Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: MK714017
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 517520
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Found at i:16268 original size:13 final size:13
Alignment explanation
Indices: 16250--16278 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
16240 TACAAAAAGA
16250 ATATTTGACAGAC
1 ATATTTGACAGAC
16263 ATATTTGACAGAC
1 ATATTTGACAGAC
16276 ATA
1 ATA
16279 AATGTCATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.31
Consensus pattern (13 bp):
ATATTTGACAGAC
Left flanking sequence: Indices 15750 -- 16249
GCGACAGGTGGGTCTTAAAAAGACGTCAATTGCGAGAAGAGGTCTTGCTGCTTTGACTTTAAATG
CTCTTGCTACGCGCTGAGTTATTACCGTAATGCATGATTAAATCAAAGAAAGTGATGACCATGCT
GCTTACGCGCTTAAGCAACAAACCAAGCGAAAAGGTAACTCCGCACTTTGTTAAGAACAGAAAAT
GTCGTTTTTGTGTGACAAAAGCTAAACATAGCAGTCGTCATCCTGAAATCGACTCATGCTTACTG
TGCCCACTACCTTTCCAATAACCCATACGCTTCGCTTTCTCCTGCACCCACGAGGGATTGATTGA
TCATAAAACAGATTGGTGAGCTGCTGCTTGATGAACCGCTGCTGCCGCCCTTCAATCGCCGAGAG
TTTCGCTAAGAACGTTCAAAACTCACTCTAAAGGGAAGAGTTAGCCGAACTCCCAGTAAGCCATG
AAGAGAATTCCTCTTGTCCGTTTTAAGTCGAACCTTACAAAAAGA
Right flanking sequence: Indices 16279 -- 16778
AATGTCATCAAAAAATGCCGGGAAAGCTTGCGCAAAGCGGATTCCAACAACTCGCCTAAATTCTG
CTTACCCAAAACCTATTCGAACAGGAGACTAGCCCGGCGCATGTCCACCAGGCTGGTTTTTAAGC
TCAGTCGGGGACACCTAATGAAGGTAGCTACGGGCAATAACAATGCACCAACCTTACCATATGGT
AAAATCAACCACTAGGAAAATCTAGAGCTAACTGGAGTTCTGTTCCATCCTTTGATAGAGTCACG
CACCTATTTGAGTGAAATCGTTTGGTGAAGCTTGTGAACTGAACACCTATTTAAATTCAGCTTGT
CGGGACAGATAATTGAATGAAGCTTGGAATGAATTCATTCATAAATGAAATTAAGACAATACGAC
AGAGCAAAATCTAGCAACTTTTGAATCTTTCTTGCCAAGCGGCTTCATTCGGGTCCTCCAGTAAG
GGGGGTAAAGTAGCGTCTACTAGCACAGGAAGTCGCTATCCAACC
Found at i:42360 original size:5 final size:5
Alignment explanation
Indices: 42350--42479 Score: 179
Period size: 5 Copynumber: 26.0 Consensus size: 5
42340 AGGTGCAAGG
* * *
42350 TACTT TACTT TACTT GACTT TACTT GACTT TACTT TACTT TACTT GACTT
1 TACTT TACTT TACTT TACTT TACTT TACTT TACTT TACTT TACTT TACTT
* * *
42400 TACTT TACTT TACTT TACTT TACTT GACTT GACTT TACTT TACTT GACTT
1 TACTT TACTT TACTT TACTT TACTT TACTT TACTT TACTT TACTT TACTT
* * *
42450 GACTT TACTT GACTT TACTT GACTT TACTT
1 TACTT TACTT TACTT TACTT TACTT TACTT
42480 ACTATTAGAA
Statistics
Matches: 111, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
5 111 1.00
ACGTcount: A:0.20, C:0.20, G:0.07, T:0.53
Consensus pattern (5 bp):
TACTT
Left flanking sequence: Indices 41850 -- 42349
TCCGCTGAGGACAAACTTGCTTTCTGTCAGTCACCTTGCAGCTAACCATCTTCGTGTCATCTTTT
CTTCTTCTGAGTGTCTTATCCAGGATCAGCGCACGGGAAGGATCGTTGGCCGGTTGGGAAAGCTT
TCTTATCCGGATATTCTTCTCTACATTCCTTTTTTTCAGCTGCTTCAGTAGGATAAGGAATGGGA
CCCGCCGTCGCCTGAGACATACACAACACACAGTGCAAGACTTCTTCCATTGTCTAGGGTATCTT
CCTGTATTTCATTCAGATGGGTTGAACAATTCATGTGATTGTTTACAGTTGGCAATTGTATGCTC
CCGGATTAAACATAAGAATCCAAATGAAAGTGTGCCTTTCTTTGGATTGATTTCTTCGTTAGTGT
TCACTTGTGATTTGACCTTATTTGACCTACGGCTGATTTAAGGATATATCACAGACAACTCATTT
TCATGAAGGGGTCCTACTCGAGTGCAGTCATTCACAGGTGCAAGG
Right flanking sequence: Indices 42480 -- 42979
ACTATTAGAAGTGGATGACTACAGTAGATACATCTGGCTTTCTTTACTTAGAGAGAAGTCCTAAG
CTCTTTCTAAGTTTCATATATAGAAAGTTTGGAAAATCAGTCAAATCTCCAGATCAAGAGGTTGA
GGTCTGAACTCCGGTGGAGAATACGTGTCAAGGGTGTTTGATTTCATGCTCCTGAAAATAGGAAT
CAAACGTGAGCTGTCGTGTGCTCATACTCTGCTGCAGAATGGGGTGTCCGAAAGAAAGAATCGAC
ACCTGGTGGAGTCTTGCAGGGCCGGGCCATGCTACAGGCCAAGGGAGTTCAAAATCTTTCTTCGA
GCGATCGTGCGAGACTTTTTCTCTTCTCATTCGAGATATTATGTGCAATTAAGAAACCTACTACT
GAATCTAATGAGTGAAAGTAAAGTCAAAGTGTTAGTTGGTCGTTGTTCGTTCTAAAATAGACATT
TTTTTCCATTTTTTTTTTCTACAATAATGGACTTTCATTTGTGAA
Found at i:59281 original size:27 final size:27
Alignment explanation
Indices: 59246--59318 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
59236 TAAATATCAG
*
59246 AAATACAAGTAGTTACCTTTTTAC-GAA
1 AAATACAAGTAGGTACCTTTTT-CTGAA
* **
59273 AAATACAAGTAGGTACGTTTTTCTGGT
1 AAATACAAGTAGGTACCTTTTTCTGAA
59300 AAATACAAGTAGGTACCTT
1 AAATACAAGTAGGTACCTT
59319 AACCTAATCT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 1 0.03
27 39 0.98
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (27 bp):
AAATACAAGTAGGTACCTTTTTCTGAA
Left flanking sequence: Indices 58746 -- 59245
AGGGGCGAGTACTACACGAGCTCGTAAGTCAAGTACGGAACGAGCCTTGTCTACGAAGCAGAGCG
ACCTCGTCTTGCTTGCTTCTGGCGAAGCTTCTAGCACTAGATAATAGGCATTCTGGTATGGCAGG
AATACTACTTTTTAGGTCGACCACTACATAGGAGCGATAGAGAAGCCAAGCCGTATAAAGGCGAG
CAGCCCTTATAGCAATAGCAAACGGCCTACTTATAGCCCTTTCTCCATTTTTTGCAGGGTAAACC
CCTGCCCGCCCTATTCACTATTCCAAAGTTTATGCGCGCGTCCCCGCGTTATAACATGTACTTGA
TTCTTCTCCAAAACAAATGGAACAAAGCCTTTCAACTGGTCTAATCGCCTTAACAACCATTTTGA
GTGTAGCAGTCTCGTGTCTTTTGGTAGTTACCTTTTTGTTCCTATCCCATATTTGGTCTTCAAGG
TGGCTACCCCAGGTCTTAAAGATTGAGTTGCTATATAAATATCAG
Right flanking sequence: Indices 59319 -- 59818
AACCTAATCTTTTATGGACCGTAAGCAATAAACCGAAAGTTTCTGTCAGTCTTATCGGAGTATTA
GCTTTAGATTCAAAGCGGGGAGGAACTGATTGTCTAATAGTTGTTTAGTAGATTAGTAGTTTATA
AACTATAGATTAGTTGGCCTGTTGAAGACACACCGAATCGAAAAACGGAGGGTTTGATAGTTGCA
CACTCGCTTAGTTACTGATCCAGTGCCGGGGAGGAGAACCCTATTTGATACTCAGGCTCAAGCAC
TAAAAAAGTGTGCCCTTTTTAGCAATTGTTTTGTGATGTGATGATAGATATCATATTACCTATTA
GATAAGGATAGGCAACGAAACAAACAGGAGCTTGAAACTCCACTACTAGAGACTGTTTCCTATAA
CCAACCTAATTCCTGTAACCAAACCTACTACTTGAACTAGTACCTTTTCTAGTACCAGCACGGGG
AGAACCTGTACCTCAAACTAGTTCCTATCACCTGTGCCTACCCTA
Found at i:59727 original size:18 final size:19
Alignment explanation
Indices: 59700--59735 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
59690 TAGAGACTGT
59700 TTCCTATAACC-AACCTAA
1 TTCCTATAACCAAACCTAA
*
59718 TTCCTGTAACCAAACCTA
1 TTCCTATAACCAAACCTA
59736 CTACTTGAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.36, C:0.33, G:0.03, T:0.28
Consensus pattern (19 bp):
TTCCTATAACCAAACCTAA
Left flanking sequence: Indices 59200 -- 59699
GTGGCTACCCCAGGTCTTAAAGATTGAGTTGCTATATAAATATCAGAAATACAAGTAGTTACCTT
TTTACGAAAAATACAAGTAGGTACGTTTTTCTGGTAAATACAAGTAGGTACCTTAACCTAATCTT
TTATGGACCGTAAGCAATAAACCGAAAGTTTCTGTCAGTCTTATCGGAGTATTAGCTTTAGATTC
AAAGCGGGGAGGAACTGATTGTCTAATAGTTGTTTAGTAGATTAGTAGTTTATAAACTATAGATT
AGTTGGCCTGTTGAAGACACACCGAATCGAAAAACGGAGGGTTTGATAGTTGCACACTCGCTTAG
TTACTGATCCAGTGCCGGGGAGGAGAACCCTATTTGATACTCAGGCTCAAGCACTAAAAAAGTGT
GCCCTTTTTAGCAATTGTTTTGTGATGTGATGATAGATATCATATTACCTATTAGATAAGGATAG
GCAACGAAACAAACAGGAGCTTGAAACTCCACTACTAGAGACTGT
Right flanking sequence: Indices 59736 -- 60235
CTACTTGAACTAGTACCTTTTCTAGTACCAGCACGGGGAGAACCTGTACCTCAAACTAGTTCCTA
TCACCTGTGCCTACCCTAAGATCCCGTTCCTGTACGGGAGCGGAAGCGAGAAAAGAAAAGCAGGT
TTTAGATACTAGACTAAAGACTAACGTCTGAGACTTGAAACTAGCAAACACGAGATACTTACTAG
AGCTCATGACGTAACTAGAACATAGCACGAAAAGAGGGATACGTATAGAGACCGAATCGGATGGA
TAGGAGCTTGATTGTAGGGGATGCTGGGGCGGGTCGAATTCTCTCTATCCAAGTGCAGCTACTGT
TTTTGAAGCACCCTCCAGGAGTTCTGGCGAAAGATCTCCTTCTAGGGACCTCTCTTATCTACCAA
CTTATGATGCTGGGGAAAAAAGGCCACTAAACAGATCTTCACCATATCTATCTTCAAATCCATTC
TGTGGAAATGCAGTGAGGCGATCGACCAAATACCCAGCTTATGAC
Found at i:93684 original size:15 final size:15
Alignment explanation
Indices: 93664--93697 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
93654 TCGACTGCCT
*
93664 TTCACTCCTCCGCTC
1 TTCACTCCTACGCTC
*
93679 TTCACTCCTACTCTC
1 TTCACTCCTACGCTC
93694 TTCA
1 TTCA
93698 TACAAGAGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.12, C:0.47, G:0.03, T:0.38
Consensus pattern (15 bp):
TTCACTCCTACGCTC
Left flanking sequence: Indices 93164 -- 93663
ATTCCCACTAGAATAGAAAAGAAAGAACTTACCACTAACTAGGAATCCTTAGGAGCGAGGGGTCC
TCTCAAGCGGCGAGGCCTGTCCCTTCAAGCGGCGGGGCCTCGGACACCTGCTTTCACTCGGGGAT
AGCGCTTTCAATCCGGTTTCCAAGGCGCGAGATGCTAAGGAAACTTGAGTGAAAGCGTTCCCCGC
TAGCAACCCCCGGAGGTGAATCAGAGCTGGCAGGGCCGCCCTCCCCCCTCGGGGATTCTTTCAGT
GTTCCGTGGGGGGTCGGGAGTAATGCTATAGTTATTCGTTCTCTTTTCTTTCAAAAGACCTAAAA
GGACAATAGAAAGCCTTATTTAGAGAGTTTAAAGACCTTAAGCTATCCCCGCCCGTCCAGACAGG
CTACTCGAAGAAAGAAGACTCAAGACTCATAAGGACAGGCATAAAGGAAGGAAAGAGAAAAAGTA
GTAGGAAAGGGGAACTCCTCTCTAGAGGAAGGGATTCGACTGCCT
Right flanking sequence: Indices 93698 -- 94197
TACAAGAGATTCTACGGAGCTAGCCATGCCAAGAAAAAAGCTAAGAGCAGACAGCGGCAGCGGCA
GCTGCAATGCATAATAGCAGAATCGGTTGCAGCTCTTGCTCTCTCTTCCGCTCTTCGTCTAGAAG
CACTAAAGGCAAGTAGCTACTCTTGCTAGGTTTAGAACAAGCTAGGCTCTATTAGAATGGATTAT
ATCGATCAGTTCTAGCTAGGGGCATGCAGTATAGAATCTCTCTTTCTTCCCTCTAGGGCCCTCCT
TATGAGGGAAGGGATCCCTGCTAGAGGTACTCGCCTAACTTCTTCTTTTTGAGGATTCTCAGTTG
CCTTTGTGCTTTTGAAGGTAATAGAAGACGATTGTAATATCGTCTGCATCGTCTGTAGGGTCTGA
TATGTATGATAAAATGGAGTTCTTGAGCTTCTGCTATTAGCTATAGTATCCTCCTTTGCGGCGTA
TAGGACTGGGTTCGCTTGGCTTTTTCGTCCTTGATGCCCGATTTA
Found at i:99241 original size:18 final size:18
Alignment explanation
Indices: 99209--99248 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
99199 CTGGTCGAAT
*
99209 TCAAGGATTCCAATCAGC
1 TCAAGGATTACAATCAGC
* *
99227 TCAAGGATTAGAATCAGT
1 TCAAGGATTACAATCAGC
99245 TCAA
1 TCAA
99249 CCCCACCCTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (18 bp):
TCAAGGATTACAATCAGC
Left flanking sequence: Indices 98709 -- 99208
TATTCCGAGTTTCAATGTCCATTGATTCAATGTGTGATTGAATGATCATCGATTTCCTTGTCCAT
CCCTTTCTTGCCTCAAAACAGCGTCTGTAAGTTAACTAAATGGAAAGAATTCTTGCCCCCTCCAG
GGAGAAAAGGTATTCCGACCCCCTTTCAGGGCTTGGTCTCAACTTCTCGGTAAGGGAATCGTTGC
TCCCTCCACCGACTTCGAAGCCAACCTCTTCGCTTCGCCCCTAGTGGTTCGGTTGCGTTCACTCC
TGTAGTCTCTACTCTACTATATATATATATTTTTTCAGTGGGGCAGCTTGAAGGAAGGCTAGAAG
GGAGTCCTGTTTAGCCAAGTAGCTGCTAAGAAAGCAATCAGTTCGCTTTAGATAGGTTGCAGCGG
ATAAATTATCCGCTGTTGATCCAAACCCCCTCTTAGTTCTCATCTCATTTCTCGTCTGATCGTCT
TCAAGATCGTCTGAACTGTATATGATACCTCTTCCCTGGTCGAAT
Right flanking sequence: Indices 99249 -- 99748
CCCCACCCTCAAAAGGCCATGCGAGCACACCATCCTCGGACTCATGTCCAGGAGGTGGGAGGGCT
ATTCACCCTCCGCACACTGAGCGCGTTTTCTCTCTTGTGGGAACCGCCTAGAGGTTCTCCAGGTT
AGATACCTGTTCACTGTGTTGCACAGTGGCATCTATACAGGTATAAGATGAAAGTCTTATATATT
GTATAGACTTCCACGATCGTCTACACTGCTCCGGCTTTCTTAGGCCTTTTCAGTGTTTTGATGAT
ATCTGATATAGAATGTATCAGACGCCCCCCCATGGGATAAATCCCATTTAGGAGAGTTGTGACTT
AGTGCAAAAGCCCTCTAGAGCTAAAGAATCAAAAAGTCTGCCTATATCAGATATCATCAAACTTT
TACAAATTGTTTGGCGCTCTGGGCCGATGCCCTATAGTCGCATGGCGGAGAGTATTTGAACACTC
TCAATGGCTAAAGGGGTTCCTGTTAAGGGCCCAATTAGTCATTTC
Found at i:105569 original size:15 final size:15
Alignment explanation
Indices: 105545--105574 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
105535 TTCCTACTAC
*
105545 CTACTGGGATAGGAA
1 CTACTCGGATAGGAA
105560 CTACTCGGATAGGAA
1 CTACTCGGATAGGAA
105575 GAGTTCAAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.17, G:0.30, T:0.20
Consensus pattern (15 bp):
CTACTCGGATAGGAA
Left flanking sequence: Indices 105045 -- 105544
ACCAGCGCATTAAGGAAGATCATGGGGAGTCATAAAGGGAAGCAGTTATATCTCCTAGCTTGGGG
GAAAGCCCCATTCGCTTAGCTACAGGAGCTAATAGCAAGAGAGGGCTACTTCTAATGGCTTCTAA
CGCAGTCTATCTTGATCTAACCCTACCAGTAGGAGGAAAGAAAGAACTACCTCATCCATTCTATT
CTTATCTTTCTTTATCTAACCTAACCTTCAAGAAGCCTTTTGGAAGACCTTAGAGAACCGCAAGT
GAGGTAAGGAAGTTCATGGTCAATCCTACTGGTAAGATATTATCTCTCCGGGTTCCAAACCTTTC
TTCTTATTAGTATTAGTAAGATAGGTGCTTAACGCCCTCGTGTGCTAGTCCGAATAAAGAGTCTA
TTTTCCGATGGCATTGTCACTTAGGACATCCATCGTTTTCGTCTTCTATAACCTTCCAGTCAGTC
CTAACCATAGGATCTATCTCTTATCCTTGCTTGGCTTCCTACTAC
Right flanking sequence: Indices 105575 -- 106074
GAGTTCAAAGTAAGCTAATTGGATCTCTCTCCTCCACTCTGGGCTAGCAGACAGACTGGTTTAGT
GGGATACTTAAACATCCAGAAAGTCCCGTAGTAAGATCGAGCTATGAAACCGCGTATTTTTCACC
TAAAGACAGATTCCGACCGGTGACTGACAGAAAAAGGAGATTGTTGCAACAATCCTTAGAAAAGC
CTATATGTGACATCAGGAGAGACTTGAGAGGCCTCTCTTCCCATATATCTGACTGGCAAAGGGAA
TAGAGCAACCATCTAATCCATTCCTTTCTTTCCTTGCTTAGCTTACGGGCTTGAAGAGGTTATTG
CCTGTACCATTAGCCTACGATTGTTGGCATATTAGACTAAGGGCTATAACTAGCTAGCTTAGCGG
GACTAGCTTGAATGGATTGCCTTTCATAGCTTACTAATAGATACTAGTAGGAACTACAAACAGCT
ATCAAGACCGGATCAACTAGATGTTCTATGCTTTCAGATCAAATC
Found at i:120870 original size:31 final size:31
Alignment explanation
Indices: 120800--120891 Score: 103
Period size: 31 Copynumber: 2.9 Consensus size: 31
120790 TATAACTACA
* * * **
120800 TGACTGACTACACTAATAGAAGTAGAGCGCTA
1 TGACTGACTACACTAGT-GAAGTATAGAGCGG
* *
120832 TGACTGACTACGCTAGTGAGGTATAGAGCGG
1 TGACTGACTACACTAGTGAAGTATAGAGCGG
*
120863 TGACTGACTGCACTAGTGAAGTATAGAGC
1 TGACTGACTACACTAGTGAAGTATAGAGC
120892 AGTATAGCAC
Statistics
Matches: 50, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
31 35 0.70
32 15 0.30
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.23
Consensus pattern (31 bp):
TGACTGACTACACTAGTGAAGTATAGAGCGG
Left flanking sequence: Indices 120300 -- 120799
GCTTTGTTTGGAGGGCTGTGGGAATGGAATAGCCATACCCATTTTCTGATTGGAACATTTTTCGC
CATAGCTATGTGAAGCTATACGACTCAGCTCTATTCTCTTAAAAAAGGCTTTTCCTTCGCTATTT
CCTCTCCCGCATTCGTTCTTTTCCAGAAAGATAGGGTAGTGTACCCCCCTCCCACCACTGTTTTC
ACCCTGCTCGATCGCCGAAAGGCCTTGGTACTTGTCTGGCGTTCACGCGTACAAAAATGCCTTCT
TGCAAGAAGCATATTCATCTCGATCTGCAACTATAGAAGGATCTTGAATTGGCTGTACCCCCACC
AGAAAGTGGGTAGTGCCTTTCCCACTCGGTCTTGATATGCGAATCTGAAATCTGAACGAAGGACT
GACTCGAACAGATCACAGGCCCCTGAGCTCCAAAGGAATCAGACTTTGACTTGAATAGTGAAAGA
AAGAAGTATAGCACAATGAGTGACTGCACTAGGACTATAACTACA
Right flanking sequence: Indices 120892 -- 121391
AGTATAGCACGGTATAAAGCCGTATAGCGCACTGACTAACTACACTACTAGAGTATAGCACGTAG
ACTGACTGACTACACTACTAGTTACCCATTATTCAATTCACCCAGAAGGAACCGGGGAAGGAGGG
CGGTCCGATCAATTTCTATCAAATTGAGAGCATACCACGGGGGTTTACTAAGCGAAGGGCCGAAT
CCTGTGTTTTAAGAGGAGTAGCCACTTGGCTTTTCCGAAGGTTAACTTCCTTTGATTGAAAACCA
AACCTTGGTCTCGTCCATTACCATTAGTAGCGGGAGAACGAATCCCGGTTCGGAACTAAATAATC
CAGTAAAAACGGAATCAGAGGATTATCCTATTGATTTTGAACCAACCTCACCTCGCATAGATCAC
GCCGACCTACCCACCCCGTGTGTGTGGGTGCCCAGTTCATCTCCCCTTTTTTAAACTTCCCCGCT
AAAGAACTTCTTTTACGGATTTTCCTTCTCCAAGCTTCCCGACAG
Found at i:132104 original size:13 final size:13
Alignment explanation
Indices: 132086--132111 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
132076 TAACGGTGGT
132086 ACTACTTCCCTCG
1 ACTACTTCCCTCG
132099 ACTACTTCCCTCG
1 ACTACTTCCCTCG
132112 CTCTCAATCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.46, G:0.08, T:0.31
Consensus pattern (13 bp):
ACTACTTCCCTCG
Left flanking sequence: Indices 131586 -- 132085
CACTCCCCGACTTTACTTGAAACAGATCAAAATCCACTCCCTATTTATTTAGTGCGGCTCTTTCC
CCCTCGATCTATCATGGTGTTGTTCACTCACTCCCTTTTTGAGTCCGTTCGCTCACTCCTTTCAA
TACTACTTCGTTTCCGCTCCTCTCGGGCCTAACGACTAGTTAGTCCCTTCGCTCGCTTCTAGAAA
GATGTTCTAGTTATAGAGGGAAATGCACGTTTGTGAGACCTGCTACTGCTGCTATGACTACTACT
ACTACTTCGGAGGCCCTGTCGGGGAGTTACATCAGGTCCTAAAAAGAAGGCTGGCGTTATTTTCA
TCAGAAGAAGCTACTACTACTTCCTTAGTTTGCTTTGAAGCAAGTAAAGGAACTCGAAAGGCTAA
TTGATGCAACCTGCCCGTTCTTTCTACTCTAGCAGCAATCATTCCCTCAACTGTCCCATTAAGGG
AATCCTCTTCATAAAGACCAATGCCGGGACTACTGTAACGGTGGT
Right flanking sequence: Indices 132112 -- 132611
CTCTCAATCGCCGAGGGCTCGCAATCCCAACCTGCTCTACTCCCACTTTGAGTCCTATGGATCCA
AACCAGAAGTTGTTGATGGATGATGGTGAACTGTTTGAGAATCCAGGTCGGTACCGCAGGTTGGT
TGGGAAGCTCAATTATCTCACTATTACCCGACCGGGCCTATGCCGTTAGTGTGGTAAGTCAGTTT
ATGGGATGCCCTAGAGTACCACATTGGGAGGCAGTCACTCGCATTCTTCGATACCTCAAACGTGC
TCCTGGTCTTGGATTGCTGTATCGAGCTAATGGGCATCTTAGAGTGGAAGGTTTTTCAGATGCTG
ATTGGGCGGGTTCTCCCTCAGATCGGAGATCAACCACTGGTTATTGTACCTTCTTGGGAGGTAAT
GTTGTCACGTGGAAAAGTAAGAAACAAACAGTGGTAGCTAGGTCCAGTGCTGAGGCTGAGTATAG
AGCTATGGCACATACAGCTAGTGAATTGACATGGTTACTACATTT
Found at i:140918 original size:31 final size:30
Alignment explanation
Indices: 140883--140953 Score: 72
Period size: 31 Copynumber: 2.3 Consensus size: 30
140873 TAGCTTGATT
*
140883 ATTGATAAGTCAAGGATGTGAGAAC-TACTGA
1 ATTGA-AAGTCAAGGAGGTGA-AACGTACTGA
* * *
140914 ATTGACAAATGAAGGAGGTTAAACGTACTGA
1 ATTGA-AAGTCAAGGAGGTGAAACGTACTGA
140945 ATTGAAAGT
1 ATTGAAAGT
140954 TCAGCAAGGG
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
30 6 0.18
31 27 0.82
ACGTcount: A:0.41, C:0.08, G:0.25, T:0.25
Consensus pattern (30 bp):
ATTGAAAGTCAAGGAGGTGAAACGTACTGA
Left flanking sequence: Indices 140383 -- 140882
AGTACTCCATATCCGCTTACTTCACTGCCTTCCCGCTACCAGAAGACCCCCTCTTCCTCTTACTA
AGCTTTTGAAGGACTCGGTTACCTACTTTTGAGGAAGCGATCCGGGAGTCTTCTTCGAAAAGTTT
TCGCTCTCCTCTCTCTTTGCCCTAACACAGTAATGGGCCAAGCTTTCGCAAACCTATCTTTCACT
TTATTGACTTCTAACTGAGAATTGTTTTCACTTCATATTATGCATATAGTTGAAGGCTTCTTTCT
TTCTGAATCAAATGGGGAGTTAGTTGATCGAGAAAGTCTCGCCCAAAGTCAAGTGCTTTAAGCTG
GTCTCCGATGCCTAATATCTTTGAGAACTGCTTTAGCTTTAGTAAGTAAGTTAGAATGGGATGAA
AGTTCTCTTCTTTGTTCACAAAAGGAAGGAAATGGAGTCGAAAAGACAGTATAAAAGCTGGGCTC
TTTTTCCTTCATTCTCCTTTGGGCGAGAACTGAGATAGCTTGATT
Right flanking sequence: Indices 140954 -- 141453
TCAGCAAGGGGATCAGATTGAATGAGAAAGCGGATTTCGCACTCGAGAAAAGAGTCTACTTCAAA
GAGAGGGAGGACTACGCTCTGCAAGTAGGCACCACTATTTATCATGTCATGTCAAGCCAGTCAAG
TCAGTAGGGAGGGCGAAGGAAACCCGTCAATATGGGTATACAGACTCGAGAAAGCAAGAAAAGAC
ATCTAAGGAAGATCGATAACTGAAGAGGAAGAAGCTGAACCAGAGGAACTCTTATTATGAGGAGT
CTAGTCATAAGATAAGTATGGACCTGCACGAATCTTTCCAGGAAGTCATTAGCCAGAAAGTCAAA
ATAGAGGAGTACGCGCATCGGCGTCTCAAGGGTGGAGGTCAGGACTCATTGATTTAAGATTCCGC
TTTGAACATTTCACAACTGATTCTTTAACAAGATTGTTTTAGGCTGAGTGCTGCCCGGGGGAATT
TTCTTTGTTCATTGCAAGGTCACACATGAATGGAATTCGACTGAA
Found at i:154003 original size:21 final size:18
Alignment explanation
Indices: 153958--153992 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
153948 GACTAAACCA
153958 AGGCCTTAGGTAATAATG
1 AGGCCTTAGGTAATAATG
153976 AGGCCTTAGGTAATAAT
1 AGGCCTTAGGTAATAAT
153993 TGAGATGCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.34, C:0.11, G:0.26, T:0.29
Consensus pattern (18 bp):
AGGCCTTAGGTAATAATG
Left flanking sequence: Indices 153458 -- 153957
GAACGGACAAGACAGACCAAAGACAAAAAAGGCGAACCTCCCTCCTGGCTTCTATCTTTCGGGCT
AGAGCAATGACTCCTTGAATCTTTTTCTTGCCTGGAGACAAAGGATGGAAGGAACCACAGGAAAT
TCATCCAACTTCGATCCCCTAAAGGCAAGTGCGTAGGCTATAGAATCCCAAATAGAGCGCCTTCG
GCTCTAAACAGCTACTGTGCTTATTTGGTCTATCAGCTACTCGGCCAGCTACTGACCTAATTGGG
AGCTTTTCAGTCAAGGTCGTCGAATTTAGAGGTCCTTTCTTTCGCAAGGGTCCAGATCATTCCAT
TGGGGAGAAAGCAGGAGTGATCCATATATAGATGAATAGTACCAGTAGAGCTTCAATGGAAGGGC
GGTGCTAGTGCTCTCACTTACGGAAAAAGAGGCTCCCGCATCAGAAAGAAGAGCGGCACCTCAAC
CAGCCACAGCCGCATTAACAGTTCGCGTGAAATCAGACTAAACCA
Right flanking sequence: Indices 153993 -- 154492
TGAGATGCCTTCAATTCAGACAAGAGATGACGCACGCTTCACAAGGAGGCTTGGAAATGGCGTAC
TTATTGCACCTGGCACTAAGAACTCGAGTGCCGCTGCTGCTACGGGGGAGATTTTTGAAAAGACA
GGAAGTGCTATTGGACTTGGACCCTTGCCAGTTAATAGCATTTGCCTTACCCGATTCCAAAAGGG
ATTGATTCCCGGGAAGGCAAATGCTACCTTGACAGAAGACTTGACTAAACTTCCATAACCTTGAA
TGAAAAAATAGAGATTTCGATATATCATTAAGGGAAGAACTATTCCTTTACTGATTGGAATGATA
TTATTGAAATTATATTCCTTTTATTGCTTGCACCTACCAGAAGGAGGAGAGATCCTTAATTACTG
ATATCGAGAAAGCAAGGACGCTATGAGTGCTCGCTAATGTCAGCCCTTTGATTGCTTACTTCGCT
ATCCAAGCGGGATGAGACTTTGCGAGAGTTTCCAGATGAGCAGGA
Found at i:181076 original size:20 final size:21
Alignment explanation
Indices: 181043--181083 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
181033 GTCAAATATC
181043 TCTTAATAAAGAAGCAAAAAA
1 TCTTAATAAAGAAGCAAAAAA
*
181064 TCTTAAT-AAGAAGGAAAAAA
1 TCTTAATAAAGAAGCAAAAAA
181084 AAAAATTCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.61, C:0.07, G:0.12, T:0.20
Consensus pattern (21 bp):
TCTTAATAAAGAAGCAAAAAA
Left flanking sequence: Indices 180543 -- 181042
GCAACAAGCCCTTCCTATTCTAATAAGTGGGCTTGCTTTTCCCTGAGAGACAACTTCCCAAACCA
TAAAGAACTGGACGCCCCTACCCTATCTGATTAAAGCTAAAGGTGAATTGCTTTGGGTTGTATTG
ATTTGTGTTGACTTGAGTTACCTAAGTCAGGCACATTTTCCATTACCGAATAATGCCTGCAGTAC
GAGTACCTGTGCAACAAGTCAGATAGATATTGACACAGCGAGTACATATATTGACCCATAAAAAA
GACTAGCGGGAAAGCACACAAAGCCAACAGCACTCTTAATATAGCTATCACCTTGCTGAGCTTGA
AGCCTTTTTTTGAATCCTAAAATGCTCTTGCTCCTTGATTTCACATAAACAGCGGAAGGATTTAT
ATCCAACCTAAACTATCTATCCTTAGAAGTAGGGCAAAAGAAAACCTACAAAGGGGGACACCCGA
AATTCATTGAAGGAAGAATATTACTATATGGGAAAGTCAAATATC
Right flanking sequence: Indices 181084 -- 181583
AAAAATTCTAAGACACCCTTTGCCGCCTGCTTGGAAAGAAGAATAGATTGATTCACCTAGCCGGG
AAGACGGAAAGGACAGAGATATAAAGCAATATAGCCTGCTCGGAAAAGAAAGCGCATCTCGCATA
TCGCATCGCATACCGGATATCTCATACCTACTTGAGAAAGAGTATCGGATATCGCATATCGAAGA
CACCTGCCCCTGACCTGTCCTATCTTAGAAAACTATATCATCAAAAAAACACGAAACGGATATGG
GGTTTCTTACCGCTTGACTTGCTTCTAGGCTTACGGAGAAAGGCGCATCGCATGGGTTCCAAACC
TTGTTGACTACAAGCGTTGACATACCACCGTTTTACTTTTCTTTCTTAGGGCCCGTTCGCGGCGC
ACTCCTATTCTCTCAACAAAGCTTCTTTAAAGGGAAGCCCTTTCTATCCCGCTTCCTCAAACATG
GACTTGCATATCTATCTCTTACTCAAGCAAAGCAAGCTATTACTA
Found at i:181084 original size:21 final size:21
Alignment explanation
Indices: 181043--181084 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
181033 GTCAAATATC
*
181043 TCTTAATAAAGAAGCAAAAAA
1 TCTTAATAAAGAAGAAAAAAA
181064 TCTTAAT-AAGAAGGAAAAAAA
1 TCTTAATAAAGAA-GAAAAAAA
181085 AAAATTCTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.62, C:0.07, G:0.12, T:0.19
Consensus pattern (21 bp):
TCTTAATAAAGAAGAAAAAAA
Left flanking sequence: Indices 180543 -- 181042
GCAACAAGCCCTTCCTATTCTAATAAGTGGGCTTGCTTTTCCCTGAGAGACAACTTCCCAAACCA
TAAAGAACTGGACGCCCCTACCCTATCTGATTAAAGCTAAAGGTGAATTGCTTTGGGTTGTATTG
ATTTGTGTTGACTTGAGTTACCTAAGTCAGGCACATTTTCCATTACCGAATAATGCCTGCAGTAC
GAGTACCTGTGCAACAAGTCAGATAGATATTGACACAGCGAGTACATATATTGACCCATAAAAAA
GACTAGCGGGAAAGCACACAAAGCCAACAGCACTCTTAATATAGCTATCACCTTGCTGAGCTTGA
AGCCTTTTTTTGAATCCTAAAATGCTCTTGCTCCTTGATTTCACATAAACAGCGGAAGGATTTAT
ATCCAACCTAAACTATCTATCCTTAGAAGTAGGGCAAAAGAAAACCTACAAAGGGGGACACCCGA
AATTCATTGAAGGAAGAATATTACTATATGGGAAAGTCAAATATC
Right flanking sequence: Indices 181085 -- 181584
AAAATTCTAAGACACCCTTTGCCGCCTGCTTGGAAAGAAGAATAGATTGATTCACCTAGCCGGGA
AGACGGAAAGGACAGAGATATAAAGCAATATAGCCTGCTCGGAAAAGAAAGCGCATCTCGCATAT
CGCATCGCATACCGGATATCTCATACCTACTTGAGAAAGAGTATCGGATATCGCATATCGAAGAC
ACCTGCCCCTGACCTGTCCTATCTTAGAAAACTATATCATCAAAAAAACACGAAACGGATATGGG
GTTTCTTACCGCTTGACTTGCTTCTAGGCTTACGGAGAAAGGCGCATCGCATGGGTTCCAAACCT
TGTTGACTACAAGCGTTGACATACCACCGTTTTACTTTTCTTTCTTAGGGCCCGTTCGCGGCGCA
CTCCTATTCTCTCAACAAAGCTTCTTTAAAGGGAAGCCCTTTCTATCCCGCTTCCTCAAACATGG
ACTTGCATATCTATCTCTTACTCAAGCAAAGCAAGCTATTACTAA
Found at i:195236 original size:5 final size:5
Alignment explanation
Indices: 195222--195292 Score: 88
Period size: 5 Copynumber: 14.2 Consensus size: 5
195212 AACGGAAACG
* * * *
195222 TACTT TACTT GACTT TACTT GACTT TACTT GACTT GACTT TACTT TACTT
1 TACTT TACTT TACTT TACTT TACTT TACTT TACTT TACTT TACTT TACTT
* *
195272 TACTT GACTT TACTT GACTT T
1 TACTT TACTT TACTT TACTT T
195293 TAAGGGTGCT
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
5 56 1.00
ACGTcount: A:0.20, C:0.20, G:0.08, T:0.52
Consensus pattern (5 bp):
TACTT
Left flanking sequence: Indices 194722 -- 195221
AGCACGCAGGATACTAACATGAAATTTGGACAAGAAAGAAGGGCATTCTCAGTATTTAGAAACAT
AGAGCAAAAAGCTGTTTGATAGAAAGTCGGATACGTTTGATAGTATGAAACCTTTAACCGAATAG
GACACCAAGCCAGCTTCCACTTGTGTCTCCTGGGCCGGTTGACCCTTTACCAAACCAAATAGGAC
AAGTCCTAACTAAGAAACCTAAGCTAAAAGCGCAAGTGGGGTGTATCTATAGTCGGCTTTGCCGC
TTCACAGCTCCACAATCCCGCTTCTTTTTTATCTAAAAGAAGCTTCGCAAAGTGCACTCTCAGTC
CCCTTCGTACGACAGGGCCCTGCCATTCTTCCCTCTATGGAACCAGGCCGAATCCCCAACTACGT
TATAAAAGGGGTCTTGGCAATCTGCCCAATATCGTATAAAGCTGCTGCTACTTCGTCCCCTTCGT
TGCCTGCTTCAATCAATCGTATTTCTGCTCGTGAAAACGGAAACG
Right flanking sequence: Indices 195293 -- 195792
TAAGGGTGCTTGGTTTAAGAAAGGAAATGAGGTGCTAGTCTCCGTTGATCACTTTCTTCATTGGA
AAATCCTACAAGGATGCAATTTGGTGCGATGTCGTACCTATAACGGACCGAACCCCCACCAATCA
CTCTGTCACCTCTTGCTTGGGCGACCATGGCAATTCGATCGTAAGGTGATTCTCTTTATTGAACA
AGAAAGAAAATAACACGCATACCTTTTGGTTGGAAGGATGCTGCGATACTGCTTTAAATACAAGG
CAGTGAACAGTAAACCAGAACGCTTATACAGTCTCACACCTAAAAGACGAAAAACAAAGGAAAGC
CAAACTTACAAGCTACGCTACAGATTAAGATAAGATCATCAGACCGGTAAGTTTCATCAAATGTT
GAAGGAATGAATTTCTTTTTCCTTCTTTCCGCTCTTCGCTTAGCTACACCGGCTTAGAGATGCCC
ATGTCCTTCATGGATCTAGGAGTTCATACGAGGCTAGCGGGATTC
Found at i:230985 original size:12 final size:12
Alignment explanation
Indices: 230968--230997 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
230958 GGAGAGGCAT
*
230968 CTGACTTTCTTA
1 CTGACTTTCCTA
230980 CTGACTTTCCTA
1 CTGACTTTCCTA
230992 CTGACT
1 CTGACT
230998 GAATCACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.30, G:0.10, T:0.43
Consensus pattern (12 bp):
CTGACTTTCCTA
Left flanking sequence: Indices 230468 -- 230967
AATATAAGAAAATCCAAGAAAGAGAATAGCTCCATAATATAATAAAAAACTACCATGAATTACAC
ACACGCAAGTAGTGGCTCGGCTAGAGGAAGAAGCCGGAGCCTATGCACTACCGAAGAATGGACCT
GATAGAATCCAATCGATTACATAAGATATGCCAAAACCACTTACTGGTCTTTCCGAACAGAATAG
CATAAAGAAAAAAAAAGAAGTCAAGTAGACTCGGAAAGAAAAGAGATAGTGAAACCCTCTCCCAC
CTTTTCTATCTATCCTTAGAAGTAGGACGAGTGTCCTACCTAATTCAATGATTAGAATAATGGAG
AAGGGAGAGGTCTTAAAAAAAAACCTATACTCCCACTTTCCTTTATTTGAGATTTCCAAAAAGTG
AGATTTCGCAACAAAAATGGGGTGGGCCCCAAAGAGTGAGCGCTCACTCTTTCTTTATGGGGAGA
ACCACATCTATTCAAAGGAAATGTTTCGGCCTGCAGGAGAGGCAT
Right flanking sequence: Indices 230998 -- 231497
GAATCACTTTTTTCAGTTGAAGGAGGTTTCTACAGGAAGAGTTGCGACTCAGCGTCGAGGCGGGC
GGGGGTTCATGACGAGTGGGCATGAACTGTAACCAAACAAACAAAAGTAAGCCAACCACGAATTC
CTGAACCGTAAAGGGAAGCGCCCTGTAAAGTAGTAAAGAGCCTCGCCTAAAGGACCAGACCCGGA
GCTGAGAACAAGATCGAAAGCGCAACTTCTCATTCGAAGCATGAAAGTGGTCAGGTCACTTAGAG
CCGGAAGAGATAGGAGTGGCCTTATAGAAGGTTGGGGCTTGCTCGAAATCTGTCAAATACGAGCC
CTTCTTTCTCTATTCAATCCAGGGCCTACCTCGATAGACCTGTGTCACAACGGCTGATCTTTTGA
GTGAGGGAAGCCGGAGCATTGGTCAAGAGAGAGAAAGAAGAGGAACTATAGATCGAGAAAGTCAC
ATTAGCTACACCAGACCAGACACACCTTTTTTTGTTATCCTATTT
Found at i:236731 original size:39 final size:39
Alignment explanation
Indices: 236676--236754 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
236666 CCCATCCTTC
*
236676 AATATCATGATTGGGTCGACCAGGCCAGATCATGAGTGA
1 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
236715 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
1 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
236754 A
1 A
236755 TAGAAAATCG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.32, C:0.19, G:0.28, T:0.22
Consensus pattern (39 bp):
AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
Left flanking sequence: Indices 236176 -- 236675
CGATTCTTTTCTCCGCTAATCACCCCTTCCCAACCAGCCCGCCCGATCGATCTTGTAAGATCGGC
TAATTCAAAGGGCTTAATCTGGTCCGAAGTTGTCGGAACGAATCGTTTGCTTTATCGAAAAAAGC
TTTCTTAGGGGGTCTTGGTTGGCCCCCTATTTTCAACCATTACAGCTGGCGTCGACCAGCTTTGC
GCGATACGGACGGGCACGAATAAGAGCGCAGGCAGCGGAAATGCAAAAGAGAAGAGCAAAGATTC
CCGACCCAGAGCATGTTATTGACTCAACCACAAATCTGTTGAATGAAGGTAGCTTGCTTACTCTC
AACCACTAGTTAGAAGGAAATCCCTTGACTTCGCTTATGCCCTTATCTTATGCAGTAAAGAAAGC
AAGTGAGGCGGGCTAAGATTCCATTCGAAGTAACGTAACAGGATTCGATCTTGCACCATCTTCAA
CTCTTCTCGGGATCCGGAGTTTTTCGAGAAAAGGTCCCATCCTTC
Right flanking sequence: Indices 236755 -- 237254
TAGAAAATCGAAAATGTATATAGCTGTTCCAGCTGAAATACTTGGAATAATTCTACCACTTCTAC
TAGGAGTAGCCTTTTTAGTGCTAGCTGAACGTAAAGTAATGGCTTTTGTGCAACGTCGAAAGGGT
CCTGATGTAGTGGGATCGTTTGGATTGTTACAACCTCTAGCAGATGGTTTGAAATTGATTCTAAA
AGAACCTATTTCACCAAGTAGTGCTAATTTCTCCCTTTTTAGAATGGCTCCAGTGGCTACATTTA
TGTTAAGTCTGGTCGCTCGGGCCGTTGTACCTTTTGATTATGGTATGGTATTGTCAGATCCGAAC
ATAGGGCTACTTTATTTGTTTGCCATATCTTCGCTAGGTGTTTATGGAATTATTATAGCAGGTCG
GTCTAGTAATTAGGGGGCGGCCGTTCGGTCGCCTATGATACTAGGACCAATAGGTAAAAAATGGG
TTTGTGCCACAGGTGTTGAACGATCTACTCTACACAGGTGTGGGC
Found at i:272662 original size:13 final size:14
Alignment explanation
Indices: 272640--272677 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 14
272630 AGCTATCGTA
*
272640 TCATACGATTCT-T
1 TCATATGATTCTAT
272653 TCATATGATTCTAT
1 TCATATGATTCTAT
272667 TCAT-TGATTCT
1 TCATATGATTCT
272678 CGGTGGAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 18 0.78
14 5 0.22
ACGTcount: A:0.24, C:0.18, G:0.08, T:0.50
Consensus pattern (14 bp):
TCATATGATTCTAT
Left flanking sequence: Indices 272140 -- 272639
ATTCCTTCCTCTTTCCTCTAAGCTAGAAGAATGATGAAACCTTCGTCCAGGCCTAACTCGAGTGA
GGCTTCTTCTATTAGCTAGGCTAGGTATCCCGATCGAGTATATGTCCAAGAAGGGGTCTTCCCCC
GAGTGAACTCTCAAGAGCAAGCCCCGCGCCCTCTTCTTCGACATAAGACTTTTGTCGCCTAATCT
TCCGTTGCCAAGATGAGGAAGGAAGTCGTGCGTTCTTTCCCCAATTCAGGACTGGTCCCCTGGCT
TTCCTATCCTCTATGTGAGGCAGTCCCTCCGGGTTGTCGGAGTTACCGGGCTAACTATTCACTGA
TTCCAGATTTCCCCTGCTGGGCTCGGAAGTCAAAGTCCCCACGCCATTCAACGATACGAGGTAAT
CCCGGTTCTCCCGATCTGCCTTGTAAGCCCGCTAACTCCTACGCCATTCCCGGTCGCCCGGTATG
GGCAGTTTACTTCCTATCTAGTCGCTCTAGTAGCTAGCTATCGTA
Right flanking sequence: Indices 272678 -- 273177
CGGTGGAAAACCGTCTATCCCTAGGACCCCGAATCAGACGATCTCTCAGATGCCTTTTTCTAGTG
AATTCCCCGTGCAAAAGCGTTCTACTCTCCCGTGCTTTCCTTGGGGTTTGGACCAAGATTCTTCC
CTCTGGATCGATACGATAGAGACCAGTTCGCGTCAATAAGGCATAAATGGGTCCCCTTTTAGGAG
AAGTGATTTGGGGCACCGAATATATGCCTTATTTGTATTATTAGTCAAAGACTAGCTCTATGAAA
TTGGCATAGATCTCGTATCGGTTCATTCAGCGCCATAACAGTTTTCGCATAATGTGCCGCTCCCC
AGTCGGGCATTCCTTCGTAAATATCTTAAATAGAGGACAGACACCTCCCCGGTTCTCCCTTTCTG
TCTTTCCAGGGTGGGACTCATCGGTATACCTTCCCTGTCCTTCGAGCTGCCTAAGTGAGTTTGCT
TCCCTTCGCTCCATAGACTTGCTTAGCATCCTTCCGTTGGATTGA
Found at i:326142 original size:5 final size:5
Alignment explanation
Indices: 326129--326260 Score: 255
Period size: 5 Copynumber: 26.4 Consensus size: 5
326119 TGAGTTAGGC
*
326129 TACTC TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA
1 TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA
326179 TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA
1 TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA
326229 TACTA TACTA TACTA TACTA TACTA TACTA TA
1 TACTA TACTA TACTA TACTA TACTA TACTA TA
326261 GGCTCCTTCA
Statistics
Matches: 126, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
5 126 1.00
ACGTcount: A:0.39, C:0.20, G:0.00, T:0.40
Consensus pattern (5 bp):
TACTA
Left flanking sequence: Indices 325629 -- 326128
CATTCTTCGCCTCCATCAAAGATGGTGGATCGTTATGTCTAAACTTCTTGGCGCCTCCCCTTACT
GACTAAGGCTAAGGTGGTGTCAATCAAGGTTCTCACATGAATAGACGTTTGAATATTCGCTTAGT
ACTTTCACCTTCGATCACTCGGATTCGTCGTTCACCTTCTCAACGAAGCCTACTCGAACTTCTCC
CTGCCACCATACCTGAATGAAAGAAACGAATAGCTAGAAAAACAGGCTATTCCATCGTTGGCATA
AGATGAACCGAGGAATCCAACCAAATAGGAATGAATAGCTATATATAAGGGGAACTGCTTGCATT
GATTCAATTGATTGGAAGCGGCGGTTATACATACAGACATAGTTTTCACTAGGGGTTTTTTCTGT
CCTGAGGGTTGGTCGAAGCAACCTCACCAGAAAGCCACTCTTCCAGAGTCTCGTCCATCGTCTGC
TTAGGCGACTATTTAATAGCCTTTAGCTCTGCCTGTGAGTTAGGC
Right flanking sequence: Indices 326261 -- 326760
GGCTCCTTCATCTGTTCTTTTTAAGAAAAACTCAACCTGGTTTCAATGAATCCCCAAAGAAGCCA
TGACCTATTTGATCCTTCAGCCTTCAGCATTGAGTCAAGAAAAGAAGAATTGGATCCGGGTGGAA
TCTTCACTTTCATGAGCAGGAGCTGGAGTTTAGGAATCGGGTGTAGATGCTGGCCATTCCATAGA
CGAGAGACCCGCTGACCCACTAGTGGTTTTCTAAGGGGAGTTGGTAAAAGACAACAGGTTCAAGA
CAAAGCGCACGGAGATGGAGCGAAAGCACAAGGCCAGTTCTCATCAACTGAGAGCTCCACTCCAA
GAGAGGGAAAGCAGCACAATCCGTGAGACCTATGAATGCTTTGAATGAGATCTATTAGGCCTTTG
ACCATTCCAAATCCATATAGAACAGTAGAGTCGAAGAGAAAGCGCCTTTGAAGGATATGGGAATC
CACTGCGCCTTCATCAACCAAATGGGAATCCAGGTGAGAGCCGTG
Found at i:359098 original size:14 final size:14
Alignment explanation
Indices: 359079--359108 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
359069 GAGCTATGTC
359079 TGAAAGTATATTAA
1 TGAAAGTATATTAA
359093 TGAAAGTATATTAA
1 TGAAAGTATATTAA
359107 TG
1 TG
359109 TAGGTACGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.17, T:0.37
Consensus pattern (14 bp):
TGAAAGTATATTAA
Left flanking sequence: Indices 358579 -- 359078
CAGCATTTGTTCCGTTTCCGGCTGGCCTATATTGCTTTCTCATCGCGGTATACTTGAAATCAATC
TTTGCCTATCATACTAAAGGGGGAAAGCGAATCGAAGTTGCTTGCGCGCTTCTTTCCTTTTCTAT
AAGTAAGGGGCTGTTCTCTACTGCATCTTATCCAGGACCCGATGCTTCGTCTCTTGTTGCTGCTT
CGGCGGATGCACTTTGTCTAGGAACCTCTTTATCTTATTAAGTATCAACCGATGGAACGGGGTCT
CCCTGTGCTTCAGATAGGGACAGAGCTCGAAACTCCCCAGCGAATGAGGTAAAGACAGAATGAAC
AGTTGGTCGGGCAACGATTCCGGTTGAAGCGGATCCATCCTATGCCTCATCAGTCTCTGGCGCGC
GTTGAGCTTTTTTCTTCCTTTCCGTCTTTAAACCCACCTCCCTATACTGCGAAATGAGTTTCATA
ATCAGTTGAAAAAGAACTAGAATGAACACCATCTGGAGCTATGTC
Right flanking sequence: Indices 359109 -- 359608
TAGGTACGCTTAGCGCTTGGTAGGTCAGTAGCAGAGGTTGTAGTATAGTAGTTCCAAATCCAACT
TCTGAAGCAGGGGATATCCGGTTCACTTTTCATAGGTTTTCCTAATCAAAAAGCATACTTGGAAA
ACTAGCAAACTAACAACTCTAGTTTATACTGAAAGGAAATGGGCTAGCCAAACCCGACAATAACA
GGCGAGAATGATTACGCGATTGCTGTTCAAAGAAGACAGGATTCACACCTTCCCTCAAGTAGACA
GGCAAGTCTGACGTGCTAGCTCAATGTTGTTCATTCTTTGCTAAAGAAATGGGGGTTTTCTCACG
ACTTTTGCCAGTCAATGGGTGGAACATTAGGTTCCCTTTCTCGTTTTCTGGTTAGGAAATAGCTT
CCTCAGCGATCTGCCTCATTGCAGGAGGAAGGAAGCGGAGCAACCACTGGAAGGAAGCCTAATGG
TATGATTTCAGACCATGCTTGGGGCGCTTCCTCCTTAGTTAGTGC
Found at i:362939 original size:14 final size:14
Alignment explanation
Indices: 362920--362947 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
362910 ATCGCCCTAT
362920 CAAGTCAAGTATGG
1 CAAGTCAAGTATGG
362934 CAAGTCAAGTATGG
1 CAAGTCAAGTATGG
362948 AATGTATTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.29, T:0.21
Consensus pattern (14 bp):
CAAGTCAAGTATGG
Left flanking sequence: Indices 362420 -- 362919
TAGAGTTAGTTATCCCTTATCATCCCTGGTCTTCCTCCTCTCTATGAGATGTGGGATCGACCCCG
CGAGCCCTTCCTCTTTCTACATCCTTTTGGATGATAAGGCATGCCTATCCATGTTTTATCCAGCC
TTTGCTCCACTATCAACCACCGGAATGGTTATTTTGCCTGCCCCGCTTTCCTCTCCCGCGACAAG
AGCTCGTTCGCCAAGTCCGAACTCAAACTTTATCGAAAATGACGGCTCTCTTCGATGCTAGCAAC
CGCCTTTGACCCTTTTCCGCTTCTTTCAATTTCCTTACATTCTAGCTGAAGGAGAGACTTTACCT
TTACTTAGAGAGGGGCAGCGGTAGTTCGTAGCTTGTCTTTCTTTGCTAAGTCAAAAGTGACGTGG
CGTGTAGTGAGCTTTCTAGCGGAAAGGCAGACTTGAAACTGACTTACAGCTTGCTTTGCTCTGGA
GGGAGCTTCCTGAGTCAGACCAATTCGGCCACCGAATCGCCCTAT
Right flanking sequence: Indices 362948 -- 363447
AATGTATTTATTAGGAAAGTGGCTGTTCACTCACTAAAAGAGCTCAACAAAGTCACTCCTTGAAC
AGAGGCCCGAGCCCTTTAAGGCAGGCTAGATGGATCAAATAGGTGTTCCGTGGGGTGCTATATTA
GTCCTTGCATTTTCATTGAAATAAAGAGTTGTAGACCAATACTCAAGATAAGAAATAGATAATCA
ACAATACTGGTCATTCCTTCTTCTTCTTCAAGCTCAAGATAGGGCACCTATTCATCAAAGACTTC
TATAAAGCGTTTTAACGAGAGTTTAAAAAACAAATAAAGGAATCAAGGGTCCCAAACCTTATTCC
ATAGTCGAAATCTGTGTGGCGTCAAATCAAAAAGGACGGTTTGTCGACCTATAACCTTGGCTCAG
TTGGTGGGTACGGTTCGCTCGCTAATTCAAGCCCTTACAGAACGCATCGCTTTCACTACGGTTTC
AGGGCAGGGCGTAAGGCAAGGGGATCTTGAATCAAAGAGTTCCTG
Found at i:387211 original size:5 final size:5
Alignment explanation
Indices: 387201--387253 Score: 106
Period size: 5 Copynumber: 10.6 Consensus size: 5
387191 TTTTCATTAC
387201 TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT
1 TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT TTTCT
387251 TTT
1 TTT
387254 ATAGGGATCA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 48 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTCT
Left flanking sequence: Indices 386701 -- 387200
TTTCGCTAGGCACCAAGGCTTCTTTGACTTCTAAATCAAGAGAAGGTTTCAGAACTCGGGCTAAT
TCCATTCCAGTCTTCTTAGCAGGGAGAGAAATGGATTGCTTTGGATGGTTCCTGCTTAAAGTAAG
GACTATGCTCTAAGCCCTTCCTTCCTTCAACGGTAACTGCAGCTAAGACTGCTTCTTCCTTGTTC
ACATTCGACCATGAGTTCAGAGTTGACAAGAGGGAGGGCGTACTTTTATTATGATTGATAGGCGG
ACTTCACTCCCTTTGAGCTAACAGCCAAGAAGAGTTCACATTCCACTTCCTTACCTTAAAACAAA
ACCATGAGCAGAGTGCCGCCGGAGTTTCTTCTTATTTCATCATTCCCATAGATTGCTAGTAGTTT
AGTTCCATTCGTTCGCTTTAGAAAGGGTGGTTACCCCTGGTCTTTCTCACCTTGGGCTTGAGCCA
GTAAAAATGGCTTAATCAAGAGAGAGAGAACCCCTTTTTCATTAC
Right flanking sequence: Indices 387254 -- 387753
ATAGGGATCAACTATATCCACTTTAAGTCGGTCTTACTCGGGTGAATTTCTACGCTTATCTCATC
TGCTAGCTCGCCTTCTTCTTTAACTAGTCTTTAGCATTCATCTTTCTATGAACGAACTGTGGCAT
TAACATGGCATTAACAAAGCATCAAGGGAGACCTTTCCTAGTGCTAATCTAATCACATTTCTTTC
GCTCTTTCTGGCTCCCGTGAGCACTTTTCTTTTTCAATTTCTTTCGATCGGACTTATCCGGGTTC
TAATGAATAAGTAGATTGCCGGGTGGTGAGCCCGAGCGAAGCGACCAGTAATTCTGTCTATGTTT
TGTTTGCTGATCCCGGGGTCTCCGGAGGGGAAAGATTCTATCCAGAAGGCGGGACCCTGAAATAA
ATTTGACTAAGTGATCAAATTGTAACCAATGAGGTGATACTTAGCCTGACTCGGAGCGAGCGCCC
CTCTCCCTCTGGGGTTATTGATGAACAGAAACATATCCTGCCCGC
Found at i:400838 original size:24 final size:23
Alignment explanation
Indices: 400799--400876 Score: 138
Period size: 23 Copynumber: 3.3 Consensus size: 23
400789 TTAGCCTATT
400799 GAGGGCTTGTCCTCTCAATCGCC
1 GAGGGCTTGTCCTCTCAATCGCC
*
400822 GAGGGCTTAGTCCTCTCAAACGCC
1 GAGGGCTT-GTCCTCTCAATCGCC
400846 GAGGGCTTGTCCTCTCAATCGCC
1 GAGGGCTTGTCCTCTCAATCGCC
400869 GAGGGCTT
1 GAGGGCTT
400877 AGAATCCCAC
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
23 30 0.58
24 22 0.42
ACGTcount: A:0.15, C:0.32, G:0.28, T:0.24
Consensus pattern (23 bp):
GAGGGCTTGTCCTCTCAATCGCC
Left flanking sequence: Indices 400299 -- 400798
AGGCCTGGCTTTCGCTACCTCTGTTACCGCTAGAAGTAAGGTACGTCCATTATGAATCCGAGTGC
TAGGCCGATACGGCATGCCTTGGTTGTGGAATGATGTGTGCTGTTGGAAGTGCAATTCAGGATGT
TGCAAAATGTAACAACAAAAGGTGTTCAGTTCACACTGGCATCTGTCTTGAAAAAGTCTAGATCG
GATTTCTATCCAGCAGGAGGAAGCTCTCTATTTCGATCAAAGACCCATCCCATGCTTGGTAAGTC
TACCCGAAAGGAAAAGCTATCCTTCGTTCTTTTACGTCGATTGGCTTAACCCGATTCTCTTTCTA
TTGGAAATGGAATTGAAGTGAAGGCCCAAGACTTCCACTTCTTCTCTATCTTCCAACAATGACAA
TTGAATCCTGATTTGTGGTTGGCGAAAAGAGAAAGGCAGACAATTCTGCAAAAGGAAAAAAGCAG
GATATTCCAGGAGGGCTTATTCGGTATAGGCTTACTTAGCCTATT
Right flanking sequence: Indices 400877 -- 401376
AGAATCCCACCCTGTGGCAAGCTTTATAATTTAGGCTATGGAGAGAGACCCAGCTAGACCTCCCA
TCTTCCATCCCGAAAAAGATCTAAGATTCAATCGTTGATGCCCGGTATTTTTGCCTATCCGCCGG
CTGGCCAATCCAAGCCTAGGCTGGTTTCAAAGTTGACAGGGAATCAGTTCCCTTGGCCTAGGTTC
AGTTCACTCGAGATCAGTGCTCAATGCTCTACTCAATCGCCGCTGTTTCCTAGCAGGACTCTCCC
CTACAGTATCGTCACCGCAGTAGAGTTTAACCACCAAGTTCGGGATGGATTGGTGTGGTTCCTCT
ACGCCTAGGACACCAGAATATCGAACCATGAACGAAGAAAGGCATGAGAGAAAAGCATATTGGCT
AGTCGTAGCTTGTTTTGACCTGCGCTTTGAATGAAGAAAATCCGACTTGGTCTCCTATCGTCGTT
TCGCTTTGGTCGTAGCTACACCTTGTTCGGTAGCTTCGTTATTTT
Found at i:414761 original size:5 final size:5
Alignment explanation
Indices: 414753--414829 Score: 154
Period size: 5 Copynumber: 15.4 Consensus size: 5
414743 CCCCGCCCTA
414753 TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG
1 TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG
414803 TATAG TATAG TATAG TATAG TATAG TA
1 TATAG TATAG TATAG TATAG TATAG TA
414830 AGGCGGTTAA
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 72 1.00
ACGTcount: A:0.40, C:0.00, G:0.19, T:0.40
Consensus pattern (5 bp):
TATAG
Left flanking sequence: Indices 414253 -- 414752
TATATAAAACCAATGAAAGTATTCGACTTCTTTCTTTTGGCACTATTTAGAGTCAAATCGGTCTA
ATGCCCCGCCCTATATAGTATAGTCAGGGGAAAGGATTCTACTTTTGATCTCCATCTCCCTTTAG
CCTTAGTAGGTAGGCCGCCTCTCGTTAAAGAGTGAATTCATGAACATTGAGTAAAGATAGGCAAG
ACGTGACTTCTTACATTACACGGGTTTGGCTTGAAGACAGGGATCTGGCTATATAGATTTTCTTT
TACGAGGGGATATCCGGGAAAGGATGTCATTACTTACTTTCTTACTGCCTTTCAAGTTTATAATA
GATTCGATCTTGCTGCTAGGCGCATGTAGGTTTACTTATCCTCACCTTCCGTACCGTAGGCTTCT
CACCGGCTGTCTTTCCTGGATCAACTGGTGCTCATAGGCAGGGACTAATGCTTAGCTTAATGAAT
GGCTCAAGCTAAAGATAATAGGACAAAGATTCAAGCCCCGCCCTA
Right flanking sequence: Indices 414830 -- 415329
AGGCGGTTAAAGATTCTATTCACTCCCCTACTAAGTCAAGGGGGATCGAGATTCAAGTAATCGTA
ATTTCCTATCACTCACTCAAGCTAATTGCATTTCCTCAGTTAAGCTCTTCCAAATCGGTTTGGCA
CCTCGATATCGGCTCTTCTCCACCTGGGGCTGGCTGTACTATGTTCCAAGAAAAAGGATTTTCTT
ACTTTTGAGACTGAGCACAAACCTCCTCTCCTTAACAGTCGAGTCTCCTTCGGACCCTGACTTAA
GAGCTTTAATAGCTTAGCTCATCTTCGGGCATTTCGCCGTCTTGGTTGGTCGACAAGAGGGGTTG
GGAATAGGAATAGTTGAAGAGCGAAGCAAACCTCCGGTGAAGGAGAGGAACCTTCGAACTTCAAA
GTAAGAGCGAGGAGGAAGAAAAGGCCATTTACTATAGAGAGTCTGCCAGAAAATATTCATGATTT
GGAAGCCCCTATCAGGATCGAGGGAAGGGGAAAGCCTGACCAGAA
Found at i:415361 original size:15 final size:17
Alignment explanation
Indices: 415331--415366 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
415321 TGACCAGAAA
415331 GACTTTGAGCTTGCTTT
1 GACTTTGAGCTTGCTTT
415348 GACTTTG-G-TTGCTTT
1 GACTTTGAGCTTGCTTT
415363 -ACTT
1 GACTT
415367 AGTAGGGGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 4 0.21
15 7 0.37
16 1 0.05
17 7 0.37
ACGTcount: A:0.11, C:0.17, G:0.22, T:0.50
Consensus pattern (17 bp):
GACTTTGAGCTTGCTTT
Left flanking sequence: Indices 414831 -- 415330
GGCGGTTAAAGATTCTATTCACTCCCCTACTAAGTCAAGGGGGATCGAGATTCAAGTAATCGTAA
TTTCCTATCACTCACTCAAGCTAATTGCATTTCCTCAGTTAAGCTCTTCCAAATCGGTTTGGCAC
CTCGATATCGGCTCTTCTCCACCTGGGGCTGGCTGTACTATGTTCCAAGAAAAAGGATTTTCTTA
CTTTTGAGACTGAGCACAAACCTCCTCTCCTTAACAGTCGAGTCTCCTTCGGACCCTGACTTAAG
AGCTTTAATAGCTTAGCTCATCTTCGGGCATTTCGCCGTCTTGGTTGGTCGACAAGAGGGGTTGG
GAATAGGAATAGTTGAAGAGCGAAGCAAACCTCCGGTGAAGGAGAGGAACCTTCGAACTTCAAAG
TAAGAGCGAGGAGGAAGAAAAGGCCATTTACTATAGAGAGTCTGCCAGAAAATATTCATGATTTG
GAAGCCCCTATCAGGATCGAGGGAAGGGGAAAGCCTGACCAGAAA
Right flanking sequence: Indices 415367 -- 415866
AGTAGGGGAGGAAAGCGACCCTCCAGAATATGGTCTACCTTACCCCGTCTCGGGCTTTCTAGATC
CCTCAGAACATAGTCTTTCCAGCCTTTCCGGAGGTTCCGAACCTATGAGATTTCACCGGGCTTTC
TTTTGTGAACTCTTTCGGTACTGCTTTTTGTTAGCAGCTCTTGATCTTGAAGGTGTGCTGGCTGA
TGAATCTCTTTCCGGGTTCTCTCTATCTGCCTTTCCTGGGTCCTGAAGTTCATTCTAGTCTGGCA
AGGATGGAGGTTGAAGGAGAGTTGAACGAAGGGTCTACTCAAGCGAATGAGAGCGAGCAGAATAA
CAATAAGAGAATAGCCGTCCTCGAATTATGTTAGGGGGTCTTTCACTTTCAAATCGATATGAGAT
CCGAAGCCTTCATAAAATAGGGCATTCCTTAGCTTTACTTTAGAAGAGAAGGTAACCATATTCAA
AGACGCAGCCATAGAGCATGAGCCTTCGTTGCTACTCTACTACTT
Found at i:426359 original size:15 final size:15
Alignment explanation
Indices: 426339--426502 Score: 229
Period size: 15 Copynumber: 10.9 Consensus size: 15
426329 ACCCTTATTT
426339 ACTTGACTTTACTTG
1 ACTTGACTTTACTTG
426354 ACTTGACTTTACTTG
1 ACTTGACTTTACTTG
*
426369 ACTTTACTTTACTTG
1 ACTTGACTTTACTTG
426384 ACTTGACTTTACTTG
1 ACTTGACTTTACTTG
* * *
426399 ACTTTACTTGACTTT
1 ACTTGACTTTACTTG
* * *
426414 ACTTTACTTGACTTT
1 ACTTGACTTTACTTG
*
426429 ACTTGACTTTACTTT
1 ACTTGACTTTACTTG
*
426444 ACTTGACTTTACTTT
1 ACTTGACTTTACTTG
426459 ACTTGACTTTACTTG
1 ACTTGACTTTACTTG
*
426474 ACTTTACTTTACTTG
1 ACTTGACTTTACTTG
*
426489 ACTTTACTTTACTT
1 ACTTGACTTTACTT
426503 TACTCAGATT
Statistics
Matches: 140, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 140 1.00
ACGTcount: A:0.20, C:0.20, G:0.09, T:0.51
Consensus pattern (15 bp):
ACTTGACTTTACTTG
Left flanking sequence: Indices 425839 -- 426338
TAGAGTCGGGAGCCGCATAGATAGGCACGATAGAAGGAAAAAAAGGCCTTGGCTTTAGTCCCTAT
GTCCCGTACCCTTTCCCTTTGGGTAGGGAATCCACAGGAAGAAGCAGGAAATCACCCGAGGAATG
CCTCTATTTATGCTTGGCCGCAGGAGGAGCCCATTTCTTTCTTTTACCCCTATTCCAGCTCAGAG
GAAAGAGGCACTGGGACCAGTCCTCTATTTAGGAACAATACCAACCTACTCTGTTAGCAGTTAGC
AAGTGATTCGATAAAACAAAAAAGATGTTATTTACTAGGATAGGTGGTTCGGAATTCTAGTGATA
GTTACCTCGGGTTTTCTTCTGAATTTCATTAATGGCAGGACAAGTCCACCTTTCTCATCCCTTAC
AACATAGGGCTTACCGGACTAACTCGGGTTTACCGGGGCAGCATACCTTCTCAGAGTTAGCGGGG
TTCCTTCTACCTACTTTCGTTTCGAGGTTAACGGGACCCTTATTT
Right flanking sequence: Indices 426503 -- 427002
TACTCAGATTGCTAGCGAACTACCGGGATACCTAGATAATATAAGAAGACTCACCCTTAACTAGA
TAAAGCTAACTGGACGAAGGTTTAATCATTCTTTTAGCTCAGCTTGGGGCCATACTCTATTAGGG
CAACCTATTAGATTAAACAACATATTCTCTTCCAAAAGAGGTTGTAGAAAAAGAGCGGTTGATAC
CAGGGGAACAGTCCTACAAAGGAAATGCACCAATGAATGCCTATAAAAGATAGCATAGAGAAAGA
AGCACCGAGTCTCTTACACAATCGTTTCGGTACTCAGATCGGTGGGTAGGGAAAGACCTCCATAG
CCAGATACCTAGCTAATAGAAAGGGAAGCACTTAGCACACATACAGGATTCGCCTCACTCTATTC
CTGACTGGCGGCAGGAGAGGGAGGACTTGGGGAGCTCAGCTGGGATCAGAGGGGAACGACCTCTT
CTGGTAAACAATCAGTTATGGACTCAGATATAATGCTCGTACAAC
Found at i:426370 original size:25 final size:25
Alignment explanation
Indices: 426336--426506 Score: 252
Period size: 25 Copynumber: 6.6 Consensus size: 25
426326 GGGACCCTTA
426336 TTTACTTGACTTTACTTGACTTGAC
1 TTTACTTGACTTTACTTGACTTGAC
426361 TTTACTTGACTTTACTTTACTTGACTTGAC
1 TTTACTTG-----ACTTTACTTGACTTGAC
*
426391 TTTACTTGACTTTACTTGACTTTAC
1 TTTACTTGACTTTACTTGACTTGAC
*
426416 TTTACTTGACTTTACTTGACTTTAC
1 TTTACTTGACTTTACTTGACTTGAC
*
426441 TTTACTTGACTTTACTTTACTTGAC
1 TTTACTTGACTTTACTTGACTTGAC
*
426466 TTTACTTGACTTTACTTTACTTGAC
1 TTTACTTGACTTTACTTGACTTGAC
*
426491 TTTACTTTACTTTACT
1 TTTACTTGACTTTACT
426507 CAGATTGCTA
Statistics
Matches: 137, Mismatches: 4, Indels: 10
0.91 0.03 0.07
Matches are distributed among these distances:
25 112 0.82
30 25 0.18
ACGTcount: A:0.20, C:0.20, G:0.08, T:0.52
Consensus pattern (25 bp):
TTTACTTGACTTTACTTGACTTGAC
Left flanking sequence: Indices 425836 -- 426335
AACTAGAGTCGGGAGCCGCATAGATAGGCACGATAGAAGGAAAAAAAGGCCTTGGCTTTAGTCCC
TATGTCCCGTACCCTTTCCCTTTGGGTAGGGAATCCACAGGAAGAAGCAGGAAATCACCCGAGGA
ATGCCTCTATTTATGCTTGGCCGCAGGAGGAGCCCATTTCTTTCTTTTACCCCTATTCCAGCTCA
GAGGAAAGAGGCACTGGGACCAGTCCTCTATTTAGGAACAATACCAACCTACTCTGTTAGCAGTT
AGCAAGTGATTCGATAAAACAAAAAAGATGTTATTTACTAGGATAGGTGGTTCGGAATTCTAGTG
ATAGTTACCTCGGGTTTTCTTCTGAATTTCATTAATGGCAGGACAAGTCCACCTTTCTCATCCCT
TACAACATAGGGCTTACCGGACTAACTCGGGTTTACCGGGGCAGCATACCTTCTCAGAGTTAGCG
GGGTTCCTTCTACCTACTTTCGTTTCGAGGTTAACGGGACCCTTA
Right flanking sequence: Indices 426507 -- 427006
CAGATTGCTAGCGAACTACCGGGATACCTAGATAATATAAGAAGACTCACCCTTAACTAGATAAA
GCTAACTGGACGAAGGTTTAATCATTCTTTTAGCTCAGCTTGGGGCCATACTCTATTAGGGCAAC
CTATTAGATTAAACAACATATTCTCTTCCAAAAGAGGTTGTAGAAAAAGAGCGGTTGATACCAGG
GGAACAGTCCTACAAAGGAAATGCACCAATGAATGCCTATAAAAGATAGCATAGAGAAAGAAGCA
CCGAGTCTCTTACACAATCGTTTCGGTACTCAGATCGGTGGGTAGGGAAAGACCTCCATAGCCAG
ATACCTAGCTAATAGAAAGGGAAGCACTTAGCACACATACAGGATTCGCCTCACTCTATTCCTGA
CTGGCGGCAGGAGAGGGAGGACTTGGGGAGCTCAGCTGGGATCAGAGGGGAACGACCTCTTCTGG
TAAACAATCAGTTATGGACTCAGATATAATGCTCGTACAACTCTT
Found at i:426503 original size:10 final size:10
Alignment explanation
Indices: 426336--426506 Score: 216
Period size: 10 Copynumber: 17.1 Consensus size: 10
426326 GGGACCCTTA
*
426336 TTTACTTGAC
1 TTTACTTTAC
*
426346 TTTACTTGAC
1 TTTACTTTAC
*
426356 TTGACTTTAC
1 TTTACTTTAC
*
426366 TTGACTTTAC
1 TTTACTTTAC
*
426376 TTTACTTGAC
1 TTTACTTTAC
*
426386 TTGACTTTAC
1 TTTACTTTAC
*
426396 TTGACTTTAC
1 TTTACTTTAC
*
426406 TTGACTTTAC
1 TTTACTTTAC
*
426416 TTTACTTGAC
1 TTTACTTTAC
*
426426 TTTACTTGAC
1 TTTACTTTAC
426436 TTTACTTTAC
1 TTTACTTTAC
*
426446 TTGACTTTAC
1 TTTACTTTAC
*
426456 TTTACTTGAC
1 TTTACTTTAC
*
426466 TTTACTTGAC
1 TTTACTTTAC
426476 TTTACTTTAC
1 TTTACTTTAC
*
426486 TTGACTTTAC
1 TTTACTTTAC
426496 TTTACTTTAC
1 TTTACTTTAC
426506 T
1 T
426507 CAGATTGCTA
Statistics
Matches: 146, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 146 1.00
ACGTcount: A:0.20, C:0.20, G:0.08, T:0.52
Consensus pattern (10 bp):
TTTACTTTAC
Left flanking sequence: Indices 425836 -- 426335
AACTAGAGTCGGGAGCCGCATAGATAGGCACGATAGAAGGAAAAAAAGGCCTTGGCTTTAGTCCC
TATGTCCCGTACCCTTTCCCTTTGGGTAGGGAATCCACAGGAAGAAGCAGGAAATCACCCGAGGA
ATGCCTCTATTTATGCTTGGCCGCAGGAGGAGCCCATTTCTTTCTTTTACCCCTATTCCAGCTCA
GAGGAAAGAGGCACTGGGACCAGTCCTCTATTTAGGAACAATACCAACCTACTCTGTTAGCAGTT
AGCAAGTGATTCGATAAAACAAAAAAGATGTTATTTACTAGGATAGGTGGTTCGGAATTCTAGTG
ATAGTTACCTCGGGTTTTCTTCTGAATTTCATTAATGGCAGGACAAGTCCACCTTTCTCATCCCT
TACAACATAGGGCTTACCGGACTAACTCGGGTTTACCGGGGCAGCATACCTTCTCAGAGTTAGCG
GGGTTCCTTCTACCTACTTTCGTTTCGAGGTTAACGGGACCCTTA
Right flanking sequence: Indices 426507 -- 427006
CAGATTGCTAGCGAACTACCGGGATACCTAGATAATATAAGAAGACTCACCCTTAACTAGATAAA
GCTAACTGGACGAAGGTTTAATCATTCTTTTAGCTCAGCTTGGGGCCATACTCTATTAGGGCAAC
CTATTAGATTAAACAACATATTCTCTTCCAAAAGAGGTTGTAGAAAAAGAGCGGTTGATACCAGG
GGAACAGTCCTACAAAGGAAATGCACCAATGAATGCCTATAAAAGATAGCATAGAGAAAGAAGCA
CCGAGTCTCTTACACAATCGTTTCGGTACTCAGATCGGTGGGTAGGGAAAGACCTCCATAGCCAG
ATACCTAGCTAATAGAAAGGGAAGCACTTAGCACACATACAGGATTCGCCTCACTCTATTCCTGA
CTGGCGGCAGGAGAGGGAGGACTTGGGGAGCTCAGCTGGGATCAGAGGGGAACGACCTCTTCTGG
TAAACAATCAGTTATGGACTCAGATATAATGCTCGTACAACTCTT
Found at i:453198 original size:22 final size:23
Alignment explanation
Indices: 453155--453198 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
453145 CCGCTCTTAT
* *
453155 AGAGTGATCGGATTTCCCAGATA
1 AGAGTGATCGAATTGCCCAGATA
453178 AGAGTGATC-AATTGCCCAGAT
1 AGAGTGATCGAATTGCCCAGAT
453199 TGTTTCGCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.25
Consensus pattern (23 bp):
AGAGTGATCGAATTGCCCAGATA
Left flanking sequence: Indices 452655 -- 453154
CTCAGCCTAGTATTGGCATTTTCTCAGCCTAGTTTCGTAAAGGCGCTACTGTTGTACAGGAGAGA
GCCTTTTTCCATAGGGTCGGGTAGAGATCATAGGTAACCGACTCCAACTCCCTCATCTGATCTCT
CTCTCGTAACGGCCCTGTCAGAGGCGTTGGTCATGGGATAAAGGCTTGGAAGTAGTGAAGTGAGA
GAAAGGATCTCCCGGCCACGCACCTTTTGCCTTGGTTTGCCCACCAGCAGTTGATTACCCTATAA
ACAGGCACAGCAGATCAAACAAATCAACATGATAGCTTTCTATAGGCCGACGGGCGAAACTCTTT
CTCATTGCCATCATATGGATAAGCCAGGTATCCGGAAGATTGGACTCGCTCCTATAGTTTTGTAC
TGTGAGGAAGTTGGAGCCCAATGAAATGAGCCCTTAGCACGGGCGTCCGGTGGTGGGCACTCTGA
CTGTGACTCCCAAACGTGAAGATATGATTCTGACTCCGCTCTTAT
Right flanking sequence: Indices 453199 -- 453698
TGTTTCGCCTTCTTTCGGGGTTGTTACTGACCGGAATTGCGCACCTGAGTGCACAGCCTTTTCCC
TTGGTGTTGGGGAATCGTACTCACTCTATATCTCACTTGGTAGGCCAGGTTGTTTTAAACCGTTG
TTTAGCTCCGCTCGCCATGAACATGCTTCTTCCCCTCCGCCGTGTTCCCGGCACTATCAAACGAA
GGGGGAATCGCAACCTGGATGATAGGAATAAGCCCCTGATCGAATCGAACAAATGATGGAGAATA
CGATAGAGTGCTATTGATTTTGATACCTGTTATTCTTCACCACCAACATCCTTACTCTCACTTAG
ACTTTCACTGTCACTTAGACAGACAGCAGGCAACCCTACTAGTAGAACTGGTGGAAATGGGACAG
CGTATCTACTGGTACTGGACCCACTACTGATGCCTCGGTATGTTCACTCACTAAAACTAGCTCGG
GACCACCTGATACTGATGCCCAGGGTCTCTTTGGATAAACACCAT
Found at i:464535 original size:24 final size:24
Alignment explanation
Indices: 464506--464551 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
464496 CCTCTGATTA
*
464506 TTGAATCAAGTCTTTCTTGTTGCT
1 TTGAATCAACTCTTTCTTGTTGCT
*
464530 TTGAATCAACTCTTTTTTGTTG
1 TTGAATCAACTCTTTCTTGTTG
464552 AGTGGAAGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.17, C:0.15, G:0.15, T:0.52
Consensus pattern (24 bp):
TTGAATCAACTCTTTCTTGTTGCT
Left flanking sequence: Indices 464006 -- 464505
GGATCTCTTCTTAGAGAGATGTGGGCATCTAATCTATCTTGCCTTGACAGCATGAACTTCATGTT
TCAGAGAATCGGGGAAGGTGCTTGGCAGATGATGAGAGAGAGCGAAGCGCTTGCCTGTCTATGGT
TCTATAGAAGAGAGGAGAGATGGTGGAATAGAAAGTCGTGGATCAGTTGATCAGCTTTCTTTCTT
TCTCTTCCGATCTCGAATTCAAGCTTTCAAGAAGGAGAAATAGAAAGAGGATTCGTAGATCACTC
CCGGAGTCTTATATTTAAATATCTACTCCAACTGATAAGAAGAAGGCGCTCAGTTAACGGGATTG
GCTCGAAAGCGAGGATGATCGTCAAATGCCCCATGTTTCAGCTTCTCAATCGATGTTCTCGATGC
CGGGAACGCTCTCTGTCCTTTTTGTAAGCACCAAGTATCTTTCTCAATATCTTTAACATAAGGAA
AGGACACTCTCTGATGCTAGTTGTTCTTCTTCTTTCCTCTGATTA
Right flanking sequence: Indices 464552 -- 465051
AGTGGAAGTAGGAATGGAGTGGCTCATGCCAGACCTGAGAGATCATCCTACTTATCAGCTAGTTA
TCGGCTAGCTCAATCGCAAATCGGGCATCCCATGATATATTCAGCCAGCTTGTTAGCTCAGCTTG
TCTCCCTCGGGACTCGCCATTCTCACTTATATAGGATTCCATTTCGTCTCCACAAGTTAGCCTGT
CTGCCTGCAAGGCCCAATCGAAGCAGATTGTCCCCGACCTTAAGGGTTCCGGATAGCGCCCCTTC
ACTTGTAGTTTCGCTACTCTAGGACATCAACACCAACTCAGGCTCCAGCCCTAACTTCAGCTTTA
GATTCAACTTCAAATTAGGTACCAGCCTTGGCCTAGGCATTGGTTTCCTTCTTCGTAGTCTTCTT
CTTCACAGTTTCCCTCGGATTCGGCATAGCCTTCTTCAGATTATTCATCCTTGTCTTCGTCTCTG
TCTACCAGATCGGATCCAATCAAAGCTGTTCGTCCCCCTTCTCAA
Found at i:485281 original size:18 final size:18
Alignment explanation
Indices: 485260--485302 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
485250 CAACCTTGTT
485260 GACTATGACAACAG-TCGC
1 GACTATGA-AACAGATCGC
485278 GACTAT-AAACAGACTCGC
1 GACTATGAAACAGA-TCGC
485296 GACTATG
1 GACTATG
485303 GCAGGGCGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.35, C:0.26, G:0.21, T:0.19
Consensus pattern (18 bp):
GACTATGAAACAGATCGC
Left flanking sequence: Indices 484760 -- 485259
TACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGA
GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTAC
CTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATAACACTTCT
CCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGT
CCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTGTCCTAATCAAAAGATAGGA
GAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAG
CGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTCACCGGGAGGAT
CGCCCTCCCAATTCGAAGTTTTTTCCTGGAAGTTTCAACCTTGTT
Right flanking sequence: Indices 485303 -- 485802
GCAGGGCGGTACGCTCTGCTCTCTCGCGACCCCTACTCTAATCAAAAGACTAAAGGCCCCTACTG
AAGATTCTAGGTCGCCAAACTACGACGAGAGTTTCGCCTTTTGAAGCGCCAGTCGCGTAGGGCGA
CCGGGCCAGGCCGAGTCAGAAAGGCTTTGATGACTCAAGGTTCATATTAGGGAAAGGAGAGTGAG
GGGAAGAGGGGGCAGCCCTCGGCCCGATCATCCAATTCGCTCCAACAGACAGGCATGGTTCTGTA
GTCAAAGCAACTTCGTCACTTTCGTGTACCCATCGGACGGCAGCCCTTTCGGGGGTTCCTTAGGG
ACCGATTCACTCTGCGTAGATTGACTGAACGCAGAAAACCTTCCACTGGCAGGCGATCGTGTTTT
TCACAGGATTTATCGTTACTCATGTCAGCATTCTCACTTCTGATATCTCCAGGTGTTGTCACCAA
AAACCTTCCCCGATTGACAGAACGTTCCGCTACTGACACTTGAAA
Found at i:495934 original size:9 final size:9
Alignment explanation
Indices: 495920--495954 Score: 70
Period size: 9 Copynumber: 3.9 Consensus size: 9
495910 GTTGGATTCT
495920 CTTTAAGGC
1 CTTTAAGGC
495929 CTTTAAGGC
1 CTTTAAGGC
495938 CTTTAAGGC
1 CTTTAAGGC
495947 CTTTAAGG
1 CTTTAAGG
495955 ATGAGGGGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.34
Consensus pattern (9 bp):
CTTTAAGGC
Left flanking sequence: Indices 495420 -- 495919
TTCTATATGGGATAATCCCAGAGCCGAACAACCGCTTTCTTATCCGCGCTCTTCCCCTTCCTTCC
TGAGCCAAATACCTAAGCTAAGTATTGGTCGACTCCTTCATAGCATCCAAGTCCTACCCATACCT
ATTCCAGACCATATCTCCCTTTTAGCCTGACTTAAGTATTAGGGCAATCCCTCCATCCACTTCTG
TATCCTCGTCCTGGCCCGAATTGGGATAGGAGATCTCCCCTACCTAGCCGATCAAGATCCTCAAT
AGTAAAGAGAAAGAAGTCGATCGAAACAGGACTAACTATAGGTTCGATCGATCCGCTTCCTTCAG
TAGTTAGTTACAAATGTTTGATAGGAAAGGCTTAGCCATTGTTGTCCTCTTTCCCGCACGAAGAG
GGTTGGTCTTCCTGAGACTAAGGTGTCAAGGCGGTCGATCCTGACTTATCTACAAATAAAGAAAG
CCCTAGCTACAAGAAAATCTCCCGAAACCTCTTTAGTTGGATTCT
Right flanking sequence: Indices 495955 -- 496454
ATGAGGGGTTGAGGAGGGATTTGAATCAAAACTAGATTTTGGGGTCAAGGGAATGACTCCACTCC
TCTGCCGGGTCTCGTTCCGAACCGGGCTTCATTCAACTCAATCACTTGGCAGGGGGGTTATAGGG
GGATTTGGCCTACCAACTGCAGGCTCGGGTGGGGGAAAGGAGATGGAATCAACTCGACCAACTCA
TCTTTCTTTCGATGAGCACTCGACTGCTCTCGCTTCGCCCCTCTTTCTTTTCCTTAGAGAGTTTC
TCGCTTTCGTAGTCTAGCATAACATACGATTATACTATAGCATAGTATACTTGCGCTTTAGCATA
GCAGTATACCTTATCTTATCTTATCTTATATAGTTTTGATGCTTGATGCGTAATATTACAATTCT
TCTTTCCTTTTATCCACTATAGCAATAGATATACCAAAAAAGCAAAAAGTGACTATAGATAGGGC
GTATGAATGTTGGCCATTTTTCAGGCATAACGCACAAAGCACTCG
Found at i:516044 original size:16 final size:17
Alignment explanation
Indices: 516023--516059 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
516013 AGAGGAGTCA
516023 ACCAAAAAG-AAAGACC
1 ACCAAAAAGTAAAGACC
*
516039 ACC-AAAAGTAACGACC
1 ACCAAAAAGTAAAGACC
516055 ACCAA
1 ACCAA
516060 GATACGCATA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 5 0.28
16 12 0.67
17 1 0.06
ACGTcount: A:0.57, C:0.30, G:0.11, T:0.03
Consensus pattern (17 bp):
ACCAAAAAGTAAAGACC
Left flanking sequence: Indices 515523 -- 516022
CCATCCAAAATGAGCGAATTTCTCTTTTTCGTTAGTTAAGAGAGCCATTCCATTTAGGGGATGAA
TACTCTATCTCATCTCTAACTCATTTCTTATCTGACCTTGAAAAAAAAAGATAGCAAGTTCTATG
TACAAGTTTTCTCAGTGCTTTCTAATTCACAAGAATAGAAGCCTTTCTTTTCTTGAGTTGCATAT
TTCTGCAACAGGATAAAGGAAACCGATTGAGAAACTTGCATGGGGCTGGCTATTCACTCACCTTT
TTCTGCTAATGTGCAGCGGCGAGGAGCCAATTGGTTGTTGGTAAGGAGCATGAGCGGGCGGGGAG
CTCACACAAGTAAGTGAAGGACCCCCGTAGGGCCTTTCTGAAGTTTGGCCCACACACGGCCAGGG
GGAAAAGAAAAGGGAGGGGGGATAAGGCTCCCCTTAGCCCTTAGAATCGAATTCTAAACCGGCGT
GGCGCTGCTGGATGCTTCTGATCAATAGAACAGCAAGAGGAGTCA
Right flanking sequence: Indices 516060 -- 516559
GATACGCATAGTGATTCGATCTTTTGATCACCCATTTTTGGAAAACCATTTTTGGGGGCTTCCGC
CTTACACACGGAAGATTGGATTGCCTGAATCACGAGTCTTATATACTGTGTTACGATCACCTCAT
ATTGATAAAAAGTCCAGAGAACAATTTGAAATGGAAATCAAGAAACAATTTCTAGTCATAAAAAC
AGAAAGGCATGAATTGCGCAAAAAGTTCTTTCGGTTAAAACGCCGTGCGACTCGGAGGACATAAG
ACTTCTTGGTCAAGCCAAAAAGATTGCCGACTGGATGCTCCTACCCCACCATGCCTGGCCCTTTA
CCTTACCTTAAGAAGAAAGAGGGGAGTATGAAGCGTGGGAAAGAATGCAAGAAGTGTATGATACA
ACAGGTAACCTTCAGGAGTGGCGGCAAACCTCTTGATTGATCAACGCGAGTGAACTGTGCTTAGA
CGCTTCGTAAAACCGCACCGATGAGAGGAGCTGATGGATGAGTAG
Done.