGATAGTTAGATAGTTAAAAGAATAAATCMGCTTTTAGGAATCATTAAATCCTATAAATG
ATTGTTTTGATGTATCATAGAAATTTTTTGAACTGCAAGAATCAAATAATTCTTTGTGGTGGAAC
AAAATATCTCTCATTTCCTCCTTGAATAAACTCTGATTTTTGGTTTTCAAAGGAATGTTCTTATG
TTGCCTTGAGCAGTACATGAATCCTTTGAATCCGGTCCCAACGGGTATCATACCACCTAGAACAA
CGTTTTCTTTCAGGCCTTTCAACCAATCAATACGACCGCGGAGAGCCGCTTTTGCTAAAACGCGA
GCAGTTTCTTGAAAACTCGCCTCCGATATGAAACTTTGAGTATTCAGAGAAGCTCTCGTTATTCC
TAATAATATGACTCGGTAACAGATCGCTTCTTCCAAAGCGCGCCC
Found at i:222915 original size:19 final size:19
Alignment explanation
Indices: 222891--222927 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
222881 CGAATTCAGA
*
222891 TTTCTATTTCTATATATAT
1 TTTCTATTTATATATATAT
222910 TTTCTATTTATATATATA
1 TTTCTATTTATATATATA
222928 ATTATAATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.30, C:0.08, G:0.00, T:0.62
Consensus pattern (19 bp):
TTTCTATTTATATATATAT
Left flanking sequence: Indices 222391 -- 222890
GATAAAAGTGCAAACCTATAGCCGCAGAAGTAGGAATAATGGCACCAGAAAGAATATTGTTTCCG
TAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGGGCAGCAATGAA
AGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAA
TGTAAAGACGGTTTTCAGTGCTGGTTATCCAATTACAGAAGCGACCCCATAGGCTTTCGCTTTCG
CGTCTCTCTAAAATTGCAGTCATGGTAAAATCTTGGTTTATTTAATCATCAGGGACTCCCAAGCA
CACGAATTCTCTATAAATAGATAATTGAGGACTTGTTATTCAACAGTATAACATGACCTATATAT
CCGTGTCAACCAACCTCCAGATTTATATGATCTTATCTATTTAGATTTAGACTTATCAGAAATTT
TTTTGAATAAATGAAATTCAAGTCAGTTAAAAAATCGAATTCAGA
Right flanking sequence: Indices 222928 -- 223427
ATTATAATATACGTATACGATTTCGTAAGATACTTATAATTAGAATGGGTTGCCCGGGACTCGAA
CCCGGAACTAGTCGGATAGAGTAGAAAATTTCCTTGTTAAAAAAAAAAAATAGGTAAAAAATCCC
TCCCCAAGCCGTGCTTGCATGTTTCGTTGCACACGGCTTTCCCTATGTATACATCTAGCTCAGCC
CCTTCTAGACGGAACCTCTAAGAAAGTTGAATACTCAATTGCTCAATCCTTACTGGTATACTGCA
GGAACATTTCATAAGAGAAATAGAAAAATAGAAATAGAAATCAAAAAATTTTTTGTTATCTCTTC
ATCATTTAGGAAAAATTTCGATTTCTATATTTTCATTTTCATAACCAATTATTTATGATTACTCG
GATCATTAATACAAATAATATCCAAATACCAAACTTTCCCTCGATATAACGTTCGTGAAATATAA
GAAACTCTTGGAAAGATCAAAGAAAGAACCCGCGCTTCTTCCGTC
Found at i:224009 original size:24 final size:24
Alignment explanation
Indices: 223982--224029 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
223972 ATGAATTTTC
223982 CTTGATATCTAACATAATGCATGA
1 CTTGATATCTAACATAATGCATGA
224006 CTTGATATCTAACATAATGCATGA
1 CTTGATATCTAACATAATGCATGA
224030 AAGGATCCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (24 bp):
CTTGATATCTAACATAATGCATGA
Left flanking sequence: Indices 223482 -- 223981
ACTTTTGTGTTTACAAGCCAAAGTTTTAACACACGAAAGCCGAAGTATATATTTTAGTCGATACA
AACTCTTTTTTTGTGAGGATCCACTATAATAATGAAAAAGATTTCTGCATAGACGCAGAAATCGG
GCGATAATATCAGAATCCGATGAATTAGCCGCCCGGGTCGGGTTACTAACGGGATATCCTATTTC
GTTACAAAAGTTCGTTTGTGTCAATGATCCAATCAAAGGAATAATTGGAACTATTGTATCGAGTT
TTTTCATAGCATTATCTATTATAAATGAATTTTCTAACATTTGACTCCGTACCACTGAAAGATTT
AGTCGTATACTTGAAAGATAACCCAAAAAGTCTAGAGAGTGCTTGGATAAGAGGTTTATATAGAT
CTTTTCCGGTTGAAACCACACATAAAAATGACATTGACATAAATTGACAAAGTAATATTTCCATT
TTTTCATCAGAAGAGGCGTATACTTTGAAGCCAAAATGAATTTTC
Right flanking sequence: Indices 224030 -- 224529
AAGGATCCTTGAACAAACATAGGACGGACTGAAAATCATTAGCAAAGACGTCTGTAAACTGTTCG
AATTTTCCGTATAAATTTATTCGCTCAAGAAGTACCCAAGAAAATGTTGATCGTAAATAAAAGGA
TTGGTTACGGAGAAAAAAAAAAAAGGATGGATTCGTATTCATATACATAAATATTATATAGGAAG
AAGAAGAATCTTGGATTCCTTTTTGTAAAAATGAAAATAGATTTCTTTGGAATAATAAGACTGTT
CCAATTCCACTCCTCATGAACAACGAGTCGGAATAAATGCAAAGAAGAGGGATCTTTTACCCAGT
AGCGGAGGGTTTGAACCAATTTTTCTAAATGGATAGGATAAGGTACTAATACATCTGATACATAA
TTTAAATGTGGAAATTTGTCCTCTAAAAAAGGAAATAGTGAATGAATTGATCGTAAATTATGAGA
TTTGACTATTTCTGACTCTTCTAAAGAAGATACTAATTGTAGGGA
Found at i:225430 original size:16 final size:16
Alignment explanation
Indices: 225383--225430 Score: 87
Period size: 16 Copynumber: 3.0 Consensus size: 16
225373 TCGACCCAAT
*
225383 CTTCAATTCATTTTTT
1 CTTCAATTCATTTTTG
225399 CTTCAATTCATTTTTG
1 CTTCAATTCATTTTTG
225415 CTTCAATTCATTTTTG
1 CTTCAATTCATTTTTG
225431 AATGTTCCGC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 31 1.00
ACGTcount: A:0.19, C:0.19, G:0.04, T:0.58
Consensus pattern (16 bp):
CTTCAATTCATTTTTG
Left flanking sequence: Indices 224883 -- 225382
TAGAGGATTTGGGGGTTTATTATTATTAAATAAATGATACATAGTGCGATAGAACAAAAACAAAG
GAGTATAATAAAAAAGAATAGATACTTCGGAAACAGATAAACTCATATACAGACTCTCGATCCCT
TATTTTTTCATCTAATTACTTTATGTTCATTATAGAATAAAATGAAAATAAGAAGATGGTTAGAA
ATCCTTTACTTTTTCAAGTCAATCGCTCTTGTGATTTTTGTTTAAAAAAAAAAATTCTTTATCAC
TATATTCTTTCTTTTACACATTCATCTCCGCGCATAGTGGAGAATAACTAATACTTAGGGCTCAT
TCAAAAAATCGAAAATCTGCTCATGGAAAAACCTTTCCCGCATCAGGCACTAATATATTTTTAAC
GTCTAATTAAATCGGATAATCGTTCCAATTAAGAACGGAAGCTCGTAACTTTTTTGTTTCCCTAT
AATTGGAGCCGTGGGGCTCTATCCATTTATTCCACTCGACCCAAT
Right flanking sequence: Indices 225431 -- 225930
AATGTTCCGCATCAAGAATGAAAACAAGGTTAGTAACTGATCCAGTAAAAATGAAATATTCTCAG
AATTCGACATTGATACGACATGCTGTTTTTTCCATTCATTCCTTTCAAGATCAGTCGTGGTCTTA
CAAACTATACCGATGGTATGGACGAATCTCTTTATTCATACAAATGCGTAAAAGATGTTAGTCGC
ACTTAAAAGCCGAGTACTCTACCGTTGAGTTAGCAACCCAAAAAAGCACTAAAAAAATTAGGTTA
TGTAGATACAATCAGAATCAAAATAAATAAATAAAGAGATTGAATCGTATGACACAATCAAAACA
TTAAATTAGAAAGAAAGAACCAAGAAATGAAATAATTTATAATGGATTCTGAACATAAAAAAAAG
ATCAGCTGAAAATAAAAGAAATTCTAAAAAAAATCTCAACTCAAATAGAAAAAAAAAAGTATTGT
TTTTAAAATTTGAAATTTATTAAACAAAAAAAAAATCTAAGTAAT
Found at i:239680 original size:18 final size:18
Alignment explanation
Indices: 239654--239689 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
239644 GAACCGGTCA
* *
239654 ATCATAATTTATAGTTTC
1 ATCAGAATTTAGAGTTTC
239672 ATCAGAATTTAGAGTTTC
1 ATCAGAATTTAGAGTTTC
239690 GCTTGCAAGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.44
Consensus pattern (18 bp):
ATCAGAATTTAGAGTTTC
Left flanking sequence: Indices 239154 -- 239653
CATTCTCGCCGTAGGATAGCAGCTGCTAGACAGACAAAAAGATAGTGATGGTTCCTCTTTGAGAG
CCCGAAGGGCAACGTACCTAATAGATAAAGGATTTTTCAAACGGGAACTCATCTTGCTTTGAGTA
GTTCAATTCGTTTTGGCCAAAGCGCAATTGGTGATGAGCACGCACAGGAATCTCGATAGGATACT
ATCCGTGTAATTCCATCCTTTTGATGTAACACTCTGCGTCCGGAAGTGATGGACTTGGGTCCGCT
CTTCAAATAGGTACCTAAAATCTTGATTATTTTCTTTTAGCCACCGATCGGTAAAGTCTTCTCAT
TCAAATTCAAGACGACTGGTTTTAGATGGGGCTTATCAGGCCACCACAAATGCAAGATCCATCAC
CATATCTATTGGAACTAGTCTTGAGTCGGTGGTGGGACTCGGTGCAACCGCGAGTAGAACTGGTC
AGACTCGCTCGTGGAACCCACTGGAATCCATAATAGAACCGGTCA
Right flanking sequence: Indices 239690 -- 240189
GCTTGCAAGATCCCATCCCACCATGTCCGAATTGATAGTAACCTAACCTCGGATCCAAGTACAAC
ATCCGCTGAAGCTGGGCCAAGTAAATCGAAATCGGCCAATGGATCAAATGAGACCGAACCCCTCT
CTTCTTGCGGATTGCTTCCTTGTCTTCGGTCGTAGGTTTCAAGCCTATTCCAGTCCGTAGCCCTT
TTGCTTACTCAAGATCCCCGAATCCGAATAGAATGAATGAGATATCCTTTCGTTTAAGAAGAACG
AAAGAAGACGATTCCAATCTTAGAGTCTAAGGGACATTTCTTATCGTGGATTCTGTGCATCCATT
CTAAGATCGTACATTCAATTAAGAATGAAGTATGTGAGTCTTTATTTAGAATTTAGATTAGAGCT
CGCTCTATCAGTCCAATAGAAAGACAAGCCATACAGGGAAGCCATAGAGGCAAGTATCAACTTCC
TATTGAGTCAGATTTCGCTAATATGGGCATTAGGGTATCCCTTTC
Found at i:258895 original size:14 final size:14
Alignment explanation
Indices: 258876--258904 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
258866 GAGCTCTACT
258876 GTTCTAAATAGTGA
1 GTTCTAAATAGTGA
258890 GTTCTAAATAGTGA
1 GTTCTAAATAGTGA
258904 G
1 G
258905 AAAGAGTTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.07, G:0.24, T:0.34
Consensus pattern (14 bp):
GTTCTAAATAGTGA
Left flanking sequence: Indices 258376 -- 258875
ACAGGAATGCTTACTCCCGAATTGTCTTATTCTTCTTTCAAGTAAACTCCTTATTCGTTATCATA
AGGTACGGAGTTGGCTTGTTAAAGGAGTTGAGTACTTACTCTCCGAATATCATTATTCTTGTTTA
CTATGTGCCTATCCAACCCGAAGACTCTTATTCGTGGTGGAGTGCTTCGAATAGGATCCGATCCC
ATCCCAGCAGTCAAACTCCTTCCCTTCCCGACCCGGCTCACCTGCCTCTGAAGCTGGAATGCCTT
TATCTTTATAGAGGAGGCTACCCGAGGAATCGAAAAGTTTGAAGTGGGATGTGGAATGTGATTGG
TGATGGATGGTGGTTATGAAATAAGTTCTGCATCAGATGATGAGCCCATGCGCAAATTTTCTCTT
TTATTTTCGCCCGGGCTATTAGATTGAGTCGAAAGCCTACCAACGCATATTCCGATTCGAGCGAG
AGCCCAAACGGGGGAGGCGATAACATCTTGATCGAGAGCTCTACT
Right flanking sequence: Indices 258905 -- 259404
AAAGAGTTTGAAAAATTCGATCAAATCGATCGAGAATCTCATCATCTGTTAGGTGGGCCAACCGA
CCGATCGAGTTGGGCTGGGCGTCCATGTCACAGAACCTTTCTTCTAGCCAAGAATCCCATTATTG
ATCGAATCGGGGCAGATCCAATGAATTGGTAAATGAAAAATCTACCCGTTTTAACACTCAGAAAA
AAACCTAGAAAAGGCGAGGCAAGGGGTTCTCTATCTCTAGGAAGATTGTGTCCAGGATCTGGTAA
TCTAAGCCTTGCTTCTTCTGGTCGGCTCGTATTAGCCTGTGCTTTATTACACCCCCCTTTCCTTT
AGTCTTTTCAACGGTACTTGAATCTTAAGTCGCGGTCATGTCTCGCCCCCCCAGTATAGTGACCG
GTTCCATGTTTCCCCCGAATTTCATCAGTTCCAGGCTCAAGTGCCTGCTCATCCATCTTCATTCA
AAAGGCGAAAATTTCCATTGAGTGAGTGTAACTGCTATGGTTTAC
Found at i:269621 original size:18 final size:18
Alignment explanation
Indices: 269598--269633 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
269588 GAGTCATCCT
269598 ATTCAAATTTAGCTATGC
1 ATTCAAATTTAGCTATGC
269616 ATTCAAATTTAGCTATGC
1 ATTCAAATTTAGCTATGC
269634 TAATGGAACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.39
Consensus pattern (18 bp):
ATTCAAATTTAGCTATGC
Left flanking sequence: Indices 269098 -- 269597
TTGTTCATTGGAGCGCCGGAGTGCGGAGGTTGTTCCCATCATTGAAGTCAAAGTGTGGGACTGAG
CCCTTCGAATGAGAAAAAAGTGCTTAGTTTCGTTGGAAAAAACAACGCACATCATATTGACTTTC
TCTCGCCCTACTTCTAAGGATAGATAGAAAAGGTTGGAGATAGTGACTTTCTGAAAATTCTCTCC
TTTCTAAAGCTGCGCAAGGCGGCCCCCCCAGAACAAAGCCCCAGCCTTCTTTTCTCCCTTTAACG
CCTCGCTTCCTATTCATTTGTGGGTCGGGACCCGAGGGCCTTTTTTTCTCAACAGGTAATTTCAA
GAATCAACCAACCGACAAATCCGTAGCCCAGGCAACTCACAGCCTCCCTTTCGCCTAAATGAAAG
AAAGGGGATGAATCAAATCAATAAGCTTTTTTTTTGATTGATTCAGGGCGCAGCGAAGCAAAATT
CAATCAAGGCAAGGGGGCTTACTTTTACTGAAACTGAGTCATCCT
Right flanking sequence: Indices 269634 -- 270133
TAATGGAACAGGAAAAGTTATCAGATGATATGGACCTCACGAGATGAGGGAGAACCGAACATTGC
TTAGGGGTCGTACTCTGTCCCGCTTGGTGGACGATTTCCTTTTATAAATTATAAATCTTTCTCCC
ACACGCCTTTGTCCTCTTTCACCGAAGAGGAAAGAAGAGCGGACAGAGACCTCAATTTTTATTAG
ATTCATTCCTAAGCTTGCTTGCTTTGTTCCAGCAAGATGATCAGTCCGAGAGGGCTGGAGAGAAG
AGAAAGCGGTAAAAACCTCTCTGATTCGATCACCGAGCAGTCGGACGACTTTTCAGTAACCCAAG
ATGACCCCTTCGACACTTCTTTCGCTGTATACCCCCTCTATCCTTCGGAGGTGGAAGAAAGGGTA
CTATTTTATATATATATATAGTAAGTAGGGCCCCAGAACGCTAAAAAGGTGGGAGAACAAGAGTT
GTCACGATAGGAAAGAGAAAAATGCAAGATGTCATCCTTCAATAT
Found at i:271485 original size:13 final size:13
Alignment explanation
Indices: 271448--271498 Score: 66
Period size: 13 Copynumber: 3.8 Consensus size: 13
271438 ATTCACTATT
271448 CTATTACTATTTTA
1 CTATTACT-TTTTA
* * *
271462 TTAGTATTTTTTA
1 CTATTACTTTTTA
271475 CTATTACTTTTTA
1 CTATTACTTTTTA
271488 CTATTACTTTT
1 CTATTACTTTT
271499 CTTTTATTAT
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
13 26 0.84
14 5 0.16
ACGTcount: A:0.24, C:0.12, G:0.02, T:0.63
Consensus pattern (13 bp):
CTATTACTTTTTA
Left flanking sequence: Indices 270948 -- 271447
CCGGCAAAGCCTCGGAGGCTCTGCTGATTCATGTCCTTGGTTCGGTCTCTCTTCATGATTACTCG
GCCGTTCTTGTTTCTACCTTGATCGAACAGCTGGATTATTCATATTCAGTCCGAGTTCAAGTGTT
GCATTCCCGCAAGACAAAGACGAGCTCCTTCTGTACGTCAACCCGATAGCCCTTGGAAGACTCTC
CGTCTGAGACCAAAGGAGAGGGAGCGACCTCTTGAATGAGAAGAAGTTGAATCACGCTCGTCCGA
AGCAGAGTCAATCTACTTCCCCCGGAGAGAGAGATCCGCGTGCACATTGAATTCATAGGGGCTTC
AATCTCTTTTCAATTAGCCCACGCACCTACGTAAAGCCCTCATTATAAAGCGGAGACTTAAGCTT
TGGATTTGAATTGGATTTGAACAAGAAACTACGTCCACATCGACTTTAGGAAGGGCCTTAGCCTT
AGCTAAAAGATCTCAGTTTGAACCAGGAGAGATAAATTCACTATT
Right flanking sequence: Indices 271499 -- 271998
CTTTTATTATTATTACATTCTCGTAATATTAATATATAGAGAAATATATAGATAGAAAAATATAG
ATAATAAATAGATTACAGATATAGTATAATTTAAATATCATAATATAGAATCAAAAAGAAATAGA
CTCTATATCTATATATAGAGAGTATATATGGTGAAGCGGGTAGCGGGAATCGAACCCGCATCGTT
AGCTTGGAAGGCTAGGGGTTATAGTCGATGTTGATTCATCATCTTTAACATCTCTAATTCAAAAC
CGAATATTCAACTTTTGTTTCATTCGGCTCCTTTAGGGAAGCTGGCAAAATTTCCAGCTATAAGA
CGTGAGCGAAAAAAATTTGACCCATAACATCTATGTCAGCCTTTCACTATCTTAATAGATTCAAA
ATAACGCACTTTCTAGATGATCCCTCTAGACACGAGAGAGAGAGGGTTTTTAATAATCTTTCTAG
TTACTTCGTTCTCTATTTCGATTTGAGAGAATCCTTAGGAAAAGC
Found at i:271555 original size:14 final size:14
Alignment explanation
Indices: 271529--271566 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
271519 TCGTAATATT
271529 AATATATAG--AGA
1 AATATATAGATAGA
271541 AATATATAGATAGA
1 AATATATAGATAGA
*
271555 AAAATATAGATA
1 AATATATAGATA
271567 ATAAATAGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 9 0.39
14 14 0.61
ACGTcount: A:0.61, C:0.00, G:0.13, T:0.26
Consensus pattern (14 bp):
AATATATAGATAGA
Left flanking sequence: Indices 271029 -- 271528
CCTTGATCGAACAGCTGGATTATTCATATTCAGTCCGAGTTCAAGTGTTGCATTCCCGCAAGACA
AAGACGAGCTCCTTCTGTACGTCAACCCGATAGCCCTTGGAAGACTCTCCGTCTGAGACCAAAGG
AGAGGGAGCGACCTCTTGAATGAGAAGAAGTTGAATCACGCTCGTCCGAAGCAGAGTCAATCTAC
TTCCCCCGGAGAGAGAGATCCGCGTGCACATTGAATTCATAGGGGCTTCAATCTCTTTTCAATTA
GCCCACGCACCTACGTAAAGCCCTCATTATAAAGCGGAGACTTAAGCTTTGGATTTGAATTGGAT
TTGAACAAGAAACTACGTCCACATCGACTTTAGGAAGGGCCTTAGCCTTAGCTAAAAGATCTCAG
TTTGAACCAGGAGAGATAAATTCACTATTCTATTACTATTTTATTAGTATTTTTTACTATTACTT
TTTACTATTACTTTTCTTTTATTATTATTACATTCTCGTAATATT
Right flanking sequence: Indices 271567 -- 272066
ATAAATAGATTACAGATATAGTATAATTTAAATATCATAATATAGAATCAAAAAGAAATAGACTC
TATATCTATATATAGAGAGTATATATGGTGAAGCGGGTAGCGGGAATCGAACCCGCATCGTTAGC
TTGGAAGGCTAGGGGTTATAGTCGATGTTGATTCATCATCTTTAACATCTCTAATTCAAAACCGA
ATATTCAACTTTTGTTTCATTCGGCTCCTTTAGGGAAGCTGGCAAAATTTCCAGCTATAAGACGT
GAGCGAAAAAAATTTGACCCATAACATCTATGTCAGCCTTTCACTATCTTAATAGATTCAAAATA
ACGCACTTTCTAGATGATCCCTCTAGACACGAGAGAGAGAGGGTTTTTAATAATCTTTCTAGTTA
CTTCGTTCTCTATTTCGATTTGAGAGAATCCTTAGGAAAAGCTTTTTGTTTCTACCGAGCTAAAA
CAAAACATCGATACCTATAATAAACCAAAGTCGTCGTTTAATACT
Found at i:272967 original size:20 final size:19
Alignment explanation
Indices: 272944--272996 Score: 70
Period size: 20 Copynumber: 2.7 Consensus size: 19
272934 TATTGATTTC
**
272944 TATATATTTAGATTGCTTGA
1 TATATA-TTAGATTGAGTGA
272964 TATATATTAGAATTGAGTGA
1 TATATATTAG-ATTGAGTGA
272984 TATATATTAGATT
1 TATATATTAGATT
272997 TTTTGATTGG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
19 7 0.23
20 23 0.77
ACGTcount: A:0.36, C:0.02, G:0.15, T:0.47
Consensus pattern (19 bp):
TATATATTAGATTGAGTGA
Left flanking sequence: Indices 272444 -- 272943
ATGCGATTATTGTATATAAATGAACCTTTTGTCGAGATAAGAGAATCGGGCAGAATTAAGATTAA
GATAGAATTAGAAAAGAATCATGAAAATTAGAATTAGAGTGTTGACGTATTGTATTTCTTCATCG
GACTTAATGAGAAAAGAAGAATTGTTGATTCTATATTATTTGATCCTATATCCTAGGAATGTAAA
TCGTCCGGCTTCTGATTGTCGTTGTTTCAATAACAACTATTTTTGTTTTCGAATCAAATAAGTCA
TGTTATCTACTATGATTTGTTGGAATAAAAAATGGCCCATGATCCGGGCTCGGTCATGAAAATAA
AAAGGGACCCCTTGGAACAAAGAACAAAATAAAAAAAAAAGGTAGTTTATTTTTTATTTATTTTC
TTTTTTATTTTATATATAATTTTAATAAATTTTCTTTTATATAATTGTCCTAAATTTTATTTATT
TGAGTTTTGTTATAGAAATCAATATTTTATTTATATATTGATTTC
Right flanking sequence: Indices 272997 -- 273496
TTTTGATTGGAAGATTGAGTTTAAGATACTTTTTTAAAGCCATTAATTTATCTACTTTATTTATT
TTTTTATAAATGAAATTGGACGAATTGTTGATGAAAGTTTTATACATTTCTAGTTTTATTATTTT
TTATTATCGATGAATTAGTATATATATTAATACTTATTTGATATTATATATTTATACTCCTAATA
CTTATTTAAGTATATTAATCCTCTTAAGTCTTATATATTTAAGTCTTATATATTAATTTACGGAG
AATATACTATTTATTCTACCAAAAATACTAAGTTTTCGTGATATGAATTGAATATACTAATATTT
TTCATGTAAGAGAGACCTATAGGTCTGACAGACTGAACATGGCATGTCTTACTGATTGACCTAAG
AATATGCACATTCCATTGGAGGGGCTAACTCTCATATCGCTAGTTCATCCCGAGAGAAAGAGAAG
AGAGGAAGGGATTGGACTTTTCGCAGGGAAGGAAAGTAAGATTAT
Found at i:273235 original size:15 final size:15
Alignment explanation
Indices: 273215--273245 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
273205 ATTAATCCTC
273215 TTAAGTCTTATATAT
1 TTAAGTCTTATATAT
273230 TTAAGTCTTATATAT
1 TTAAGTCTTATATAT
273245 T
1 T
273246 AATTTACGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.55
Consensus pattern (15 bp):
TTAAGTCTTATATAT
Left flanking sequence: Indices 272715 -- 273214
ATGATTTGTTGGAATAAAAAATGGCCCATGATCCGGGCTCGGTCATGAAAATAAAAAGGGACCCC
TTGGAACAAAGAACAAAATAAAAAAAAAAGGTAGTTTATTTTTTATTTATTTTCTTTTTTATTTT
ATATATAATTTTAATAAATTTTCTTTTATATAATTGTCCTAAATTTTATTTATTTGAGTTTTGTT
ATAGAAATCAATATTTTATTTATATATTGATTTCTATATATTTAGATTGCTTGATATATATTAGA
ATTGAGTGATATATATTAGATTTTTTGATTGGAAGATTGAGTTTAAGATACTTTTTTAAAGCCAT
TAATTTATCTACTTTATTTATTTTTTTATAAATGAAATTGGACGAATTGTTGATGAAAGTTTTAT
ACATTTCTAGTTTTATTATTTTTTATTATCGATGAATTAGTATATATATTAATACTTATTTGATA
TTATATATTTATACTCCTAATACTTATTTAAGTATATTAATCCTC
Right flanking sequence: Indices 273246 -- 273745
AATTTACGGAGAATATACTATTTATTCTACCAAAAATACTAAGTTTTCGTGATATGAATTGAATA
TACTAATATTTTTCATGTAAGAGAGACCTATAGGTCTGACAGACTGAACATGGCATGTCTTACTG
ATTGACCTAAGAATATGCACATTCCATTGGAGGGGCTAACTCTCATATCGCTAGTTCATCCCGAG
AGAAAGAGAAGAGAGGAAGGGATTGGACTTTTCGCAGGGAAGGAAAGTAAGATTATACAGGAAAA
AAAACTTCAACCACCATTAGTGTGTTCCTTTTCCCTTCGGGTAGATGTCTATTGAACAACGTTCC
CCTAGGAATCCCTATGTCCTATGTATTTTCATCTTTCTCTAAACGCAAGAGCTAACTATCTTTCC
TATCTTAGGAGTAGTCTATCAATCCCTTAGCTGATCTTGGGACATTCAAAGATCCCCACTCTGTC
CTAAGCAGATGCTCTGCAGCGTCGACGTGACTCATACCTAGGCTA
Found at i:294206 original size:17 final size:17
Alignment explanation
Indices: 294184--294218 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
294174 AGTTCTTCCC
294184 TTCGGAATCAGATAGAT
1 TTCGGAATCAGATAGAT
294201 TTCGGAATCAGATAGAT
1 TTCGGAATCAGATAGAT
294218 T
1 T
294219 CATATCCGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.31
Consensus pattern (17 bp):
TTCGGAATCAGATAGAT
Left flanking sequence: Indices 293684 -- 294183
GGCGATCTCAGATGTGTTGATATCAATGGTGGCTCATTATTTCGATGAATTATTTCTTCAGACAG
AAGAAGATTATGTAAACACTTACTCGAAATCTCACTTATCAGATTCCATTGTGGAAGACACAATT
TTTTCTGAAGAATTCGCCATGATATATCTGATCCATGCATAATATTCTGAAAAATAGATACAAAT
TTTTGACTGCTACTTAGTATCGGTAATAGGTCTGAAAAGGTATCTAAAAATATCCAATTTAGATA
TTTGTACCCTGGCGAAGTAAGGAACCATGGCATATATGTTTGGAATAGATTCCATTTAGAGAGAG
TTGAAAAAGCACTATCTCGTTGAAAGGTTCTATACATCTGCCCTTTTTCAACGCATTTCTTTAGA
CAAAGACTCCGTTTTTTCCTCTTTTTGGATGGTAAATATTTCTCAGAACATGGAGTGTGAATCAA
ACCCATGTTTGAATTGAAATTGAGATACTGATGCAAGTTCTTCCC
Right flanking sequence: Indices 294219 -- 294718
CATATCCGAAAGAGGTTGACAATAAGTTCTTTCAAAATTGACTATTTGTCCCTCTGTTAGAGGTG
TTCCAGAAATGTCTGCAATCAAATAAATAGCTCTACGAACGAATGGATCGGATCGAATTGGAAAA
TGGAAAGATTTGTACAAGTTATACCTTTCGTCACTACTTTGTGGAAAATCATTAGGTATGAATAT
GTTAGATACCTGTGACTCGATTGGTGAAATAGTATCTCTCTCCAAAAAAGCATGTTTTTTTTTAC
CGCCGCACAAAGAAAATATTTTGTTGCGAATGAACAAGATATTGAAGAATTGTCCATACGTAAAA
TCATAATTCTTGATACGGGCCTTTTCCACATAAAAAGGGAATCTTTTGTTACAATAGAAACAGAA
GTGATGTAGATTATTCAAGAATCGAAGTCGATTTGCTTTATAAAAAGAAGATATCAATGAACTTC
TATGAAATGGTTTCAGGGGATTCAGCCAATTGTCTTGATCGTGGG
Found at i:295053 original size:21 final size:21
Alignment explanation
Indices: 295027--295095 Score: 75
Period size: 21 Copynumber: 3.1 Consensus size: 21
295017 ACTCACAAAG
*
295027 AAAAAAGGAAGTGAGTTAGAC
1 AAAAAAGGAAGTGACTTAGAC
* * *
295048 AAAAAAAGAAGTAACTTGGAC
1 AAAAAAGGAAGTGACTTAGAC
295069 AAAAAGAAAGGAAGTGACTTAGAC
1 --AAA-AAAGGAAGTGACTTAGAC
295093 AAA
1 AAA
295096 TCTTTTTTGT
Statistics
Matches: 38, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
21 17 0.45
22 3 0.08
23 3 0.08
24 15 0.39
ACGTcount: A:0.57, C:0.07, G:0.23, T:0.13
Consensus pattern (21 bp):
AAAAAAGGAAGTGACTTAGAC
Left flanking sequence: Indices 294527 -- 295026
ATTGTCCATACGTAAAATCATAATTCTTGATACGGGCCTTTTCCACATAAAAAGGGAATCTTTTG
TTACAATAGAAACAGAAGTGATGTAGATTATTCAAGAATCGAAGTCGATTTGCTTTATAAAAAGA
AGATATCAATGAACTTCTATGAAATGGTTTCAGGGGATTCAGCCAATTGTCTTGATCGTGGGATA
TCATTGAGAAATAGGAATCCGTGTTATCAAAAGATTTCTTATTTCTAGTATGGAATGAGTCAATC
ATCCACTTTAGTATCTTATTAGTGAACAAAAATAGTGATATTGTTCCTCCATTGATCAAAAATTT
CGATTTTTGGGAAGTATCATGATCATCCAATAAGAAGGGTTTCAATTTTTTCAAATGAACGATTT
GAAGACCTATTGATTCTAACAGCTGATTGCAGAGTTGATCATTCGAACCTTTCAATTCATAGATA
TGAATCTCGGACCTATGAATGGGGATATTCCCGAAACTCACAAAG
Right flanking sequence: Indices 295096 -- 295595
TCTTTTTTGTCGATAACCTCAGACCAATCAATCGAATATTGATTAATACGTAATCGATCGAACAC
TACTTGAAAAAGAAAACGGCTCTTCTACTCAGAAATGAAATGTTCCAAATGTTCCTGGAAATTAT
TGCTCCCATTAGATAGACCATTTGTATCTATATGCATTAGGATCCCAATTCATGGATCTCTCGGT
TCGAGAAAGAAAAAAAAAGAGGATCGAACCATTTCTTCTGACTCTGTTTCAAATTCGATAAATGT
TGGTTGATCGTATATTTCATTATAGTTCTATGATTCAGAATTTCCTATTTGATTTGAATTCCATA
TTCGAAGTTGCGATCGGATCTATTCATTAAAAAGAATTGATTCAATACATTTCTTATGTACCCAT
AGGTGCTATATTGGATTTGAATCAGATTTCGGATCAATCCATATTGATTGATTGACTGCCTCCAT
TATGTTGTTGCTAGCAAATACCACTCTTTTTTGTTTTGGATCTTC
Found at i:295088 original size:24 final size:23
Alignment explanation
Indices: 295027--295095 Score: 88
Period size: 24 Copynumber: 3.0 Consensus size: 23
295017 ACTCACAAAG
*
295027 AAAAAAGGAAGTGAGTTAGAC-A
1 AAAAAAGGAAGTGACTTAGACAA
* *
295049 AAAAAA-GAAGTAACTTGGACAA
1 AAAAAAGGAAGTGACTTAGACAA
295071 AAAGAAAGGAAGTGACTTAGACAA
1 AAA-AAAGGAAGTGACTTAGACAA
295095 A
1 A
295096 TCTTTTTTGT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
21 11 0.28
22 10 0.26
23 3 0.08
24 15 0.38
ACGTcount: A:0.57, C:0.07, G:0.23, T:0.13
Consensus pattern (23 bp):
AAAAAAGGAAGTGACTTAGACAA
Left flanking sequence: Indices 294527 -- 295026
ATTGTCCATACGTAAAATCATAATTCTTGATACGGGCCTTTTCCACATAAAAAGGGAATCTTTTG
TTACAATAGAAACAGAAGTGATGTAGATTATTCAAGAATCGAAGTCGATTTGCTTTATAAAAAGA
AGATATCAATGAACTTCTATGAAATGGTTTCAGGGGATTCAGCCAATTGTCTTGATCGTGGGATA
TCATTGAGAAATAGGAATCCGTGTTATCAAAAGATTTCTTATTTCTAGTATGGAATGAGTCAATC
ATCCACTTTAGTATCTTATTAGTGAACAAAAATAGTGATATTGTTCCTCCATTGATCAAAAATTT
CGATTTTTGGGAAGTATCATGATCATCCAATAAGAAGGGTTTCAATTTTTTCAAATGAACGATTT
GAAGACCTATTGATTCTAACAGCTGATTGCAGAGTTGATCATTCGAACCTTTCAATTCATAGATA
TGAATCTCGGACCTATGAATGGGGATATTCCCGAAACTCACAAAG
Right flanking sequence: Indices 295096 -- 295595
TCTTTTTTGTCGATAACCTCAGACCAATCAATCGAATATTGATTAATACGTAATCGATCGAACAC
TACTTGAAAAAGAAAACGGCTCTTCTACTCAGAAATGAAATGTTCCAAATGTTCCTGGAAATTAT
TGCTCCCATTAGATAGACCATTTGTATCTATATGCATTAGGATCCCAATTCATGGATCTCTCGGT
TCGAGAAAGAAAAAAAAAGAGGATCGAACCATTTCTTCTGACTCTGTTTCAAATTCGATAAATGT
TGGTTGATCGTATATTTCATTATAGTTCTATGATTCAGAATTTCCTATTTGATTTGAATTCCATA
TTCGAAGTTGCGATCGGATCTATTCATTAAAAAGAATTGATTCAATACATTTCTTATGTACCCAT
AGGTGCTATATTGGATTTGAATCAGATTTCGGATCAATCCATATTGATTGATTGACTGCCTCCAT
TATGTTGTTGCTAGCAAATACCACTCTTTTTTGTTTTGGATCTTC
Found at i:297456 original size:15 final size:15
Alignment explanation
Indices: 297436--297470 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
297426 TATAAGGACC
297436 ACTACTACAAATAGT
1 ACTACTACAAATAGT
* *
297451 ACTACTCCAAATGGT
1 ACTACTACAAATAGT
297466 ACTAC
1 ACTAC
297471 ACCCTTGATC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.40, C:0.26, G:0.09, T:0.26
Consensus pattern (15 bp):
ACTACTACAAATAGT
Left flanking sequence: Indices 296936 -- 297435
CCGAATTCAAGTTGATTATGTTTCGACCCTTCCTCGGAGAAAGACGATCAAACAATTCCCAATCA
GGGTCCTTGCCGATTGGATCATCCATATAATATACAAAAAGAAACTCCAGATATTTGATATCTTT
CTCTTTGAATGAGATCTCAATTCCAGCGACAGTTTCATTAGATATCTTACAACTAGAATCCCTCT
TTTTTCCGATCCAGTTCCTCCACCACCGCGAACCCCAGTTAGATTCAGACATGATACACTTTTTA
GTTATTGGGAGAACCCGAGTACTCTCTTGCGGATCCAGGAAACAGCTCTCAGAGATCTTTTTTCC
TTTTGGAAGATACAGGAGCGAAACAATCAAGCTATTGATATTGGAAGACCCAAAGGATTCTTCCA
ATGTATCATTTCTGGGTCCAATGGAATTCATAGGTATAGGAAGAATCCCCGTCAAATAGAGATTT
TTTCTTTCGACCAGCTTTCGATTGTTAATACGATATATAAGGACC
Right flanking sequence: Indices 297471 -- 297970
ACCCTTGATCGTGAAATATCGATTGCTTGTTGAACTCTGTGAATTGCGTGAAAGTAGGATACTCC
AAATTCGGGAATCCAAGAGTTTTATAAAACGTTCTTGATGGAAAAAAATGTGAATGAAAGATCCC
ACTGAATTGAATTGAGTCCATGAATCTAAGAAATAGTGAGAATTCTTGATCTCTCTCAATATCTC
TCTCAATTCGAAAATCCAGGATTTTACTTGATGTCCTTTCATTGATTCCTCCGAAATTGGATTGA
TTTATCCTCAAAATTTTATTTCAATTGGAATTTGGTTATTCACCATGTACGAGGATCCCCGCTAA
GCATCCATGGCTGAATGGTTAAAGCGCCCAACTCATAATTGGCGAATTCGTAGGTTCAATTCCTA
CTGGATGCACGCCAATGGGACCTTCCAATAAGTCTATTGGAATTGGCTCTGTATCAATGGAATCT
CATCATCCATACATAACGAATTGGTGTGGTATATTCATATCATAA
Found at i:300208 original size:21 final size:21
Alignment explanation
Indices: 300192--300232 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
300182 TTAAAAAATG
300192 AAATATTAAAAAAAAAAAAAA
1 AAATATTAAAAAAAAAAAAAA
300213 AAATATTAAAAAAAAAAAAA
1 AAATATTAAAAAAAAAAAAA
300233 GGCGAACATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (21 bp):
AAATATTAAAAAAAAAAAAAA
Left flanking sequence: Indices 299692 -- 300191
ATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACCCCTTGGGGT
TATCCTGCACTTGGAAGAAGAAGTCGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTCG
CCGTAGTAAATAGGAGAGAAAATAGAATTTGTTTCTTCGTCTTTTCAAAAAAAAAATAGGAGAAA
TTGACTGTGACACGTTCACTAAAAAAAAATCCTTTTGTAGCAAATCATTTATTAAGAAAAATAAA
TAAACTTAACACAAAGGCGGAAAAAGAAATACTAGTAACGTGGTCCCGAGCATCTACCATTATAC
CCACAATGATTGGCCATACTATTGCTATCTATAATGGAAAGGAACATGTACCTATTTATATAACA
GATCGTATAGTGGGCCATAAATTGGGAGAATTTACATCTAGTCTAAATTTCCGGGGTCATGCAAA
AAATGATAATAAATCCCATCGGTAATTCATTAATATTAAAAAATG
Right flanking sequence: Indices 300233 -- 300732
GGCGAACATCATTCATTATTAAGAGGTTAATCTTATGATAAAAAAAAGAAAAAAGAACCCATCTA
CAGAAGTATATACTTTAGGTCAACATATATCTATGTCCGCCCACAAAGCGCGAAGAATAATTGAT
CAAATTCGTGGGCGTTCTTACGAAGAAACACTTATGATAGATTTCTATTTCTGATAGATTTATAT
TTCATATTTTTTTTTTTTTTTTTTTATTGGGGTTATGGGCGAAGTGGTTACGGGCGAACGACGGG
AATTGAACCCGCACATGGTGGATTCACAATCCACTGCCTTGAGCCACTTGGCTACATCCGCCCCT
AATATTATATTCTATTTACAAATTAAAAAGATTTGTAATTTCTAGCATTTACCATTCTATTTTTT
CTTTATTATAAAAACGAAATACAAAAAGAAAATATAAAAGACAAAAAATGAAATTGAAAGCTGTA
TCTTTTATTACTTTATCATTTTTATATTTTTTTTTTAATCTAACA
Found at i:300419 original size:17 final size:17
Alignment explanation
Indices: 300397--300430 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
300387 GAAACACTTA
*
300397 TGATAGATTTCTATTTC
1 TGATAGATTTATATTTC
300414 TGATAGATTTATATTTC
1 TGATAGATTTATATTTC
300431 ATATTTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.09, G:0.12, T:0.53
Consensus pattern (17 bp):
TGATAGATTTATATTTC
Left flanking sequence: Indices 299897 -- 300396
CACGTTCACTAAAAAAAAATCCTTTTGTAGCAAATCATTTATTAAGAAAAATAAATAAACTTAAC
ACAAAGGCGGAAAAAGAAATACTAGTAACGTGGTCCCGAGCATCTACCATTATACCCACAATGAT
TGGCCATACTATTGCTATCTATAATGGAAAGGAACATGTACCTATTTATATAACAGATCGTATAG
TGGGCCATAAATTGGGAGAATTTACATCTAGTCTAAATTTCCGGGGTCATGCAAAAAATGATAAT
AAATCCCATCGGTAATTCATTAATATTAAAAAATGAAATATTAAAAAAAAAAAAAAAAATATTAA
AAAAAAAAAAAGGCGAACATCATTCATTATTAAGAGGTTAATCTTATGATAAAAAAAAGAAAAAA
GAACCCATCTACAGAAGTATATACTTTAGGTCAACATATATCTATGTCCGCCCACAAAGCGCGAA
GAATAATTGATCAAATTCGTGGGCGTTCTTACGAAGAAACACTTA
Right flanking sequence: Indices 300431 -- 300930
ATATTTTTTTTTTTTTTTTTTTATTGGGGTTATGGGCGAAGTGGTTACGGGCGAACGACGGGAAT
TGAACCCGCACATGGTGGATTCACAATCCACTGCCTTGAGCCACTTGGCTACATCCGCCCCTAAT
ATTATATTCTATTTACAAATTAAAAAGATTTGTAATTTCTAGCATTTACCATTCTATTTTTTCTT
TATTATAAAAACGAAATACAAAAAGAAAATATAAAAGACAAAAAATGAAATTGAAAGCTGTATCT
TTTATTACTTTATCATTTTTATATTTTTTTTTTAATCTAACATAATAACTTTACAAAAAAAAGAT
TAAAAAAACAAAAGATTGAAAAGAAGATATATAAATTCAAAATTAGTACATAAAACAAATATAAT
ACTGAATCCGAAACAAATATCTAAAAATACACTTTTTCTTATGTTGAAGTAAAGAAAAAAAAACT
TATTTATGTATTTATGTTAAACTTATTTATGTATTTATGTTAAAG
Found at i:300770 original size:16 final size:16
Alignment explanation
Indices: 300745--300777 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
300735 ATAACTTTAC
300745 AAAAAAAAGATT-AAA
1 AAAAAAAAGATTGAAA
300760 AAAACAAAAGATTGAAA
1 AAAA-AAAAGATTGAAA
300777 A
1 A
300778 GAAGATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.25
16 8 0.50
17 4 0.25
ACGTcount: A:0.76, C:0.03, G:0.09, T:0.12
Consensus pattern (16 bp):
AAAAAAAAGATTGAAA
Left flanking sequence: Indices 300245 -- 300744
TCATTATTAAGAGGTTAATCTTATGATAAAAAAAAGAAAAAAGAACCCATCTACAGAAGTATATA
CTTTAGGTCAACATATATCTATGTCCGCCCACAAAGCGCGAAGAATAATTGATCAAATTCGTGGG
CGTTCTTACGAAGAAACACTTATGATAGATTTCTATTTCTGATAGATTTATATTTCATATTTTTT
TTTTTTTTTTTTTATTGGGGTTATGGGCGAAGTGGTTACGGGCGAACGACGGGAATTGAACCCGC
ACATGGTGGATTCACAATCCACTGCCTTGAGCCACTTGGCTACATCCGCCCCTAATATTATATTC
TATTTACAAATTAAAAAGATTTGTAATTTCTAGCATTTACCATTCTATTTTTTCTTTATTATAAA
AACGAAATACAAAAAGAAAATATAAAAGACAAAAAATGAAATTGAAAGCTGTATCTTTTATTACT
TTATCATTTTTATATTTTTTTTTTAATCTAACATAATAACTTTAC
Right flanking sequence: Indices 300778 -- 301277
GAAGATATATAAATTCAAAATTAGTACATAAAACAAATATAATACTGAATCCGAAACAAATATCT
AAAAATACACTTTTTCTTATGTTGAAGTAAAGAAAAAAAAACTTATTTATGTATTTATGTTAAAC
TTATTTATGTATTTATGTTAAAGTAAAATAAAGATTAATTATTAAAAATAAATATTAATTATTAA
AATAAATATTAATTATTAATAAATATTACTAATATTACTAAAACTAAAAAAGGAGCAATACCCAA
TTTCTTGTTCTATCAAGAAGCTTGGTATTGCTCCCCTTTTTAGCTTTTTTTTCAAAAACTCATAC
ACACTAAGGCCGAAGTATTATCCATTTATAGATGGAGCTTCGACAGCAGCTAGGTCTAGAGGGAA
GTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATAATATCCGCCC
AGGTATTAATTACACGACCTTGACTATCAACTACGGATTGGTTAA
Found at i:300908 original size:23 final size:23
Alignment explanation
Indices: 300881--300929 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
300871 AAAGAAAAAA
300881 AAACTTATTTATGTATTTATGTT
1 AAACTTATTTATGTATTTATGTT
300904 AAACTTATTTATGTATTTATGTT
1 AAACTTATTTATGTATTTATGTT
300927 AAA
1 AAA
300930 GTAAAATAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.35, C:0.04, G:0.08, T:0.53
Consensus pattern (23 bp):
AAACTTATTTATGTATTTATGTT
Left flanking sequence: Indices 300381 -- 300880
TACGAAGAAACACTTATGATAGATTTCTATTTCTGATAGATTTATATTTCATATTTTTTTTTTTT
TTTTTTTATTGGGGTTATGGGCGAAGTGGTTACGGGCGAACGACGGGAATTGAACCCGCACATGG
TGGATTCACAATCCACTGCCTTGAGCCACTTGGCTACATCCGCCCCTAATATTATATTCTATTTA
CAAATTAAAAAGATTTGTAATTTCTAGCATTTACCATTCTATTTTTTCTTTATTATAAAAACGAA
ATACAAAAAGAAAATATAAAAGACAAAAAATGAAATTGAAAGCTGTATCTTTTATTACTTTATCA
TTTTTATATTTTTTTTTTAATCTAACATAATAACTTTACAAAAAAAAGATTAAAAAAACAAAAGA
TTGAAAAGAAGATATATAAATTCAAAATTAGTACATAAAACAAATATAATACTGAATCCGAAACA
AATATCTAAAAATACACTTTTTCTTATGTTGAAGTAAAGAAAAAA
Right flanking sequence: Indices 300930 -- 301429
GTAAAATAAAGATTAATTATTAAAAATAAATATTAATTATTAAAATAAATATTAATTATTAATAA
ATATTACTAATATTACTAAAACTAAAAAAGGAGCAATACCCAATTTCTTGTTCTATCAAGAAGCT
TGGTATTGCTCCCCTTTTTAGCTTTTTTTTCAAAAACTCATACACACTAAGGCCGAAGTATTATC
CATTTATAGATGGAGCTTCGACAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGC
ATAACTTCCATACCAAGGTTAGCACGGTTAATAATATCCGCCCAGGTATTAATTACACGACCTTG
ACTATCAACTACGGATTGGTTAAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTA
AAGCAGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTA
TTGAAACTAGCATATTGGAAAATCAATCGGCCAAAATAACCATGA
Found at i:300976 original size:19 final size:19
Alignment explanation
Indices: 300931--301000 Score: 108
Period size: 19 Copynumber: 3.7 Consensus size: 19
300921 TATGTTAAAG
*
300931 TAAAATAAAGATTAATTAT
1 TAAAATAAATATTAATTAT
300950 TAAAAATAAATATTAATTAT
1 T-AAAATAAATATTAATTAT
300970 TAAAATAAATATTAATTAT
1 TAAAATAAATATTAATTAT
300989 T--AATAAATATTA
1 TAAAATAAATATTA
301001 CTAATATTAC
Statistics
Matches: 49, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
17 11 0.22
19 20 0.41
20 18 0.37
ACGTcount: A:0.59, C:0.00, G:0.01, T:0.40
Consensus pattern (19 bp):
TAAAATAAATATTAATTAT
Left flanking sequence: Indices 300431 -- 300930
ATATTTTTTTTTTTTTTTTTTTATTGGGGTTATGGGCGAAGTGGTTACGGGCGAACGACGGGAAT
TGAACCCGCACATGGTGGATTCACAATCCACTGCCTTGAGCCACTTGGCTACATCCGCCCCTAAT
ATTATATTCTATTTACAAATTAAAAAGATTTGTAATTTCTAGCATTTACCATTCTATTTTTTCTT
TATTATAAAAACGAAATACAAAAAGAAAATATAAAAGACAAAAAATGAAATTGAAAGCTGTATCT
TTTATTACTTTATCATTTTTATATTTTTTTTTTAATCTAACATAATAACTTTACAAAAAAAAGAT
TAAAAAAACAAAAGATTGAAAAGAAGATATATAAATTCAAAATTAGTACATAAAACAAATATAAT
ACTGAATCCGAAACAAATATCTAAAAATACACTTTTTCTTATGTTGAAGTAAAGAAAAAAAAACT
TATTTATGTATTTATGTTAAACTTATTTATGTATTTATGTTAAAG
Right flanking sequence: Indices 301001 -- 301500
CTAATATTACTAAAACTAAAAAAGGAGCAATACCCAATTTCTTGTTCTATCAAGAAGCTTGGTAT
TGCTCCCCTTTTTAGCTTTTTTTTCAAAAACTCATACACACTAAGGCCGAAGTATTATCCATTTA
TAGATGGAGCTTCGACAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACT
TCCATACCAAGGTTAGCACGGTTAATAATATCCGCCCAGGTATTAATTACACGACCTTGACTATC
AACTACGGATTGGTTAAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAG
TGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTATTGAAA
CTAGCATATTGGAAAATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTTTCTTC
CTCTTGACCGAATCTGTAACCTTCATTAGCGGATTCATTTTCTGT
Found at i:304880 original size:16 final size:16
Alignment explanation
Indices: 304859--304890 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
304849 TCGACCCAAT
304859 CTTCAATTCATTTTTG
1 CTTCAATTCATTTTTG
304875 CTTCAATTCATTTTTG
1 CTTCAATTCATTTTTG
304891 AATGTTCTGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.19, G:0.06, T:0.56
Consensus pattern (16 bp):
CTTCAATTCATTTTTG
Left flanking sequence: Indices 304359 -- 304858
GGGGTTTATTATTATTAAATAAATGATACATAGTGCGATAGAACAAAAACAAAGGAGTATAATAA
AAAAAGAATAGATACTTCGGAAACAGATAAACTCATATACAGACTCTCGATCCCTTATTTTTTTT
CATTTTTTTCATCTAATTACTTTATGTTCATTATAGAATAAAATTAAAATAAGAAGATGGTTAGA
AATCCTTTACTTTTTCAAGTCAATCGCTCTTGTGATTTTTGTTTAAAAAAAAAATTCTTTATCAC
TATACTCTTTCTTTTACACATTCATCTCCGCGCATAGTGGCGAATAACTAATACTTAGGGCTCAT
TCAAAAAATAGAAAATCTGCTCATGGAAAAACCTTTCCCGCATCAGGCACTAATATATTTTTAAC
GTCTAATTAAATCGGATAATCGTTCCAATTAAGAACGGAAGCTCGTAACTTTTTTGTTTCCCTAT
AATTGGAGCCGGGGGGCTCTATCCATTTATTCCACTCGACCCAAT
Right flanking sequence: Indices 304891 -- 305390
AATGTTCTGCATCAAGAATGAAAACAAGGTTAGTAACTGATCCAGTAAAAATGAAATATTCTCAG
AATTCGACATTGATACGACATGCTGTTTTTTCCATTCATTCCTTTCAAGATCAGTCGTGGTCTTA
CAAACTATACCGATGGTATGGACGAATCTCTTTATTCATACAAATGCGTAAAAGATGTTAGTCGC
ACTTAAAAGCCGAGTACTCTACCATTGAGTTAGCAACCCAAAAAAGGACTAAAAAAATTAGGTTA
TATAGATACAATCAGAATCAAAATAAATAAAGAGATTGAATCGTATGACACAATCAAAACATTAA
ATTAGAAAGAAAGAACCAAGAAATGAAATAATTTATAATGGATTCTGAACATAAAAAAAAGATCA
GCTAAAAATAAAAATAAAAGAAATTCTCAAAAAAATCTCAATTCAAATAGAAAAAAAAAAAATAA
GAATAAAGTAAGTAAAATAAGCAAATGCAAAGTATATAAAAGTGT
Found at i:305402 original size:6 final size:6
Alignment explanation
Indices: 305391--305464 Score: 57
Period size: 6 Copynumber: 12.8 Consensus size: 6
305381 ATAAAAGTGT
* * *
305391 AAATAA AAAT-A AAATAA AAAT-- AAAT-A AAATAA AAGTAT AAATCA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA AAATAA
* * *
305435 AAATAA AAGTAT AAATCA AAATATA AAATA
1 AAATAA AAATAA AAATAA AAATA-A AAATA
305465 TATAGATATT
Statistics
Matches: 52, Mismatches: 12, Indels: 7
0.73 0.17 0.10
Matches are distributed among these distances:
4 4 0.08
5 9 0.17
6 33 0.63
7 6 0.12
ACGTcount: A:0.73, C:0.03, G:0.03, T:0.22
Consensus pattern (6 bp):
AAATAA
Left flanking sequence: Indices 304891 -- 305390
AATGTTCTGCATCAAGAATGAAAACAAGGTTAGTAACTGATCCAGTAAAAATGAAATATTCTCAG
AATTCGACATTGATACGACATGCTGTTTTTTCCATTCATTCCTTTCAAGATCAGTCGTGGTCTTA
CAAACTATACCGATGGTATGGACGAATCTCTTTATTCATACAAATGCGTAAAAGATGTTAGTCGC
ACTTAAAAGCCGAGTACTCTACCATTGAGTTAGCAACCCAAAAAAGGACTAAAAAAATTAGGTTA
TATAGATACAATCAGAATCAAAATAAATAAAGAGATTGAATCGTATGACACAATCAAAACATTAA
ATTAGAAAGAAAGAACCAAGAAATGAAATAATTTATAATGGATTCTGAACATAAAAAAAAGATCA
GCTAAAAATAAAAATAAAAGAAATTCTCAAAAAAATCTCAATTCAAATAGAAAAAAAAAAAATAA
GAATAAAGTAAGTAAAATAAGCAAATGCAAAGTATATAAAAGTGT
Right flanking sequence: Indices 305465 -- 305964
TATAGATATTTATATATATATATATTAGATATTAGTATATATTATTTATATTTGTATTTATATTA
TTATATATATTAGATATTAGTATATATTATTTATATTTGTATTTATATTATTTGTATTTATATTT
GTTTATTTTGTTTTGTATTCATATTTGTTTATATTTTTTTTATATTTTTATATTTGTATATTTTT
ATATTTGAATTTGAATTGAGTTTCGGTTTGAATTTATCGATTTTATTTATTTTATTTAAAATTAG
AATTTATCAATTTCTATTTCTATCAATTTATATTTGTATTTTATCAGTTTATATTATATATTAAA
ATTATATATTAAATTTATATTCTATATTTATATATTATTTATATATTAATATATTATATATTTAT
ATATTATATATTATAATATTATAAAATATATTTATATATTATTTATTATTTATATTATTTATATA
AAATATATTTATATATTATTTATTATTTATATTATTTATATTTAT
Found at i:305404 original size:18 final size:19
Alignment explanation
Indices: 305381--305466 Score: 81
Period size: 18 Copynumber: 4.6 Consensus size: 19
305371 TGCAAAGTAT
*
305381 ATAAAAGTGTAAAT-AAAA
1 ATAAAAGTATAAATAAAAA
*
305399 ATAAAA-TAAAAATAAATAAA
1 ATAAAAGTATAAAT-AA-AAA
*
305419 ATAAAAGTATAAAT-CAAA
1 ATAAAAGTATAAATAAAAA
*
305437 ATAAAAGTATAAATCAAAAT
1 ATAAAAGTATAAAT-AAAAA
305457 ATAAAA-TATA
1 ATAAAAGTATA
305467 TAGATATTTA
Statistics
Matches: 56, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
17 5 0.09
18 23 0.41
19 5 0.09
20 17 0.30
21 6 0.11
ACGTcount: A:0.70, C:0.02, G:0.05, T:0.23
Consensus pattern (19 bp):
ATAAAAGTATAAATAAAAA
Left flanking sequence: Indices 304881 -- 305380
TTCATTTTTGAATGTTCTGCATCAAGAATGAAAACAAGGTTAGTAACTGATCCAGTAAAAATGAA
ATATTCTCAGAATTCGACATTGATACGACATGCTGTTTTTTCCATTCATTCCTTTCAAGATCAGT
CGTGGTCTTACAAACTATACCGATGGTATGGACGAATCTCTTTATTCATACAAATGCGTAAAAGA
TGTTAGTCGCACTTAAAAGCCGAGTACTCTACCATTGAGTTAGCAACCCAAAAAAGGACTAAAAA
AATTAGGTTATATAGATACAATCAGAATCAAAATAAATAAAGAGATTGAATCGTATGACACAATC
AAAACATTAAATTAGAAAGAAAGAACCAAGAAATGAAATAATTTATAATGGATTCTGAACATAAA
AAAAAGATCAGCTAAAAATAAAAATAAAAGAAATTCTCAAAAAAATCTCAATTCAAATAGAAAAA
AAAAAAATAAGAATAAAGTAAGTAAAATAAGCAAATGCAAAGTAT
Right flanking sequence: Indices 305467 -- 305966
TAGATATTTATATATATATATATTAGATATTAGTATATATTATTTATATTTGTATTTATATTATT
ATATATATTAGATATTAGTATATATTATTTATATTTGTATTTATATTATTTGTATTTATATTTGT
TTATTTTGTTTTGTATTCATATTTGTTTATATTTTTTTTATATTTTTATATTTGTATATTTTTAT
ATTTGAATTTGAATTGAGTTTCGGTTTGAATTTATCGATTTTATTTATTTTATTTAAAATTAGAA
TTTATCAATTTCTATTTCTATCAATTTATATTTGTATTTTATCAGTTTATATTATATATTAAAAT
TATATATTAAATTTATATTCTATATTTATATATTATTTATATATTAATATATTATATATTTATAT
ATTATATATTATAATATTATAAAATATATTTATATATTATTTATTATTTATATTATTTATATAAA
ATATATTTATATATTATTTATTATTTATATTATTTATATTTATAT
Found at i:305406 original size:5 final size:5
Alignment explanation
Indices: 305391--305457 Score: 55
Period size: 5 Copynumber: 12.0 Consensus size: 5
305381 ATAAAAGTGT
305391 AAATAA AAATA AAATA AAA-A TAAATA AAATA AAAGTA TAAATCA AAATA
1 AAAT-A AAATA AAATA AAATA -AAATA AAATA AAA-TA -AAAT-A AAATA
305440 AAAGTA TAAATCA AAATA
1 AAA-TA -AAAT-A AAATA
305458 TAAAATATAT
Statistics
Matches: 53, Mismatches: 0, Indels: 17
0.76 0.00 0.24
Matches are distributed among these distances:
4 1 0.02
5 25 0.47
6 19 0.36
7 8 0.15
ACGTcount: A:0.73, C:0.03, G:0.03, T:0.21
Consensus pattern (5 bp):
AAATA
Left flanking sequence: Indices 304891 -- 305390
AATGTTCTGCATCAAGAATGAAAACAAGGTTAGTAACTGATCCAGTAAAAATGAAATATTCTCAG
AATTCGACATTGATACGACATGCTGTTTTTTCCATTCATTCCTTTCAAGATCAGTCGTGGTCTTA
CAAACTATACCGATGGTATGGACGAATCTCTTTATTCATACAAATGCGTAAAAGATGTTAGTCGC
ACTTAAAAGCCGAGTACTCTACCATTGAGTTAGCAACCCAAAAAAGGACTAAAAAAATTAGGTTA
TATAGATACAATCAGAATCAAAATAAATAAAGAGATTGAATCGTATGACACAATCAAAACATTAA
ATTAGAAAGAAAGAACCAAGAAATGAAATAATTTATAATGGATTCTGAACATAAAAAAAAGATCA
GCTAAAAATAAAAATAAAAGAAATTCTCAAAAAAATCTCAATTCAAATAGAAAAAAAAAAAATAA
GAATAAAGTAAGTAAAATAAGCAAATGCAAAGTATATAAAAGTGT
Right flanking sequence: Indices 305458 -- 305957
TAAAATATATAGATATTTATATATATATATATTAGATATTAGTATATATTATTTATATTTGTATT
TATATTATTATATATATTAGATATTAGTATATATTATTTATATTTGTATTTATATTATTTGTATT
TATATTTGTTTATTTTGTTTTGTATTCATATTTGTTTATATTTTTTTTATATTTTTATATTTGTA
TATTTTTATATTTGAATTTGAATTGAGTTTCGGTTTGAATTTATCGATTTTATTTATTTTATTTA
AAATTAGAATTTATCAATTTCTATTTCTATCAATTTATATTTGTATTTTATCAGTTTATATTATA
TATTAAAATTATATATTAAATTTATATTCTATATTTATATATTATTTATATATTAATATATTATA
TATTTATATATTATATATTATAATATTATAAAATATATTTATATATTATTTATTATTTATATTAT
TTATATAAAATATATTTATATATTATTTATTATTTATATTATTTA
Found at i:305461 original size:38 final size:38
Alignment explanation
Indices: 305379--305466 Score: 108
Period size: 38 Copynumber: 2.3 Consensus size: 38
305369 AATGCAAAGT
*
305379 ATATAAAAGTGTAAATAAAAATAAAATAAAAATAAATA
1 ATATAAAAGTATAAATAAAAATAAAATAAAAATAAATA
* * * *
305417 AAATAAAAGTATAAATCAAAATAAAAGTATAAATCAA-A
1 ATATAAAAGTATAAATAAAAATAAAA-TAAAAATAAATA
305455 ATATAAAA-TATA
1 ATATAAAAGTATA
305467 TAGATATTTA
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
37 4 0.09
38 31 0.72
39 8 0.19
ACGTcount: A:0.69, C:0.02, G:0.05, T:0.24
Consensus pattern (38 bp):
ATATAAAAGTATAAATAAAAATAAAATAAAAATAAATA
Left flanking sequence: Indices 304879 -- 305378
AATTCATTTTTGAATGTTCTGCATCAAGAATGAAAACAAGGTTAGTAACTGATCCAGTAAAAATG
AAATATTCTCAGAATTCGACATTGATACGACATGCTGTTTTTTCCATTCATTCCTTTCAAGATCA
GTCGTGGTCTTACAAACTATACCGATGGTATGGACGAATCTCTTTATTCATACAAATGCGTAAAA
GATGTTAGTCGCACTTAAAAGCCGAGTACTCTACCATTGAGTTAGCAACCCAAAAAAGGACTAAA
AAAATTAGGTTATATAGATACAATCAGAATCAAAATAAATAAAGAGATTGAATCGTATGACACAA
TCAAAACATTAAATTAGAAAGAAAGAACCAAGAAATGAAATAATTTATAATGGATTCTGAACATA
AAAAAAAGATCAGCTAAAAATAAAAATAAAAGAAATTCTCAAAAAAATCTCAATTCAAATAGAAA
AAAAAAAAATAAGAATAAAGTAAGTAAAATAAGCAAATGCAAAGT
Right flanking sequence: Indices 305467 -- 305966
TAGATATTTATATATATATATATTAGATATTAGTATATATTATTTATATTTGTATTTATATTATT
ATATATATTAGATATTAGTATATATTATTTATATTTGTATTTATATTATTTGTATTTATATTTGT
TTATTTTGTTTTGTATTCATATTTGTTTATATTTTTTTTATATTTTTATATTTGTATATTTTTAT
ATTTGAATTTGAATTGAGTTTCGGTTTGAATTTATCGATTTTATTTATTTTATTTAAAATTAGAA
TTTATCAATTTCTATTTCTATCAATTTATATTTGTATTTTATCAGTTTATATTATATATTAAAAT
TATATATTAAATTTATATTCTATATTTATATATTATTTATATATTAATATATTATATATTTATAT
ATTATATATTATAATATTATAAAATATATTTATATATTATTTATTATTTATATTATTTATATAAA
ATATATTTATATATTATTTATTATTTATATTATTTATATTTATAT
Found at i:305480 original size:2 final size:2
Alignment explanation
Indices: 305462--305565 Score: 53
Period size: 2 Copynumber: 55.0 Consensus size: 2
305452 AAAATATAAA
* * *
305462 AT AT AT AG AT AT TT AT AT AT AT AT AT AT -T AG AT AT -T AGT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT
* * * *
305503 AT AT -T AT TT AT AT TT GT AT TT AT AT -T AT -T AT AT AT AT -T
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
305541 AG AT AT -T AGT AT AT AT -T AT TT AT AT
1 AT AT AT AT A-T AT AT AT AT AT AT AT AT
305566 TTGTATTTAT
Statistics
Matches: 75, Mismatches: 17, Indels: 20
0.67 0.15 0.18
Matches are distributed among these distances:
1 8 0.11
2 63 0.84
3 4 0.05
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.55
Consensus pattern (2 bp):
AT
Left flanking sequence: Indices 304962 -- 305461
ACATTGATACGACATGCTGTTTTTTCCATTCATTCCTTTCAAGATCAGTCGTGGTCTTACAAACT
ATACCGATGGTATGGACGAATCTCTTTATTCATACAAATGCGTAAAAGATGTTAGTCGCACTTAA
AAGCCGAGTACTCTACCATTGAGTTAGCAACCCAAAAAAGGACTAAAAAAATTAGGTTATATAGA
TACAATCAGAATCAAAATAAATAAAGAGATTGAATCGTATGACACAATCAAAACATTAAATTAGA
AAGAAAGAACCAAGAAATGAAATAATTTATAATGGATTCTGAACATAAAAAAAAGATCAGCTAAA
AATAAAAATAAAAGAAATTCTCAAAAAAATCTCAATTCAAATAGAAAAAAAAAAAATAAGAATAA
AGTAAGTAAAATAAGCAAATGCAAAGTATATAAAAGTGTAAATAAAAATAAAATAAAAATAAATA
AAATAAAAGTATAAATCAAAATAAAAGTATAAATCAAAATATAAA
Right flanking sequence: Indices 305566 -- 306065
TTGTATTTATATTATTTGTATTTATATTTGTTTATTTTGTTTTGTATTCATATTTGTTTATATTT
TTTTTATATTTTTATATTTGTATATTTTTATATTTGAATTTGAATTGAGTTTCGGTTTGAATTTA
TCGATTTTATTTATTTTATTTAAAATTAGAATTTATCAATTTCTATTTCTATCAATTTATATTTG
TATTTTATCAGTTTATATTATATATTAAAATTATATATTAAATTTATATTCTATATTTATATATT
ATTTATATATTAATATATTATATATTTATATATTATATATTATAATATTATAAAATATATTTATA
TATTATTTATTATTTATATTATTTATATAAAATATATTTATATATTATTTATTATTTATATTATT
TATATTTATATTATTTATGATTTTTTAGATAAAATATATTTATATATTATTTATTATTTATATTA
TATTATTTATTATTTATATTATTTATTTATATTATTTATGATTTT
Found at i:305503 original size:17 final size:17
Alignment explanation
Indices: 305483--305558 Score: 77
Period size: 17 Copynumber: 4.5 Consensus size: 17
305473 TTTATATATA
305483 TATATATTAGATATTAG
1 TATATATTAGATATTAG
* *
305500 TATATATTATTTATATTTG
1 TATATATTA--GATATTAG
* *
305519 TATTTA-TA-TTATTA-
1 TATATATTAGATATTAG
305533 TATATATTAGATATTAG
1 TATATATTAGATATTAG
305550 TATATATTA
1 TATATATTA
305559 TTTATATTTG
Statistics
Matches: 47, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
14 5 0.11
15 6 0.13
16 5 0.11
17 18 0.38
18 2 0.04
19 11 0.23
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (17 bp):
TATATATTAGATATTAG
Left flanking sequence: Indices 304983 -- 305482
TTTTCCATTCATTCCTTTCAAGATCAGTCGTGGTCTTACAAACTATACCGATGGTATGGACGAAT
CTCTTTATTCATACAAATGCGTAAAAGATGTTAGTCGCACTTAAAAGCCGAGTACTCTACCATTG
AGTTAGCAACCCAAAAAAGGACTAAAAAAATTAGGTTATATAGATACAATCAGAATCAAAATAAA
TAAAGAGATTGAATCGTATGACACAATCAAAACATTAAATTAGAAAGAAAGAACCAAGAAATGAA
ATAATTTATAATGGATTCTGAACATAAAAAAAAGATCAGCTAAAAATAAAAATAAAAGAAATTCT
CAAAAAAATCTCAATTCAAATAGAAAAAAAAAAAATAAGAATAAAGTAAGTAAAATAAGCAAATG
CAAAGTATATAAAAGTGTAAATAAAAATAAAATAAAAATAAATAAAATAAAAGTATAAATCAAAA
TAAAAGTATAAATCAAAATATAAAATATATAGATATTTATATATA
Right flanking sequence: Indices 305559 -- 306058
TTTATATTTGTATTTATATTATTTGTATTTATATTTGTTTATTTTGTTTTGTATTCATATTTGTT
TATATTTTTTTTATATTTTTATATTTGTATATTTTTATATTTGAATTTGAATTGAGTTTCGGTTT
GAATTTATCGATTTTATTTATTTTATTTAAAATTAGAATTTATCAATTTCTATTTCTATCAATTT
ATATTTGTATTTTATCAGTTTATATTATATATTAAAATTATATATTAAATTTATATTCTATATTT
ATATATTATTTATATATTAATATATTATATATTTATATATTATATATTATAATATTATAAAATAT
ATTTATATATTATTTATTATTTATATTATTTATATAAAATATATTTATATATTATTTATTATTTA
TATTATTTATATTTATATTATTTATGATTTTTTAGATAAAATATATTTATATATTATTTATTATT
TATATTATATTATTTATTATTTATATTATTTATTTATATTATTTA
Found at i:305505 original size:19 final size:18
Alignment explanation
Indices: 305481--305578 Score: 71
Period size: 19 Copynumber: 5.6 Consensus size: 18
305471 TATTTATATA
305481 TATATATATTAGATATTAG
1 TATATATATT-GATATTAG
* *
305500 TATATATTATTTATATTTG
1 TATATA-TATTGATATTAG
*
305519 TATTTATA-T--TATTA-
1 TATATATATTGATATTAG
*
305533 TATATAT-TAGATATTAG
1 TATATATATTGATATTAG
* *
305550 TATATATTATTTATATTTG
1 TATATA-TATTGATATTAG
*
305569 TATTTATATT
1 TATATATATT
305579 ATTTGTATTT
Statistics
Matches: 62, Mismatches: 10, Indels: 15
0.71 0.11 0.17
Matches are distributed among these distances:
14 6 0.10
15 4 0.06
16 5 0.08
17 7 0.11
18 7 0.11
19 29 0.47
20 4 0.06
ACGTcount: A:0.36, C:0.00, G:0.06, T:0.58
Consensus pattern (18 bp):
TATATATATTGATATTAG
Left flanking sequence: Indices 304981 -- 305480
TTTTTTCCATTCATTCCTTTCAAGATCAGTCGTGGTCTTACAAACTATACCGATGGTATGGACGA
ATCTCTTTATTCATACAAATGCGTAAAAGATGTTAGTCGCACTTAAAAGCCGAGTACTCTACCAT
TGAGTTAGCAACCCAAAAAAGGACTAAAAAAATTAGGTTATATAGATACAATCAGAATCAAAATA
AATAAAGAGATTGAATCGTATGACACAATCAAAACATTAAATTAGAAAGAAAGAACCAAGAAATG
AAATAATTTATAATGGATTCTGAACATAAAAAAAAGATCAGCTAAAAATAAAAATAAAAGAAATT
CTCAAAAAAATCTCAATTCAAATAGAAAAAAAAAAAATAAGAATAAAGTAAGTAAAATAAGCAAA
TGCAAAGTATATAAAAGTGTAAATAAAAATAAAATAAAAATAAATAAAATAAAAGTATAAATCAA
AATAAAAGTATAAATCAAAATATAAAATATATAGATATTTATATA
Right flanking sequence: Indices 305579 -- 306078
ATTTGTATTTATATTTGTTTATTTTGTTTTGTATTCATATTTGTTTATATTTTTTTTATATTTTT
ATATTTGTATATTTTTATATTTGAATTTGAATTGAGTTTCGGTTTGAATTTATCGATTTTATTTA
TTTTATTTAAAATTAGAATTTATCAATTTCTATTTCTATCAATTTATATTTGTATTTTATCAGTT
TATATTATATATTAAAATTATATATTAAATTTATATTCTATATTTATATATTATTTATATATTAA
TATATTATATATTTATATATTATATATTATAATATTATAAAATATATTTATATATTATTTATTAT
TTATATTATTTATATAAAATATATTTATATATTATTTATTATTTATATTATTTATATTTATATTA
TTTATGATTTTTTAGATAAAATATATTTATATATTATTTATTATTTATATTATATTATTTATTAT
TTATATTATTTATTTATATTATTTATGATTTTTTAGAAATTATTT
Found at i:305524 original size:12 final size:12
Alignment explanation
Indices: 305507--305641 Score: 84
Period size: 12 Copynumber: 10.9 Consensus size: 12
305497 TAGTATATAT
305507 TATTTATATTTG
1 TATTTATATTTG
305519 TATTTATATTAT-
1 TATTTATATT-TG
* *
305531 TATATATATTAG
1 TATTTATATTTG
*
305543 ATATTAGTATATAT-
1 -TATT--TATATTTG
305557 TATTTATATTTG
1 TATTTATATTTG
305569 TATTTATATTATTTG
1 TA-TT-TA-TATTTG
305584 TATTTATATTTG
1 TATTTATATTTG
*
305596 TTTATTT-TGTTTTG
1 --TATTTAT-ATTTG
*
305610 TATTCATATTTG
1 TATTTATATTTG
305622 --TTTATATTT-
1 TATTTATATTTG
*
305631 TTTTTATATTT
1 TATTTATATTT
305642 TTATATTTGT
Statistics
Matches: 98, Mismatches: 10, Indels: 31
0.71 0.07 0.22
Matches are distributed among these distances:
10 8 0.08
11 15 0.15
12 35 0.36
13 14 0.14
14 13 0.13
15 13 0.13
ACGTcount: A:0.27, C:0.01, G:0.07, T:0.66
Consensus pattern (12 bp):
TATTTATATTTG
Left flanking sequence: Indices 305007 -- 305506
CAGTCGTGGTCTTACAAACTATACCGATGGTATGGACGAATCTCTTTATTCATACAAATGCGTAA
AAGATGTTAGTCGCACTTAAAAGCCGAGTACTCTACCATTGAGTTAGCAACCCAAAAAAGGACTA
AAAAAATTAGGTTATATAGATACAATCAGAATCAAAATAAATAAAGAGATTGAATCGTATGACAC
AATCAAAACATTAAATTAGAAAGAAAGAACCAAGAAATGAAATAATTTATAATGGATTCTGAACA
TAAAAAAAAGATCAGCTAAAAATAAAAATAAAAGAAATTCTCAAAAAAATCTCAATTCAAATAGA
AAAAAAAAAAATAAGAATAAAGTAAGTAAAATAAGCAAATGCAAAGTATATAAAAGTGTAAATAA
AAATAAAATAAAAATAAATAAAATAAAAGTATAAATCAAAATAAAAGTATAAATCAAAATATAAA
ATATATAGATATTTATATATATATATATTAGATATTAGTATATAT
Right flanking sequence: Indices 305642 -- 306141
TTATATTTGTATATTTTTATATTTGAATTTGAATTGAGTTTCGGTTTGAATTTATCGATTTTATT
TATTTTATTTAAAATTAGAATTTATCAATTTCTATTTCTATCAATTTATATTTGTATTTTATCAG
TTTATATTATATATTAAAATTATATATTAAATTTATATTCTATATTTATATATTATTTATATATT
AATATATTATATATTTATATATTATATATTATAATATTATAAAATATATTTATATATTATTTATT
ATTTATATTATTTATATAAAATATATTTATATATTATTTATTATTTATATTATTTATATTTATAT
TATTTATGATTTTTTAGATAAAATATATTTATATATTATTTATTATTTATATTATATTATTTATT
ATTTATATTATTTATTTATATTATTTATGATTTTTTAGAAATTATTTTTTATAATTTTTATAATT
ATTATTATAATTATTATATAGATAGATAATTACTATATATACTAT
Found at i:305551 original size:50 final size:50
Alignment explanation
Indices: 305471--305581 Score: 208
Period size: 50 Copynumber: 2.3 Consensus size: 50
305461 AATATATAGA
305471 TATTTATA-TA-TATATATATTAGATATTAGTATATATTATTTATATTTG
1 TATTTATATTATTATATATATTAGATATTAGTATATATTATTTATATTTG
305519 TATTTATATTATTATATATATTAGATATTAGTATATATTATTTATATTTG
1 TATTTATATTATTATATATATTAGATATTAGTATATATTATTTATATTTG
305569 TATTTATATTATT
1 TATTTATATTATT
305582 TGTATTTATA
Statistics
Matches: 61, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
48 8 0.13
49 2 0.03
50 51 0.84
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (50 bp):
TATTTATATTATTATATATATTAGATATTAGTATATATTATTTATATTTG
Left flanking sequence: Indices 304971 -- 305470
CGACATGCTGTTTTTTCCATTCATTCCTTTCAAGATCAGTCGTGGTCTTACAAACTATACCGATG
GTATGGACGAATCTCTTTATTCATACAAATGCGTAAAAGATGTTAGTCGCACTTAAAAGCCGAGT
ACTCTACCATTGAGTTAGCAACCCAAAAAAGGACTAAAAAAATTAGGTTATATAGATACAATCAG
AATCAAAATAAATAAAGAGATTGAATCGTATGACACAATCAAAACATTAAATTAGAAAGAAAGAA
CCAAGAAATGAAATAATTTATAATGGATTCTGAACATAAAAAAAAGATCAGCTAAAAATAAAAAT
AAAAGAAATTCTCAAAAAAATCTCAATTCAAATAGAAAAAAAAAAAATAAGAATAAAGTAAGTAA
AATAAGCAAATGCAAAGTATATAAAAGTGTAAATAAAAATAAAATAAAAATAAATAAAATAAAAG
TATAAATCAAAATAAAAGTATAAATCAAAATATAAAATATATAGA
Right flanking sequence: Indices 305582 -- 306081
TGTATTTATATTTGTTTATTTTGTTTTGTATTCATATTTGTTTATATTTTTTTTATATTTTTATA
TTTGTATATTTTTATATTTGAATTTGAATTGAGTTTCGGTTTGAATTTATCGATTTTATTTATTT
TATTTAAAATTAGAATTTATCAATTTCTATTTCTATCAATTTATATTTGTATTTTATCAGTTTAT
ATTATATATTAAAATTATATATTAAATTTATATTCTATATTTATATATTATTTATATATTAATAT
ATTATATATTTATATATTATATATTATAATATTATAAAATATATTTATATATTATTTATTATTTA
TATTATTTATATAAAATATATTTATATATTATTTATTATTTATATTATTTATATTTATATTATTT
ATGATTTTTTAGATAAAATATATTTATATATTATTTATTATTTATATTATATTATTTATTATTTA
TATTATTTATTTATATTATTTATGATTTTTTAGAAATTATTTTTT
Found at i:305576 original size:21 final size:21
Alignment explanation
Indices: 305552--305653 Score: 95
Period size: 21 Copynumber: 5.0 Consensus size: 21
305542 GATATTAGTA
305552 TATATTATTTATATTTGTATT
1 TATATTATTTATATTTGTATT
* *
305573 TATATTATTTGTATTTATATT
1 TATATTATTTATATTTGTATT
* *
305594 TGT-TTATTT-TGTTTTGTATT
1 TATATTATTTAT-ATTTGTATT
* * *
305614 CATATTTGTTTATATTT-TTTT
1 TATA-TTATTTATATTTGTATT
305635 TATATT-TTTATATTTGTAT
1 TATATTATTTATATTTGTAT
305654 ATTTTTATAT
Statistics
Matches: 64, Mismatches: 12, Indels: 11
0.74 0.14 0.13
Matches are distributed among these distances:
19 10 0.16
20 18 0.28
21 27 0.42
22 8 0.12
23 1 0.02
ACGTcount: A:0.23, C:0.01, G:0.07, T:0.70
Consensus pattern (21 bp):
TATATTATTTATATTTGTATT
Left flanking sequence: Indices 305052 -- 305551
TTATTCATACAAATGCGTAAAAGATGTTAGTCGCACTTAAAAGCCGAGTACTCTACCATTGAGTT
AGCAACCCAAAAAAGGACTAAAAAAATTAGGTTATATAGATACAATCAGAATCAAAATAAATAAA
GAGATTGAATCGTATGACACAATCAAAACATTAAATTAGAAAGAAAGAACCAAGAAATGAAATAA
TTTATAATGGATTCTGAACATAAAAAAAAGATCAGCTAAAAATAAAAATAAAAGAAATTCTCAAA
AAAATCTCAATTCAAATAGAAAAAAAAAAAATAAGAATAAAGTAAGTAAAATAAGCAAATGCAAA
GTATATAAAAGTGTAAATAAAAATAAAATAAAAATAAATAAAATAAAAGTATAAATCAAAATAAA
AGTATAAATCAAAATATAAAATATATAGATATTTATATATATATATATTAGATATTAGTATATAT
TATTTATATTTGTATTTATATTATTATATATATTAGATATTAGTA
Right flanking sequence: Indices 305654 -- 306153
ATTTTTATATTTGAATTTGAATTGAGTTTCGGTTTGAATTTATCGATTTTATTTATTTTATTTAA
AATTAGAATTTATCAATTTCTATTTCTATCAATTTATATTTGTATTTTATCAGTTTATATTATAT
ATTAAAATTATATATTAAATTTATATTCTATATTTATATATTATTTATATATTAATATATTATAT
ATTTATATATTATATATTATAATATTATAAAATATATTTATATATTATTTATTATTTATATTATT
TATATAAAATATATTTATATATTATTTATTATTTATATTATTTATATTTATATTATTTATGATTT
TTTAGATAAAATATATTTATATATTATTTATTATTTATATTATATTATTTATTATTTATATTATT
TATTTATATTATTTATGATTTTTTAGAAATTATTTTTTATAATTTTTATAATTATTATTATAATT
ATTATATAGATAGATAATTACTATATATACTATCTATATAGTATA
Found at i:305618 original size:26 final size:26
Alignment explanation
Indices: 305557--305658 Score: 98
Period size: 27 Copynumber: 3.8 Consensus size: 26
305547 TAGTATATAT
* *
305557 TATTTATATTTGTATTTATATT-ATTTG
1 TATTTATATTTG--TTTATTTTGTTTTG
305584 TATTTATATTTGTTTATTTTGTTTTG
1 TATTTATATTTGTTTATTTTGTTTTG
* * *
305610 TATTCATATTTGTTTATATTTTTTTTA
1 TATTTATATTTGTTTAT-TTTGTTTTG
*
305637 TATTTTTATATTTGTATATTTT
1 TA--TTTATATTTGTTTATTTT
305659 TATATTTGAA
Statistics
Matches: 64, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
25 7 0.11
26 20 0.31
27 21 0.33
28 3 0.05
29 13 0.20
ACGTcount: A:0.22, C:0.01, G:0.07, T:0.71
Consensus pattern (26 bp):
TATTTATATTTGTTTATTTTGTTTTG
Left flanking sequence: Indices 305057 -- 305556
CATACAAATGCGTAAAAGATGTTAGTCGCACTTAAAAGCCGAGTACTCTACCATTGAGTTAGCAA
CCCAAAAAAGGACTAAAAAAATTAGGTTATATAGATACAATCAGAATCAAAATAAATAAAGAGAT
TGAATCGTATGACACAATCAAAACATTAAATTAGAAAGAAAGAACCAAGAAATGAAATAATTTAT
AATGGATTCTGAACATAAAAAAAAGATCAGCTAAAAATAAAAATAAAAGAAATTCTCAAAAAAAT
CTCAATTCAAATAGAAAAAAAAAAAATAAGAATAAAGTAAGTAAAATAAGCAAATGCAAAGTATA
TAAAAGTGTAAATAAAAATAAAATAAAAATAAATAAAATAAAAGTATAAATCAAAATAAAAGTAT
AAATCAAAATATAAAATATATAGATATTTATATATATATATATTAGATATTAGTATATATTATTT
ATATTTGTATTTATATTATTATATATATTAGATATTAGTATATAT
Right flanking sequence: Indices 305659 -- 306158
TATATTTGAATTTGAATTGAGTTTCGGTTTGAATTTATCGATTTTATTTATTTTATTTAAAATTA
GAATTTATCAATTTCTATTTCTATCAATTTATATTTGTATTTTATCAGTTTATATTATATATTAA
AATTATATATTAAATTTATATTCTATATTTATATATTATTTATATATTAATATATTATATATTTA
TATATTATATATTATAATATTATAAAATATATTTATATATTATTTATTATTTATATTATTTATAT
AAAATATATTTATATATTATTTATTATTTATATTATTTATATTTATATTATTTATGATTTTTTAG
ATAAAATATATTTATATATTATTTATTATTTATATTATATTATTTATTATTTATATTATTTATTT
ATATTATTTATGATTTTTTAGAAATTATTTTTTATAATTTTTATAATTATTATTATAATTATTAT
ATAGATAGATAATTACTATATATACTATCTATATAGTATATAGAT
Found at i:305644 original size:8 final size:8
Alignment explanation
Indices: 305631--305665 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
305621 GTTTATATTT
305631 TTTTTATA
1 TTTTTATA
305639 TTTTTATA
1 TTTTTATA
*
305647 TTTGTATA
1 TTTTTATA
305655 TTTTTATA
1 TTTTTATA
305663 TTT
1 TTT
305666 GAATTTGAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (8 bp):
TTTTTATA
Left flanking sequence: Indices 305131 -- 305630
GGACTAAAAAAATTAGGTTATATAGATACAATCAGAATCAAAATAAATAAAGAGATTGAATCGTA
TGACACAATCAAAACATTAAATTAGAAAGAAAGAACCAAGAAATGAAATAATTTATAATGGATTC
TGAACATAAAAAAAAGATCAGCTAAAAATAAAAATAAAAGAAATTCTCAAAAAAATCTCAATTCA
AATAGAAAAAAAAAAAATAAGAATAAAGTAAGTAAAATAAGCAAATGCAAAGTATATAAAAGTGT
AAATAAAAATAAAATAAAAATAAATAAAATAAAAGTATAAATCAAAATAAAAGTATAAATCAAAA
TATAAAATATATAGATATTTATATATATATATATTAGATATTAGTATATATTATTTATATTTGTA
TTTATATTATTATATATATTAGATATTAGTATATATTATTTATATTTGTATTTATATTATTTGTA
TTTATATTTGTTTATTTTGTTTTGTATTCATATTTGTTTATATTT
Right flanking sequence: Indices 305666 -- 306165
GAATTTGAATTGAGTTTCGGTTTGAATTTATCGATTTTATTTATTTTATTTAAAATTAGAATTTA
TCAATTTCTATTTCTATCAATTTATATTTGTATTTTATCAGTTTATATTATATATTAAAATTATA
TATTAAATTTATATTCTATATTTATATATTATTTATATATTAATATATTATATATTTATATATTA
TATATTATAATATTATAAAATATATTTATATATTATTTATTATTTATATTATTTATATAAAATAT
ATTTATATATTATTTATTATTTATATTATTTATATTTATATTATTTATGATTTTTTAGATAAAAT
ATATTTATATATTATTTATTATTTATATTATATTATTTATTATTTATATTATTTATTTATATTAT
TTATGATTTTTTAGAAATTATTTTTTATAATTTTTATAATTATTATTATAATTATTATATAGATA
GATAATTACTATATATACTATCTATATAGTATATAGATTAGTATA
Found at i:305651 original size:41 final size:43
Alignment explanation
Indices: 305502--305653 Score: 125
Period size: 50 Copynumber: 3.4 Consensus size: 43
305492 GATATTAGTA
* *
305502 TATATTATTTATATTTGTATTTATATTATTATATATATTAGATATTAGTA
1 TATATT-TTTATATTTGTATTCATATTATT-TATAT-TT--ATATT--TG
* *
305552 TATATTATTTATATTTGTATTTATATTATTTGTATTTATATTTG
1 TATATT-TTTATATTTGTATTCATATTATTTATATTTATATTTG
* * *
305596 TTTA-TTTTGT-TTTGTATTCATATTTGTTTATATTT-T-TTT-
1 TATATTTTTATATTTGTATTCATA-TTATTTATATTTATATTTG
305635 TATATTTTTATATTTGTAT
1 TATATTTTTATATTTGTAT
305654 ATTTTTATAT
Statistics
Matches: 90, Mismatches: 9, Indels: 15
0.79 0.08 0.13
Matches are distributed among these distances:
39 3 0.03
40 8 0.09
41 19 0.21
42 14 0.16
43 1 0.01
44 4 0.04
46 5 0.06
48 2 0.02
49 4 0.04
50 30 0.33
ACGTcount: A:0.27, C:0.01, G:0.07, T:0.66
Consensus pattern (43 bp):
TATATTTTTATATTTGTATTCATATTATTTATATTTATATTTG
Left flanking sequence: Indices 305002 -- 305501
AAGATCAGTCGTGGTCTTACAAACTATACCGATGGTATGGACGAATCTCTTTATTCATACAAATG
CGTAAAAGATGTTAGTCGCACTTAAAAGCCGAGTACTCTACCATTGAGTTAGCAACCCAAAAAAG
GACTAAAAAAATTAGGTTATATAGATACAATCAGAATCAAAATAAATAAAGAGATTGAATCGTAT
GACACAATCAAAACATTAAATTAGAAAGAAAGAACCAAGAAATGAAATAATTTATAATGGATTCT
GAACATAAAAAAAAGATCAGCTAAAAATAAAAATAAAAGAAATTCTCAAAAAAATCTCAATTCAA
ATAGAAAAAAAAAAAATAAGAATAAAGTAAGTAAAATAAGCAAATGCAAAGTATATAAAAGTGTA
AATAAAAATAAAATAAAAATAAATAAAATAAAAGTATAAATCAAAATAAAAGTATAAATCAAAAT
ATAAAATATATAGATATTTATATATATATATATTAGATATTAGTA
Right flanking sequence: Indices 305654 -- 306153
ATTTTTATATTTGAATTTGAATTGAGTTTCGGTTTGAATTTATCGATTTTATTTATTTTATTTAA
AATTAGAATTTATCAATTTCTATTTCTATCAATTTATATTTGTATTTTATCAGTTTATATTATAT
ATTAAAATTATATATTAAATTTATATTCTATATTTATATATTATTTATATATTAATATATTATAT
ATTTATATATTATATATTATAATATTATAAAATATATTTATATATTATTTATTATTTATATTATT
TATATAAAATATATTTATATATTATTTATTATTTATATTATTTATATTTATATTATTTATGATTT
TTTAGATAAAATATATTTATATATTATTTATTATTTATATTATATTATTTATTATTTATATTATT
TATTTATATTATTTATGATTTTTTAGAAATTATTTTTTATAATTTTTATAATTATTATTATAATT
ATTATATAGATAGATAATTACTATATATACTATCTATATAGTATA
Found at i:305656 original size:16 final size:16
Alignment explanation
Indices: 305615--305666 Score: 65
Period size: 16 Copynumber: 3.4 Consensus size: 16
305605 TTTTGTATTC
* *
305615 ATATTTGTTTATATTT
1 ATATTTGTATATTTTT
305631 -T-TTT-TATATTTTT
1 ATATTTGTATATTTTT
305644 ATATTTGTATATTTTT
1 ATATTTGTATATTTTT
305660 ATATTTG
1 ATATTTG
305667 AATTTGAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 7 0.23
14 4 0.13
15 4 0.13
16 16 0.52
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.71
Consensus pattern (16 bp):
ATATTTGTATATTTTT
Left flanking sequence: Indices 305115 -- 305614
TTAGCAACCCAAAAAAGGACTAAAAAAATTAGGTTATATAGATACAATCAGAATCAAAATAAATA
AAGAGATTGAATCGTATGACACAATCAAAACATTAAATTAGAAAGAAAGAACCAAGAAATGAAAT
AATTTATAATGGATTCTGAACATAAAAAAAAGATCAGCTAAAAATAAAAATAAAAGAAATTCTCA
AAAAAATCTCAATTCAAATAGAAAAAAAAAAAATAAGAATAAAGTAAGTAAAATAAGCAAATGCA
AAGTATATAAAAGTGTAAATAAAAATAAAATAAAAATAAATAAAATAAAAGTATAAATCAAAATA
AAAGTATAAATCAAAATATAAAATATATAGATATTTATATATATATATATTAGATATTAGTATAT
ATTATTTATATTTGTATTTATATTATTATATATATTAGATATTAGTATATATTATTTATATTTGT
ATTTATATTATTTGTATTTATATTTGTTTATTTTGTTTTGTATTC
Right flanking sequence: Indices 305667 -- 306166
AATTTGAATTGAGTTTCGGTTTGAATTTATCGATTTTATTTATTTTATTTAAAATTAGAATTTAT
CAATTTCTATTTCTATCAATTTATATTTGTATTTTATCAGTTTATATTATATATTAAAATTATAT
ATTAAATTTATATTCTATATTTATATATTATTTATATATTAATATATTATATATTTATATATTAT
ATATTATAATATTATAAAATATATTTATATATTATTTATTATTTATATTATTTATATAAAATATA
TTTATATATTATTTATTATTTATATTATTTATATTTATATTATTTATGATTTTTTAGATAAAATA
TATTTATATATTATTTATTATTTATATTATATTATTTATTATTTATATTATTTATTTATATTATT
TATGATTTTTTAGAAATTATTTTTTATAATTTTTATAATTATTATTATAATTATTATATAGATAG
ATAATTACTATATATACTATCTATATAGTATATAGATTAGTATAT
Found at i:305659 original size:26 final size:27
Alignment explanation
Indices: 305506--305659 Score: 90
Period size: 26 Copynumber: 5.8 Consensus size: 27
305496 TTAGTATATA
* *
305506 TTATTTATATTTG--TATTTATAT-TA
1 TTATTTATATTTGTATATTTTTTTATA
* * ** *
305530 TTATATATATTAG-ATATTAGTATATA
1 TTATTTATATTTGTATATTTTTTTATA
* * *
305556 TTATTTATATTTGTAT-TTATATTATT
1 TTATTTATATTTGTATATTTTTTTATA
*
305582 TGTATTTATATTTGTTTATTTTGTTT-T-
1 T-TATTTATATTTGTATATTTT-TTTATA
* *
305609 GTATTCATATTTGTTTATATTTTTTTTATA
1 TTATTTATATTTG--TATA-TTTTTTTATA
305639 TT-TTTATATTTGTATATTTTT
1 TTATTTATATTTGTATATTTTT
305660 ATATTTGAAT
Statistics
Matches: 101, Mismatches: 18, Indels: 20
0.73 0.13 0.14
Matches are distributed among these distances:
24 11 0.11
25 7 0.07
26 36 0.36
27 20 0.20
28 10 0.10
29 16 0.16
30 1 0.01
ACGTcount: A:0.26, C:0.01, G:0.06, T:0.67
Consensus pattern (27 bp):
TTATTTATATTTGTATATTTTTTTATA
Left flanking sequence: Indices 305006 -- 305505
TCAGTCGTGGTCTTACAAACTATACCGATGGTATGGACGAATCTCTTTATTCATACAAATGCGTA
AAAGATGTTAGTCGCACTTAAAAGCCGAGTACTCTACCATTGAGTTAGCAACCCAAAAAAGGACT
AAAAAAATTAGGTTATATAGATACAATCAGAATCAAAATAAATAAAGAGATTGAATCGTATGACA
CAATCAAAACATTAAATTAGAAAGAAAGAACCAAGAAATGAAATAATTTATAATGGATTCTGAAC
ATAAAAAAAAGATCAGCTAAAAATAAAAATAAAAGAAATTCTCAAAAAAATCTCAATTCAAATAG
AAAAAAAAAAAATAAGAATAAAGTAAGTAAAATAAGCAAATGCAAAGTATATAAAAGTGTAAATA
AAAATAAAATAAAAATAAATAAAATAAAAGTATAAATCAAAATAAAAGTATAAATCAAAATATAA
AATATATAGATATTTATATATATATATATTAGATATTAGTATATA
Right flanking sequence: Indices 305660 -- 306159
ATATTTGAATTTGAATTGAGTTTCGGTTTGAATTTATCGATTTTATTTATTTTATTTAAAATTAG
AATTTATCAATTTCTATTTCTATCAATTTATATTTGTATTTTATCAGTTTATATTATATATTAAA
ATTATATATTAAATTTATATTCTATATTTATATATTATTTATATATTAATATATTATATATTTAT
ATATTATATATTATAATATTATAAAATATATTTATATATTATTTATTATTTATATTATTTATATA
AAATATATTTATATATTATTTATTATTTATATTATTTATATTTATATTATTTATGATTTTTTAGA
TAAAATATATTTATATATTATTTATTATTTATATTATATTATTTATTATTTATATTATTTATTTA
TATTATTTATGATTTTTTAGAAATTATTTTTTATAATTTTTATAATTATTATTATAATTATTATA
TAGATAGATAATTACTATATATACTATCTATATAGTATATAGATT
Found at i:305750 original size:16 final size:16
Alignment explanation
Indices: 305729--305759 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
305719 AATTAGAATT
*
305729 TATCAATTTCTATTTC
1 TATCAATTTATATTTC
305745 TATCAATTTATATTT
1 TATCAATTTATATTT
305760 GTATTTTATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.13, G:0.00, T:0.58
Consensus pattern (16 bp):
TATCAATTTATATTTC
Left flanking sequence: Indices 305229 -- 305728
AACCAAGAAATGAAATAATTTATAATGGATTCTGAACATAAAAAAAAGATCAGCTAAAAATAAAA
ATAAAAGAAATTCTCAAAAAAATCTCAATTCAAATAGAAAAAAAAAAAATAAGAATAAAGTAAGT
AAAATAAGCAAATGCAAAGTATATAAAAGTGTAAATAAAAATAAAATAAAAATAAATAAAATAAA
AGTATAAATCAAAATAAAAGTATAAATCAAAATATAAAATATATAGATATTTATATATATATATA
TTAGATATTAGTATATATTATTTATATTTGTATTTATATTATTATATATATTAGATATTAGTATA
TATTATTTATATTTGTATTTATATTATTTGTATTTATATTTGTTTATTTTGTTTTGTATTCATAT
TTGTTTATATTTTTTTTATATTTTTATATTTGTATATTTTTATATTTGAATTTGAATTGAGTTTC
GGTTTGAATTTATCGATTTTATTTATTTTATTTAAAATTAGAATT
Right flanking sequence: Indices 305760 -- 306259
GTATTTTATCAGTTTATATTATATATTAAAATTATATATTAAATTTATATTCTATATTTATATAT
TATTTATATATTAATATATTATATATTTATATATTATATATTATAATATTATAAAATATATTTAT
ATATTATTTATTATTTATATTATTTATATAAAATATATTTATATATTATTTATTATTTATATTAT
TTATATTTATATTATTTATGATTTTTTAGATAAAATATATTTATATATTATTTATTATTTATATT
ATATTATTTATTATTTATATTATTTATTTATATTATTTATGATTTTTTAGAAATTATTTTTTATA
ATTTTTATAATTATTATTATAATTATTATATAGATAGATAATTACTATATATACTATCTATATAG
TATATAGATTAGTATATAGAGATTAGTATATAGATAGATTATTTAGTAGATAAATATTATATTAT
ATATTAAATATATATTAAATATTATATATAAATATTATATATTAA
Found at i:305775 original size:21 final size:22
Alignment explanation
Indices: 305725--305779 Score: 67
Period size: 21 Copynumber: 2.5 Consensus size: 22
305715 TTAAAATTAG
305725 AATTTATCAATTTCTATTTCTATC
1 AATTTAT--ATTTCTATTTCTATC
*
305749 AATTTATATTTGTATTT-TATC
1 AATTTATATTTCTATTTCTATC
*
305770 AGTTTATATT
1 AATTTATATT
305780 ATATATTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 13 0.45
22 9 0.31
24 7 0.24
ACGTcount: A:0.29, C:0.09, G:0.04, T:0.58
Consensus pattern (22 bp):
AATTTATATTTCTATTTCTATC
Left flanking sequence: Indices 305225 -- 305724
AAAGAACCAAGAAATGAAATAATTTATAATGGATTCTGAACATAAAAAAAAGATCAGCTAAAAAT
AAAAATAAAAGAAATTCTCAAAAAAATCTCAATTCAAATAGAAAAAAAAAAAATAAGAATAAAGT
AAGTAAAATAAGCAAATGCAAAGTATATAAAAGTGTAAATAAAAATAAAATAAAAATAAATAAAA
TAAAAGTATAAATCAAAATAAAAGTATAAATCAAAATATAAAATATATAGATATTTATATATATA
TATATTAGATATTAGTATATATTATTTATATTTGTATTTATATTATTATATATATTAGATATTAG
TATATATTATTTATATTTGTATTTATATTATTTGTATTTATATTTGTTTATTTTGTTTTGTATTC
ATATTTGTTTATATTTTTTTTATATTTTTATATTTGTATATTTTTATATTTGAATTTGAATTGAG
TTTCGGTTTGAATTTATCGATTTTATTTATTTTATTTAAAATTAG
Right flanking sequence: Indices 305780 -- 306279
ATATATTAAAATTATATATTAAATTTATATTCTATATTTATATATTATTTATATATTAATATATT
ATATATTTATATATTATATATTATAATATTATAAAATATATTTATATATTATTTATTATTTATAT
TATTTATATAAAATATATTTATATATTATTTATTATTTATATTATTTATATTTATATTATTTATG
ATTTTTTAGATAAAATATATTTATATATTATTTATTATTTATATTATATTATTTATTATTTATAT
TATTTATTTATATTATTTATGATTTTTTAGAAATTATTTTTTATAATTTTTATAATTATTATTAT
AATTATTATATAGATAGATAATTACTATATATACTATCTATATAGTATATAGATTAGTATATAGA
GATTAGTATATAGATAGATTATTTAGTAGATAAATATTATATTATATATTAAATATATATTAAAT
ATTATATATAAATATTATATATTAAACAGATATATTTATTAATAT
Found at i:305786 original size:7 final size:7
Alignment explanation
Indices: 305774--306258 Score: 183
Period size: 7 Copynumber: 69.0 Consensus size: 7
305764 TTTATCAGTT
305774 TATATTA
1 TATATTA
305781 TATATTA
1 TATATTA
*
305788 -AAATTA
1 TATATTA
305794 TATATTA
1 TATATTA
305801 -A-ATT-
1 TATATTA
*
305805 TATATTC
1 TATATTA
305812 TATATT-
1 TATATTA
305818 TATA-TA
1 TATATTA
305824 T-TATTTA
1 TATA-TTA
305831 TATATTAA
1 TATATT-A
305839 TATATTA
1 TATATTA
305846 TATATTTA
1 TATA-TTA
305854 TATATTA
1 TATATTA
305861 TATATTA
1 TATATTA
305868 TAATATTA
1 T-ATATTA
* *
305876 TAAAATA
1 TATATTA
305883 TAT-TTA
1 TATATTA
305889 TATATTA
1 TATATTA
*
305896 TTTATTA
1 TATATTA
*
305903 TTTA-TA
1 TATATTA
305909 T-TATTTA
1 TATA-TTA
**
305916 TATAAAA
1 TATATTA
305923 TATATTTA
1 TATA-TTA
305931 TATATTA
1 TATATTA
*
305938 TTTATTA
1 TATATTA
*
305945 TTTA-TA
1 TATATTA
305951 T-TATT-
1 TATATTA
305956 TATATT-
1 TATATTA
305962 TATATTA
1 TATATTA
* *
305969 TTTATGA
1 TATATTA
* *
305976 TTTTTTA
1 TATATTA
* **
305983 GATAAAA
1 TATATTA
305990 TATATTTA
1 TATA-TTA
305998 TATATTA
1 TATATTA
*
306005 TTTATTA
1 TATATTA
306012 TTTATATTA
1 --TATATTA
306021 TATTATT-
1 TA-TATTA
306028 TATTATT-
1 TA-TATTA
306035 TATATTA
1 TATATTA
*
306042 TTTATT-
1 TATATTA
306048 TATATTA
1 TATATTA
* *
306055 TTTATGA
1 TATATTA
* *
306062 TTTTTTA
1 TATATTA
* *
306069 GAAATTA
1 TATATTA
* *
306076 TTTTTTA
1 TATATTA
*
306083 TA-ATTTT
1 TATA-TTA
306090 TATAATTA
1 TAT-ATTA
306098 T-TATTA
1 TATATTA
306104 TAATTATTA
1 T-A-TATTA
*
306113 TATAGATA
1 TATA-TTA
*
306121 GATAATTA
1 TAT-ATTA
306129 CTATA-TA
1 -TATATTA
306136 TACTATCTA
1 TA-TAT-TA
306145 TATAGTATA
1 TATA-T-TA
*
306154 TAGATTA
1 TATATTA
306161 GTATA-TA
1 -TATATTA
* *
306168 GAGATTA
1 TATATTA
*
306175 GTATATAGA
1 -TATAT-TA
*
306184 TAGATTA
1 TATATTA
* *
306191 TTTAGTA
1 TATATTA
* *
306198 GATAAATA
1 TAT-ATTA
306206 TTATATTA
1 -TATATTA
306214 TATATTA
1 TATATTA
306221 -A-A-TA
1 TATATTA
306225 TATATTA
1 TATATTA
*
306232 AATATTA
1 TATATTA
306239 TATA-TA
1 TATATTA
*
306245 AATATTA
1 TATATTA
306252 TATATTA
1 TATATTA
306259 AACAGATATA
Statistics
Matches: 360, Mismatches: 70, Indels: 96
0.68 0.13 0.18
Matches are distributed among these distances:
4 2 0.01
5 14 0.04
6 61 0.17
7 185 0.51
8 69 0.19
9 29 0.08
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (7 bp):
TATATTA
Left flanking sequence: Indices 305274 -- 305773
AAGATCAGCTAAAAATAAAAATAAAAGAAATTCTCAAAAAAATCTCAATTCAAATAGAAAAAAAA
AAAATAAGAATAAAGTAAGTAAAATAAGCAAATGCAAAGTATATAAAAGTGTAAATAAAAATAAA
ATAAAAATAAATAAAATAAAAGTATAAATCAAAATAAAAGTATAAATCAAAATATAAAATATATA
GATATTTATATATATATATATTAGATATTAGTATATATTATTTATATTTGTATTTATATTATTAT
ATATATTAGATATTAGTATATATTATTTATATTTGTATTTATATTATTTGTATTTATATTTGTTT
ATTTTGTTTTGTATTCATATTTGTTTATATTTTTTTTATATTTTTATATTTGTATATTTTTATAT
TTGAATTTGAATTGAGTTTCGGTTTGAATTTATCGATTTTATTTATTTTATTTAAAATTAGAATT
TATCAATTTCTATTTCTATCAATTTATATTTGTATTTTATCAGTT
Right flanking sequence: Indices 306259 -- 306758
AACAGATATATTTATTAATATATTTATTATAAATATCTTTATAAAATAAAATAAAGGTCTTTATA
AATTCTTTATAAATATAAATATAAATAAATTCTTTATACTTTATAAATATAAATATAAATTCTTT
ATAAATATTTTTAAATATTTATAAATATTTTTATTTACCTATTTATATTTTTATGTACATATCTA
ATTTTTATTTACATATTTATATTACATATTTAATATATTTTATTAAATATATTAAATTAAATATA
TTTTAGTTTACATAACTTATATTATAATTCTATAATTTATATTATATTATAATTTATATAACAAT
TATATATAATATAACAATTATATATAATTATAACAATTAGAACAATACTTTTTTATAATTTATAA
CATTATTTTATAAATATAATATTTTATAAATTATAAATTTTAAATATAATAAATTTTAAATATAA
ATTTTTTCTTTTTTTTAATCAAAAAAAATATTTTTGTATCACAGC
Found at i:305786 original size:22 final size:22
Alignment explanation
Indices: 305725--305786 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 22
305715 TTAAAATTAG
*
305725 AATTTATCAATTTCTATTTCTATC
1 AATTTAT--ATTTATATTTCTATC
*
305749 AATTTATATTTGTATTT-TATC
1 AATTTATATTTATATTTCTATC
*
305770 AGTTTATATTATATATT
1 AATTTATATT-TATATT
305787 AAAATTATAT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
21 13 0.38
22 14 0.41
24 7 0.21
ACGTcount: A:0.31, C:0.08, G:0.03, T:0.58
Consensus pattern (22 bp):
AATTTATATTTATATTTCTATC
Left flanking sequence: Indices 305225 -- 305724
AAAGAACCAAGAAATGAAATAATTTATAATGGATTCTGAACATAAAAAAAAGATCAGCTAAAAAT
AAAAATAAAAGAAATTCTCAAAAAAATCTCAATTCAAATAGAAAAAAAAAAAATAAGAATAAAGT
AAGTAAAATAAGCAAATGCAAAGTATATAAAAGTGTAAATAAAAATAAAATAAAAATAAATAAAA
TAAAAGTATAAATCAAAATAAAAGTATAAATCAAAATATAAAATATATAGATATTTATATATATA
TATATTAGATATTAGTATATATTATTTATATTTGTATTTATATTATTATATATATTAGATATTAG
TATATATTATTTATATTTGTATTTATATTATTTGTATTTATATTTGTTTATTTTGTTTTGTATTC
ATATTTGTTTATATTTTTTTTATATTTTTATATTTGTATATTTTTATATTTGAATTTGAATTGAG
TTTCGGTTTGAATTTATCGATTTTATTTATTTTATTTAAAATTAG
Right flanking sequence: Indices 305787 -- 306286
AAAATTATATATTAAATTTATATTCTATATTTATATATTATTTATATATTAATATATTATATATT
TATATATTATATATTATAATATTATAAAATATATTTATATATTATTTATTATTTATATTATTTAT
ATAAAATATATTTATATATTATTTATTATTTATATTATTTATATTTATATTATTTATGATTTTTT
AGATAAAATATATTTATATATTATTTATTATTTATATTATATTATTTATTATTTATATTATTTAT
TTATATTATTTATGATTTTTTAGAAATTATTTTTTATAATTTTTATAATTATTATTATAATTATT
ATATAGATAGATAATTACTATATATACTATCTATATAGTATATAGATTAGTATATAGAGATTAGT
ATATAGATAGATTATTTAGTAGATAAATATTATATTATATATTAAATATATATTAAATATTATAT
ATAAATATTATATATTAAACAGATATATTTATTAATATATTTATT
Found at i:305797 original size:15 final size:16
Alignment explanation
Indices: 305779--305954 Score: 71
Period size: 15 Copynumber: 11.6 Consensus size: 16
305769 CAGTTTATAT
305779 TATATATTA-AAA-T-
1 TATATATTATAAATTA
305792 TATATA-T-TAAATT-
1 TATATATTATAAATTA
*
305805 TATAT-TCTAT-ATTTA
1 TATATAT-TATAAATTA
*
305820 TATATTATTTATATATTA
1 TATA-TA-TTATAAATTA
*
305838 -ATATATTATATATT-
1 TATATATTATAAATTA
*
305852 TATATATTATATATTA
1 TATATATTATAAATTA
305868 TA-ATATTATAAA--A
1 TATATATTATAAATTA
*
305881 TATAT-TTATATATTA
1 TATATATTATAAATTA
* *
305896 TTTATTATT-TATATTA
1 TATA-TATTATAAATTA
*
305912 TTTATA-TA-AAATATA
1 TATATATTATAAAT-TA
**
305927 TTTATATATTATTTATTA
1 --TATATATTATAAATTA
*
305945 TTTATATTAT
1 TATATATTAT
305955 TTATATTTAT
Statistics
Matches: 129, Mismatches: 11, Indels: 43
0.70 0.06 0.23
Matches are distributed among these distances:
12 4 0.03
13 21 0.16
14 10 0.08
15 45 0.35
16 26 0.20
17 13 0.10
18 8 0.06
19 2 0.02
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.57
Consensus pattern (16 bp):
TATATATTATAAATTA
Left flanking sequence: Indices 305279 -- 305778
CAGCTAAAAATAAAAATAAAAGAAATTCTCAAAAAAATCTCAATTCAAATAGAAAAAAAAAAAAT
AAGAATAAAGTAAGTAAAATAAGCAAATGCAAAGTATATAAAAGTGTAAATAAAAATAAAATAAA
AATAAATAAAATAAAAGTATAAATCAAAATAAAAGTATAAATCAAAATATAAAATATATAGATAT
TTATATATATATATATTAGATATTAGTATATATTATTTATATTTGTATTTATATTATTATATATA
TTAGATATTAGTATATATTATTTATATTTGTATTTATATTATTTGTATTTATATTTGTTTATTTT
GTTTTGTATTCATATTTGTTTATATTTTTTTTATATTTTTATATTTGTATATTTTTATATTTGAA
TTTGAATTGAGTTTCGGTTTGAATTTATCGATTTTATTTATTTTATTTAAAATTAGAATTTATCA
ATTTCTATTTCTATCAATTTATATTTGTATTTTATCAGTTTATAT
Right flanking sequence: Indices 305955 -- 306454
TTATATTTATATTATTTATGATTTTTTAGATAAAATATATTTATATATTATTTATTATTTATATT
ATATTATTTATTATTTATATTATTTATTTATATTATTTATGATTTTTTAGAAATTATTTTTTATA
ATTTTTATAATTATTATTATAATTATTATATAGATAGATAATTACTATATATACTATCTATATAG
TATATAGATTAGTATATAGAGATTAGTATATAGATAGATTATTTAGTAGATAAATATTATATTAT
ATATTAAATATATATTAAATATTATATATAAATATTATATATTAAACAGATATATTTATTAATAT
ATTTATTATAAATATCTTTATAAAATAAAATAAAGGTCTTTATAAATTCTTTATAAATATAAATA
TAAATAAATTCTTTATACTTTATAAATATAAATATAAATTCTTTATAAATATTTTTAAATATTTA
TAAATATTTTTATTTACCTATTTATATTTTTATGTACATATCTAA
Found at i:305805 original size:52 final size:52
Alignment explanation
Indices: 305773--306047 Score: 155
Period size: 50 Copynumber: 5.5 Consensus size: 52
305763 TTTTATCAGT
305773 TTATATTATATATTAA-A-ATTATATATTAAATTTATATTCTATATTTATATA
1 TTAT-TTATATATTAATATATTATATATTAAATTTATATTCTATATTTATATA
* *
305824 TTATTTATATATTAATATATTATATATT---TATATATTATATA-TTATAATA
1 TTATTTATATATTAATATATTATATATTAAATTTATATTCTATATTTAT-ATA
** * * * * * *
305873 TTATAAAATATATTTATATATTATTTATT--ATTTATATTATTTATATA-AAA
1 TTAT-TTATATATTAATATATTATATATTAAATTTATATTCTATATTTATATA
* *
305923 TATATTTATATATT-ATTTATTATTTATATT--ATTTATATT-TATATTATTTATGA
1 T-TATTTATATATTAATATATTA--TATATTAAATTTATATTCTATATT-TATAT-A
* * *
305976 TTTTTTAGATA-AAATATATTTATATATT--ATTTATTATT-TATA--T-TATA
1 TTATTTATATATTAATATA-TTATATATTAAATTTA-TATTCTATATTTATATA
*
306023 TTATTTAT-TATT--TATATTATTTATT
1 TTATTTATATATTAATATATTATATATT
306048 TATATTATTT
Statistics
Matches: 182, Mismatches: 26, Indels: 39
0.74 0.11 0.16
Matches are distributed among these distances:
44 8 0.04
45 4 0.02
46 2 0.01
47 7 0.04
48 7 0.04
49 26 0.14
50 45 0.25
51 45 0.25
52 33 0.18
53 5 0.03
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.60
Consensus pattern (52 bp):
TTATTTATATATTAATATATTATATATTAAATTTATATTCTATATTTATATA
Left flanking sequence: Indices 305273 -- 305772
AAAGATCAGCTAAAAATAAAAATAAAAGAAATTCTCAAAAAAATCTCAATTCAAATAGAAAAAAA
AAAAATAAGAATAAAGTAAGTAAAATAAGCAAATGCAAAGTATATAAAAGTGTAAATAAAAATAA
AATAAAAATAAATAAAATAAAAGTATAAATCAAAATAAAAGTATAAATCAAAATATAAAATATAT
AGATATTTATATATATATATATTAGATATTAGTATATATTATTTATATTTGTATTTATATTATTA
TATATATTAGATATTAGTATATATTATTTATATTTGTATTTATATTATTTGTATTTATATTTGTT
TATTTTGTTTTGTATTCATATTTGTTTATATTTTTTTTATATTTTTATATTTGTATATTTTTATA
TTTGAATTTGAATTGAGTTTCGGTTTGAATTTATCGATTTTATTTATTTTATTTAAAATTAGAAT
TTATCAATTTCTATTTCTATCAATTTATATTTGTATTTTATCAGT
Right flanking sequence: Indices 306048 -- 306547
TATATTATTTATGATTTTTTAGAAATTATTTTTTATAATTTTTATAATTATTATTATAATTATTA
TATAGATAGATAATTACTATATATACTATCTATATAGTATATAGATTAGTATATAGAGATTAGTA
TATAGATAGATTATTTAGTAGATAAATATTATATTATATATTAAATATATATTAAATATTATATA
TAAATATTATATATTAAACAGATATATTTATTAATATATTTATTATAAATATCTTTATAAAATAA
AATAAAGGTCTTTATAAATTCTTTATAAATATAAATATAAATAAATTCTTTATACTTTATAAATA
TAAATATAAATTCTTTATAAATATTTTTAAATATTTATAAATATTTTTATTTACCTATTTATATT
TTTATGTACATATCTAATTTTTATTTACATATTTATATTACATATTTAATATATTTTATTAAATA
TATTAAATTAAATATATTTTAGTTTACATAACTTATATTATAATT
Found at i:305808 original size:11 final size:13
Alignment explanation
Indices: 305777--305877 Score: 73
Period size: 13 Copynumber: 7.5 Consensus size: 13
305767 ATCAGTTTAT
305777 ATTATATATTAAA
1 ATTATATATTAAA
305790 ATTATATATTAAA
1 ATTATATATTAAA
* *
305803 TTTATAT-TCTATA
1 ATTATATAT-TAAA
*
305816 TTTATATATT--A
1 ATTATATATTAAA
*
305827 TTTATATATTAATA
1 ATTATATATTAA-A
*
305841 TATTATATATTTATAT
1 -ATTATATA-TTA-AA
305857 ATTATATATTATAA
1 ATTATATATTA-AA
305871 TATTATA
1 -ATTATA
305878 AAATATATTT
Statistics
Matches: 74, Mismatches: 5, Indels: 16
0.78 0.05 0.17
Matches are distributed among these distances:
11 11 0.15
12 1 0.01
13 30 0.41
14 7 0.09
15 21 0.28
16 3 0.04
17 1 0.01
ACGTcount: A:0.44, C:0.01, G:0.00, T:0.55
Consensus pattern (13 bp):
ATTATATATTAAA
Left flanking sequence: Indices 305277 -- 305776
ATCAGCTAAAAATAAAAATAAAAGAAATTCTCAAAAAAATCTCAATTCAAATAGAAAAAAAAAAA
ATAAGAATAAAGTAAGTAAAATAAGCAAATGCAAAGTATATAAAAGTGTAAATAAAAATAAAATA
AAAATAAATAAAATAAAAGTATAAATCAAAATAAAAGTATAAATCAAAATATAAAATATATAGAT
ATTTATATATATATATATTAGATATTAGTATATATTATTTATATTTGTATTTATATTATTATATA
TATTAGATATTAGTATATATTATTTATATTTGTATTTATATTATTTGTATTTATATTTGTTTATT
TTGTTTTGTATTCATATTTGTTTATATTTTTTTTATATTTTTATATTTGTATATTTTTATATTTG
AATTTGAATTGAGTTTCGGTTTGAATTTATCGATTTTATTTATTTTATTTAAAATTAGAATTTAT
CAATTTCTATTTCTATCAATTTATATTTGTATTTTATCAGTTTAT
Right flanking sequence: Indices 305878 -- 306377
AAATATATTTATATATTATTTATTATTTATATTATTTATATAAAATATATTTATATATTATTTAT
TATTTATATTATTTATATTTATATTATTTATGATTTTTTAGATAAAATATATTTATATATTATTT
ATTATTTATATTATATTATTTATTATTTATATTATTTATTTATATTATTTATGATTTTTTAGAAA
TTATTTTTTATAATTTTTATAATTATTATTATAATTATTATATAGATAGATAATTACTATATATA
CTATCTATATAGTATATAGATTAGTATATAGAGATTAGTATATAGATAGATTATTTAGTAGATAA
ATATTATATTATATATTAAATATATATTAAATATTATATATAAATATTATATATTAAACAGATAT
ATTTATTAATATATTTATTATAAATATCTTTATAAAATAAAATAAAGGTCTTTATAAATTCTTTA
TAAATATAAATATAAATAAATTCTTTATACTTTATAAATATAAAT
Found at i:305891 original size:67 final size:64
Alignment explanation
Indices: 305820--306052 Score: 235
Period size: 67 Copynumber: 3.6 Consensus size: 64
305810 TCTATATTTA
** **
305820 TATATTATTTATATATTAATATATTATATATTTATATATTATATA-TTATAATATTATAAAATAT
1 TATATTATTTATATATT-ATATATTATATATTTATATAAAATATATTTAT-ATATTAT-TTAT-T
305884 ATT
62 ATT
* *
305887 TATA-TA-TTATTTATTATTTA-TAT-TATTTATATAAAATATATTTATATATTATTTATTATT
1 TATATTATTTATATATTATATATTATATATTTATATAAAATATATTTATATATTATTTATTATT
* *
305947 TATATTATTTATAT-TTATATTATTTATGATTTTTTAGATAAAATATATTTATATATTATTTATT
1 TATATTATTTATATATTATA-TA-TTAT-A-TATTTATATAAAATATATTTATATATTATTTATT
306011 ATT
62 ATT
* *
306014 TATATTATATTATTTATTATTTATATTATTTATTTATAT
1 TATATTAT-TTATATATTA--TATATTATATATTTATAT
306053 TATTTATGAT
Statistics
Matches: 139, Mismatches: 14, Indels: 26
0.78 0.08 0.15
Matches are distributed among these distances:
60 8 0.06
61 8 0.06
62 29 0.21
63 7 0.05
64 7 0.05
65 8 0.06
66 2 0.01
67 54 0.39
68 5 0.04
69 7 0.05
70 2 0.01
71 2 0.01
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.61
Consensus pattern (64 bp):
TATATTATTTATATATTATATATTATATATTTATATAAAATATATTTATATATTATTTATTATT
Left flanking sequence: Indices 305320 -- 305819
AATTCAAATAGAAAAAAAAAAAATAAGAATAAAGTAAGTAAAATAAGCAAATGCAAAGTATATAA
AAGTGTAAATAAAAATAAAATAAAAATAAATAAAATAAAAGTATAAATCAAAATAAAAGTATAAA
TCAAAATATAAAATATATAGATATTTATATATATATATATTAGATATTAGTATATATTATTTATA
TTTGTATTTATATTATTATATATATTAGATATTAGTATATATTATTTATATTTGTATTTATATTA
TTTGTATTTATATTTGTTTATTTTGTTTTGTATTCATATTTGTTTATATTTTTTTTATATTTTTA
TATTTGTATATTTTTATATTTGAATTTGAATTGAGTTTCGGTTTGAATTTATCGATTTTATTTAT
TTTATTTAAAATTAGAATTTATCAATTTCTATTTCTATCAATTTATATTTGTATTTTATCAGTTT
ATATTATATATTAAAATTATATATTAAATTTATATTCTATATTTA
Right flanking sequence: Indices 306053 -- 306552
TATTTATGATTTTTTAGAAATTATTTTTTATAATTTTTATAATTATTATTATAATTATTATATAG
ATAGATAATTACTATATATACTATCTATATAGTATATAGATTAGTATATAGAGATTAGTATATAG
ATAGATTATTTAGTAGATAAATATTATATTATATATTAAATATATATTAAATATTATATATAAAT
ATTATATATTAAACAGATATATTTATTAATATATTTATTATAAATATCTTTATAAAATAAAATAA
AGGTCTTTATAAATTCTTTATAAATATAAATATAAATAAATTCTTTATACTTTATAAATATAAAT
ATAAATTCTTTATAAATATTTTTAAATATTTATAAATATTTTTATTTACCTATTTATATTTTTAT
GTACATATCTAATTTTTATTTACATATTTATATTACATATTTAATATATTTTATTAAATATATTA
AATTAAATATATTTTAGTTTACATAACTTATATTATAATTCTATA
Found at i:306106 original size:12 final size:12
Alignment explanation
Indices: 306089--306113 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
306079 TTTATAATTT
306089 TTATAATTATTA
1 TTATAATTATTA
306101 TTATAATTATTA
1 TTATAATTATTA
306113 T
1 T
306114 ATAGATAGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TTATAATTATTA
Left flanking sequence: Indices 305589 -- 306088
ATATTTGTTTATTTTGTTTTGTATTCATATTTGTTTATATTTTTTTTATATTTTTATATTTGTAT
ATTTTTATATTTGAATTTGAATTGAGTTTCGGTTTGAATTTATCGATTTTATTTATTTTATTTAA
AATTAGAATTTATCAATTTCTATTTCTATCAATTTATATTTGTATTTTATCAGTTTATATTATAT
ATTAAAATTATATATTAAATTTATATTCTATATTTATATATTATTTATATATTAATATATTATAT
ATTTATATATTATATATTATAATATTATAAAATATATTTATATATTATTTATTATTTATATTATT
TATATAAAATATATTTATATATTATTTATTATTTATATTATTTATATTTATATTATTTATGATTT
TTTAGATAAAATATATTTATATATTATTTATTATTTATATTATATTATTTATTATTTATATTATT
TATTTATATTATTTATGATTTTTTAGAAATTATTTTTTATAATTT
Right flanking sequence: Indices 306114 -- 306613
ATAGATAGATAATTACTATATATACTATCTATATAGTATATAGATTAGTATATAGAGATTAGTAT
ATAGATAGATTATTTAGTAGATAAATATTATATTATATATTAAATATATATTAAATATTATATAT
AAATATTATATATTAAACAGATATATTTATTAATATATTTATTATAAATATCTTTATAAAATAAA
ATAAAGGTCTTTATAAATTCTTTATAAATATAAATATAAATAAATTCTTTATACTTTATAAATAT
AAATATAAATTCTTTATAAATATTTTTAAATATTTATAAATATTTTTATTTACCTATTTATATTT
TTATGTACATATCTAATTTTTATTTACATATTTATATTACATATTTAATATATTTTATTAAATAT
ATTAAATTAAATATATTTTAGTTTACATAACTTATATTATAATTCTATAATTTATATTATATTAT
AATTTATATAACAATTATATATAATATAACAATTATATATAATTA
Found at i:306164 original size:12 final size:12
Alignment explanation
Indices: 306147--306184 Score: 58
Period size: 12 Copynumber: 3.0 Consensus size: 12
306137 ACTATCTATA
306147 TAGTATATAGAT
1 TAGTATATAGAT
306159 TAGTATATAGAGAT
1 TAGTATAT--AGAT
306173 TAGTATATAGAT
1 TAGTATATAGAT
306185 AGATTATTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 12 0.50
14 12 0.50
ACGTcount: A:0.42, C:0.00, G:0.18, T:0.39
Consensus pattern (12 bp):
TAGTATATAGAT
Left flanking sequence: Indices 305647 -- 306146
TTTGTATATTTTTATATTTGAATTTGAATTGAGTTTCGGTTTGAATTTATCGATTTTATTTATTT
TATTTAAAATTAGAATTTATCAATTTCTATTTCTATCAATTTATATTTGTATTTTATCAGTTTAT
ATTATATATTAAAATTATATATTAAATTTATATTCTATATTTATATATTATTTATATATTAATAT
ATTATATATTTATATATTATATATTATAATATTATAAAATATATTTATATATTATTTATTATTTA
TATTATTTATATAAAATATATTTATATATTATTTATTATTTATATTATTTATATTTATATTATTT
ATGATTTTTTAGATAAAATATATTTATATATTATTTATTATTTATATTATATTATTTATTATTTA
TATTATTTATTTATATTATTTATGATTTTTTAGAAATTATTTTTTATAATTTTTATAATTATTAT
TATAATTATTATATAGATAGATAATTACTATATATACTATCTATA
Right flanking sequence: Indices 306185 -- 306684
AGATTATTTAGTAGATAAATATTATATTATATATTAAATATATATTAAATATTATATATAAATAT
TATATATTAAACAGATATATTTATTAATATATTTATTATAAATATCTTTATAAAATAAAATAAAG
GTCTTTATAAATTCTTTATAAATATAAATATAAATAAATTCTTTATACTTTATAAATATAAATAT
AAATTCTTTATAAATATTTTTAAATATTTATAAATATTTTTATTTACCTATTTATATTTTTATGT
ACATATCTAATTTTTATTTACATATTTATATTACATATTTAATATATTTTATTAAATATATTAAA
TTAAATATATTTTAGTTTACATAACTTATATTATAATTCTATAATTTATATTATATTATAATTTA
TATAACAATTATATATAATATAACAATTATATATAATTATAACAATTAGAACAATACTTTTTTAT
AATTTATAACATTATTTTATAAATATAATATTTTATAAATTATAA
Found at i:306228 original size:11 final size:12
Alignment explanation
Indices: 306214--306254 Score: 66
Period size: 13 Copynumber: 3.4 Consensus size: 12
306204 TATTATATTA
306214 TATATTAAATA-
1 TATATTAAATAT
306225 TATATTAAATAT
1 TATATTAAATAT
306237 TATATATAAATAT
1 TATAT-TAAATAT
306250 TATAT
1 TATAT
306255 ATTAAACAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 11 0.39
12 5 0.18
13 12 0.43
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (12 bp):
TATATTAAATAT
Left flanking sequence: Indices 305714 -- 306213
TTTAAAATTAGAATTTATCAATTTCTATTTCTATCAATTTATATTTGTATTTTATCAGTTTATAT
TATATATTAAAATTATATATTAAATTTATATTCTATATTTATATATTATTTATATATTAATATAT
TATATATTTATATATTATATATTATAATATTATAAAATATATTTATATATTATTTATTATTTATA
TTATTTATATAAAATATATTTATATATTATTTATTATTTATATTATTTATATTTATATTATTTAT
GATTTTTTAGATAAAATATATTTATATATTATTTATTATTTATATTATATTATTTATTATTTATA
TTATTTATTTATATTATTTATGATTTTTTAGAAATTATTTTTTATAATTTTTATAATTATTATTA
TAATTATTATATAGATAGATAATTACTATATATACTATCTATATAGTATATAGATTAGTATATAG
AGATTAGTATATAGATAGATTATTTAGTAGATAAATATTATATTA
Right flanking sequence: Indices 306255 -- 306754
ATTAAACAGATATATTTATTAATATATTTATTATAAATATCTTTATAAAATAAAATAAAGGTCTT
TATAAATTCTTTATAAATATAAATATAAATAAATTCTTTATACTTTATAAATATAAATATAAATT
CTTTATAAATATTTTTAAATATTTATAAATATTTTTATTTACCTATTTATATTTTTATGTACATA
TCTAATTTTTATTTACATATTTATATTACATATTTAATATATTTTATTAAATATATTAAATTAAA
TATATTTTAGTTTACATAACTTATATTATAATTCTATAATTTATATTATATTATAATTTATATAA
CAATTATATATAATATAACAATTATATATAATTATAACAATTAGAACAATACTTTTTTATAATTT
ATAACATTATTTTATAAATATAATATTTTATAAATTATAAATTTTAAATATAATAAATTTTAAAT
ATAAATTTTTTCTTTTTTTTAATCAAAAAAAATATTTTTGTATCA
Found at i:306269 original size:20 final size:19
Alignment explanation
Indices: 306201--306270 Score: 70
Period size: 20 Copynumber: 3.6 Consensus size: 19
306191 TTTAGTAGAT
306201 AAATATTATATTATATATT-
1 AAATA-TATATTATATATTA
*
306220 AAATATATATTAAATATTA
1 AAATATATATTATATATTA
* *
306239 TATATAAATATTATATATTA
1 -AAATATATATTATATATTA
*
306259 AACAGATATATT
1 AA-ATATATATT
306271 TATTAATATA
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
18 12 0.29
19 6 0.15
20 23 0.56
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.46
Consensus pattern (19 bp):
AAATATATATTATATATTA
Left flanking sequence: Indices 305701 -- 306200
TTTATTTATTTTATTTAAAATTAGAATTTATCAATTTCTATTTCTATCAATTTATATTTGTATTT
TATCAGTTTATATTATATATTAAAATTATATATTAAATTTATATTCTATATTTATATATTATTTA
TATATTAATATATTATATATTTATATATTATATATTATAATATTATAAAATATATTTATATATTA
TTTATTATTTATATTATTTATATAAAATATATTTATATATTATTTATTATTTATATTATTTATAT
TTATATTATTTATGATTTTTTAGATAAAATATATTTATATATTATTTATTATTTATATTATATTA
TTTATTATTTATATTATTTATTTATATTATTTATGATTTTTTAGAAATTATTTTTTATAATTTTT
ATAATTATTATTATAATTATTATATAGATAGATAATTACTATATATACTATCTATATAGTATATA
GATTAGTATATAGAGATTAGTATATAGATAGATTATTTAGTAGAT
Right flanking sequence: Indices 306271 -- 306770
TATTAATATATTTATTATAAATATCTTTATAAAATAAAATAAAGGTCTTTATAAATTCTTTATAA
ATATAAATATAAATAAATTCTTTATACTTTATAAATATAAATATAAATTCTTTATAAATATTTTT
AAATATTTATAAATATTTTTATTTACCTATTTATATTTTTATGTACATATCTAATTTTTATTTAC
ATATTTATATTACATATTTAATATATTTTATTAAATATATTAAATTAAATATATTTTAGTTTACA
TAACTTATATTATAATTCTATAATTTATATTATATTATAATTTATATAACAATTATATATAATAT
AACAATTATATATAATTATAACAATTAGAACAATACTTTTTTATAATTTATAACATTATTTTATA
AATATAATATTTTATAAATTATAAATTTTAAATATAATAAATTTTAAATATAAATTTTTTCTTTT
TTTTAATCAAAAAAAATATTTTTGTATCACAGCACATCCAACAAA
Found at i:306358 original size:38 final size:35
Alignment explanation
Indices: 306302--306383 Score: 105
Period size: 34 Copynumber: 2.3 Consensus size: 35
306292 TATCTTTATA
306302 AAATA-AAATAAAGGTCTTTATAAATTCTTTATAAATAT
1 AAATATAAATAAAGGTCTTTAT--A--CTTTATAAATAT
*
306340 AAATATAAATAAA-TTCTTTATACTTTATAAATAT
1 AAATATAAATAAAGGTCTTTATACTTTATAAATAT
306374 AAATATAAAT
1 AAATATAAAT
306384 TCTTTATAAA
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
34 22 0.52
36 1 0.02
38 12 0.29
39 7 0.17
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.40
Consensus pattern (35 bp):
AAATATAAATAAAGGTCTTTATACTTTATAAATAT
Left flanking sequence: Indices 305802 -- 306301
ATTTATATTCTATATTTATATATTATTTATATATTAATATATTATATATTTATATATTATATATT
ATAATATTATAAAATATATTTATATATTATTTATTATTTATATTATTTATATAAAATATATTTAT
ATATTATTTATTATTTATATTATTTATATTTATATTATTTATGATTTTTTAGATAAAATATATTT
ATATATTATTTATTATTTATATTATATTATTTATTATTTATATTATTTATTTATATTATTTATGA
TTTTTTAGAAATTATTTTTTATAATTTTTATAATTATTATTATAATTATTATATAGATAGATAAT
TACTATATATACTATCTATATAGTATATAGATTAGTATATAGAGATTAGTATATAGATAGATTAT
TTAGTAGATAAATATTATATTATATATTAAATATATATTAAATATTATATATAAATATTATATAT
TAAACAGATATATTTATTAATATATTTATTATAAATATCTTTATA
Right flanking sequence: Indices 306384 -- 306883
TCTTTATAAATATTTTTAAATATTTATAAATATTTTTATTTACCTATTTATATTTTTATGTACAT
ATCTAATTTTTATTTACATATTTATATTACATATTTAATATATTTTATTAAATATATTAAATTAA
ATATATTTTAGTTTACATAACTTATATTATAATTCTATAATTTATATTATATTATAATTTATATA
ACAATTATATATAATATAACAATTATATATAATTATAACAATTAGAACAATACTTTTTTATAATT
TATAACATTATTTTATAAATATAATATTTTATAAATTATAAATTTTAAATATAATAAATTTTAAA
TATAAATTTTTTCTTTTTTTTAATCAAAAAAAATATTTTTGTATCACAGCACATCCAACAAACCC
ATTATTTGAAAATCAAACTCATGGAACAGAGAAAAATTAAATAGATCTACAGACAAGATACAATT
ATCCAGATCGGATTATATTTATTTGCTACATTGTTGTCAATATGA
Found at i:306384 original size:30 final size:28
Alignment explanation
Indices: 306321--306391 Score: 99
Period size: 27 Copynumber: 2.5 Consensus size: 28
306311 AAAGGTCTTT
**
306321 ATAAATTCTTTATA-AATATAAATATAA
1 ATAAATTCTTTATACTTTATAAATATAA
306348 ATAAATTCTTTATACTTTATAAATATAAA
1 ATAAATTCTTTATACTTTATAAATAT-AA
306377 TATAAATTCTTTATA
1 -ATAAATTCTTTATA
306392 AATATTTTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
27 14 0.36
28 9 0.23
29 2 0.05
30 14 0.36
ACGTcount: A:0.49, C:0.06, G:0.00, T:0.45
Consensus pattern (28 bp):
ATAAATTCTTTATACTTTATAAATATAA
Left flanking sequence: Indices 305821 -- 306320
ATATTATTTATATATTAATATATTATATATTTATATATTATATATTATAATATTATAAAATATAT
TTATATATTATTTATTATTTATATTATTTATATAAAATATATTTATATATTATTTATTATTTATA
TTATTTATATTTATATTATTTATGATTTTTTAGATAAAATATATTTATATATTATTTATTATTTA
TATTATATTATTTATTATTTATATTATTTATTTATATTATTTATGATTTTTTAGAAATTATTTTT
TATAATTTTTATAATTATTATTATAATTATTATATAGATAGATAATTACTATATATACTATCTAT
ATAGTATATAGATTAGTATATAGAGATTAGTATATAGATAGATTATTTAGTAGATAAATATTATA
TTATATATTAAATATATATTAAATATTATATATAAATATTATATATTAAACAGATATATTTATTA
ATATATTTATTATAAATATCTTTATAAAATAAAATAAAGGTCTTT
Right flanking sequence: Indices 306392 -- 306891
AATATTTTTAAATATTTATAAATATTTTTATTTACCTATTTATATTTTTATGTACATATCTAATT
TTTATTTACATATTTATATTACATATTTAATATATTTTATTAAATATATTAAATTAAATATATTT
TAGTTTACATAACTTATATTATAATTCTATAATTTATATTATATTATAATTTATATAACAATTAT
ATATAATATAACAATTATATATAATTATAACAATTAGAACAATACTTTTTTATAATTTATAACAT
TATTTTATAAATATAATATTTTATAAATTATAAATTTTAAATATAATAAATTTTAAATATAAATT
TTTTCTTTTTTTTAATCAAAAAAAATATTTTTGTATCACAGCACATCCAACAAACCCATTATTTG
AAAATCAAACTCATGGAACAGAGAAAAATTAAATAGATCTACAGACAAGATACAATTATCCAGAT
CGGATTATATTTATTTGCTACATTGTTGTCAATATGAATGCGAAT
Found at i:306405 original size:10 final size:10
Alignment explanation
Indices: 306390--306421 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
306380 AAATTCTTTA
306390 TAAATATTTT
1 TAAATATTTT
*
306400 TAAATATTTA
1 TAAATATTTT
306410 TAAATATTTT
1 TAAATATTTT
306420 TA
1 TA
306422 TTTACCTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (10 bp):
TAAATATTTT
Left flanking sequence: Indices 305890 -- 306389
ATATTATTTATTATTTATATTATTTATATAAAATATATTTATATATTATTTATTATTTATATTAT
TTATATTTATATTATTTATGATTTTTTAGATAAAATATATTTATATATTATTTATTATTTATATT
ATATTATTTATTATTTATATTATTTATTTATATTATTTATGATTTTTTAGAAATTATTTTTTATA
ATTTTTATAATTATTATTATAATTATTATATAGATAGATAATTACTATATATACTATCTATATAG
TATATAGATTAGTATATAGAGATTAGTATATAGATAGATTATTTAGTAGATAAATATTATATTAT
ATATTAAATATATATTAAATATTATATATAAATATTATATATTAAACAGATATATTTATTAATAT
ATTTATTATAAATATCTTTATAAAATAAAATAAAGGTCTTTATAAATTCTTTATAAATATAAATA
TAAATAAATTCTTTATACTTTATAAATATAAATATAAATTCTTTA
Right flanking sequence: Indices 306422 -- 306921
TTTACCTATTTATATTTTTATGTACATATCTAATTTTTATTTACATATTTATATTACATATTTAA
TATATTTTATTAAATATATTAAATTAAATATATTTTAGTTTACATAACTTATATTATAATTCTAT
AATTTATATTATATTATAATTTATATAACAATTATATATAATATAACAATTATATATAATTATAA
CAATTAGAACAATACTTTTTTATAATTTATAACATTATTTTATAAATATAATATTTTATAAATTA
TAAATTTTAAATATAATAAATTTTAAATATAAATTTTTTCTTTTTTTTAATCAAAAAAAATATTT
TTGTATCACAGCACATCCAACAAACCCATTATTTGAAAATCAAACTCATGGAACAGAGAAAAATT
AAATAGATCTACAGACAAGATACAATTATCCAGATCGGATTATATTTATTTGCTACATTGTTGTC
AATATGAATGCGAATGCGTTAAAAATATACACAATGAAAAAAACA
Found at i:306436 original size:20 final size:20
Alignment explanation
Indices: 306413--306476 Score: 94
Period size: 20 Copynumber: 3.2 Consensus size: 20
306403 ATATTTATAA
*
306413 ATATTTTTATTTACCTATTT
1 ATATTTTTATTTACATATTT
* *
306433 ATATTTTTATGTACATATCT
1 ATATTTTTATTTACATATTT
306453 A-ATTTTTATTTACATATTT
1 ATATTTTTATTTACATATTT
306472 ATATT
1 ATATT
306477 ACATATTTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
19 17 0.45
20 21 0.55
ACGTcount: A:0.30, C:0.08, G:0.02, T:0.61
Consensus pattern (20 bp):
ATATTTTTATTTACATATTT
Left flanking sequence: Indices 305913 -- 306412
TTATATAAAATATATTTATATATTATTTATTATTTATATTATTTATATTTATATTATTTATGATT
TTTTAGATAAAATATATTTATATATTATTTATTATTTATATTATATTATTTATTATTTATATTAT
TTATTTATATTATTTATGATTTTTTAGAAATTATTTTTTATAATTTTTATAATTATTATTATAAT
TATTATATAGATAGATAATTACTATATATACTATCTATATAGTATATAGATTAGTATATAGAGAT
TAGTATATAGATAGATTATTTAGTAGATAAATATTATATTATATATTAAATATATATTAAATATT
ATATATAAATATTATATATTAAACAGATATATTTATTAATATATTTATTATAAATATCTTTATAA
AATAAAATAAAGGTCTTTATAAATTCTTTATAAATATAAATATAAATAAATTCTTTATACTTTAT
AAATATAAATATAAATTCTTTATAAATATTTTTAAATATTTATAA
Right flanking sequence: Indices 306477 -- 306976
ACATATTTAATATATTTTATTAAATATATTAAATTAAATATATTTTAGTTTACATAACTTATATT
ATAATTCTATAATTTATATTATATTATAATTTATATAACAATTATATATAATATAACAATTATAT
ATAATTATAACAATTAGAACAATACTTTTTTATAATTTATAACATTATTTTATAAATATAATATT
TTATAAATTATAAATTTTAAATATAATAAATTTTAAATATAAATTTTTTCTTTTTTTTAATCAAA
AAAAATATTTTTGTATCACAGCACATCCAACAAACCCATTATTTGAAAATCAAACTCATGGAACA
GAGAAAAATTAAATAGATCTACAGACAAGATACAATTATCCAGATCGGATTATATTTATTTGCTA
CATTGTTGTCAATATGAATGCGAATGCGTTAAAAATATACACAATGAAAAAAACAAAAGAATTAA
TTCAATTCAATTTAACCACAAAAATTCACTCTAAACTATATAAAC
Found at i:306476 original size:14 final size:13
Alignment explanation
Indices: 306457--306485 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
306447 ATATCTAATT
306457 TTTAT-TTACATA
1 TTTATATTACATA
306469 TTTATATTACATA
1 TTTATATTACATA
306482 TTTA
1 TTTA
306486 ATATATTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 5 0.31
13 11 0.69
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (13 bp):
TTTATATTACATA
Left flanking sequence: Indices 305957 -- 306456
ATATTTATATTATTTATGATTTTTTAGATAAAATATATTTATATATTATTTATTATTTATATTAT
ATTATTTATTATTTATATTATTTATTTATATTATTTATGATTTTTTAGAAATTATTTTTTATAAT
TTTTATAATTATTATTATAATTATTATATAGATAGATAATTACTATATATACTATCTATATAGTA
TATAGATTAGTATATAGAGATTAGTATATAGATAGATTATTTAGTAGATAAATATTATATTATAT
ATTAAATATATATTAAATATTATATATAAATATTATATATTAAACAGATATATTTATTAATATAT
TTATTATAAATATCTTTATAAAATAAAATAAAGGTCTTTATAAATTCTTTATAAATATAAATATA
AATAAATTCTTTATACTTTATAAATATAAATATAAATTCTTTATAAATATTTTTAAATATTTATA
AATATTTTTATTTACCTATTTATATTTTTATGTACATATCTAATT
Right flanking sequence: Indices 306486 -- 306985
ATATATTTTATTAAATATATTAAATTAAATATATTTTAGTTTACATAACTTATATTATAATTCTA
TAATTTATATTATATTATAATTTATATAACAATTATATATAATATAACAATTATATATAATTATA
ACAATTAGAACAATACTTTTTTATAATTTATAACATTATTTTATAAATATAATATTTTATAAATT
ATAAATTTTAAATATAATAAATTTTAAATATAAATTTTTTCTTTTTTTTAATCAAAAAAAATATT
TTTGTATCACAGCACATCCAACAAACCCATTATTTGAAAATCAAACTCATGGAACAGAGAAAAAT
TAAATAGATCTACAGACAAGATACAATTATCCAGATCGGATTATATTTATTTGCTACATTGTTGT
CAATATGAATGCGAATGCGTTAAAAATATACACAATGAAAAAAACAAAAGAATTAATTCAATTCA
ATTTAACCACAAAAATTCACTCTAAACTATATAAACTATATTAAA
Found at i:306485 original size:21 final size:21
Alignment explanation
Indices: 306459--306508 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
306449 ATCTAATTTT
*
306459 TATTTACATAT-TTATATTACA
1 TATTTA-ATATATTATATTAAA
*
306480 TATTTAATATATTTTATTAAA
1 TATTTAATATATTATATTAAA
306501 TATATTAA
1 TAT-TTAA
306509 ATTAAATATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 4 0.16
21 17 0.68
22 4 0.16
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.54
Consensus pattern (21 bp):
TATTTAATATATTATATTAAA
Left flanking sequence: Indices 305959 -- 306458
ATTTATATTATTTATGATTTTTTAGATAAAATATATTTATATATTATTTATTATTTATATTATAT
TATTTATTATTTATATTATTTATTTATATTATTTATGATTTTTTAGAAATTATTTTTTATAATTT
TTATAATTATTATTATAATTATTATATAGATAGATAATTACTATATATACTATCTATATAGTATA
TAGATTAGTATATAGAGATTAGTATATAGATAGATTATTTAGTAGATAAATATTATATTATATAT
TAAATATATATTAAATATTATATATAAATATTATATATTAAACAGATATATTTATTAATATATTT
ATTATAAATATCTTTATAAAATAAAATAAAGGTCTTTATAAATTCTTTATAAATATAAATATAAA
TAAATTCTTTATACTTTATAAATATAAATATAAATTCTTTATAAATATTTTTAAATATTTATAAA
TATTTTTATTTACCTATTTATATTTTTATGTACATATCTAATTTT
Right flanking sequence: Indices 306509 -- 307008
ATTAAATATATTTTAGTTTACATAACTTATATTATAATTCTATAATTTATATTATATTATAATTT
ATATAACAATTATATATAATATAACAATTATATATAATTATAACAATTAGAACAATACTTTTTTA
TAATTTATAACATTATTTTATAAATATAATATTTTATAAATTATAAATTTTAAATATAATAAATT
TTAAATATAAATTTTTTCTTTTTTTTAATCAAAAAAAATATTTTTGTATCACAGCACATCCAACA
AACCCATTATTTGAAAATCAAACTCATGGAACAGAGAAAAATTAAATAGATCTACAGACAAGATA
CAATTATCCAGATCGGATTATATTTATTTGCTACATTGTTGTCAATATGAATGCGAATGCGTTAA
AAATATACACAATGAAAAAAACAAAAGAATTAATTCAATTCAATTTAACCACAAAAATTCACTCT
AAACTATATAAACTATATTAAATAATAAAAAAAAAATAATTAAAA
Done.