Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_026515
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 501401
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Found at i:5596 original size:24 final size:24
Alignment explanation
Indices: 5569--5616 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
5559 CTCAGTCTAC
5569 ATCTATGTTATTTGGAAATGCTGG
1 ATCTATGTTATTTGGAAATGCTGG
5593 ATCTATGTTATTTGGAAATGCTGG
1 ATCTATGTTATTTGGAAATGCTGG
5617 TACAGGGACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.08, G:0.25, T:0.42
Consensus pattern (24 bp):
ATCTATGTTATTTGGAAATGCTGG
Left flanking sequence: Indices 5069 -- 5568
AAAAAGACAACCTTTAGGGGAAAACAACATAACTGACATTCGGGTATGGCATCGAATGAGAACAG
CAACAGGGATGGGAACTAGAGCTTGAAACAACTTAAGCGGGCTATCGAATAGCACTTAATACAGC
TCTGGAATATCACTCTCGCACCCTGAAGGAGGTGCGGAGATGAACCATGACTAATTGCCTATCCA
TTCTATTACAGACCATATCGCCCTTTGGGGGTCAATAATATGAAGACCACAGGTACTGCCTTAAC
TCACAATAGGAACCAGCGATGGCACTCACCCTGAGGGAGCCATGACTATCCGAAAGGAGCTTAGA
GCCGTATCGCTAAAGGGAATAGAATACACATAAAGACACCCTCTTTAATAGGGAATACCCTAACC
CTGGGATCCGGGGGAAAAGAAGAAAATTAAATTATTATGAAAACTAATGTCGTCTTACCTTCACC
CTGGGGAGGGGTGAATTCCCGGTCTACTTTTCATTCTCAGTCTAC
Right flanking sequence: Indices 5617 -- 6116
TACAGGGACTATACTACTTGGTACTACTATGTTATGCGATAGGTATTTCAATTTTTGGACATCTT
CGTTTCGACGTATATTTTTATTTGAGAGGGCCGGTCTAACTTTTTTTATTTTTTTTCTATGCGAT
TCCCGAGAACTCCTCCTTTTCTTTTCTTCTCTCCCAATTGTAAAGAATGTCCCAAAAAGAGTACA
AATCCTTTTCTTTCGTATAGCAAGGCTAATCTGTCTTCTTATTCTCTCAAAGGTCGCCTTTGCGC
TTGGGTTACTGTTTATGGACGAGCTTAGTAAGGCTCTCCTTCCGTTCTATCCTTCGGCGCCTGTT
GCATCAAGTGGGCCGCTTCCTTCTCCTCCGGACCCGGGGTCTTTCCATATTCCAGCAGTTTCGCA
AGATCCGGAAGAGAACCCCCCAGGGGGCTCACACCCACCTGTCCATCAACAGCAGGACGAGACCG
CCGGTCAAAAAAAAATCGAAGCAGTCCTGGAAAAACATCTGCGAC
Found at i:15904 original size:41 final size:38
Alignment explanation
Indices: 15805--15914 Score: 150
Period size: 41 Copynumber: 2.8 Consensus size: 38
15795 TAAAGAAGCA
* *
15805 AGGGGTGAGCGCACTAGCGCGAAAGCCGTTG-CGCAAG
1 AGGGGTGAGCGCACTAGCGCGAAAGCCGTTGCCACAAC
* *
15842 ACGGATGAGCGCACTAGCGCGAAAGCCGTTGCCTTTACAAC
1 AGGGGTGAGCGCACTAGCGCGAAAGCCGTTGCC---ACAAC
15883 AGGGGTGAGCGCACTAGCGCGAAAGCCGTTGC
1 AGGGGTGAGCGCACTAGCGCGAAAGCCGTTGC
15915 GCCTTAGTGG
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
37 29 0.46
38 1 0.02
41 33 0.52
ACGTcount: A:0.25, C:0.26, G:0.35, T:0.14
Consensus pattern (38 bp):
AGGGGTGAGCGCACTAGCGCGAAAGCCGTTGCCACAAC
Left flanking sequence: Indices 15305 -- 15804
CCCACACTTATCATGACAACATCACCGATCTTTGGCGCTTATGGGGGGCCCTATCATACACATGC
ACCACCAGAGTCTTCATAAGAACTCTGGGGCGAGGGCCAAGGTGAACCCGGATTAACGATGAGAA
GCGGTCAAATCAGTAGCAAAGGCACCAGGCTTGGTGGGTAAGGCGGTTGGTTGAACCGGGCGATA
GCTTCGCGATCGATAGCTCAGTGAGGTACGCCACCCGCCCTACTTCTAATGATAGATAGAAAAGG
TGGGAGAGGGGCTGAGGGACGGCAAAGGTACAAAAACAAAAACTACATGACATACGTACGTTAAA
TGGTAGGCCCATTACGAACAATCATTAAGGCGGTCTCCAATCTCGCTCGGCTCGGGGCGATCACT
TGAACAGGGCGGGATTGATCGATCTACATCAAAAATTCTGGCTTCCCTTCCCTCCAAGCAAGGGG
TGAGTGCTAACGCGCGAAAGCCGTTGCCTTTACTTTAAAGAAGCA
Right flanking sequence: Indices 15915 -- 16414
GCCTTAGTGGAGCGCATACGTTTTCTTGCTGCGCATACGTTTTCTTGCTGGACTGGACGCGCATC
TACAGAATAAAGAGAGCACGCACCACACTCCTACTATACCAGGGCCTTTAGCTTTCACTGAGAAG
AAGAGATTACTTCCAGCTAGCTTTTTTCCCTAACCCTAACCAATGAATGATAGGCCGGCTTAGGA
TAATTGAAAACGAATTCACTTTCAGTAATCGGAGGCAGGTCAGGGGCCGGCGGGCACGCCCCCAG
CTTCTTAAGTTTGGGAATTGTGCGGGACCAATGCTACGAGCTTCCGGAATCCAATGGAATCTTCG
TAAAGTCGATCATTACGAGTGTTACGATTCATTCGATTGGCAGGTCCAATCGATTCATAGCCTCT
CGAGCACAACCCATATTCATGCAAGGATTGGTGATTGAGGATCCATACAGAGTTTTATGAAATAT
CTTAGAGATCAAGGAACAGATGCTTTCTTCAGGAAATATGAATAC
Found at i:15950 original size:19 final size:19
Alignment explanation
Indices: 15926--15964 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
15916 CCTTAGTGGA
15926 GCGCATACGTTTTCTTGCT
1 GCGCATACGTTTTCTTGCT
15945 GCGCATACGTTTTCTTGCT
1 GCGCATACGTTTTCTTGCT
15964 G
1 G
15965 GACTGGACGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.10, C:0.26, G:0.23, T:0.41
Consensus pattern (19 bp):
GCGCATACGTTTTCTTGCT
Left flanking sequence: Indices 15426 -- 15925
CGATGAGAAGCGGTCAAATCAGTAGCAAAGGCACCAGGCTTGGTGGGTAAGGCGGTTGGTTGAAC
CGGGCGATAGCTTCGCGATCGATAGCTCAGTGAGGTACGCCACCCGCCCTACTTCTAATGATAGA
TAGAAAAGGTGGGAGAGGGGCTGAGGGACGGCAAAGGTACAAAAACAAAAACTACATGACATACG
TACGTTAAATGGTAGGCCCATTACGAACAATCATTAAGGCGGTCTCCAATCTCGCTCGGCTCGGG
GCGATCACTTGAACAGGGCGGGATTGATCGATCTACATCAAAAATTCTGGCTTCCCTTCCCTCCA
AGCAAGGGGTGAGTGCTAACGCGCGAAAGCCGTTGCCTTTACTTTAAAGAAGCAAGGGGTGAGCG
CACTAGCGCGAAAGCCGTTGCGCAAGACGGATGAGCGCACTAGCGCGAAAGCCGTTGCCTTTACA
ACAGGGGTGAGCGCACTAGCGCGAAAGCCGTTGCGCCTTAGTGGA
Right flanking sequence: Indices 15965 -- 16464
GACTGGACGCGCATCTACAGAATAAAGAGAGCACGCACCACACTCCTACTATACCAGGGCCTTTA
GCTTTCACTGAGAAGAAGAGATTACTTCCAGCTAGCTTTTTTCCCTAACCCTAACCAATGAATGA
TAGGCCGGCTTAGGATAATTGAAAACGAATTCACTTTCAGTAATCGGAGGCAGGTCAGGGGCCGG
CGGGCACGCCCCCAGCTTCTTAAGTTTGGGAATTGTGCGGGACCAATGCTACGAGCTTCCGGAAT
CCAATGGAATCTTCGTAAAGTCGATCATTACGAGTGTTACGATTCATTCGATTGGCAGGTCCAAT
CGATTCATAGCCTCTCGAGCACAACCCATATTCATGCAAGGATTGGTGATTGAGGATCCATACAG
AGTTTTATGAAATATCTTAGAGATCAAGGAACAGATGCTTTCTTCAGGAAATATGAATACTTTAT
GGTAGGGACAAGCCATTTTTTGGCGTTGAATCGGGTCAGGAAGAA
Found at i:19075 original size:19 final size:19
Alignment explanation
Indices: 19053--19091 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
19043 TTGCGCTAAC
*
19053 GCGCAGCCGTTTTCTTGCT
1 GCGCAGACGTTTTCTTGCT
*
19072 GCGCATACGTTTTCTTGCT
1 GCGCAGACGTTTTCTTGCT
19091 G
1 G
19092 GAGCGGAGCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.08, C:0.28, G:0.26, T:0.38
Consensus pattern (19 bp):
GCGCAGACGTTTTCTTGCT
Left flanking sequence: Indices 18553 -- 19052
ACTTATTTGAAAACCGGCTCCTTCCTCTACTCCTATTTCGGCTCTTATACATGCTGCTGTCACCT
TTCAAACCAAGCTCTTGGTGCCTGCTTTAGCTTGCCGGAGGCCGTAACATAAATCGCTTTCTTGA
GCTTGCATACCAAGTTAGGATTCCTAGGAGAAGAGAAGCCTGGAGTTGGAGGAGGCTGAATAGAA
ACTAATTCTTGCCCCCTTCCCTTATGTTGTTGAAAGGCATTCTATTCTTCACGTCAAATTGAAAT
AAGGCCACCTTTTGATTGCAGCCAAGGCAAGAATGCCACGAATGGTGTTTAGCAACCTGAAGCAA
ATGTTTTCCCTATCTCTAAAGGAGCGGAAAGCCGCTCGCCTTTACTAACCAAGCAAGGGGTAAGC
GCTAACTAAGAAAGCCATTGCGCACCAAGCAACGATTGAGTGCGCTAGCGCGAAAGCCTAAAGCA
AGAAGCAAGGGGTGAGCGCACTAGCGCGAAAGCCGTTGCGCTAAC
Right flanking sequence: Indices 19092 -- 19591
GAGCGGAGCCACTTCCTTGACTATAAGCTTCGGTTCGAAGAGAAAAGGAACATATCCAATGAGTC
TGATTGCAATGGTATAAGATATAAGCAACAAGGAATAGATACGCGCAAGGTAAACGACAGAACCA
TGTACTAACCGGACCGAAGGAAGAGGTCTCCTGTACAATCTCTGGCCCAAGAATCTGTCTCTCTC
CTACTTCATCCCAGCATAGGGGAGTCCTGCACTTGCGTCCATAGAGTGCCTCAAAAGGTGGCATG
CCTATACTCGCCTGATAACTCTTGTTATAGGCGAACTCCACCAAGGGTAGATGTCTGTCCCAACA
ACCTCGAAAATAAAGGGATTACCTCCGCATAGCCTCCAATGTCTGGATGGTCCTCTTAGACTGGC
CATCGGAGGATGGAAGGCTGTGCTAAGACTCACTCTGCTACCCAAAGCCGACTTTCTTTATCAAG
CGGCTCTGCCACAAGGCTGAAGTGAACCGTGGATCTCTGTCTGAT
Found at i:22138 original size:16 final size:17
Alignment explanation
Indices: 22119--22155 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
22109 CACGAAGAGG
22119 ACCAAAAAG-AAAGACC
1 ACCAAAAAGTAAAGACC
*
22135 ACC-AAAAGTAACGACC
1 ACCAAAAAGTAAAGACC
22151 ACCAA
1 ACCAA
22156 GATAGGCATA
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 5 0.28
16 12 0.67
17 1 0.06
ACGTcount: A:0.57, C:0.30, G:0.11, T:0.03
Consensus pattern (17 bp):
ACCAAAAAGTAAAGACC
Left flanking sequence: Indices 21619 -- 22118
AACAACCTCTCCTTACTGATATCCAAAGGAGGGCAGAGCTTCAAGAGAGGTTGGCGTTCTATTTC
ATTGGAAGGAACGAGCGCAGGCACCTCCCACTCTTTTTGGGGATCCTGGAAAAGCAGGTCCTCTT
GGAAAAGAGGGTCGAGGCGGCATTGGTGCGGGATGGGTTTCCCGCCCATATAGTTCTGGGTTGGA
GGTCACAAATCCGCGGCCTCCTCTTTAACCACCCTACTAGGGGAGGGGCGCTTTCTGAAAATACC
TTAAATAGGTATTTGGGCCAGGTCGAGAGAGAGGGCACTCGTCAGAGCCAGCCCTATCTTAGACT
GGTTGCCGCTATAGGCAACTGGGACCTTTTCTAAGAGAACCCACTTAGAAAACCTTTCTTCAGCG
TGGCCCACACACGGCCAGGTGGGAAGGGCGGGGGGCCGGCCGCCCTTAGAATCGAATTCTAAACC
GGCGTGGTGCTGCTGGATGCTTCTGATCAATAGAACACGAAGAGG
Right flanking sequence: Indices 22156 -- 22655
GATAGGCATAGTAATTCGATCTTTTGATCACCCATTTTTTGAAAACCCTTTTTGGGGGCTTCCGC
CTTACACACGGAAGATTGGATTGCCTGAATCACGAGTCTTATATACTGTGTTACGATCACCTCAT
ATTGATAAAAAGTCCAGAGAACAATTTTTTATGAAAATCAAGAAAGAATTTCTGGTCATAAAAAC
AGAAAGGCATGAATTGCGCAAGAAGTTCTTTCGGTTAAAACGCCGTGCGACTCGGAGGACATAAG
ACTTCTTGGTCAAGCCAAAAAGATTGCCGACTGGATGCTCCTACCCCACCATGCCTGGCCCTTTA
TCTTACCTTAAGAAGAAAGAGGAGGTATGAAGCGTGGGACAGAATGCAAGAAGTGTATGATACAA
CAGATAACCTTAAGGAGTGGCGGCAACCCTCTTGATTGATCAACGCGAGTGAACTGTGCTTAGAC
GCTTCGTAAAACCGCACCGATCTACGAGAGGAGCTGATAGATGAG
Found at i:26773 original size:19 final size:19
Alignment explanation
Indices: 26749--26826 Score: 99
Period size: 19 Copynumber: 4.2 Consensus size: 19
26739 GCAAGAGTAT
26749 GCGCAGCAAGAAAAC-TAAA
1 GCGCAGCAAGAAAACGT-AA
26768 GCGCAGCAAGAAAACGT-A
1 GCGCAGCAAGAAAACGTAA
* *
26786 -TGCAGCAAGAAAACGTAT
1 GCGCAGCAAGAAAACGTAA
*
26804 GCGCAGCAAGAAAACGTAT
1 GCGCAGCAAGAAAACGTAA
26823 GCGC
1 GCGC
26827 GTTAGCGCAA
Statistics
Matches: 53, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
17 15 0.28
18 1 0.02
19 36 0.68
20 1 0.02
ACGTcount: A:0.44, C:0.22, G:0.26, T:0.09
Consensus pattern (19 bp):
GCGCAGCAAGAAAACGTAA
Left flanking sequence: Indices 26249 -- 26748
GTGAAGTTCTTCCCGGGCGGGGAGAACGAACGATGTTGATTGGCATAAGGCCCCTAGTCTAATTC
TGAAGCATTGCCTCTTCTAACAAAGTCAAAAGGGAGTGATGTGATTCCCAGGTGGGGATCACGAA
CGATATATAGCACAAGAACTTGCCTTAAGTAATTTCTTAAGCTTAAGTAAGTCTCTTAGCTCTTA
GCACCGACCTCGTATGTTCTCAGTCTTCAATTTCCCCTTTCTTCTTTTTCACTCGAACTGTGGTA
CACGACCTCCTTTTACTGGAAAGACCTCTATTGGACTGGGAAGTAGCGCGGGAAAGTATGAAATG
CTCATTTGCTAGTGTTGTAGATCCTTTGTAAAGTCTATTCCTTCCTTGGCAGTACGGAAAGTCTG
TATCTATAAGGAAGTCTCGGGGCTCCCAAGTACACGATTGTTTAGGTGTGTGCTGAAAGCGCTTC
CTTTAATGCCAGCCTCTATCTTTCACCCCTCTCCAGCAAGAGTAT
Right flanking sequence: Indices 26827 -- 27326
GTTAGCGCAACGGCTTTCGCGCTAGTGCGCTCATCCGCTGCTTCTTGCTTTAGGCTTTCGCGCTA
GTGCGCTCACCCCTTGCTTAAAGTAAAGGCAACGGCTTTCTTAGTTAGCACTCACCCCTTGCTTG
GTTAGTCAAGCGAGCACCAAACACCCCTCTCCTCGGCAACAAGAGTCGGTTATGGAATAGCCTTT
TAGTCGGCTTTCTCGTTCTTAAGGACTTTCTGGCCGGTAGGCTTTATAGCGGACCTGCCTTGCTG
ACAGCTAGGATATTACATATATAGTTGCGCTTGCCTTCACTTAGAAACTCTACGCCCCCTATTAG
AGTAAGGCATGCTCTCGAAACTAGATTCACTCGTTCTTGTCTCCAGCGATTAACCTATTCCAGAG
CAGTCTGGTGATTAGCCGCACCCGCACTACTCGAAGCCTTCGTAAACTCATTGTCGGTTTCTATC
GTAGTGGAGGTTGCTGTGAGGAGATCCTTGTGCCAGTGAAGATTG
Found at i:26792 original size:17 final size:17
Alignment explanation
Indices: 26770--26824 Score: 92
Period size: 17 Copynumber: 3.1 Consensus size: 17
26760 AAACTAAAGC
26770 GCAGCAAGAAAACGTAT
1 GCAGCAAGAAAACGTAT
26787 GCAGCAAGAAAACGTAT
1 GCAGCAAGAAAACGTAT
26804 GCGCAGCAAGAAAACGTAT
1 --GCAGCAAGAAAACGTAT
26823 GC
1 GC
26825 GCGTTAGCGC
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
17 19 0.53
19 17 0.47
ACGTcount: A:0.44, C:0.20, G:0.25, T:0.11
Consensus pattern (17 bp):
GCAGCAAGAAAACGTAT
Left flanking sequence: Indices 26270 -- 26769
GAGAACGAACGATGTTGATTGGCATAAGGCCCCTAGTCTAATTCTGAAGCATTGCCTCTTCTAAC
AAAGTCAAAAGGGAGTGATGTGATTCCCAGGTGGGGATCACGAACGATATATAGCACAAGAACTT
GCCTTAAGTAATTTCTTAAGCTTAAGTAAGTCTCTTAGCTCTTAGCACCGACCTCGTATGTTCTC
AGTCTTCAATTTCCCCTTTCTTCTTTTTCACTCGAACTGTGGTACACGACCTCCTTTTACTGGAA
AGACCTCTATTGGACTGGGAAGTAGCGCGGGAAAGTATGAAATGCTCATTTGCTAGTGTTGTAGA
TCCTTTGTAAAGTCTATTCCTTCCTTGGCAGTACGGAAAGTCTGTATCTATAAGGAAGTCTCGGG
GCTCCCAAGTACACGATTGTTTAGGTGTGTGCTGAAAGCGCTTCCTTTAATGCCAGCCTCTATCT
TTCACCCCTCTCCAGCAAGAGTATGCGCAGCAAGAAAACTAAAGC
Right flanking sequence: Indices 26825 -- 27324
GCGTTAGCGCAACGGCTTTCGCGCTAGTGCGCTCATCCGCTGCTTCTTGCTTTAGGCTTTCGCGC
TAGTGCGCTCACCCCTTGCTTAAAGTAAAGGCAACGGCTTTCTTAGTTAGCACTCACCCCTTGCT
TGGTTAGTCAAGCGAGCACCAAACACCCCTCTCCTCGGCAACAAGAGTCGGTTATGGAATAGCCT
TTTAGTCGGCTTTCTCGTTCTTAAGGACTTTCTGGCCGGTAGGCTTTATAGCGGACCTGCCTTGC
TGACAGCTAGGATATTACATATATAGTTGCGCTTGCCTTCACTTAGAAACTCTACGCCCCCTATT
AGAGTAAGGCATGCTCTCGAAACTAGATTCACTCGTTCTTGTCTCCAGCGATTAACCTATTCCAG
AGCAGTCTGGTGATTAGCCGCACCCGCACTACTCGAAGCCTTCGTAAACTCATTGTCGGTTTCTA
TCGTAGTGGAGGTTGCTGTGAGGAGATCCTTGTGCCAGTGAAGAT
Found at i:26794 original size:36 final size:36
Alignment explanation
Indices: 26751--26824 Score: 123
Period size: 36 Copynumber: 2.1 Consensus size: 36
26741 AAGAGTATGC
26751 GCAGCAAGAAAAC-TAAAGCGCAGCAAGAAAACGTAT
1 GCAGCAAGAAAACGT-AAGCGCAGCAAGAAAACGTAT
*
26787 GCAGCAAGAAAACGTATGCGCAGCAAGAAAACGTAT
1 GCAGCAAGAAAACGTAAGCGCAGCAAGAAAACGTAT
26823 GC
1 GC
26825 GCGTTAGCGC
Statistics
Matches: 36, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
36 35 0.97
37 1 0.03
ACGTcount: A:0.46, C:0.20, G:0.24, T:0.09
Consensus pattern (36 bp):
GCAGCAAGAAAACGTAAGCGCAGCAAGAAAACGTAT
Left flanking sequence: Indices 26251 -- 26750
GAAGTTCTTCCCGGGCGGGGAGAACGAACGATGTTGATTGGCATAAGGCCCCTAGTCTAATTCTG
AAGCATTGCCTCTTCTAACAAAGTCAAAAGGGAGTGATGTGATTCCCAGGTGGGGATCACGAACG
ATATATAGCACAAGAACTTGCCTTAAGTAATTTCTTAAGCTTAAGTAAGTCTCTTAGCTCTTAGC
ACCGACCTCGTATGTTCTCAGTCTTCAATTTCCCCTTTCTTCTTTTTCACTCGAACTGTGGTACA
CGACCTCCTTTTACTGGAAAGACCTCTATTGGACTGGGAAGTAGCGCGGGAAAGTATGAAATGCT
CATTTGCTAGTGTTGTAGATCCTTTGTAAAGTCTATTCCTTCCTTGGCAGTACGGAAAGTCTGTA
TCTATAAGGAAGTCTCGGGGCTCCCAAGTACACGATTGTTTAGGTGTGTGCTGAAAGCGCTTCCT
TTAATGCCAGCCTCTATCTTTCACCCCTCTCCAGCAAGAGTATGC
Right flanking sequence: Indices 26825 -- 27324
GCGTTAGCGCAACGGCTTTCGCGCTAGTGCGCTCATCCGCTGCTTCTTGCTTTAGGCTTTCGCGC
TAGTGCGCTCACCCCTTGCTTAAAGTAAAGGCAACGGCTTTCTTAGTTAGCACTCACCCCTTGCT
TGGTTAGTCAAGCGAGCACCAAACACCCCTCTCCTCGGCAACAAGAGTCGGTTATGGAATAGCCT
TTTAGTCGGCTTTCTCGTTCTTAAGGACTTTCTGGCCGGTAGGCTTTATAGCGGACCTGCCTTGC
TGACAGCTAGGATATTACATATATAGTTGCGCTTGCCTTCACTTAGAAACTCTACGCCCCCTATT
AGAGTAAGGCATGCTCTCGAAACTAGATTCACTCGTTCTTGTCTCCAGCGATTAACCTATTCCAG
AGCAGTCTGGTGATTAGCCGCACCCGCACTACTCGAAGCCTTCGTAAACTCATTGTCGGTTTCTA
TCGTAGTGGAGGTTGCTGTGAGGAGATCCTTGTGCCAGTGAAGAT
Found at i:42834 original size:19 final size:19
Alignment explanation
Indices: 42810--42870 Score: 88
Period size: 19 Copynumber: 3.2 Consensus size: 19
42800 GCAAGAGTAT
42810 GCGCAGCAAGAAAAC-TAAA
1 GCGCAGCAAGAAAACGT-AA
*
42829 GCGCAGCAAGAAAACGTAT
1 GCGCAGCAAGAAAACGTAA
*
42848 GCGCAGCAAGAAAACGTAT
1 GCGCAGCAAGAAAACGTAA
42867 GCGC
1 GCGC
42871 GTTAGCGCAA
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
19 39 0.98
20 1 0.03
ACGTcount: A:0.43, C:0.23, G:0.26, T:0.08
Consensus pattern (19 bp):
GCGCAGCAAGAAAACGTAA
Left flanking sequence: Indices 42310 -- 42809
CCTTGATCTGAATCTCTGGAACTCACAGAAGACCAAGGCAAGTCCACTCTCAATTCAGCATAAGC
TTGGGATCTTTCTTTCCTAAAGCATTTCCCTTGAAGCCAGGTCTTTCTTCTTTAAAGCCTGGAGC
TGGACTTCTTTTTCCTGACTCGATTCACAGTTTAATCACACTAAGCCAGAGCCCAACCAGGGTGA
GAGAGATAGGAGAGTAGGGACGGGGAACCAATGTCACCAACAACACTAGCAGTCTCGGATCTTTG
AATAGACAGAGAGAGATGCTCTTCCTGCGGCCCAAGAGCGTATTCGTTCAAAGAGCTGGCAATGA
CTTTCTTCCCACCCGGAAATCGTAGTAAGCCGGGAGAAAGACATTCATATATTCCCCAGGCACGG
GATAAAGGGAAAGAGAGAGCCGAGAGCCGGGAACGCAATAAAAAGAATTTCCTGATCCTTATAGT
TTATAGTAAAGTCGAGTGGTCAACACTCCTCTCCAGCAAGAGTAT
Right flanking sequence: Indices 42871 -- 43370
GTTAGCGCAACGGCTTTCGCGCTAGTGCGCTCATCCGCTGCTTCTTGCTTTAGGCTTTCGCGCTA
GCGCACTCACCCCTTGCTTGGTTAATCAAGCGAGTGGCTTTCAGCTCCTTTCCTTAGCAGTCAAG
TGGCTCCGCTCCTCCATTGCGCTCGGCCCTAAGGTGGCATCTTAGCAATAGAAAACTTGAGTTTG
ACGTGCCCCATGTGTGAGTGATATAGGTTAAAATGGTGCCTTTTTAGGCCTTTCTTTTGTGTAAC
AGTATCTGTCCTCCTAATGTCCTTAGTTTTGTTGTAGAGCTTATTAAGGAAGAGTTGAGCTTTAC
CGATTGTTCCAGAGTTGGGGAAATCTCCTCCACTTTCTCGCATTTTCTATTACTTCGGTTGGGCT
CTAGGGCCCGATCCCGGGAAAGAGGGCATATTTGCTTGGCCCGGGCAAGGATCTTTCAGAGGGGA
AATCCCATTTCAATCCGCCATTTCAGAGGTGAAAGCCGAAAGAAT
Found at i:47992 original size:19 final size:19
Alignment explanation
Indices: 47920--47984 Score: 66
Period size: 19 Copynumber: 3.6 Consensus size: 19
47910 CCTCTCTTTC
47920 CAGCAAGAAAACTAAAGCG
1 CAGCAAGAAAACTAAAGCG
* * * *
47939 CAGAAAG-AAAGT---CCT
1 CAGCAAGAAAACTAAAGCG
47954 CAGCAAGAAAACTAAAGCG
1 CAGCAAGAAAACTAAAGCG
47973 CAGCAAGAAAAC
1 CAGCAAGAAAAC
47985 GTATGCGCTC
Statistics
Matches: 34, Mismatches: 8, Indels: 8
0.68 0.16 0.16
Matches are distributed among these distances:
15 7 0.21
16 4 0.12
18 4 0.12
19 19 0.56
ACGTcount: A:0.52, C:0.22, G:0.20, T:0.06
Consensus pattern (19 bp):
CAGCAAGAAAACTAAAGCG
Left flanking sequence: Indices 47420 -- 47919
TAGTTGAAGTATAGGTCGTCGATTCAATCTATCTTGATGGGATTTTTCTAGTAGGTAGCGAGAAG
ACTAGTAGTATCGACAAGAGGCTACATCAATAGCTGCAAATTTCGGGTAGGGTAGGCTTGGAGTC
AGAAGTCCTATTCTTCCCAACCAAATAAGCACTTTTGCAAAGTTCACCTTCCCGCGGTCAAAACA
AGACTTACGGATAACAATCAGACCTTACCAGGGACAGGGACCAGACTATAGAGCCTAATTAAAAA
GAATTCGGGCTTGCTTTTTCAATTCACATCTATGAGCGAGGATTCCTCTATCTCTTGCTCGCTTC
GATCGGAGACAGCTTAGGGAAGAATGATGGGTCGCTAACAAGGCCCCTAAATGACCGCTCAGAAG
GCCTACCTATTTTTTTTCCCAATCTGTCACTTGCTCGTCCCTCTCTCATGAAAATGGTCTCTCCT
CTCCTTATAGTCAATAAAGTCGAGTGGCTTCCACGCCTCTCTTTC
Right flanking sequence: Indices 47985 -- 48484
GTATGCGCTCCACTAAGGCGCAAGGGCTTTCGCGCTAGTGCGCTCACCCCTTGCTTCTTTAAAGT
AAAGGCAACGGCTTTCGCGCTAGTGCGCTCATCCCTTGCTTGTTGGGAAAGAAAGGGCGAGCGAA
GAGCTTTCGTTGTAGCTGATCTAGAAACATTAATAACCGGCGAGGAGAACACGCATAAGCCGTAT
GCAGCGGGTCTCATGCTTGTTCTCCCTAAGGAGCCTGTCAAGTACAATAGGGTGGAAACCTATTT
CAGTGAGGACTACATAACAATAAACTCCTTTGATGAAAGGAGTAGTAAAGTGCTTGAGGACTTTT
TGTCCAGAATTGAGCATATAGCTAAAGGTTTTAGGCCCGCCCTAACAATTTACTTCCATAACTTA
GGAAGATTTGATGGGGTTTTCTTGCTAAAGCACCTGACGTCTAATTGGAAGGGTGAGGTAAGACC
TATAATGCGGAACAACCGCATCTACCAAATCAGTGTCAAATCAGG
Found at i:52148 original size:21 final size:21
Alignment explanation
Indices: 52104--52150 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
52094 TTTTGGTTAC
* *
52104 TGCTGCTGCTTCATCTGATGT
1 TGCTGCTGCTGCACCTGATGT
* *
52125 TGCTGCTGCTGCACCTGTTTT
1 TGCTGCTGCTGCACCTGATGT
52146 TGCTG
1 TGCTG
52151 ATTCTGAGGC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.06, C:0.26, G:0.26, T:0.43
Consensus pattern (21 bp):
TGCTGCTGCTGCACCTGATGT
Left flanking sequence: Indices 51604 -- 52103
CGAACCAATAAAGAGTGGGGAAGGGACGGACCAAGCAACGATTGAGTGCGCTAGCGCGAAAGCCG
TTGCCTTTTAAACAGGGGTGAGCGCACTAGCGCGAAAGCCGTTGCGCAAGACGGATGAGCGCACT
AGCGCGAAAGCCGTTGCGCTAACGCGCATACGTTTTCTTGCTGCGCATACTCTTGCTGGAGTGAA
AGGAGACAGGGCAATGGTGATGTTGTAGCGATTGGTGAAGATGCAGGAGCAATAGTAGCTGTTGG
TGTTGCTACTGCTGCTGTCCCTTCTGCAGCTGATGCCACTGTTTGTGCTGCTGCAGCTGGTGCTT
CTGCTGCTGTTAAGACTGCTGCTGCTGGTGTTATTACCACAGCTGCTGTTATTGATACTGCAACT
GTTGCTGGGGCTGAGAATGCTGCTTGTAATGCTACTGCTATGGCTGGTGTTGTTAATGCTGTGGC
TGCTGATGCTGTTACTACAGCTGATGTTGCTGCAATTTTGGTTAC
Right flanking sequence: Indices 52151 -- 52650
ATTCTGAGGCAGCAAATAATGTTGTTGTGGCTGAAGTTACTGCTGCTGCTGCAAATTATGCTACT
GCTACTGTTAATGCAGCTACTGCTGTAACTGAAATTGTCTCAAAGGGTAATTCAGGTGGTGACAC
TACTGCTGCTGTGTTTTCAACTACTGCTGTTTCAACTGCAGTGTTTGTTACTGCTGGTGGTACTG
ATGCTGAGGTTAATACTGCTGTTATCACACCTGCGAGTGCTGTTCCTGCAACTGCTACTGGAATT
GCACCTGTTGCTGCTTCAATTCAGAATATTGCAACTGAAGTTGCTGCTGCTACTGATCTAAATGT
TGCTATTGCAACTGCTGATGGTGATGCTGCTGTGAAATTGGGAGGAAGAGTAACATCTGCTGCTG
ATGTTGCTACAAAGGCTGCTGCAGTTACTGCTGCTTCTGCTACTGAAGCTGCTGATGTTGCTGTT
GTTACTACTGCTGCTGATTTAGTTGTCGATGCTGCTGTTTCGATT
Found at i:52640 original size:21 final size:21
Alignment explanation
Indices: 52614--52682 Score: 88
Period size: 21 Copynumber: 3.3 Consensus size: 21
52604 TTGTTACTAC
52614 TGCTGCTGATTTAG-TT-GTCGA
1 TGCTGCTG-TTTAGATTGGT-GA
*
52635 TGCTGCTGTTTCGATTGGTGA
1 TGCTGCTGTTTAGATTGGTGA
*
52656 TGCTGCTGTTTCGATTGGTGA
1 TGCTGCTGTTTAGATTGGTGA
52677 TGCTGC
1 TGCTGC
52683 AGAAAAAACA
Statistics
Matches: 45, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
20 4 0.09
21 39 0.87
22 2 0.04
ACGTcount: A:0.10, C:0.16, G:0.32, T:0.42
Consensus pattern (21 bp):
TGCTGCTGTTTAGATTGGTGA
Left flanking sequence: Indices 52114 -- 52613
TCATCTGATGTTGCTGCTGCTGCACCTGTTTTTGCTGATTCTGAGGCAGCAAATAATGTTGTTGT
GGCTGAAGTTACTGCTGCTGCTGCAAATTATGCTACTGCTACTGTTAATGCAGCTACTGCTGTAA
CTGAAATTGTCTCAAAGGGTAATTCAGGTGGTGACACTACTGCTGCTGTGTTTTCAACTACTGCT
GTTTCAACTGCAGTGTTTGTTACTGCTGGTGGTACTGATGCTGAGGTTAATACTGCTGTTATCAC
ACCTGCGAGTGCTGTTCCTGCAACTGCTACTGGAATTGCACCTGTTGCTGCTTCAATTCAGAATA
TTGCAACTGAAGTTGCTGCTGCTACTGATCTAAATGTTGCTATTGCAACTGCTGATGGTGATGCT
GCTGTGAAATTGGGAGGAAGAGTAACATCTGCTGCTGATGTTGCTACAAAGGCTGCTGCAGTTAC
TGCTGCTTCTGCTACTGAAGCTGCTGATGTTGCTGTTGTTACTAC
Right flanking sequence: Indices 52683 -- 53182
AGAAAAAACAACTGATGTTAATGTTGCTGCTGTTACAACTGATGCAGCAACTGTTGCTGCTGATA
TTGCAGCTGAAATTCCTGCAGATGCTGTTGGTACTGCTGCTGACCCGGTAGACCCACAACCCGAA
TTACCAAGACCCGACCCGAGCCTTCCCCCTAACCCGACAGCTGAATCGGGTTCACACCCGACACC
CAAATCCAACCAAAATCCGAACACTCTAAATCCTACGGCTAAGGAATACACTCCTATTCGGAAAT
CGCAGCCAGTTGAAGGTTTGGTTACTTGGAATCGAGCCTGTGTCAACCTTCCGTCTTCTAGTAGA
GTAAGAAGGAGGTGGGGTGATGATTTTGATGAAGCTGTGGCTGAGATGGATGAAATCTATAACTC
TATGGCCGGCATATTCGAAGAGGTGTCAGATGCTGAAGCAGATGAGCGATTAGAGGCACGCCGAC
GATATGCACCAGAGGTTGCTGAGCCTGTTGAGGAGGATACAGTCC
Found at i:59510 original size:41 final size:41
Alignment explanation
Indices: 59460--59578 Score: 141
Period size: 45 Copynumber: 2.8 Consensus size: 41
59450 CCACTAAGGC
59460 GCAACGGCTTTCGCGCTAGTGCGCTCACCCCTGTT-GTAAAG
1 GCAACGGCTTTCGCGCTAGTGCGCTCACCCCT-TTAGTAAAG
** **
59501 GCAACGGCTTTCGCGCTAGTGCGCCCTTGCTTCTTTAAAGTAAAG
1 GCAACGGCTTTCGCGCTAGTGCG--CTCACCCCTTT--AGTAAAG
*
59546 GCAACGGCTTTCGCGCTAGTGCGCTCATCCCTT
1 GCAACGGCTTTCGCGCTAGTGCGCTCACCCCTT
59579 GCTTCTTGCT
Statistics
Matches: 64, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
41 23 0.36
42 2 0.03
43 10 0.16
45 29 0.45
ACGTcount: A:0.17, C:0.31, G:0.25, T:0.27
Consensus pattern (41 bp):
GCAACGGCTTTCGCGCTAGTGCGCTCACCCCTTTAGTAAAG
Left flanking sequence: Indices 58960 -- 59459
TTACTTTTAGGTAGTGGCCTAAGCGCTAAGAAGTGAACATCATGCTACTCAGACTATATGCTTAA
CACATGCAAGTCGAACCTTGGTTTTCGGAGTTCGAAATCGAAGGGGAAGAAGCGGGGTAGAGGAA
TTGGTCAACTCATCAGGCTCATGACCTGAAGATTGCAGGTTCGAATCCTGTCCCCGCCTAATCAG
TGGAACATTGTTCACCGGGATAGAAGGCCGGTCCCAACCCGTCTACAAAATGGGGCTAGTGTTCA
GTCTTGGTTGGTTCCACCTCTTTGCAGGGTGATGACACCAGTAGCTGTGGAGCACAGATGACCAT
TTCTGTCACTATTAAATTCCAACTTTTCGCTCCTTTCCTTTTATAATAAAGTCAAGTGGCTGGAG
CGCCTTTCCTTACAGGAAAGCTGCTTAAAAGCGCCTCTCTTTCCATATAGTCAAGAGAGTTGCTC
CGCTCCTCTCTTTCCAGCAAGAAAACGTATGCGCTCCACTAAGGC
Right flanking sequence: Indices 59579 -- 60078
GCTTCTTGCTTTAGGCTTTCGCGCTAGTAGAGTAGGGCGCTCACCCCTCTTGCTTTAGGCTTTCT
TAGTTAGCACTCACCCCTTGCTTGCTCCTTGCTGCTTACTTGCTATATCCCCGCGTCCTTGCACG
GCTCGGCTCGTTCTTCGAGCCCTGCTTCTCCCTTCCCCCTCTCCCCGTTCCTACCGTCCAAAACA
GGCCTATGGAGTATAGCCAAGTGGTAAGGCATCGGTTTTTGGTACCGGCATGCAAAGGTTCGAAT
CCTTTTACTCCAGATTATGAACACCCGATCGGATCTGTCAAGAACGAGCTGACGACTACAAGGGA
AGCAGCTGACTGCAGTCCCTGAGCCCGCAAGCCAAAAGTTTGGCTTGAACCTACCTTTGCTAAGA
GAAGAGAGAGAAGGGAAAGACAGATGGCAGAAAGAAATCCTTCCAACCGCGGAATTGAACACAAG
CCCAAGATAGACCCTTCTTCGGCCAGGTTCTTTTATCAATCTCCT
Found at i:62690 original size:13 final size:13
Alignment explanation
Indices: 62672--62696 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
62662 AATCTCTTCC
62672 TTTATTGTCGAGG
1 TTTATTGTCGAGG
62685 TTTATTGTCGAG
1 TTTATTGTCGAG
62697 ATCTTTGTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.08, G:0.28, T:0.48
Consensus pattern (13 bp):
TTTATTGTCGAGG
Left flanking sequence: Indices 62172 -- 62671
TCCATCATTTCTTCTTATCAAGAATGCCTGCCTACGTATTGTTGACTCTAGGTGTTCAATCAAGG
CGGATGCGCGAACACGCGCACGCTGGTCGAGCGGACTAAATAAGACACTTAGTACATGAACGGCT
ATAAACTCAAGCGTATATTGACCAAAGGCATTTAACAATTCTGAATCTTCACCCACTACTCTCTT
TTTGATGAATTCGCGCGCACTACAATCTTTCACATCAATTAAAGTTTCTATTACGTAATAGGCTT
CTCGCCAGAGATTTGTTTCGCTGAAGGCCATACTTTTTTTTTTGAATTTCCAATTGGAGCGCCGA
CAACTCTTCTTCTGGGAGGTCTGGAAAAAGGGGATTGTCCTTTTTAGAAGCCAACAAAGTGAAGA
CGGCTTCTTGCATTTTTTGCTTTTCACTATCATTCTGTTTTTCATCTTCTTTACCATACTTTTCA
TAGAAGTAGTTGTGCATAATCTTCCAAAATTGAATAATCTCTTCC
Right flanking sequence: Indices 62697 -- 63196
ATCTTTGTAATAGATTTCGAGCCACTTGGCAGAGGGTTGTCTTGACATGGCATTTTTTGCTTTTC
ACTTTTATCATTAGCTAAATTAAGATTTTATTTCTGTCTTGTGGTATTTATCTTTTTTCAGAGAT
GTTCTGTTCTCTGTTGTCGAACCACTGTTATTGACTTACCCTCCAGCCGATTGAATACGCTGAAG
AAAGGCATTGAGGAGAGAAATTACCTCTCACTCTTGGGATTTTCTTTTTCAAGTGCCACACCCCC
CATAGTAAAGTAAGCAACAACTCTTTTCAAGTATTCTAATAAGAGATATTTCATCAAGCTTACTA
GAATATTCGAACCTCGACAAAATGACACTTTAATCTTATTATAGCTAAAGAATCACCACATGGGG
AACTTCCTTTTTTAGCTTTCAATTCGCATGTTACAAATAGTCCTTTTTTTCTGAATATCGTATAT
AGTGTAGTTAGTATATATAACGTACTTTTTGACTTTATTTAATTG
Found at i:63222 original size:29 final size:29
Alignment explanation
Indices: 63180--63235 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
63170 AACGTACTTT
*
63180 TTGACTTTATTTAATTGTTTAAAGAATAA
1 TTGACTTTATTTAATTATTTAAAGAATAA
63209 TTGACTTTATTTAATTATTTAAAGAAT
1 TTGACTTTATTTAATTATTTAAAGAAT
63236 GAAAGTAATC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.38, C:0.04, G:0.09, T:0.50
Consensus pattern (29 bp):
TTGACTTTATTTAATTATTTAAAGAATAA
Left flanking sequence: Indices 62680 -- 63179
CGAGGTTTATTGTCGAGATCTTTGTAATAGATTTCGAGCCACTTGGCAGAGGGTTGTCTTGACAT
GGCATTTTTTGCTTTTCACTTTTATCATTAGCTAAATTAAGATTTTATTTCTGTCTTGTGGTATT
TATCTTTTTTCAGAGATGTTCTGTTCTCTGTTGTCGAACCACTGTTATTGACTTACCCTCCAGCC
GATTGAATACGCTGAAGAAAGGCATTGAGGAGAGAAATTACCTCTCACTCTTGGGATTTTCTTTT
TCAAGTGCCACACCCCCCATAGTAAAGTAAGCAACAACTCTTTTCAAGTATTCTAATAAGAGATA
TTTCATCAAGCTTACTAGAATATTCGAACCTCGACAAAATGACACTTTAATCTTATTATAGCTAA
AGAATCACCACATGGGGAACTTCCTTTTTTAGCTTTCAATTCGCATGTTACAAATAGTCCTTTTT
TTCTGAATATCGTATATAGTGTAGTTAGTATATATAACGTACTTT
Right flanking sequence: Indices 63236 -- 63735
GAAAGTAATCGTTGATAAAAAGAACGAGGGGAAGAATCGACGAGGCGAGTGTTCTCGAAGAGAAA
ATCCTGATGATGATGAAAAAAGCGTGAGGAGAATTCGAGATTCAAATGTTAGAAGGTGCAAAATC
AATCGGTGCAGGAGCTGCTACAATTGCTTCAGCGGGAGCTGCTATCGGTATTGGAAACGTCCTTA
GTTCCTCGATTCATTCCGTGGCGCGAAATCCATCATTGGCAAAACAATTATTTGGTTATGCCATT
TTGGGCTTTGCTCTAACCGAAGCTATTGCATCGTTTGCCCCAATGATGGCCTTTTTGATCTCATT
CGTATTCCAAGTCCCTTAGTAATCGTTTACGGTAGATGGGTAAGCTGGCGGGGACCCCAGCTTAG
ATTAGAGTAACTGCCCCAGAAGGTCAGTGAGGTTCCTGCTATGGTGAAGTGAAAGATCTTTCACT
ATAGTGGGAAGAAGACAGGTGGGAGCGAGCGGAGCGAGAGCAAAG
Found at i:67905 original size:23 final size:23
Alignment explanation
Indices: 67879--67968 Score: 162
Period size: 23 Copynumber: 3.9 Consensus size: 23
67869 CGTTGCGCTA
67879 ACGCGCATACGTTTTCTTGCTTC
1 ACGCGCATACGTTTTCTTGCTTC
67902 ACGCGCATACGTTTTCTTGCTTC
1 ACGCGCATACGTTTTCTTGCTTC
*
67925 GCGCGCATACGTTTTCTTGCTTC
1 ACGCGCATACGTTTTCTTGCTTC
*
67948 GCGCGCATACGTTTTCTTGCT
1 ACGCGCATACGTTTTCTTGCT
67969 GGGGTAAAAA
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
23 66 1.00
ACGTcount: A:0.11, C:0.30, G:0.20, T:0.39
Consensus pattern (23 bp):
ACGCGCATACGTTTTCTTGCTTC
Left flanking sequence: Indices 67379 -- 67878
GGATTGACAGGAAGCTTTCTTGCTGTGTGATTCTGCCCCCCACTCTGCCAGCAGCCTATGTGTCG
ATCTATACCCAGTTGATCTACCGCTATTTTACTTTGCACGTTCTGGATAGGCGCGCATCCTCATA
GAGCGAGGGGCAGAAAAGATCAATGAAAGACTAGAGCGCGAGCTAGCTGATCTACCGACAAGTCC
TTGATTTCTTATCCGCGAAGGCAGACTTGGACTCATTGAAGAAAGCACTTGAGGTGAAGACCAAT
GAGCGATTGCGACAACTACGGACCCCTTAACTAGGTTTTTTACTAATACTAACTAATAGGCTTTC
AGAAGCTTTTCCACACAAAGAGGGGAGGAAGTGCTTGCTGCCAACTTGCCAGACGAGCGGACATC
TGAGCTCAGCAGCGCATTTACTATTTGGAGAACAAGCAAGGGGTGAGTGCGCGAAAGCCGTTGCG
CAACAAGCTGCGGATGAGCGCACTAGCGCGAAAGCCGTTGCGCTA
Right flanking sequence: Indices 67969 -- 68468
GGGGTAAAAAGAAGGATTTTTTTCCATTAGCCGAGGAAAGAAGTAGCAAAGGAATATCGCTATCG
TGGGAAAAAAAGAAAAACGTAGGATTGATCGAAGGGAAGGCCAAATCCGGCTAAAAAGAAAAAGA
AGAGATCAAGGAGAGGGAGCTAGACGAGCACTTGCAAGAGAGCGAGCGGCAGATCTAAAACTGCT
ATAGTAAAGTAGAACGAAAGTACCTCCCAAAGGTTCTACCTTTTCTTGTGCGTTCGGGAATAAAT
AGAAAGTTTCAAAATGTATAGAAGACTCTCGATTGATTGGTTGTAATGTTCACGAGGTTGTATAT
AATCCAATGTTCAGTGATATGACTTTCCTCTTGAATTAGAGCTGAATTGCTTGAATTAGTTGAAG
GTGCGGAGTCTTCTTCTTTTGATTTGAGACGAATTCATTTTTCTACTGAAATTTTGATAGGGAAT
AGGGAAAAGCCTTGCCTTATTCAAGAGTACCAGGAAGGAGAAGAA
Found at i:75432 original size:13 final size:13
Alignment explanation
Indices: 75414--75438 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
75404 GCGGTACCCT
75414 TTGATTAAATTGG
1 TTGATTAAATTGG
75427 TTGATTAAATTG
1 TTGATTAAATTG
75439 AAATTTCAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.00, G:0.20, T:0.48
Consensus pattern (13 bp):
TTGATTAAATTGG
Left flanking sequence: Indices 74914 -- 75413
TTGGTGGTAAAGAAGATGTTCTTGTTCTTCCATTCCCCAAACCCACTTCAGCTTTCAAGATTGGG
TTGGTGTTCCGATAGGCGAGAGGTGTAAGCACCGCGAGGTGTGAAGCCAGATCGTACTAAAGACA
ATGAAAAAATTTCGAAAATGATAGATTTCCAAAAAAGAAGTAAAAGCAGAATGAAAGACAGTCCT
ATATTGACAAGGACGAGCTTTTTCACGAAGAAAGCTTCGCGCCCAACTGCTTGTATATCGATCGG
AAAGAAGCAGCTGCAAATGCTATCAGTGGTTCTTCCTTCCTATCCCATCTATCTATAAGAGTTGC
TTGATTCGCCCCCATCTTTAATAGGACTGGACTAAGTTCGGGCAGATCTCCGTCCCATTTCACGG
ATGCATCGCATTGAGAATTGACTCGTCGGATTAACCACTTAGACGGAGAGTTCCCCGTATTCCAT
TTCATTGGCAACTGAAATAGATCTAAACGGATTGCGCGGTACCCT
Right flanking sequence: Indices 75439 -- 75938
AAATTTCAAAATGAATTGAAAAGAATATCAATATAAGGCCCAGATGTAACCTGTGCGGAGCAAGC
CTACACTGGCCTGCAACTGCTTTCTCATTGGCTCCATTAGGGTTCGTAGTCTCATCCTGAAAAGG
TTTTTTTCTTTCTCCGGATATACTCTCAACTTTCCCTGCTATCCTATCAACAGGTCAGTCAATAT
CAGTAGTGGAGGAAGAAGAGTAGTACCCTTTTTTCAGTTAGTCAACATAGTTTAATAATTCAACT
AGTGGTCTTCTTGCCTAAAAAAAGGAGTCAGCCCAACATGGGCAATGATAGACAGACCAAAGATT
TACGCAGTCCTTGTGTGCTTGCTTTGTGCACCGGCACAGCAGAATTCGAAGCTGCTCGGCGTACT
AGCCCTATAACGGAGCTCTTAGTATAAAGCCCAACCACACTCTCTTAGTATAAAGCGGAGCAGGA
CCGTTGGCCTGATCTGACTCCCCACCCAACCGCCCTGGCGTATGT
Found at i:80097 original size:17 final size:17
Alignment explanation
Indices: 80075--80107 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
80065 GAATTCAATC
80075 ATAGTAGCTTCTTAATT
1 ATAGTAGCTTCTTAATT
80092 ATAGTAGCTTCTTAAT
1 ATAGTAGCTTCTTAAT
80108 CATCATAGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.30, C:0.12, G:0.12, T:0.45
Consensus pattern (17 bp):
ATAGTAGCTTCTTAATT
Left flanking sequence: Indices 79575 -- 80074
GATGAACGCTTCCTAAGGGTGGATTTTAGTGAGCGGGGGAGGGGGGAATTTGTTAGGATAACGGG
TTCCCGGGAGTACAGGGAGGTTGAACAAGAGATGGCACTTTTTGACTTGAAAGCCGAGAGGCTAA
AGAAAAAGTCCATCAACCTCGTGTTGAGTCGTTCCATCCCGGTGGGTGAAGAGGCCGATGTCGGG
CGAGCAATCGATATTCTCTTGGACGAGGGCGACCCCTAATCCCTCGCCAAGGCGGAAAGAGCGAT
TTCTCGTCCCAATAGCCAATGATTTGAAAGCCTTCATCCGGGAGTTCAAACAATTACACCCAAAT
GCTCCCTGGGACGACTTCGATGTGCCTTAGTTTCGTTTCTCTTTGTGCATCTTTCTTTTTTAGGA
GATGTATTCCACATCTCTCTCTTTATCTATCTCTGATTTCCATTGCCAAAATGCCCTTGCTTTTC
AATTGTCGTAGGTAACGCTCGAAATCACTGATGTCGAATTCAATC
Right flanking sequence: Indices 80108 -- 80607
CATCATAGACCTCTGGCTGAAAAGATTGAATTACTTCAAAGGGAGGGAGGAAAGGCTAGACTTCA
ATCCCAGGTCACTATTATGCTGAGACTTTCTCTCCGGTGGCTTTCCCGGCGCACTCCCTTTATTT
ATTGTTATTGTGAAAGCCAGTTCCTCGTGATAGTACATGTGGGATTTGGTTATCGAGGGTCCGGA
GGAGATGATTGTGGGAACGAGTCAAAGGTTCGCTACTAGGAAAAAAAGATTCAATCCACTTGTTG
GCCTGCTTCTATGTCCTGTAGTTTATAAGGCATTTCCTTCAAAGGAAAGGGGCTTGTTGGCCCCC
TTCAACGCTCTTGATGCCTGCTTTAAGCTTCGTCGGAGATTTTATGGCCCGTAGCTTACAACATC
ATCTTATGAGAAGGGCATGTAGCTCGATACAATCTAAGGCCAGTTGCTTACTTGCGTACGAAGAA
AAGGGCAGACTAATCAACAATAATGCGCACACGTGAAAATGACCC
Found at i:88601 original size:17 final size:17
Alignment explanation
Indices: 88579--88614 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
88569 AAACTAAAGC
88579 GCAGCAAGAAAACGTAT
1 GCAGCAAGAAAACGTAT
88596 GCAGCAAGAAAACGTAT
1 GCAGCAAGAAAACGTAT
88613 GC
1 GC
88615 GCGTAAGCGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.44, C:0.19, G:0.25, T:0.11
Consensus pattern (17 bp):
GCAGCAAGAAAACGTAT
Left flanking sequence: Indices 88079 -- 88578
TTTCGTAAGGCGGCACAAAAGTTGAAGTTACCAGTTCGCTGGAGTTCAATATTTACTTCGTTCGC
TTATGAACTTAAGGACTTTGCATTTCTCACATTCCAAATGAGATCGATTTCGGCTCAGATGGGAT
ATGGTTATGTGTCCGGTGCTGGTTATTTGTGGGTACCCCTTCAGAGGTATATCTTTGATCCTAAT
AATCACCTTCTATCATTATGGGCGTCAAGCCTGTATGAAGAGAGGACTTATAACGGTCATTTGAA
AATGCTTCTGTTTGGCGCTAAATCGATGTTATCGTTTGGCCGACTGGGTATGAAGGTAGAGGGAG
GGGGAGAAACTCCCATTAGAATGTCCGTCTCAGAGGGGAACTCGGGTTGATAGCTATATAAGATG
TAACTTGACTCAAATAGGAATGGTGCTACCCATTTTCCTTTATTTACGCTGGTGGGTCTTCGAGT
GGCTTTCAACTCCAGCAAGAGTATGCGCAGCAAGAAAACTAAAGC
Right flanking sequence: Indices 88615 -- 89114
GCGTAAGCGCAACGGCTTTCGCGCTAGTGCGCTCATCCGCTGCTTCTTGCTTTAGGCTTTCGCGC
TAGTGCGCTCACCCCTGTTGTAAAGGCAACGGCTTTCGCGCTAGTGCGCTCATCCCTTGCTTCTT
GCTTTAGGCTTTCTTAGTTAGCACTCACCCCTTGCTTGGTTAGTCAAGAAAGTGGCTTCGCTCCT
CTCCTGTAAGTCGAGTTGCTTCGCTCCTCCACCATAGAAAGGGGAAAATCCTAAGCTGTATTGCT
AGTTTCAGACCTCGTGTAGGGAGACTCCTGAAGGTAGGTCCGCGTGCTATTCATCTATTAAAGAG
GCTGCTCCCGAGAAGTCTTCTGTTGGCCTAGTATCTCAATGACGAATTGCATGTGTTAAGCATAA
CATTGGGTTCACTTAGAAATCTTCCAGTCGTGCTTAAAAGACGGCTTTTTGACATGCTTTTCTCC
TCGATTGACAAAAGATGTTTACTTAAGGAATTACTTTCCAAGCAG
Found at i:88685 original size:41 final size:40
Alignment explanation
Indices: 88628--88757 Score: 149
Period size: 41 Copynumber: 3.2 Consensus size: 40
88618 TAAGCGCAAC
88628 GGCTTTCGCGCTAGTGCGCTCATCCGCTGCTTCTTGCTTTA
1 GGCTTTCGCGCTAGTGCGCTCATCC-CTGCTTCTTGCTTTA
* * * *
88669 GGCTTTCGCGCTAGTGCGCTCACCCCTG-TTGTAAAGGC--AA
1 GGCTTTCGCGCTAGTGCGCTCATCCCTGCTTCT---TGCTTTA
88709 CGGCTTTCGCGCTAGTGCGCTCATCCCTTGCTTCTTGCTTTA
1 -GGCTTTCGCGCTAGTGCGCTCATCCC-TGCTTCTTGCTTTA
88751 GGCTTTC
1 GGCTTTC
88758 TTAGTTAGCA
Statistics
Matches: 73, Mismatches: 8, Indels: 16
0.75 0.08 0.16
Matches are distributed among these distances:
39 3 0.04
40 6 0.08
41 56 0.77
42 5 0.07
43 3 0.04
ACGTcount: A:0.10, C:0.32, G:0.25, T:0.34
Consensus pattern (40 bp):
GGCTTTCGCGCTAGTGCGCTCATCCCTGCTTCTTGCTTTA
Left flanking sequence: Indices 88128 -- 88627
TATTTACTTCGTTCGCTTATGAACTTAAGGACTTTGCATTTCTCACATTCCAAATGAGATCGATT
TCGGCTCAGATGGGATATGGTTATGTGTCCGGTGCTGGTTATTTGTGGGTACCCCTTCAGAGGTA
TATCTTTGATCCTAATAATCACCTTCTATCATTATGGGCGTCAAGCCTGTATGAAGAGAGGACTT
ATAACGGTCATTTGAAAATGCTTCTGTTTGGCGCTAAATCGATGTTATCGTTTGGCCGACTGGGT
ATGAAGGTAGAGGGAGGGGGAGAAACTCCCATTAGAATGTCCGTCTCAGAGGGGAACTCGGGTTG
ATAGCTATATAAGATGTAACTTGACTCAAATAGGAATGGTGCTACCCATTTTCCTTTATTTACGC
TGGTGGGTCTTCGAGTGGCTTTCAACTCCAGCAAGAGTATGCGCAGCAAGAAAACTAAAGCGCAG
CAAGAAAACGTATGCAGCAAGAAAACGTATGCGCGTAAGCGCAAC
Right flanking sequence: Indices 88758 -- 89257
TTAGTTAGCACTCACCCCTTGCTTGGTTAGTCAAGAAAGTGGCTTCGCTCCTCTCCTGTAAGTCG
AGTTGCTTCGCTCCTCCACCATAGAAAGGGGAAAATCCTAAGCTGTATTGCTAGTTTCAGACCTC
GTGTAGGGAGACTCCTGAAGGTAGGTCCGCGTGCTATTCATCTATTAAAGAGGCTGCTCCCGAGA
AGTCTTCTGTTGGCCTAGTATCTCAATGACGAATTGCATGTGTTAAGCATAACATTGGGTTCACT
TAGAAATCTTCCAGTCGTGCTTAAAAGACGGCTTTTTGACATGCTTTTCTCCTCGATTGACAAAA
GATGTTTACTTAAGGAATTACTTTCCAAGCAGGTCTTCGAAATGACCTCTTCCGAATGAGTGATC
CAAAATTCTCGGAGTTTAGCAACTCGATAGTACGTCGAATTTTGGATTGCACGAGAAAGGAAAAG
CCTGGGCGAGAAGAATCTTCCAGGGAAGTCTTAAGAATCTACGTA
Found at i:91888 original size:19 final size:19
Alignment explanation
Indices: 91864--91902 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
91854 CCTCTCTTTC
91864 CAGCAAGAAAACGTATGCG
1 CAGCAAGAAAACGTATGCG
91883 CAGCAAGAAAACGTATGCG
1 CAGCAAGAAAACGTATGCG
91902 C
1 C
91903 GTTAGCGCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.41, C:0.23, G:0.26, T:0.10
Consensus pattern (19 bp):
CAGCAAGAAAACGTATGCG
Left flanking sequence: Indices 91364 -- 91863
TACCGACCGTTCCGACGCGCCCTTGACCTATTTTGATGTTGACCAAAAACCTATCTCTAAAGTGG
AGCCTAGTTTAAGCTGTCAAACAAGTGATGATTGAATGAAAGAAAAACCAAACGTAGGGATATGG
ATGGAGTCTCGCTCAGTAAAGAGAGTTGTAGGATTCGTAAAACAGGAGAAGATTACTTTCAAATG
ACAACTGCTTCTTCCTGCTGCGAGGGCCTTGCACGAAACCAAACCGCCCCCCGCCCGATCAAGTA
CCTGTTGCTTCGCTGGTAGGCCTACTTAGGTTAGGGTTCCAAACCTCAGTTCTTACCAACCTCCG
GTGTGTAATCTACATCTTTCTAGCTAGAACTCGGTCGAATAAGAATCATTGATTCCCTCTGCTGT
CAATTTCTTATTCATTGCGTTCGGCCTTCCACGCCTTTCCTTACAGGAAAGCGGCTTAAAAGCGC
CTCTCTTTCCATATAGTCAAGAGAGTTGCTCCGCTCCTCTCTTTC
Right flanking sequence: Indices 91903 -- 92402
GTTAGCGCAACGGCTTTCGCGCTAGTGCGCTCATCCGTCTTGCGCAACGGCTTTCGCGCTAGTGC
GCTCACCCCTTGCTTCTTGCTTTAGGCTTTCGCGCTAGCGCACTCAATCGTTGCTTGGTGCGCAA
TGGCTTTCTTAGTTAGCGCTTACCCCTTGCTTGGTTAGTAAAGCGAGCGGCTGAACGCTCCTTTC
TCATCTCAAACCATAACTAGTCTTCACGTTAGGGAAGATAAGGGAAGACCGCCTGAGCGAAGCGA
CCGAAGGAACTTGACTTATCCGAACCGAACGATAGCGGCTTAAAGCGTTGCCTATCACGAGCAGC
CTCGCTCCTTGATCGGCGGGGAGGAGCATCTCAAAGTATGGGGCAAAGGATGTTGCGTTTTGACT
TTGTCTCCCGGGATCCACCACAGGTTGGGTTTGAGAGCCGTGTGATGGGTGACTATCCAGCACGG
TTCGGAGAGCACTTTTAGTCTGCGCTGGTGAATGGAAGCCCCCCC
Found at i:94233 original size:24 final size:24
Alignment explanation
Indices: 94201--94247 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
94191 AAGCAGCGCG
* *
94201 TCGTGCTATAATCGGACACTTCCA
1 TCGTGCTATAAGCGGACAATTCCA
*
94225 TCGTGCTATGAGCGGACAATTCC
1 TCGTGCTATAAGCGGACAATTCC
94248 GAAGAAATGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (24 bp):
TCGTGCTATAAGCGGACAATTCCA
Left flanking sequence: Indices 93701 -- 94200
ACATTGAATCGGTCAAGATCAAATCTGTTTATCAAAGTGCTTCTCCGATTGCTCAAGACATCTCT
TTTCAACCGAGGAACAAAACAAGATCATTTCGTTCCATTTTTAGTCAAATAGTGAAGGATATTCC
ATTAGTAATGAAAAAAGGGGTGGAGGGGATCCGTATATGTTGTTCAGGTCGATTAGAAGGTGCAG
AAATAGCTAGAACTGAATGCGGAAAGTATGGAAAAACATCTCGTAATGTATTTAACCAGAAAATA
GATTATGCTCCTGCGGAAGTATCTACTCGTTACGGAATCTCAGGTGTCAAAGTGTGGATTTCATA
TAGTAAAAAAAAAAAGGGACGTGCTATATCCGAAACGTACGAAATATAGTAAATATCGTAAAGGC
AGATGTAGTAGGGGTTGCAAACCGGACGGTACACAACTTGGTTTTGGAAGATATGGCACTAAAAG
TTGTAGAGCTGGTCGTCTTTCATATCGAGCCATTGAAGCAGCGCG
Right flanking sequence: Indices 94248 -- 94747
GAAGAAATGGTAAGATATGGGTAAGAGTTCTCGCAGATATCCCTATTACCGGGAAACCTACAGAA
GTAAGAATGGGAAGAGGAAAAGGAAATCCTACGGGTTGGATTGCTCGTGTGTCCAGGGGACAAAT
CCTATTTGAAATGGATGGTGTGAGTTTGTCAAATGCTCGACAAGCCGCTACATTAGCGGCGCATA
AACTATGTTCGTCAACCAAGTTTCTTCAGTGGTCGTAAGCTTATTAATCTGACCAAAATTCTCCA
TTTTGGTACACGCCAAAGCCTTCCATTTCGCCGGATTGAAAGAGCCATCAATCACTATGATCTCT
TTCTTAGAAAAGAAATTGCGTAAATTCTGCCTTTTTTTCTCCCATGCTTTCCGTTGGTCAACAAC
CAACTAAAGTGCTCTATACTTCTTCACTACTCGTACAGGGAAGGTGGAAGAAATTCAGTCTCTCT
TTTTTTTGGGGGGAGCAGAGCAGTCAAAGAATGAACCAAACCAAA
Found at i:101599 original size:24 final size:24
Alignment explanation
Indices: 101567--101614 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
101557 AGTCCCTGTA
101567 CCAGCATTTCCAAATAACATAGAT
1 CCAGCATTTCCAAATAACATAGAT
101591 CCAGCATTTCCAAATAACATAGAT
1 CCAGCATTTCCAAATAACATAGAT
101615 GTAGACTGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.25, G:0.08, T:0.25
Consensus pattern (24 bp):
CCAGCATTTCCAAATAACATAGAT
Left flanking sequence: Indices 101067 -- 101566
GTCGCAGATGTTTTTCCAGGACTGCTTCGATTTTTTTTTGACCGGCGGTCTCGTCCTGCTGTTGA
TGGACAGGTGGGTGTGAGCCCCCTGGGGGGTTCTCTTCCGGATCTTGCGAAACTGCTGGAATATG
GAAAGACCCCGGGTCCGGAGGAGAAGGAAGCGGCCCACTTGATGCAACAGGCGCCGAAGGATAGA
ACGGAAGGAGAGCCTTACTAAGCTCGTCCATAAACAGTAACCCAAGCGCAAAGGCGACCTTTGAG
AGAATAAGAAGACAGATTAGCCTTGCTATACGAAAGAAAAGGATTTGTACTCTTTTTGGGACATT
CTTTACAATTGGGAGAGAAGAAAAGAAAAGGAGGAGTTCTCGGGAATCGCATAGAAAAAAAATAA
AAAAAGTTAGACCGGCCCTCTCAAATAAAAATATACGTCGAAACGAAGATGTCCAAAAATTGAAA
TACCTATCGCATAACATAGTAGTACCAAGTAGTATAGTCCCTGTA
Right flanking sequence: Indices 101615 -- 102114
GTAGACTGAGAATGAAAAGTAGACCGGGAATTCACCCCTCCCCAGGGTGAAGGTAAGACGACATT
AGTTTTCATAATAATTTAATTTTCTTCTTTTCCCCCGGATCCCAGGGTTAGGGTATTCCCTATTA
AAGAGGGTGTCTTTATGTGTATTCTATTCCCTTTAGCGATACGGCTCTAAGCTCCTTTCGGATAG
TCATGGCTCCCTCAGGGTGAGTGCCATCGCTGGTTCCTATTGTGAGTTAAGGCAGTACCTGTGGT
CTTCATATTATTGACCCCCAAAGGGCGATATGGTCTGTAATAGAATGGATAGGCAATTAGTCATG
GTTCATCTCCGCACCTCCTTCAGGGTGCGAGAGTGATATTCCAGAGCTGTATTAAGTGCTATTCG
ATAGCCCGCTTAAGTTGTTTCAAGCTCTAGTTCCCATCCCTGTTGCTGTTCTCATTCGATGCCAT
ACCCGAATGTCAGTTATGTTGTTTTCCCCTAAAGGTTGTCTTTTT
Found at i:106321 original size:19 final size:19
Alignment explanation
Indices: 106297--106335 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
106287 TTGCGCTAAC
106297 GCGCTTTAGTTTTCTTGCT
1 GCGCTTTAGTTTTCTTGCT
106316 GCGCTTTAGTTTTCTTGCT
1 GCGCTTTAGTTTTCTTGCT
106335 G
1 G
106336 GAAAGAGAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.05, C:0.21, G:0.23, T:0.51
Consensus pattern (19 bp):
GCGCTTTAGTTTTCTTGCT
Left flanking sequence: Indices 105797 -- 106296
AAAGCAAGTACATCCTTAACGGCCTCTATTCCTGACGTGAACGGCCGCTTTCTTGGAACTAATTC
ATAGGCACTTTCCATTAGTTAGACTTCACACACTATATAAACAAATAGTTGAAGCGTGCGATAGA
AAGCGGAAAAACGAATTGATTGACTATTGAGTGCAAGCCCGTAAATAGACGACTATGGGCAGTTC
AGGTGCGCTTAAAGTCAACTACAACTAGAAGGCATGCCGATCTTGCCACCAACAAACCTTTGACT
TTGACTGTGAAAAGCTCCAAATAGGCACACAGTAGTTTAGAGTAGAAGGAGCGGAGCCACTTGAC
TGCTAAGGAAAGGAGCTGAAAGCCACTCGCCTTTACTAACCAAGCAAGGGGTAAGCGCTAACTAA
GAAAGCCATTGCGCACCAAGCAACGATTGAGTGCGCTAGCGCGAAAGCCGTTGCCTTTACTTTAA
AGAAGCAAGGGGTGAGCGCACTAGCGCGAAAGCCGTTGCGCTAAC
Right flanking sequence: Indices 106336 -- 106835
GAAAGAGAGGCGTGAAAGCCACTTCCTTGACTAACCAAGCAAGGGGTGAGTGCGCTAGCGCGAAA
GCCTAAAGCAAGAAGCAGCGGATGAGCGCACTAGCGCGAAAGCCGTTGCGCTAACGCGCATACGT
TTTCTTGCTGGAGAGGAGTAGAAGACATATGGCATCCGAAGAAGTTGTTGGAGCACTATGAGAGT
TTGCTTTTTCTCTTTCTCAGAGCGGTCTGATCCCTTATCAGAAATCTCTCTCCCAGCTTGAATCT
CGTTCAATCCATAAACACGTTCTGGTGAAAGCTTACCCTGAACTCAAGAAAGCCACGAGAGTCCG
GCTTCCGGCTTTCCAGAGACTGTTTTTTCCGCTGCTGTAGTCGATTTACTGGTTTTGTTTTGCGA
GGAATGTTTTCCGTCGATGCGGGGCAGGATAAATAAACCTTTGTGATCCAAAGCTCGAGAAGGAA
GAGGTGGTGTCTCCTTACTTACGATAACTCTAACTCTCGTGAAGC
Found at i:108497 original size:17 final size:17
Alignment explanation
Indices: 108475--108509 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
108465 TTAGTGGAGC
108475 GCATACGTTTTCTTGCT
1 GCATACGTTTTCTTGCT
108492 GCATACGTTTTCTTGCT
1 GCATACGTTTTCTTGCT
108509 G
1 G
108510 GAAAGGAGCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.11, C:0.23, G:0.20, T:0.46
Consensus pattern (17 bp):
GCATACGTTTTCTTGCT
Left flanking sequence: Indices 107975 -- 108474
GAAAAATCCCCAGTTTGGGCTACTTTTAATCAGAAAAAGCGGCATTTGAAGCATGGATTTATGAA
ATTACATAAGATAGGCAAATGGGCCCATTTTAGTCAAAAGAGTGGAAAAGAAAGAAAAAAGACGG
GACCAAGCAAGGGATGAGCGCTAACGCGCGAAAGCCGTTGCCTTTAAAGAAGCAAGGGGTGAGCG
CACTAGCGCGAAAGCCGTTGCGCTAACGCGCAGCCGTTTTCTTGCTGAGTACCCGCATCCGTTTT
CTTGCTGGAAGGAGAGTTGCGTAGCTGTTCTTCTTCAACACTCCTGTAAGTCTCGTTACTTTCTG
TTTATAGGAGAGTGAAAACTGCCTTCCGCTCCTCTTTTTATAATAAAGTCGAGTGGCGTGAAAAG
CCATTTGAACTTGCTTGATTAACCAAGCAAGGGGTGAGTGCGCTAGCGCGAAAGCCTAAAGCAAG
ACGGATGAGCGCACTAGCGCGAAAGCCGTTGCGCCTTAGTGGAGC
Right flanking sequence: Indices 108510 -- 109009
GAAAGGAGCGAAAGCAACTTCCTTGACTATAAGCTTCGGTTCGAAGAGAAAAGGAAACGAAACAA
TAAAGGTTCACTTTCATTGGTGCTTCCCCCTACACGTATATTGGGGCGAGAGCGGGCGCTAGCTT
CCTAAACAGGATTTTCTATGAGGTAGAGGCTGGATCAATAAAAGAAAGATAAGGAAAGTGTACAA
GATTCCAATCGGGCTACCTCTGAAGGAAGGTGGCGGCGAGGAAGGGTATTTCGAATCTCGATCAA
ATAGCGTAGCACGGGACCGCGCCAAGCATAGCGAGTTAGGTATGGGCTTTCTTTCACTACCAGAA
TCACCATTTGGCAGGGCTACTAGGACTTGGGTCTCCCTCTTGGGCGGGGTTCTATATAGTGAGAA
GGACCAATTGCATCCGTTTTCTTGCTGGGGCGAAGTCTCATTTTTGACTTGAAAGAAAATAGTCG
CAGGAGATATATTGGAAGTCTAAGTAGCGAACTCTAGGCAGAAAA
Found at i:117705 original size:19 final size:19
Alignment explanation
Indices: 117683--117721 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
117673 TTGCGCTAAC
117683 GCGCATACGTTTTCTTGCT
1 GCGCATACGTTTTCTTGCT
117702 GCGCATACGTTTTCTTGCT
1 GCGCATACGTTTTCTTGCT
117721 G
1 G
117722 GAAAGAGAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.10, C:0.26, G:0.23, T:0.41
Consensus pattern (19 bp):
GCGCATACGTTTTCTTGCT
Left flanking sequence: Indices 117183 -- 117682
TGCTGAATGAACTGTCTCGGAGAAGGCCACCAGCACCCGACTTAGCTGAATGCCCCGTGAAGCGT
GAACTTCGCCAACCTTCTCCCTTTCTTATATAAAGTATATAGAAAGATATAGTTTCGACTGAGAG
AGAAGATTCTCAAAGACGCCCGGAGTCGTTAGCTTAAAGGCAAAGAAGGAGGGAAAAAAGTATCC
CACCATGTGAATGTGAGAAAAAGGTATTTCTATACCTTTGGGAACGTGCCTCCCCTTTACCTTAG
CCAACGGGGGGAAACCACAGTGACAGTAGTAGAGAGAGAGAAAAGAGGATTATCAAGCCAGGGGG
GCTTAGCTTAAAGGCAAGGAGAGGAGCGAAAGCCACTTGCTTGACTAACCAAGCAAGGGGTAAGC
GCTAACTAAGAAAGCCATTGCGCACCAAGCAACGATTGAGTGCGCTAGCGCGAAAGCCTAAAGCA
AGAAGCAGCGGATGAGCGCACTAGCGCGAAAGCCGTTGCGCTAAC
Right flanking sequence: Indices 117722 -- 118221
GAAAGAGAGGGGTGAAGGAGTTTGTCTCTTGAAAATGGTTTTCTTTTTTTATTCTCTTGAAGGTC
TTTTTCTCTATTTTATTTCATGGTATCAAAGCCAACAAGAGAATTAGGGTGCTAAAAAAGAAGCC
AAAACCTGCTTGTTTAAAGAATCAAACTGTTCCTGTCTTTTTTTTTTTTATTTTATGACCGAGGA
AACCTTTTTGTTATATGCCCTATACCCACCCAATTTCTTATGTACACAATAAGGATCATAATTAT
TGTTGTTTGGATACCAAACTATCTTATCAATATATAACCAAAAAAGCCTTCGATATAGTGATGAA
ATTGTGATACATAATCAATCCTATTTGTTTTGTTCATTACTAAAATGAATCGAATCCTATCAAAT
ATTTATATTTCTCCTTTGAATTACTCATATATATCCTATGAATTTCATTTCGCACCGGAAACTAT
TCTAGGAGAAGTTCGAATCCGTTCCGTTCGGATATTGATTGGTCT
Found at i:126871 original size:19 final size:19
Alignment explanation
Indices: 126826--126871 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
126816 TCCAGCAAGA
126826 GTATGCGCAGCAAGAAAAC
1 GTATGCGCAGCAAGAAAAC
*
126845 -TAAAGCGCAGCAAGAAAAC
1 GT-ATGCGCAGCAAGAAAAC
126864 GTATGCGC
1 GTATGCGC
126872 GTAAGCGCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 1 0.04
19 21 0.91
20 1 0.04
ACGTcount: A:0.41, C:0.22, G:0.26, T:0.11
Consensus pattern (19 bp):
GTATGCGCAGCAAGAAAAC
Left flanking sequence: Indices 126326 -- 126825
GCGAATGATGGTGGCTCCATACGGGTAGACGTAGGCCCTGAAACCATAACAAAGGCAAGACAATT
ACAGGGAGGACGTACGTGTTCTCGGGCGAGTGCGGACTCGGTTAGTATACAAGATCATCAATATA
GTAATAGGATGCATCTGCTGAAGGCAAGACTCATGTAACAACAAGCTGGACCGAAGCTCAGCCAT
AGTTGGTTTTGGTCGTTGAAGCTTCGCCGTAGTGACAAAGCTTTCATAGTCCGAAGGCAGGCCAG
CAAGAAGGAATGTAAACATATCAGATTGGGACACCGGTGCATTGATAGATGCCAAGGAGTCACAA
CTGTTCTTGAATGTACGAAGGTAAGCCGCCATAAACGGATTTCCTTTCTTCTCTCTTTCACTATC
ATGTTCCTCACTAACCCGAAAGGCTTTCTTTAAACCGGGAGGGGATCTTTGAACCTTGTTTGAGC
TCCTCTCCTTACTTATAATTCGAGTGGCTTTTCGCTCCAGCAAGA
Right flanking sequence: Indices 126872 -- 127371
GTAAGCGCAACGGCTTTCGCGCTAGTGCGCTCACCCCTGTTGTAAAGGCAACGGCTTTCGCGCTA
GTGCGCTCATCCGCTGCTTCTTGCTTTAGGCTTTCGCGCTAGTGCGCTCATCCCTTGCTTCTTGC
TTTAGGCTTTCTTAGTTAGCACTCACCCCTTGCTTGGTTAGTCGAGTTGCTTTGCGCCCCTTTAC
AATATGAAGAAAGACTTGTCAGAATTTTGCGTAGCTGTCTTTCTCCTCGACTCCATTTGCATTAT
GTCATGGAGAAAGAGGTCCACCCCCCTTTTTATGTCGAGTGGATCCTCCAGGTGGATCCCTTGAT
CCTTTATAATGTTCGCCATTTTTTCCATTATATGATCTTGTCGTATTAACGCGTTCTCAAATGCT
ATATTTCGGGGATGGGGCTTCGGAAATCGATTTAATGATTCCCGCTTTGCCTTAGCCTTCTCTAT
TTCTGAAGTACCTGCAGGCTGCTCCTCGCCCTCGTCTGATTGAGA
Found at i:126969 original size:41 final size:41
Alignment explanation
Indices: 126924--127012 Score: 162
Period size: 41 Copynumber: 2.2 Consensus size: 41
126914 TAAAGGCAAC
126924 GGCTTTCGCGCTAGTGCGCTCATCCGC-TGCTTCTTGCTTTA
1 GGCTTTCGCGCTAGTGCGCTCATCC-CTTGCTTCTTGCTTTA
126965 GGCTTTCGCGCTAGTGCGCTCATCCCTTGCTTCTTGCTTTA
1 GGCTTTCGCGCTAGTGCGCTCATCCCTTGCTTCTTGCTTTA
127006 GGCTTTC
1 GGCTTTC
127013 TTAGTTAGCA
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
40 1 0.02
41 46 0.98
ACGTcount: A:0.07, C:0.31, G:0.24, T:0.38
Consensus pattern (41 bp):
GGCTTTCGCGCTAGTGCGCTCATCCCTTGCTTCTTGCTTTA
Left flanking sequence: Indices 126424 -- 126923
GGACTCGGTTAGTATACAAGATCATCAATATAGTAATAGGATGCATCTGCTGAAGGCAAGACTCA
TGTAACAACAAGCTGGACCGAAGCTCAGCCATAGTTGGTTTTGGTCGTTGAAGCTTCGCCGTAGT
GACAAAGCTTTCATAGTCCGAAGGCAGGCCAGCAAGAAGGAATGTAAACATATCAGATTGGGACA
CCGGTGCATTGATAGATGCCAAGGAGTCACAACTGTTCTTGAATGTACGAAGGTAAGCCGCCATA
AACGGATTTCCTTTCTTCTCTCTTTCACTATCATGTTCCTCACTAACCCGAAAGGCTTTCTTTAA
ACCGGGAGGGGATCTTTGAACCTTGTTTGAGCTCCTCTCCTTACTTATAATTCGAGTGGCTTTTC
GCTCCAGCAAGAGTATGCGCAGCAAGAAAACTAAAGCGCAGCAAGAAAACGTATGCGCGTAAGCG
CAACGGCTTTCGCGCTAGTGCGCTCACCCCTGTTGTAAAGGCAAC
Right flanking sequence: Indices 127013 -- 127512
TTAGTTAGCACTCACCCCTTGCTTGGTTAGTCGAGTTGCTTTGCGCCCCTTTACAATATGAAGAA
AGACTTGTCAGAATTTTGCGTAGCTGTCTTTCTCCTCGACTCCATTTGCATTATGTCATGGAGAA
AGAGGTCCACCCCCCTTTTTATGTCGAGTGGATCCTCCAGGTGGATCCCTTGATCCTTTATAATG
TTCGCCATTTTTTCCATTATATGATCTTGTCGTATTAACGCGTTCTCAAATGCTATATTTCGGGG
ATGGGGCTTCGGAAATCGATTTAATGATTCCCGCTTTGCCTTAGCCTTCTCTATTTCTGAAGTAC
CTGCAGGCTGCTCCTCGCCCTCGTCTGATTGAGAAATAGGAAAGAACGCAGAATCGCCAGAAGGC
GCAGGAGGTTGATTGAGACCCCCTGCCGACGAAGACGAAGGAAGAAATGGAGCGCATGGATACAA
GCTGCGAAAGTTCATCCATAAACAGTAACCCAAGCGCAAAGGCGA
Found at i:135396 original size:34 final size:35
Alignment explanation
Indices: 135358--135425 Score: 93
Period size: 36 Copynumber: 1.9 Consensus size: 35
135348 TGAAAGGAAC
* * *
135358 AAGCAAG-GGGTGAGTGCGCTAGCGCGAAAGCCTA
1 AAGCAAGAGGATGAGCGCACTAGCGCGAAAGCCTA
135392 AAGCAAGACGGATGAGCGCACTAGCGCGAAAGCC
1 AAGCAAGA-GGATGAGCGCACTAGCGCGAAAGCC
135426 GTTGCGCTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 7 0.24
36 22 0.76
ACGTcount: A:0.32, C:0.24, G:0.35, T:0.09
Consensus pattern (35 bp):
AAGCAAGAGGATGAGCGCACTAGCGCGAAAGCCTA
Left flanking sequence: Indices 134858 -- 135357
GAGCGAGATATGTAATATCACTGCTAGTTCAGTGTTAAGTGGGAAAGTGAACGAACGGTCAGGGT
AGAAGAATTCTAGATATAAGAGGAAGTGTTCAATTTGTTTAATAGGAAAGCTTAGAAGCGTATCT
GTACTTCTAGTTGAGTACCTCAAACCTCATCTAGTAGATAGGGGAGTTCAGAAGTCAAGGGTCCG
TAGGAGGAAATAGATCCAGTCAAGATAGGAAGTGAAGTAGGATAGCTTCGCTTCCCATAAAAAAA
GACCTCCTTTCTTGTATTAATGGTGTCTTTTCTTACTTGTACTTGAGTACAGGTAGTAGTGGAGT
TGAAGAGGTCGCTATCTCCCGGCTCGCTTTGTAGACTTCACGAACAAAGAATAGATATGACCGAC
AATCGGATGCCAATCAGTTTTCTGTCCTGCCTCTGCCTGTAGGTAGTAGGTCCATGCTCTTTCCG
ATAAGCGGATAAGTTGAGGGGCGAAGTGACTCGACTGAAAGGAAC
Right flanking sequence: Indices 135426 -- 135925
GTTGCGCTTACGCACATACGTTTTCTTGCTGGGGCGAAGCTTACCAAAAGAAACTTCCCTTGCCT
CCTTCTGGCCTTGACACTCGAGTTGTTGTAGCTCTTGTTTATTTATTACTCTTAATAAGTAAGAG
AAAGAATAAAAAGAAAGGTAAGAAGCCTCCATAGTAAGAAGAAATGAAGTACAGGATGAATGAAA
ATACCCTTCGTATATCTTTCCTCTTTAGGGAAATCATAAAATACACATAAGAAATAAGACACCCT
TTAGGGGAAAAGAAAAGACTCTTTCTTATTTCCGGTGCGATGATCCCTATTCCTCTCCATGCGAA
TAGCCCTCTTCATATAGGTCTATGAAAGTCTTAGCATCTCCCAAGGCAATTGCTCCACGGGCTGG
ACATCAGATGTTGGCGATGACAATGTTGACTGCACTGCGGTATGTAAAAGCTTTCGCGGCCATTC
TTCAATTCAAAATCAACGGTCGATAAAAGAGAAATGCCCTCCCCT
Found at i:146929 original size:15 final size:16
Alignment explanation
Indices: 146909--146950 Score: 50
Period size: 19 Copynumber: 2.5 Consensus size: 16
146899 GTCAACACTC
146909 CAGCAAGA-GTATGCG
1 CAGCAAGACGTATGCG
146924 CAGCAAGAAAACGTATGCG
1 CAGCAAG---ACGTATGCG
146943 CAGCAAGA
1 CAGCAAGA
146951 AAACGTATGC
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
15 7 0.30
16 1 0.04
18 1 0.04
19 14 0.61
ACGTcount: A:0.40, C:0.21, G:0.29, T:0.10
Consensus pattern (16 bp):
CAGCAAGACGTATGCG
Left flanking sequence: Indices 146409 -- 146908
GAAAAAACGATAGACATCTAGCGCATTCACTCGTTTTTTCTTTCTGATAGGCCAACTCAAAGAGG
GAAATGCAAGGGGCGTTAGCGGTCTTTTTTGCCTCGCCTGCTACTGGGAAGAGAGAGCCGCTGTC
ATTCTTCGCTTCGTTCGAGAATCAACTGCACATGAATAGGCTCTTCCTTAGGCCTTCAAGGAGGA
AGCGGCTTTTTTCCTAAATTCCCGGGAAAATGAAATGAAATTCTTTTCGTAAGGCAAGAAAGTCG
CCTAAGGAAAGTAGAAGTCTATGCACACTAACCGAATCTTTGGGGAAGGATGGTGGTGCAAATTG
GCCTTTTCCCTTCTCCTTTCTAAAGCAAAAAAGAATGTCATCATTCTGATCGTGACTTGAAAAAA
GAAAGAAGAGAAGGAACTTGGAGTTGGCGCCCACATAACGGATTGCTTGCTTACCAAGCTTAAGC
AAGTGGCTTGGAGCGCCTCTCCAACGAGTCAAGTGGTCAACACTC
Right flanking sequence: Indices 146951 -- 147450
AAACGTATGCGCGTTAGCGCAACGGCTTTCGCGCTAGTGCGCTCATCCGTCTTGCTTTAGGCTTT
CGCGCTAGTGCGCTCACCCCTTGCTTAAAGTAAAGGCAACGGCTTTCGCGCACTCACCCCTTGCT
TGGTTAGTCGAGTGGCCTTCGCTCCTCCAGTTCTATTATTATTGACTTGACTTATTATTATAAAA
ACTACTCACTATCCAAATGAAAGACGATCGATTATCTACCCAAGAAGATAGAGAGTCCCACATAC
GAGAAAAGGTCACAAATAGAGTTGAACCAAGTAACATTGCAAAGGCATAATGATAGTAGGGTCGG
GATATCCCCGCCCTCCGAACCGGACGTGAGGGTCTCCCCTCATCCGGCTCTCTGCAGGGGAATCT
CCACTCACTGCTTCCCCTAATATCCTCCCTTTACCACATCATGGGGGTTTACAGGAGATCCCAGA
GGCTCGCTCGGAAAGGCTGCTATACCATACCTTTTGACTTAACTC
Found at i:146941 original size:19 final size:19
Alignment explanation
Indices: 146917--146962 Score: 92
Period size: 19 Copynumber: 2.4 Consensus size: 19
146907 TCCAGCAAGA
146917 GTATGCGCAGCAAGAAAAC
1 GTATGCGCAGCAAGAAAAC
146936 GTATGCGCAGCAAGAAAAC
1 GTATGCGCAGCAAGAAAAC
146955 GTATGCGC
1 GTATGCGC
146963 GTTAGCGCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.37, C:0.22, G:0.28, T:0.13
Consensus pattern (19 bp):
GTATGCGCAGCAAGAAAAC
Left flanking sequence: Indices 146417 -- 146916
GATAGACATCTAGCGCATTCACTCGTTTTTTCTTTCTGATAGGCCAACTCAAAGAGGGAAATGCA
AGGGGCGTTAGCGGTCTTTTTTGCCTCGCCTGCTACTGGGAAGAGAGAGCCGCTGTCATTCTTCG
CTTCGTTCGAGAATCAACTGCACATGAATAGGCTCTTCCTTAGGCCTTCAAGGAGGAAGCGGCTT
TTTTCCTAAATTCCCGGGAAAATGAAATGAAATTCTTTTCGTAAGGCAAGAAAGTCGCCTAAGGA
AAGTAGAAGTCTATGCACACTAACCGAATCTTTGGGGAAGGATGGTGGTGCAAATTGGCCTTTTC
CCTTCTCCTTTCTAAAGCAAAAAAGAATGTCATCATTCTGATCGTGACTTGAAAAAAGAAAGAAG
AGAAGGAACTTGGAGTTGGCGCCCACATAACGGATTGCTTGCTTACCAAGCTTAAGCAAGTGGCT
TGGAGCGCCTCTCCAACGAGTCAAGTGGTCAACACTCCAGCAAGA
Right flanking sequence: Indices 146963 -- 147462
GTTAGCGCAACGGCTTTCGCGCTAGTGCGCTCATCCGTCTTGCTTTAGGCTTTCGCGCTAGTGCG
CTCACCCCTTGCTTAAAGTAAAGGCAACGGCTTTCGCGCACTCACCCCTTGCTTGGTTAGTCGAG
TGGCCTTCGCTCCTCCAGTTCTATTATTATTGACTTGACTTATTATTATAAAAACTACTCACTAT
CCAAATGAAAGACGATCGATTATCTACCCAAGAAGATAGAGAGTCCCACATACGAGAAAAGGTCA
CAAATAGAGTTGAACCAAGTAACATTGCAAAGGCATAATGATAGTAGGGTCGGGATATCCCCGCC
CTCCGAACCGGACGTGAGGGTCTCCCCTCATCCGGCTCTCTGCAGGGGAATCTCCACTCACTGCT
TCCCCTAATATCCTCCCTTTACCACATCATGGGGGTTTACAGGAGATCCCAGAGGCTCGCTCGGA
AAGGCTGCTATACCATACCTTTTGACTTAACTCTACTCTAGTAGT
Found at i:149034 original size:19 final size:19
Alignment explanation
Indices: 149010--149086 Score: 136
Period size: 19 Copynumber: 4.1 Consensus size: 19
149000 CCTCTCTTTC
* *
149010 CAGCAAGAAAAGGGATGCG
1 CAGCAAGAAAACGTATGCG
149029 CAGCAAGAAAACGTATGCG
1 CAGCAAGAAAACGTATGCG
149048 CAGCAAGAAAACGTATGCG
1 CAGCAAGAAAACGTATGCG
149067 CAGCAAGAAAACGTATGCG
1 CAGCAAGAAAACGTATGCG
149086 C
1 C
149087 GTTAGCGCAA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 56 1.00
ACGTcount: A:0.42, C:0.21, G:0.29, T:0.09
Consensus pattern (19 bp):
CAGCAAGAAAACGTATGCG
Left flanking sequence: Indices 148510 -- 149009
TCATTCAAAACTTGATCGAAAAACCAGCGTTTATTGAAGAAGCTATAGAGTCGATTACTAATAGT
ACTAGTTTGAAAGGCTCGTTGGAATTGATCCGCTACGGGATTAACATTATACGCAACATAAGCAC
CTGAAGTACTAAACGGAATAGGTATTAGTTTGGTAATGGTTGGAGCAGCAAACTCGGATTCGGCA
AGAATCTCATTTTTTGGTAGTACGAAGGGGGAATTGGCCCAAAAATTGGATGGGGGTCAAGACGC
TGCTGTCGGGCGCCGGCGGCTGACTCAAGTGCCCCCCGAACCGCGCGAAATGGTCGCCTATTACA
CGGCTCACTAACTCTGCCTGGGGTGTGGGTACCTATTATTCTTCGGGTAATGTTGCCGCGTATTC
CCAGACTATAGAATAGAGTCTGTCTTTCTCCTTTATCGAGGAGAATTTAAAGGAGCGTTCAGCAA
CTCTCTTTCCTTATAGTCAAGAGAGTTGCTCCGCTCCTCTCTTTC
Right flanking sequence: Indices 149087 -- 149586
GTTAGCGCAACGGCTTTCGCGCTAGTGCGCTCATCCGCTGCTTCTTGCTTTAGGCTTTCGCGCTA
GTGCGCTCACCCCTTGCTTCTTTAAAGGCAACGGCTTTCGCGCTAGTGCGCTCACCCCTTGCTTC
TTGCTTTAGGCTTTCGCGCTAGCGCACTCAATCGTTGCTTGGTGCGCAATGGCTTTCTTAGTTAG
CGCTTACCCCTTGCTTGGTTAGTAAAGGCGAGCGGCTTTCCGCTCCTCCTTTCTTTAATTCACAG
GCACAGGAGGTCAAATTCCGATTGTTGTGAAAGTTACTGAATGAATCTATTTCATTCTAATTCGA
TCTAAGAAGAAAAAAATCACGCTCTGTAGGATTTGAACCTACGACATCGGGTTTTGGAGACCCAC
GTTCTACCGAACTGAACTAAGAGCGCTTTCTTATCACAGTAGATACGACTGTAAAGAAAAAGGAT
TCCCCCAATACATCTTGCATGCATATAGTCTCATAAAATGAAAAT
Found at i:149155 original size:41 final size:41
Alignment explanation
Indices: 149098--149238 Score: 180
Period size: 41 Copynumber: 3.3 Consensus size: 41
149088 TTAGCGCAAC
*
149098 GGCTTTCGCGCTAGTGCGCTCATCCGC-TGCTTCTTGCTTTA
1 GGCTTTCGCGCTAGTGCGCTCA-CCCCTTGCTTCTTGCTTTA
*
149139 GGCTTTCGCGCTAGTGCGCTCACCCCTTGCTTCTTTAAAGGC--AA
1 GGCTTTCGCGCTAGTGCGCTCACCCCTTGCTTC-TT----GCTTTA
149183 CGGCTTTCGCGCTAGTGCGCTCACCCCTTGCTTCTTGCTTTA
1 -GGCTTTCGCGCTAGTGCGCTCACCCCTTGCTTCTTGCTTTA
149225 GGCTTTCGCGCTAG
1 GGCTTTCGCGCTAG
149239 CGCACTCAAT
Statistics
Matches: 88, Mismatches: 3, Indels: 18
0.81 0.03 0.17
Matches are distributed among these distances:
40 5 0.06
41 42 0.48
42 3 0.03
44 3 0.03
45 33 0.38
46 2 0.02
ACGTcount: A:0.10, C:0.33, G:0.24, T:0.33
Consensus pattern (41 bp):
GGCTTTCGCGCTAGTGCGCTCACCCCTTGCTTCTTGCTTTA
Left flanking sequence: Indices 148598 -- 149097
ATTGATCCGCTACGGGATTAACATTATACGCAACATAAGCACCTGAAGTACTAAACGGAATAGGT
ATTAGTTTGGTAATGGTTGGAGCAGCAAACTCGGATTCGGCAAGAATCTCATTTTTTGGTAGTAC
GAAGGGGGAATTGGCCCAAAAATTGGATGGGGGTCAAGACGCTGCTGTCGGGCGCCGGCGGCTGA
CTCAAGTGCCCCCCGAACCGCGCGAAATGGTCGCCTATTACACGGCTCACTAACTCTGCCTGGGG
TGTGGGTACCTATTATTCTTCGGGTAATGTTGCCGCGTATTCCCAGACTATAGAATAGAGTCTGT
CTTTCTCCTTTATCGAGGAGAATTTAAAGGAGCGTTCAGCAACTCTCTTTCCTTATAGTCAAGAG
AGTTGCTCCGCTCCTCTCTTTCCAGCAAGAAAAGGGATGCGCAGCAAGAAAACGTATGCGCAGCA
AGAAAACGTATGCGCAGCAAGAAAACGTATGCGCGTTAGCGCAAC
Right flanking sequence: Indices 149239 -- 149738
CGCACTCAATCGTTGCTTGGTGCGCAATGGCTTTCTTAGTTAGCGCTTACCCCTTGCTTGGTTAG
TAAAGGCGAGCGGCTTTCCGCTCCTCCTTTCTTTAATTCACAGGCACAGGAGGTCAAATTCCGAT
TGTTGTGAAAGTTACTGAATGAATCTATTTCATTCTAATTCGATCTAAGAAGAAAAAAATCACGC
TCTGTAGGATTTGAACCTACGACATCGGGTTTTGGAGACCCACGTTCTACCGAACTGAACTAAGA
GCGCTTTCTTATCACAGTAGATACGACTGTAAAGAAAAAGGATTCCCCCAATACATCTTGCATGC
ATATAGTCTCATAAAATGAAAATCTGTATGTCCAATTTGAATCGATCTCAATGGATCCCTCGTTA
CTGCCCAGAGGAGAAGAATAGGTAGGGATGACAGGATTTGAACCCGTGACATTTTTTACCCAAAA
CAAAGGCGCTACCTGCGCTACATCCCTTTCAATTGGTCTACAACA
Found at i:149255 original size:41 final size:41
Alignment explanation
Indices: 149098--149256 Score: 162
Period size: 41 Copynumber: 3.8 Consensus size: 41
149088 TTAGCGCAAC
*
149098 GGCTTTCGCGCTAGTGCGCTCATCCGC-TGCTTCTTGCTTTA
1 GGCTTTCGCGCTAGTGCGCTCAACC-CTTGCTTCTTGCTTTA
* *
149139 GGCTTTCGCGCTAGTGCGCTCACCCCTTGCTTCTTTAAAGGC--AA
1 GGCTTTCGCGCTAGTGCGCTCAACCCTTGCTTC-TT----GCTTTA
*
149183 CGGCTTTCGCGCTAGTGCGCTCACCCCTTGCTTCTTGCTTTA
1 -GGCTTTCGCGCTAGTGCGCTCAACCCTTGCTTCTTGCTTTA
* * * *
149225 GGCTTTCGCGCTAGCGCACTCAATCGTTGCTT
1 GGCTTTCGCGCTAGTGCGCTCAACCCTTGCTT
149257 GGTGCGCAAT
Statistics
Matches: 101, Mismatches: 8, Indels: 18
0.80 0.06 0.14
Matches are distributed among these distances:
40 3 0.03
41 57 0.56
42 3 0.03
44 3 0.03
45 33 0.33
46 2 0.02
ACGTcount: A:0.11, C:0.33, G:0.23, T:0.33
Consensus pattern (41 bp):
GGCTTTCGCGCTAGTGCGCTCAACCCTTGCTTCTTGCTTTA
Left flanking sequence: Indices 148598 -- 149097
ATTGATCCGCTACGGGATTAACATTATACGCAACATAAGCACCTGAAGTACTAAACGGAATAGGT
ATTAGTTTGGTAATGGTTGGAGCAGCAAACTCGGATTCGGCAAGAATCTCATTTTTTGGTAGTAC
GAAGGGGGAATTGGCCCAAAAATTGGATGGGGGTCAAGACGCTGCTGTCGGGCGCCGGCGGCTGA
CTCAAGTGCCCCCCGAACCGCGCGAAATGGTCGCCTATTACACGGCTCACTAACTCTGCCTGGGG
TGTGGGTACCTATTATTCTTCGGGTAATGTTGCCGCGTATTCCCAGACTATAGAATAGAGTCTGT
CTTTCTCCTTTATCGAGGAGAATTTAAAGGAGCGTTCAGCAACTCTCTTTCCTTATAGTCAAGAG
AGTTGCTCCGCTCCTCTCTTTCCAGCAAGAAAAGGGATGCGCAGCAAGAAAACGTATGCGCAGCA
AGAAAACGTATGCGCAGCAAGAAAACGTATGCGCGTTAGCGCAAC
Right flanking sequence: Indices 149257 -- 149756
GGTGCGCAATGGCTTTCTTAGTTAGCGCTTACCCCTTGCTTGGTTAGTAAAGGCGAGCGGCTTTC
CGCTCCTCCTTTCTTTAATTCACAGGCACAGGAGGTCAAATTCCGATTGTTGTGAAAGTTACTGA
ATGAATCTATTTCATTCTAATTCGATCTAAGAAGAAAAAAATCACGCTCTGTAGGATTTGAACCT
ACGACATCGGGTTTTGGAGACCCACGTTCTACCGAACTGAACTAAGAGCGCTTTCTTATCACAGT
AGATACGACTGTAAAGAAAAAGGATTCCCCCAATACATCTTGCATGCATATAGTCTCATAAAATG
AAAATCTGTATGTCCAATTTGAATCGATCTCAATGGATCCCTCGTTACTGCCCAGAGGAGAAGAA
TAGGTAGGGATGACAGGATTTGAACCCGTGACATTTTTTACCCAAAACAAAGGCGCTACCTGCGC
TACATCCCTTTCAATTGGTCTACAACAGTGTCATTGTAGAGAATC
Found at i:149255 original size:86 final size:86
Alignment explanation
Indices: 149093--149256 Score: 258
Period size: 86 Copynumber: 1.9 Consensus size: 86
149083 GCGCGTTAGC
* * *
149093 GCAACGGCTTTCGCGCTAGTGCGCTCATCCGCTGCTTCTTGCTTTAGGCTTTCGCGCTAGTGCGC
1 GCAACGGCTTTCGCGCTAGTGCGCTCATCCCCTGCTTCTTGCTTTAGGCTTTCGCGCTAGCGCAC
*
149158 TCACCCCTTGCTTCTTTAAAG
66 TCAACCCTTGCTTCTTTAAAG
149179 GCAACGGCTTTCGCGCTAGTGCGCTCA-CCCCTTGCTTCTTGCTTTAGGCTTTCGCGCTAGCGCA
1 GCAACGGCTTTCGCGCTAGTGCGCTCATCCCC-TGCTTCTTGCTTTAGGCTTTCGCGCTAGCGCA
* *
149243 CTCAATCGTTGCTT
65 CTCAACCCTTGCTT
149257 GGTGCGCAAT
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
85 3 0.04
86 68 0.96
ACGTcount: A:0.12, C:0.33, G:0.23, T:0.32
Consensus pattern (86 bp):
GCAACGGCTTTCGCGCTAGTGCGCTCATCCCCTGCTTCTTGCTTTAGGCTTTCGCGCTAGCGCAC
TCAACCCTTGCTTCTTTAAAG
Left flanking sequence: Indices 148593 -- 149092
TTGGAATTGATCCGCTACGGGATTAACATTATACGCAACATAAGCACCTGAAGTACTAAACGGAA
TAGGTATTAGTTTGGTAATGGTTGGAGCAGCAAACTCGGATTCGGCAAGAATCTCATTTTTTGGT
AGTACGAAGGGGGAATTGGCCCAAAAATTGGATGGGGGTCAAGACGCTGCTGTCGGGCGCCGGCG
GCTGACTCAAGTGCCCCCCGAACCGCGCGAAATGGTCGCCTATTACACGGCTCACTAACTCTGCC
TGGGGTGTGGGTACCTATTATTCTTCGGGTAATGTTGCCGCGTATTCCCAGACTATAGAATAGAG
TCTGTCTTTCTCCTTTATCGAGGAGAATTTAAAGGAGCGTTCAGCAACTCTCTTTCCTTATAGTC
AAGAGAGTTGCTCCGCTCCTCTCTTTCCAGCAAGAAAAGGGATGCGCAGCAAGAAAACGTATGCG
CAGCAAGAAAACGTATGCGCAGCAAGAAAACGTATGCGCGTTAGC
Right flanking sequence: Indices 149257 -- 149756
GGTGCGCAATGGCTTTCTTAGTTAGCGCTTACCCCTTGCTTGGTTAGTAAAGGCGAGCGGCTTTC
CGCTCCTCCTTTCTTTAATTCACAGGCACAGGAGGTCAAATTCCGATTGTTGTGAAAGTTACTGA
ATGAATCTATTTCATTCTAATTCGATCTAAGAAGAAAAAAATCACGCTCTGTAGGATTTGAACCT
ACGACATCGGGTTTTGGAGACCCACGTTCTACCGAACTGAACTAAGAGCGCTTTCTTATCACAGT
AGATACGACTGTAAAGAAAAAGGATTCCCCCAATACATCTTGCATGCATATAGTCTCATAAAATG
AAAATCTGTATGTCCAATTTGAATCGATCTCAATGGATCCCTCGTTACTGCCCAGAGGAGAAGAA
TAGGTAGGGATGACAGGATTTGAACCCGTGACATTTTTTACCCAAAACAAAGGCGCTACCTGCGC
TACATCCCTTTCAATTGGTCTACAACAGTGTCATTGTAGAGAATC
Found at i:151707 original size:37 final size:37
Alignment explanation
Indices: 151666--151801 Score: 141
Period size: 37 Copynumber: 3.6 Consensus size: 37
151656 GGTGAGTGCG
151666 CTAGCGCGAAAGCCGTTGCGCAAGAAGCAAGGGCGCA
1 CTAGCGCGAAAGCCGTTGCGCAAGAAGCAAGGGCGCA
* * *
151703 CTAGCGCGAAAGCCGTTGC-CTTTACAA-CAGGGGTGAGCGCA
1 CTAGCGCGAAAGCCGTTGCGC--AAGAAGCA--AG-G-GCGCA
* * * *
151744 CTAGCGCGAAAGCCGTTGCGCAAGACGGATGAGCGCA
1 CTAGCGCGAAAGCCGTTGCGCAAGAAGCAAGGGCGCA
151781 CTAGCGCGAAAGCCGTTGCGC
1 CTAGCGCGAAAGCCGTTGCGC
151802 TAACGCGCAT
Statistics
Matches: 82, Mismatches: 9, Indels: 16
0.77 0.08 0.15
Matches are distributed among these distances:
36 1 0.01
37 47 0.57
38 3 0.04
39 2 0.02
40 3 0.04
41 25 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.34, T:0.12
Consensus pattern (37 bp):
CTAGCGCGAAAGCCGTTGCGCAAGAAGCAAGGGCGCA
Left flanking sequence: Indices 151166 -- 151665
TATCCATAAAGAGAAAGAAAGTTTTCTTCTAGTTCCGCTTCCGCTTCTTGCTCTTCCAATTCAGA
AAGACTTGTCGGAAATCGCCGGTTGGGTTGGTCCGACCAAGAAAGGCATGGGACTTTTGGGCATT
GCTTGGGTCGAGCTAGGCTACCTAGTGATTTACAAGCACCCTCACTGCACACTTTCTATATATCT
GTCTCCATCCAATCAAAGACGTCCATGCCATAGAGAATCAGGCTCGGCAAAAACGAGACTAGGGA
CCATGCTCCCCGCTTTCTTCCTGTGGTTACTATTAGAACACAAGCCAAGGAACTAAAAACCACAA
CACAAGCACCCTTTATTTAATTTAAATTTAATTTACTAGTTTTGGAGTTTTCGCCCCGCGAAGGT
AAATAGTAAAAAAAGTTCCCCGTAGAACGCGAGCGTTGAGGCTTTCGTCGAAACAAAGAGAGAGG
AGCGAAAAGCCACTTGCTTGATTAACCAAGCAAGGGGTGAGTGCG
Right flanking sequence: Indices 151802 -- 152301
TAACGCGCATACGTTTTCTTGCTGCGCTTTAGTTTTCTTGCTGCGCATACTCTTGCTGGAAAGGG
GCATGTATCCTTTTTTTGTAAAGAAAGAGGGCTACTTCACGAGCCGCTACTAATAATTGAAAGGG
TTCACAGCGAGTTCAGTCTATAGTGACAAAGGGAACGTTTCCGCCGGAGGGGTTTGTCTCCATGG
AAAAAGTATTCACTACTGCTTACAGCGCCTTCATTCACTCGTCTTGCTACTTCGGAACAGTTCAG
CGGACACGTGGAGTCGAACGTCTCTCTACAATGTTGCGTAGGTAGACTGATTATTGTAGGTGACT
GTCTCTAGTGGTTTAGAAAGAGTTCTGTTGCTACCAACTTCTTTCTTTGTAGTCTAGTAGATCTA
CATGCTCTAGTGGATCTAAAGTAGGTTTATGTTCAGCAACAGAAAGAGGTGAGGTTCTGCTTTCT
TACCTGAGAATATTTACAAGGGGGAAGCCTCGAAAGGCATACGAG
Found at i:151782 original size:78 final size:78
Alignment explanation
Indices: 151653--151799 Score: 240
Period size: 78 Copynumber: 1.9 Consensus size: 78
151643 TAACCAAGCA
* * *
151653 AGGGGTGAGTGCGCTAGCGCGAAAGCCGTTGCGCAAGAAGCAAGGGCGCACTAGCGCGAAAGCCG
1 AGGGGTGAGCGCACTAGCGCGAAAGCCGTTGCGCAAGAAGCAAGAGCGCACTAGCGCGAAAGCCG
151718 TTGCCTTTACAAC
66 TTGCCTTTACAAC
* * *
151731 AGGGGTGAGCGCACTAGCGCGAAAGCCGTTGCGCAAGACGGATGAGCGCACTAGCGCGAAAGCCG
1 AGGGGTGAGCGCACTAGCGCGAAAGCCGTTGCGCAAGAAGCAAGAGCGCACTAGCGCGAAAGCCG
151796 TTGC
66 TTGC
151800 GCTAACGCGC
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
78 63 1.00
ACGTcount: A:0.25, C:0.26, G:0.36, T:0.13
Consensus pattern (78 bp):
AGGGGTGAGCGCACTAGCGCGAAAGCCGTTGCGCAAGAAGCAAGAGCGCACTAGCGCGAAAGCCG
TTGCCTTTACAAC
Left flanking sequence: Indices 151153 -- 151652
AAAATGAATTGGTTATCCATAAAGAGAAAGAAAGTTTTCTTCTAGTTCCGCTTCCGCTTCTTGCT
CTTCCAATTCAGAAAGACTTGTCGGAAATCGCCGGTTGGGTTGGTCCGACCAAGAAAGGCATGGG
ACTTTTGGGCATTGCTTGGGTCGAGCTAGGCTACCTAGTGATTTACAAGCACCCTCACTGCACAC
TTTCTATATATCTGTCTCCATCCAATCAAAGACGTCCATGCCATAGAGAATCAGGCTCGGCAAAA
ACGAGACTAGGGACCATGCTCCCCGCTTTCTTCCTGTGGTTACTATTAGAACACAAGCCAAGGAA
CTAAAAACCACAACACAAGCACCCTTTATTTAATTTAAATTTAATTTACTAGTTTTGGAGTTTTC
GCCCCGCGAAGGTAAATAGTAAAAAAAGTTCCCCGTAGAACGCGAGCGTTGAGGCTTTCGTCGAA
ACAAAGAGAGAGGAGCGAAAAGCCACTTGCTTGATTAACCAAGCA
Right flanking sequence: Indices 151800 -- 152299
GCTAACGCGCATACGTTTTCTTGCTGCGCTTTAGTTTTCTTGCTGCGCATACTCTTGCTGGAAAG
GGGCATGTATCCTTTTTTTGTAAAGAAAGAGGGCTACTTCACGAGCCGCTACTAATAATTGAAAG
GGTTCACAGCGAGTTCAGTCTATAGTGACAAAGGGAACGTTTCCGCCGGAGGGGTTTGTCTCCAT
GGAAAAAGTATTCACTACTGCTTACAGCGCCTTCATTCACTCGTCTTGCTACTTCGGAACAGTTC
AGCGGACACGTGGAGTCGAACGTCTCTCTACAATGTTGCGTAGGTAGACTGATTATTGTAGGTGA
CTGTCTCTAGTGGTTTAGAAAGAGTTCTGTTGCTACCAACTTCTTTCTTTGTAGTCTAGTAGATC
TACATGCTCTAGTGGATCTAAAGTAGGTTTATGTTCAGCAACAGAAAGAGGTGAGGTTCTGCTTT
CTTACCTGAGAATATTTACAAGGGGGAAGCCTCGAAAGGCATACG
Found at i:151828 original size:19 final size:19
Alignment explanation
Indices: 151806--151851 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
151796 TTGCGCTAAC
151806 GCGCATACGTTTTCTTGCT
1 GCGCATACGTTTTCTTGCT
*
151825 GCGCTTTA-GTTTTCTTGCT
1 GCGC-ATACGTTTTCTTGCT
151844 GCGCATAC
1 GCGCATAC
151852 TCTTGCTGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 2 0.09
19 19 0.83
20 2 0.09
ACGTcount: A:0.11, C:0.26, G:0.22, T:0.41
Consensus pattern (19 bp):
GCGCATACGTTTTCTTGCT
Left flanking sequence: Indices 151306 -- 151805
AGCTAGGCTACCTAGTGATTTACAAGCACCCTCACTGCACACTTTCTATATATCTGTCTCCATCC
AATCAAAGACGTCCATGCCATAGAGAATCAGGCTCGGCAAAAACGAGACTAGGGACCATGCTCCC
CGCTTTCTTCCTGTGGTTACTATTAGAACACAAGCCAAGGAACTAAAAACCACAACACAAGCACC
CTTTATTTAATTTAAATTTAATTTACTAGTTTTGGAGTTTTCGCCCCGCGAAGGTAAATAGTAAA
AAAAGTTCCCCGTAGAACGCGAGCGTTGAGGCTTTCGTCGAAACAAAGAGAGAGGAGCGAAAAGC
CACTTGCTTGATTAACCAAGCAAGGGGTGAGTGCGCTAGCGCGAAAGCCGTTGCGCAAGAAGCAA
GGGCGCACTAGCGCGAAAGCCGTTGCCTTTACAACAGGGGTGAGCGCACTAGCGCGAAAGCCGTT
GCGCAAGACGGATGAGCGCACTAGCGCGAAAGCCGTTGCGCTAAC
Right flanking sequence: Indices 151852 -- 152351
TCTTGCTGGAAAGGGGCATGTATCCTTTTTTTGTAAAGAAAGAGGGCTACTTCACGAGCCGCTAC
TAATAATTGAAAGGGTTCACAGCGAGTTCAGTCTATAGTGACAAAGGGAACGTTTCCGCCGGAGG
GGTTTGTCTCCATGGAAAAAGTATTCACTACTGCTTACAGCGCCTTCATTCACTCGTCTTGCTAC
TTCGGAACAGTTCAGCGGACACGTGGAGTCGAACGTCTCTCTACAATGTTGCGTAGGTAGACTGA
TTATTGTAGGTGACTGTCTCTAGTGGTTTAGAAAGAGTTCTGTTGCTACCAACTTCTTTCTTTGT
AGTCTAGTAGATCTACATGCTCTAGTGGATCTAAAGTAGGTTTATGTTCAGCAACAGAAAGAGGT
GAGGTTCTGCTTTCTTACCTGAGAATATTTACAAGGGGGAAGCCTCGAAAGGCATACGAGTGCGC
CTCTCGTAGACGAATCCCGACTCAGTCCGCTCCTACTGCGCGGGA
Found at i:158062 original size:17 final size:17
Alignment explanation
Indices: 158040--158073 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
158030 CTGGATCAAG
158040 AAAAGAGAGATATCGAA
1 AAAAGAGAGATATCGAA
158057 AAAAGAGAGATATCGAA
1 AAAAGAGAGATATCGAA
158074 TACTTGAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.59, C:0.06, G:0.24, T:0.12
Consensus pattern (17 bp):
AAAAGAGAGATATCGAA
Left flanking sequence: Indices 157540 -- 158039
CAAACTTCAAGTCTTGATTGAAACTGAAAGTCAAGATTTGATATTTAGTTATATAGTAGTAGAAG
ATAGTAAGCTCTCTAGCTCATGAGGAAGATTAACAGAGTTGATTCCGCCCAATAGCGCTTTGCCT
AGAGTAGAAGCCGGTCCCCGGACGTTAACGGCCAACTTCCTCATTCGCTAGATGCTTGCTTCATA
TGCTTAACACAAGCAAGGGGAAGAAAGTGGTAATAGTGATTGATAGTTACATCAAGATTCATTCA
AGTTACAGAAAGGAAAGCAAGTCACAGGGACTGGACTGGTTGACATTGAATGGGACTAGAGTAGG
ATAGCAGAATGAACTGAACACTTTTACCGCCATAACACATTAAAGCACTCTCTCGCTCAGGAAGA
GGTACCCATTAGATGGAACGGCGAAAGCAAAGCTAACCGAAGTAGTAAGTTTCGCAGCGGAAGTC
ATTCTAAGAGGTAGTTTAGCTCAAAGCATTCCTTGCTGGATCAAG
Right flanking sequence: Indices 158074 -- 158573
TACTTGAACAACTATCGCATTCACTCACTTCATTAAGGTGTAGTTCTTCGGCGCCTGACCGTTGA
CCGTTTCGCTCCTTCGCTTCGCTCGTCTGCTTCTTCGTTTGGAGCATTTCATTTAAGGATTTGTT
GATGAGAAGGGCTATTCCATTCCAAGGCTCAGGAGGAATAATGCATCTGTAGATTTCACTTAATG
GAGAATTCCTAATACTTATATATATATATCAGTAGCGCTATAATATGATATGACCCCGGGCAAGG
ACCAGAGCTCCTATTGACAGATGGCTTCGCGGGCGAGAACCTTACCCCTTTAGGCGGGTTACCCA
CTCCGATGCCATGAACACAAGAGAAAGAAGCTGGCGCAGTGACTCAATCCTCCGATTAAGCTACT
TCTGGATATTAAGATTTTAGCGGGAAAAGGATAATAATCTGTATAGAATTCGAATTGCTAGAGGC
TTCCTGCGGTTGTAAACGGAAGAAAAAAGGCCGCTGCAGCCTGTT
Found at i:185541 original size:19 final size:19
Alignment explanation
Indices: 185517--185577 Score: 88
Period size: 19 Copynumber: 3.2 Consensus size: 19
185507 GCAAGAGTAT
185517 GCGCAGCAAGAAAAC-TAAA
1 GCGCAGCAAGAAAACGT-AA
*
185536 GCGCAGCAAGAAAACGTAT
1 GCGCAGCAAGAAAACGTAA
*
185555 GCGCAGCAAGAAAACGTAT
1 GCGCAGCAAGAAAACGTAA
185574 GCGC
1 GCGC
185578 GTTAGCGCAA
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
19 39 0.98
20 1 0.03
ACGTcount: A:0.43, C:0.23, G:0.26, T:0.08
Consensus pattern (19 bp):
GCGCAGCAAGAAAACGTAA
Left flanking sequence: Indices 185017 -- 185516
GAGAATGCCAGTATATCAGTTCATCTTCATCAAAGGCCAAGATCTCCATGAATTCTATTATTTTG
CCTCTCTTTGCTTCTGAGGCAGTTTCAAGTTTAAGCCGATCCTCGAGGTCCAGTAAAAGGTCACT
CCTCATCCCGATCTTATTAAAGGAGGAAGTAAACAGATCAAGGTTTCTACGTACTTCCGTTATGG
AGGGTGCGGGCAGGGGGGACGGCGGGGAGGCCGGCTCCATGACCCCGGTTGGTTGCCGAAGATGA
CCCCTCGCCTTGGTCTCCAAATAAGTTTTTCTAATAGTAAAAAGCACCTTAAAACCACGAATAAG
TTGGAGATGAGGGTGATGAGTTGGGATCCTTTAAGGCGGGGGCACGGGGTTATGGTCTTGTTACT
TTATGTTTCGGAGTCAATTGATCCCTCGATCAAGTCCTAACTAGAAATATCTTAAGAGAAGAAGA
GAAATCCTTTGGATTCGAGGCTTCACTCCTTTCCAGCAAGAGTAT
Right flanking sequence: Indices 185578 -- 186077
GTTAGCGCAACGGCTTTCGCGCTAGTGCGCTCATCCGCTGCTTCTTGCTTTAGGCTTTCGCGCTA
GTGCGCTCACCCCTTGCTTAAAGTAAAGGCAACGGCTTTCGCGCTAGCGCACTCACCCCTTGCTT
GGTTAATCAAGCAAGTTGCTTTCAGCTCCTCTCCAAATAATCAAGCAAGTGGCTTTCAACCCCTC
TCCAACTTTATAATCAAGTACGGAGTTCTTCTGCTCTAATCTCCGAAATCGAAGGTCAGCTGACT
GAGGAGTTAGTATTGATTCATGCAAAGATGCTCCTTTGAAGCTGGAGTAAGGAATTGTCCACCTC
ATCACCTTTAATAAAGCGAGCAGTGGCTCTGTTGTTTTGCACGCCTACAGAGAGAGACTCCAAAA
GTACCGACGCTCAATCGAAAGAAAGAGCAATCAACTATATGCTTAACTCATGCCCCAGGAATCCC
TAGACACAGAGAGAGGGTACGAGCTAATCTTTTACTAGAGGGAAA
Found at i:185754 original size:34 final size:34
Alignment explanation
Indices: 185711--185777 Score: 107
Period size: 34 Copynumber: 2.0 Consensus size: 34
185701 CTTGCTTGGT
* * *
185711 TAATCAAGCAAGTTGCTTTCAGCTCCTCTCCAAA
1 TAATCAAGCAAGTGGCTTTCAACCCCTCTCCAAA
185745 TAATCAAGCAAGTGGCTTTCAACCCCTCTCCAA
1 TAATCAAGCAAGTGGCTTTCAACCCCTCTCCAA
185778 CTTTATAATC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.30, C:0.31, G:0.12, T:0.27
Consensus pattern (34 bp):
TAATCAAGCAAGTGGCTTTCAACCCCTCTCCAAA
Left flanking sequence: Indices 185211 -- 185710
GAGGGTGCGGGCAGGGGGGACGGCGGGGAGGCCGGCTCCATGACCCCGGTTGGTTGCCGAAGATG
ACCCCTCGCCTTGGTCTCCAAATAAGTTTTTCTAATAGTAAAAAGCACCTTAAAACCACGAATAA
GTTGGAGATGAGGGTGATGAGTTGGGATCCTTTAAGGCGGGGGCACGGGGTTATGGTCTTGTTAC
TTTATGTTTCGGAGTCAATTGATCCCTCGATCAAGTCCTAACTAGAAATATCTTAAGAGAAGAAG
AGAAATCCTTTGGATTCGAGGCTTCACTCCTTTCCAGCAAGAGTATGCGCAGCAAGAAAACTAAA
GCGCAGCAAGAAAACGTATGCGCAGCAAGAAAACGTATGCGCGTTAGCGCAACGGCTTTCGCGCT
AGTGCGCTCATCCGCTGCTTCTTGCTTTAGGCTTTCGCGCTAGTGCGCTCACCCCTTGCTTAAAG
TAAAGGCAACGGCTTTCGCGCTAGCGCACTCACCCCTTGCTTGGT
Right flanking sequence: Indices 185778 -- 186277
CTTTATAATCAAGTACGGAGTTCTTCTGCTCTAATCTCCGAAATCGAAGGTCAGCTGACTGAGGA
GTTAGTATTGATTCATGCAAAGATGCTCCTTTGAAGCTGGAGTAAGGAATTGTCCACCTCATCAC
CTTTAATAAAGCGAGCAGTGGCTCTGTTGTTTTGCACGCCTACAGAGAGAGACTCCAAAAGTACC
GACGCTCAATCGAAAGAAAGAGCAATCAACTATATGCTTAACTCATGCCCCAGGAATCCCTAGAC
ACAGAGAGAGGGTACGAGCTAATCTTTTACTAGAGGGAAAGCTGGCGAAAAGCATAGAGCGTGCG
TGCTACGCTCTCGCCCTCCTTCCATCCGCGAAGCTGAGGCGGGAGAAAAAGCCTAATTCCCCGGT
GTCATAGGTTACCTTTCTATCTTCCTCCCCCGTGACGTTCCCAAAGCGATCGCTATCCTTTTCTT
GCTTTCTTCTTGTCTTGCATTTTTTTAGAACGGCTTTATATCTGG
Found at i:192657 original size:19 final size:19
Alignment explanation
Indices: 192633--192683 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 19
192623 AAAACCCAGC
192633 AAGAAAACGGATGCGCAGA
1 AAGAAAACGGATGCGCAGA
* *
192652 AAGAAAA--G-CGCGCAGC
1 AAGAAAACGGATGCGCAGA
*
192668 AAGAAAACGTATGCGC
1 AAGAAAACGGATGCGC
192684 GTTAGCGCAA
Statistics
Matches: 25, Mismatches: 4, Indels: 6
0.71 0.11 0.17
Matches are distributed among these distances:
16 13 0.52
17 1 0.04
19 11 0.44
ACGTcount: A:0.45, C:0.20, G:0.29, T:0.06
Consensus pattern (19 bp):
AAGAAAACGGATGCGCAGA
Left flanking sequence: Indices 192133 -- 192632
ACTGAGTTCTGAACGAATTAGCTCCTTGGTAATGGCTTAATCTATAGATAGAAAGCCCTATGATG
GGAAACTACCACGTTAGGTTTGGAGAGAGATGGGACCGGTTATATAATAGGGGAAGCAGATGCAA
GCTTTTTCTTTCAATAGCCGGCCAAATGACTACAGGATCATCGGTCTACTCTACCTCAATTCACC
ATTTCGAACCTTATACAGAAGGTTTTTCCGTACCAGCTCCTTCTACCTATACCGCAGTTGAAGCA
CCTAAAGGAGAATTTGGTGTCTTTCTGGTCAGTAATGGAAGCAATCGTCCCTACCGTCGTAAAAT
AAGAGCACCTGGCTTTGCCCATTCACAAGGACTCGATTCTATGTCCAAACATCACATGCCAGCAG
ATGTGGTCACCATCATAGGTACTCAAGATATTGTGTCTGGAGAGGTGGATAGATAGGACTACTAG
TTGCTCGATCAGGACCCTAGCTTTATTGCGAGCCAAAAACCCAGC
Right flanking sequence: Indices 192684 -- 193183
GTTAGCGCAACGGCTTTCGCGCTAGTGCGCTCATCCCTTGCTTCTTGCGCAACGGCTTTCGCGCT
AGGGCGCTCACCCCTTGCTTCTTGCTTTAGGCTTTCGCGCTAGCGCACTCACCCCTTGCTTGTTC
CCCCTTTCTTTATTTAAGGAGATTCTATCCAATTATCAGCCCCGATGCGAAAAGGAGTAAAGAAA
GAAGAGTTGAAGACGGCTTGGCTTAATAGTAAAAGAAGAGAGAACCCCCTCATCTCGTGGCTAGG
AACATCTATGTAGATGGGATTGGATTCATAGTGCCAGTTAGGGGTAGGTATAACCCTTCATTCAT
CTTCTTCGATCTTCCTTGGAATATCCATCATCTTGGTCTCGACCTTGTTGAGCTCTTCCTGATCG
AAAGTTCCTATTTTGCTGCCTCTTCGATCGTCTCCGACTCCCTAAAAAAGAAGATTGGTGACCTA
GATGGTCAGGGTCTTTCCTTACCTTAGCTGAGCCTTATGTCCCTT
Found at i:192800 original size:41 final size:42
Alignment explanation
Indices: 192688--192809 Score: 174
Period size: 42 Copynumber: 2.9 Consensus size: 42
192678 ATGCGCGTTA
* *
192688 GCGCAACGGCTTTCGCGCTAGTGCGCTCATCCCTTGCTTCTT
1 GCGCAACGGCTTTCGCGCTAGCGCGCTCACCCCTTGCTTCTT
*
192730 GCGCAACGGCTTTCGCGCTAGGGCGCTCACCCCTTGCTTCTT
1 GCGCAACGGCTTTCGCGCTAGCGCGCTCACCCCTTGCTTCTT
*** *
192772 GCTTTA-GGCTTTCGCGCTAGCGCACTCACCCCTTGCTT
1 GCGCAACGGCTTTCGCGCTAGCGCGCTCACCCCTTGCTT
192810 GTTCCCCCTT
Statistics
Matches: 73, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
41 30 0.41
42 43 0.59
ACGTcount: A:0.10, C:0.37, G:0.24, T:0.30
Consensus pattern (42 bp):
GCGCAACGGCTTTCGCGCTAGCGCGCTCACCCCTTGCTTCTT
Left flanking sequence: Indices 192188 -- 192687
CCCTATGATGGGAAACTACCACGTTAGGTTTGGAGAGAGATGGGACCGGTTATATAATAGGGGAA
GCAGATGCAAGCTTTTTCTTTCAATAGCCGGCCAAATGACTACAGGATCATCGGTCTACTCTACC
TCAATTCACCATTTCGAACCTTATACAGAAGGTTTTTCCGTACCAGCTCCTTCTACCTATACCGC
AGTTGAAGCACCTAAAGGAGAATTTGGTGTCTTTCTGGTCAGTAATGGAAGCAATCGTCCCTACC
GTCGTAAAATAAGAGCACCTGGCTTTGCCCATTCACAAGGACTCGATTCTATGTCCAAACATCAC
ATGCCAGCAGATGTGGTCACCATCATAGGTACTCAAGATATTGTGTCTGGAGAGGTGGATAGATA
GGACTACTAGTTGCTCGATCAGGACCCTAGCTTTATTGCGAGCCAAAAACCCAGCAAGAAAACGG
ATGCGCAGAAAGAAAAGCGCGCAGCAAGAAAACGTATGCGCGTTA
Right flanking sequence: Indices 192810 -- 193309
GTTCCCCCTTTCTTTATTTAAGGAGATTCTATCCAATTATCAGCCCCGATGCGAAAAGGAGTAAA
GAAAGAAGAGTTGAAGACGGCTTGGCTTAATAGTAAAAGAAGAGAGAACCCCCTCATCTCGTGGC
TAGGAACATCTATGTAGATGGGATTGGATTCATAGTGCCAGTTAGGGGTAGGTATAACCCTTCAT
TCATCTTCTTCGATCTTCCTTGGAATATCCATCATCTTGGTCTCGACCTTGTTGAGCTCTTCCTG
ATCGAAAGTTCCTATTTTGCTGCCTCTTCGATCGTCTCCGACTCCCTAAAAAAGAAGATTGGTGA
CCTAGATGGTCAGGGTCTTTCCTTACCTTAGCTGAGCCTTATGTCCCTTCAACATTCCTATTCAT
CTTGCCTTGTCTTGGGCACCGCAGTGGACTGATTATCCTTACCTATATATAATATCTACTCTAAA
GATTAAGAGGATAGAGGGTCTCCCTTCCATAGATTCGATTGGGAT
Found at i:198277 original size:34 final size:29
Alignment explanation
Indices: 198188--198266 Score: 122
Period size: 29 Copynumber: 2.7 Consensus size: 29
198178 TGTAAGGAAA
*
198188 GAGAGGAGCGGAAAGCAACTCGACTATAAG
1 GAGAGGAGC-GAAAGCCACTCGACTATAAG
*
198218 GAGAGGAGCGAAGGCCACTCGACTATAAG
1 GAGAGGAGCGAAAGCCACTCGACTATAAG
198247 GAGAGGAGCGAAAAGCCACT
1 GAGAGGAGCG-AAAGCCACT
198267 TGCTTGACTA
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
29 28 0.62
30 17 0.38
ACGTcount: A:0.38, C:0.19, G:0.34, T:0.09
Consensus pattern (29 bp):
GAGAGGAGCGAAAGCCACTCGACTATAAG
Left flanking sequence: Indices 197688 -- 198187
TATTAGTATCTGGAACTCCTTATTGTTCTTCTTTCGTTGCTACGCTGTTCTAAGGACCAATTGCA
TCCGTTTTCTTGCTGCATCCGAGATTCCCCTGACTTGTTATTAGATAGGTACGCGCTGTCCGGGC
TTCTTTTATTCCCCTTGTTTGTTTTAATATGCTACATGCTTTAAGAGTTCTTTAAGAGAACTGTT
TTAACTATTCTCTTAAGTATTCCCTTAACTGTTGTTGTTAGAACAGCGAGAATGTCATGGGTATG
GCATTCAAGCGAATAGTTAGAACAGCTTGAATTCCTTGGGAAGGGATTCGAGCGAATAGGGGAGC
GGAGACAAGCTGAGCGAAGAGTGGAGAGGGGAGAGTCCCTATACGGAAATATGAAATCTAAGAAG
TCTGCGTAAGCTGAATCTTAGTTGTTTTCCCGTATGAAATGCCTGATATAAGACTGCTTGCCCTA
TTTGTATCCACGGGTAAGGTAAGGTTGAACGAGACTGTAAGGAAA
Right flanking sequence: Indices 198267 -- 198766
TGCTTGACTATGTAGGGTTCGACTTTTTCCATTATTCCAAATTAAAAAATAATCTAAAGAATTTC
TTTTTTCTGTCATTTTCCCGCTATATGGGACAGGCAAATGAGATTTAGAATTGCACCTTACGTAA
GGAAATAAGCTAGCTAACTTTTCCCGCTATATGGGACAGGCAAATGAGATTTAGAATTGCACCTT
ACGTAAGGAAAATGCTTTCTTACTTTTTGCCCCTATATGGGACAGGAACTATTTCAGGAAAGCTG
CTTAAACGTAACTGCTACTATAAACTATAAGTTAAGTTGCGTAGCAGTTCTAATTAAAGAACGGA
ACGGGGCGTAGCTGTTCTTCAAGGAAGTCTCATTGCGTAGCAGTTCTTCTTCTTTACAGGAAAGC
TGCTTTTCACCTCCTTTACTTATATAATAGAGTCAAGTGGCTCCCGCGCCTTTCCTTACAGGAAA
GCTGCTTAAAAGCGCCTCTCTTTCCAGCAAGAAAACGTATGCGCG
Found at i:198460 original size:71 final size:71
Alignment explanation
Indices: 198344--198507 Score: 260
Period size: 71 Copynumber: 2.3 Consensus size: 71
198334 TTTTCTGTCA
198344 TTTTCCCGCTATATGGGACAGGCAAATGAGATTTAGAATTGCACCTTACGTAAGGAAATAAGCTA
1 TTTTCCCGCTATATGGGACAGGCAAATGAGATTTAGAATTGCACCTTACGTAAGGAAA-AAGCTA
198409 GCTAAC-
65 GCTAACT
* **
198415 TTTTCCCGCTATATGGGACAGGCAAATGAGATTTAGAATTGCACCTTACGTAAGGAAAATGCTTT
1 TTTTCCCGCTATATGGGACAGGCAAATGAGATTTAGAATTGCACCTTACGTAAGGAAAAAGCTAG
*
198480 CTTACT
66 CTAACT
198486 TTTTGCCC-CTATATGGGACAGG
1 TTTT-CCCGCTATATGGGACAGG
198508 AACTATTTCA
Statistics
Matches: 87, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
70 8 0.09
71 76 0.87
72 3 0.03
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (71 bp):
TTTTCCCGCTATATGGGACAGGCAAATGAGATTTAGAATTGCACCTTACGTAAGGAAAAAGCTAG
CTAACT
Left flanking sequence: Indices 197844 -- 198343
ATATGCTACATGCTTTAAGAGTTCTTTAAGAGAACTGTTTTAACTATTCTCTTAAGTATTCCCTT
AACTGTTGTTGTTAGAACAGCGAGAATGTCATGGGTATGGCATTCAAGCGAATAGTTAGAACAGC
TTGAATTCCTTGGGAAGGGATTCGAGCGAATAGGGGAGCGGAGACAAGCTGAGCGAAGAGTGGAG
AGGGGAGAGTCCCTATACGGAAATATGAAATCTAAGAAGTCTGCGTAAGCTGAATCTTAGTTGTT
TTCCCGTATGAAATGCCTGATATAAGACTGCTTGCCCTATTTGTATCCACGGGTAAGGTAAGGTT
GAACGAGACTGTAAGGAAAGAGAGGAGCGGAAAGCAACTCGACTATAAGGAGAGGAGCGAAGGCC
ACTCGACTATAAGGAGAGGAGCGAAAAGCCACTTGCTTGACTATGTAGGGTTCGACTTTTTCCAT
TATTCCAAATTAAAAAATAATCTAAAGAATTTCTTTTTTCTGTCA
Right flanking sequence: Indices 198508 -- 199007
AACTATTTCAGGAAAGCTGCTTAAACGTAACTGCTACTATAAACTATAAGTTAAGTTGCGTAGCA
GTTCTAATTAAAGAACGGAACGGGGCGTAGCTGTTCTTCAAGGAAGTCTCATTGCGTAGCAGTTC
TTCTTCTTTACAGGAAAGCTGCTTTTCACCTCCTTTACTTATATAATAGAGTCAAGTGGCTCCCG
CGCCTTTCCTTACAGGAAAGCTGCTTAAAAGCGCCTCTCTTTCCAGCAAGAAAACGTATGCGCGT
TAGCGCAACGGCTTTCGCGCTAGTGCGCTCATCCGCTGCTTCTTGCTTTAGGCTTTCGCGCTAGT
GCGCTCATCCCTTGCTTCTTGCTTTAGGCTTTCTTAGTTAGCACTCACCCCTTGCTTGGTTAGTC
AAGAGAGTTGCTTTCAGCTCCTTTCCTTAGCAGTCAAGTGGCTCCGCTCCTCGTCATTTGATTTG
CATGGTTAGCTGCTGCTTGTGGCGCCGCTGATGAAGCCACATCCG
Found at i:198834 original size:41 final size:41
Alignment explanation
Indices: 198777--198865 Score: 162
Period size: 41 Copynumber: 2.2 Consensus size: 41
198767 TTAGCGCAAC
198777 GGCTTTCGCGCTAGTGCGCTCATCCGC-TGCTTCTTGCTTTA
1 GGCTTTCGCGCTAGTGCGCTCATCC-CTTGCTTCTTGCTTTA
198818 GGCTTTCGCGCTAGTGCGCTCATCCCTTGCTTCTTGCTTTA
1 GGCTTTCGCGCTAGTGCGCTCATCCCTTGCTTCTTGCTTTA
198859 GGCTTTC
1 GGCTTTC
198866 TTAGTTAGCA
Statistics
Matches: 47, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
40 1 0.02
41 46 0.98
ACGTcount: A:0.07, C:0.31, G:0.24, T:0.38
Consensus pattern (41 bp):
GGCTTTCGCGCTAGTGCGCTCATCCCTTGCTTCTTGCTTTA
Left flanking sequence: Indices 198277 -- 198776
TGTAGGGTTCGACTTTTTCCATTATTCCAAATTAAAAAATAATCTAAAGAATTTCTTTTTTCTGT
CATTTTCCCGCTATATGGGACAGGCAAATGAGATTTAGAATTGCACCTTACGTAAGGAAATAAGC
TAGCTAACTTTTCCCGCTATATGGGACAGGCAAATGAGATTTAGAATTGCACCTTACGTAAGGAA
AATGCTTTCTTACTTTTTGCCCCTATATGGGACAGGAACTATTTCAGGAAAGCTGCTTAAACGTA
ACTGCTACTATAAACTATAAGTTAAGTTGCGTAGCAGTTCTAATTAAAGAACGGAACGGGGCGTA
GCTGTTCTTCAAGGAAGTCTCATTGCGTAGCAGTTCTTCTTCTTTACAGGAAAGCTGCTTTTCAC
CTCCTTTACTTATATAATAGAGTCAAGTGGCTCCCGCGCCTTTCCTTACAGGAAAGCTGCTTAAA
AGCGCCTCTCTTTCCAGCAAGAAAACGTATGCGCGTTAGCGCAAC
Right flanking sequence: Indices 198866 -- 199365
TTAGTTAGCACTCACCCCTTGCTTGGTTAGTCAAGAGAGTTGCTTTCAGCTCCTTTCCTTAGCAG
TCAAGTGGCTCCGCTCCTCGTCATTTGATTTGCATGGTTAGCTGCTGCTTGTGGCGCCGCTGATG
AAGCCACATCCGGAAAGTTTGAAGCTAACTGCATGTCGAGCGCTTAAGCGGAGCTTGTGGTCACT
CGTTCCTCGCTTGTTCGAAAGAGCTTCAGATTGGATTCAACACTACATACGATATGTAATTCCGG
CCCTCACTAGCTCTTTGCTTGTACAAAGAGCATGCCCGAGGGGGCTACTACGCTCACCGCGCACT
TGCATTACCACCTGAGCTTCGCTACCGCTCCGCCCAGCTCCTACGCCTACCACGAACTTGAATCA
TCACATGGCTGCTAAAGCAAGCGTTGCTTCACACGGCCCTGAGGAAGCCAAAAGACCCTCTCACT
TCGTTCGAGCTTCCTTACATCCACCCTCTCCTTGATAGTATAGCG
Found at i:205184 original size:16 final size:16
Alignment explanation
Indices: 205163--205195 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
205153 ACGACACGAT
205163 ACTCAAATCTA-GATTC
1 ACTCAAAT-TATGATTC
205179 ACTCAAATTATGATTC
1 ACTCAAATTATGATTC
205195 A
1 A
205196 AGTGAAGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 2 0.12
16 14 0.88
ACGTcount: A:0.39, C:0.21, G:0.06, T:0.33
Consensus pattern (16 bp):
ACTCAAATTATGATTC
Left flanking sequence: Indices 204663 -- 205162
CGTAGAACAAAAATAAGTTTATTTGCATCAAGCTTTCGAGGGGCTCATTCAAGGCTTACTCGAAC
TATTACTCAACAGAAAATAAGAGCTTTAGTTTCGGCTCATCGGGATAGGGATAGGAAAAAGAGAG
ATTTTCGTCGTTTGTGGATCACTCGGATAAACGCAGTAATTCGCGAAAGGGGAGTATCCTATAGT
TATAGTAGATTAATACACGATCTGTACAAGAGACAGTTGCTTCTTAACCGTAAAATACTTGCACA
AATAGCTATATCAAATAGGAATTGTCTTTATATGATTTCGAACGAAATCATAAAGGAAGTAGATT
GGAAAGAATCCACCAGAATAATTTAAATGGAGTTTCCCGGAGAATGAACTCCGGGAAGGTAGAGT
AGAAATTAGTATGAGAAAATATGCTAAAGTAGTCAAAATGAATGAACACGTTCAATTCAATAAAA
AAAGAAATCTTTTTTTCCGATTCATTTTTTTTCTTACGACACGAT
Right flanking sequence: Indices 205196 -- 205695
AGTGAAGAAAAAGTAAGCCTAAGCCTATTTATTTCGGGCTTTAAAACCAGTAGTTCTAGCGGTCG
ACTCGGTTCTTTCAAATTGTTTCTCATTATTGAGAAAAGGTAACAAAGATAAAATACGAGCTTGT
TTTATAGCAAGAGTAATTAATCGTTGTTGTTTCAAGGTCAATCTATTCACTCGTCTTGATAATAT
TTTTCCTTGTTCACTAATAAATCGACTAATTAAACTCATGTTTCTATAATCAATTCGATCCCCCG
ATTGAATCGGGGGCAAACGCCTACGAAAAGATCGCTTGAATTTAAGAAAAGGTCGCTTGGATTTA
TCCATGGTTTGTTTGTTTAATTTATTCCTTATCCCTAAAATCCTATTTATTAAGTATAATTCATT
TTAAATCCACCCAAAATAGGATTTGTTTATTTTCTATTTAAATATGTTATATATATAATGTCATT
TTTTACCCTTCCTTGAAAGGGTAAGACACAGGTACTTGGTTCGCT
Found at i:205506 original size:21 final size:21
Alignment explanation
Indices: 205480--205520 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
205470 AAACGCCTAC
205480 GAAAAGATCGCTTGAATTTAA
1 GAAAAGATCGCTTGAATTTAA
* *
205501 GAAAAGGTCGCTTGGATTTA
1 GAAAAGATCGCTTGAATTTA
205521 TCCATGGTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.37, C:0.10, G:0.24, T:0.29
Consensus pattern (21 bp):
GAAAAGATCGCTTGAATTTAA
Left flanking sequence: Indices 204980 -- 205479
AGTAGATTGGAAAGAATCCACCAGAATAATTTAAATGGAGTTTCCCGGAGAATGAACTCCGGGAA
GGTAGAGTAGAAATTAGTATGAGAAAATATGCTAAAGTAGTCAAAATGAATGAACACGTTCAATT
CAATAAAAAAAGAAATCTTTTTTTCCGATTCATTTTTTTTCTTACGACACGATACTCAAATCTAG
ATTCACTCAAATTATGATTCAAGTGAAGAAAAAGTAAGCCTAAGCCTATTTATTTCGGGCTTTAA
AACCAGTAGTTCTAGCGGTCGACTCGGTTCTTTCAAATTGTTTCTCATTATTGAGAAAAGGTAAC
AAAGATAAAATACGAGCTTGTTTTATAGCAAGAGTAATTAATCGTTGTTGTTTCAAGGTCAATCT
ATTCACTCGTCTTGATAATATTTTTCCTTGTTCACTAATAAATCGACTAATTAAACTCATGTTTC
TATAATCAATTCGATCCCCCGATTGAATCGGGGGCAAACGCCTAC
Right flanking sequence: Indices 205521 -- 206020
TCCATGGTTTGTTTGTTTAATTTATTCCTTATCCCTAAAATCCTATTTATTAAGTATAATTCATT
TTAAATCCACCCAAAATAGGATTTGTTTATTTTCTATTTAAATATGTTATATATATAATGTCATT
TTTTACCCTTCCTTGAAAGGGTAAGACACAGGTACTTGGTTCGCTCTATTTCTTTATTTCCCCAT
GAATCGTATGTTTGTAACAATAGGGACAGAATTTTTTTAATTCTAATCGATTAGGCGTATTGTGC
CGGTTCTTTTGAGTAATATATCTGGAAATACCTCTTGATACCTTATCAACACTGTTTCGGACACA
ACTAGTACATTCCAAAATCACCGTTACTCGGACATCTTTCCCCTTTGGCCATGAACCTCCTTTGG
ATTTTTGATTTACTCAACTCTTCTATTTTCGATTCAAAACGAAGAAAGGAGTCTCGTACCTTGAA
CTGGCTACTACCGCGCAACGTGCCCTTGCTTGGTGGGTTGGAAAG
Found at i:211875 original size:35 final size:35
Alignment explanation
Indices: 211829--211896 Score: 136
Period size: 35 Copynumber: 1.9 Consensus size: 35
211819 GGAACCTGTA
211829 GATATTACTTAAGTGGCGTAGCAGTTCTTCTTTAC
1 GATATTACTTAAGTGGCGTAGCAGTTCTTCTTTAC
211864 GATATTACTTAAGTGGCGTAGCAGTTCTTCTTT
1 GATATTACTTAAGTGGCGTAGCAGTTCTTCTTT
211897 CTTCTATATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.22, C:0.16, G:0.21, T:0.41
Consensus pattern (35 bp):
GATATTACTTAAGTGGCGTAGCAGTTCTTCTTTAC
Left flanking sequence: Indices 211329 -- 211828
TTCGCGAGACCTTTTCGATCCACACTGGAGAAGTCCTCTCTCGGGCTAGGCTCTATTGGGCGGAG
GATCACCTTTCTTTACTAGAGGAGCAGGAAAGAAGACACTTACATACGTAATTCTAGAGGTGAAC
CAGCTTGGTCGGTAGAATTTTGTCGAATCTAGCAAAAGGAAGGAAATGATGCTTTTCTTAAGGCA
ATCCATAAGTCAGAAATAGAATGAGGAAGAGAGAGGACCCCTCGGAATGGTATGTGGGCCTTCCT
CAAGCAATCCCCTATGACTCAACCTTTGTTCTTGGACAACAAACAACTAGGCAACAGCTAGCAAC
AGCTTGCCTTATAATAGTAGTTGCTAGTCGTCTCATTGTTGTCCTGTGCTCTGTAACGACATGTC
CGGGCACCCGAGATTAGTAGTTGCGTCTCGTCTCATTTCCTTACTTCTTGCCTTATAATAGAATA
GTGAAATTCGAATAGGCTGAGAAAAGCGCTAAGAGGGAACCTGTA
Right flanking sequence: Indices 211897 -- 212396
CTTCTATATAGTTCTAAGGAGAGTTGCGTAGCAGTTCTTCTTATTCCCCGACTCCGTTACTTTTA
TATAATAGAGTCAAGTGGCGTAGCTGTTCTAAGTTTATAGTCTCGTTTCGTTACTGTTACTTAAG
AGATTACTTTCTTAGTAGTTGCTTCCACTCCTTATAGTTCAAACTGGAATTCGAGTTTCTAGTTG
AGTTGCGTTTAAGTTCTAAGAAAACTATTACTATAAGTTGCTTTCAGCTCCTTTCTTAGCAGGAA
AGTGGCGTAGCTGTTCTAAGTTTATAGTCGAGTTGCTTCGCTCCTTTCAAAGGCATGGAACGCCC
TTCCCCACTCCTCTCCTGTAAGTAAAGCTAAAGCTCCTTTCCCTGCGGAATAAAGAAAAGTGGCT
CCGCGCCTCTCACATTCGTTCGAGTTGCTAAAGCTCCTCTCCTTGCAGGTTCCACTCCTCTCCTT
ACTTATAGGAAAGCGAGCGGTCAACACTCCTGAAAGCGGCTTTCA
Found at i:213903 original size:20 final size:20
Alignment explanation
Indices: 213875--213949 Score: 71
Period size: 20 Copynumber: 3.6 Consensus size: 20
213865 TATAAACTTA
*
213875 GAACTGCTACGCTTCAATTC
1 GAACAGCTACGCTTCAATTC
* *
213895 GAACAGCTACGCAACTCTC-CTTA
1 GAACAGCTACG---CT-TCAATTC
*
213918 GAACTGCTACGCTTCAATTC
1 GAACAGCTACGCTTCAATTC
213938 GAACAGCTACGC
1 GAACAGCTACGC
213950 AACTCTCCTT
Statistics
Matches: 43, Mismatches: 7, Indels: 10
0.72 0.12 0.17
Matches are distributed among these distances:
19 2 0.05
20 25 0.58
23 14 0.33
24 2 0.05
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.24
Consensus pattern (20 bp):
GAACAGCTACGCTTCAATTC
Left flanking sequence: Indices 213375 -- 213874
CACGAGACTATAAGGAGAGGAGCGAAGCTGCTTGAACGAGACTGTAAAGAGAGGAGTGGAAAAGC
CTTATCTTGCTTGCTCTTCGTGGCCGTCAGAGACTGATACGCGCTCGCTACGGAAAAACAAAGAA
GTTGAGCAGCTTCCCGCATCAGGCACTAATCAATTTTGAACGTCTAATTAGATCGGGAATCATTC
AAATTGAGAACAAAAGCTCCTTGCTTTTTCTTTCCCTAGAATTTCATTGAAGCCGCAGCCCTATC
CATTTATTCATTCGACCCAACTTGATTTTGTTCCGTTCCAAGAATTCTAACACTGTTTTATACCC
TCAATGAAATTTGTGAAGAACTTTACGTTGATACGACATGCTATTTTGACCATTCATTCCCTTTC
AGGATCAGTCGTGGTCTTCCAAACTTTACCGAGAGTATGGACGAATCCCTCACTTCATCCGCTTG
ATACGGGAATATGTGGGAAGATGAAGCAACGAGACTATAAACTTA
Right flanking sequence: Indices 213950 -- 214449
AACTCTCCTTAGAACTGCTACGCTTCTATTATTACTTGTGTTATCATTTGATAACAATTGCTTTT
GTTAAGTAATTTCTTATTCTTTATAATACGATAAAGAAAGAGAGAAAGTTGATTAGAAAGCGTTA
ACAAGACTACTTGCATTTCCCTCTTTGAGTTGGCCTAGTATCTCAATGACGAATTGCATGTGTTA
AGCATAACATTGGGTTCACTTAGAAATCTTCCAGTCGTGCTTAAAAGACGGCTTTTTGACATGCT
TTTCTCCTCGATTGACAAAAGATGTTTACTTAAGGAATTACTTTCCAAGCAGGTCTTCGAAATGA
CCTCTTCCGAATGAGTGATCCAAAATTCTCGGAGTTTAGCAACTCGATAGTACGTCGAATTTTGG
ATTGCACGAGAAAGGAAAAGAAAGGGCGAATAGTTCAATTAGAATCAACGAATAGTTCAATTAGA
ACTGCGTAGCAACTATACTATAAACTTAGAACAGCTACGCCACTC
Found at i:213926 original size:23 final size:23
Alignment explanation
Indices: 213895--213972 Score: 83
Period size: 23 Copynumber: 3.5 Consensus size: 23
213885 GCTTCAATTC
213895 GAACAGCTACGCAACTCTCCTTA
1 GAACAGCTACGCAACTCTCCTTA
* * *
213918 GAACTGCTACG---CT-TCAATTC
1 GAACAGCTACGCAACTCTC-CTTA
213938 GAACAGCTACGCAACTCTCCTTA
1 GAACAGCTACGCAACTCTCCTTA
*
213961 GAACTGCTACGC
1 GAACAGCTACGC
213973 TTCTATTATT
Statistics
Matches: 43, Mismatches: 7, Indels: 10
0.72 0.12 0.17
Matches are distributed among these distances:
19 2 0.05
20 14 0.33
23 25 0.58
24 2 0.05
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.23
Consensus pattern (23 bp):
GAACAGCTACGCAACTCTCCTTA
Left flanking sequence: Indices 213395 -- 213894
AGCGAAGCTGCTTGAACGAGACTGTAAAGAGAGGAGTGGAAAAGCCTTATCTTGCTTGCTCTTCG
TGGCCGTCAGAGACTGATACGCGCTCGCTACGGAAAAACAAAGAAGTTGAGCAGCTTCCCGCATC
AGGCACTAATCAATTTTGAACGTCTAATTAGATCGGGAATCATTCAAATTGAGAACAAAAGCTCC
TTGCTTTTTCTTTCCCTAGAATTTCATTGAAGCCGCAGCCCTATCCATTTATTCATTCGACCCAA
CTTGATTTTGTTCCGTTCCAAGAATTCTAACACTGTTTTATACCCTCAATGAAATTTGTGAAGAA
CTTTACGTTGATACGACATGCTATTTTGACCATTCATTCCCTTTCAGGATCAGTCGTGGTCTTCC
AAACTTTACCGAGAGTATGGACGAATCCCTCACTTCATCCGCTTGATACGGGAATATGTGGGAAG
ATGAAGCAACGAGACTATAAACTTAGAACTGCTACGCTTCAATTC
Right flanking sequence: Indices 213973 -- 214472
TTCTATTATTACTTGTGTTATCATTTGATAACAATTGCTTTTGTTAAGTAATTTCTTATTCTTTA
TAATACGATAAAGAAAGAGAGAAAGTTGATTAGAAAGCGTTAACAAGACTACTTGCATTTCCCTC
TTTGAGTTGGCCTAGTATCTCAATGACGAATTGCATGTGTTAAGCATAACATTGGGTTCACTTAG
AAATCTTCCAGTCGTGCTTAAAAGACGGCTTTTTGACATGCTTTTCTCCTCGATTGACAAAAGAT
GTTTACTTAAGGAATTACTTTCCAAGCAGGTCTTCGAAATGACCTCTTCCGAATGAGTGATCCAA
AATTCTCGGAGTTTAGCAACTCGATAGTACGTCGAATTTTGGATTGCACGAGAAAGGAAAAGAAA
GGGCGAATAGTTCAATTAGAATCAACGAATAGTTCAATTAGAACTGCGTAGCAACTATACTATAA
ACTTAGAACAGCTACGCCACTCTTGCCCCTTCTTCCACTAGTCTT
Found at i:213932 original size:43 final size:43
Alignment explanation
Indices: 213871--213975 Score: 210
Period size: 43 Copynumber: 2.4 Consensus size: 43
213861 AGACTATAAA
213871 CTTAGAACTGCTACGCTTCAATTCGAACAGCTACGCAACTCTC
1 CTTAGAACTGCTACGCTTCAATTCGAACAGCTACGCAACTCTC
213914 CTTAGAACTGCTACGCTTCAATTCGAACAGCTACGCAACTCTC
1 CTTAGAACTGCTACGCTTCAATTCGAACAGCTACGCAACTCTC
213957 CTTAGAACTGCTACGCTTC
1 CTTAGAACTGCTACGCTTC
213976 TATTATTACT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 62 1.00
ACGTcount: A:0.27, C:0.32, G:0.14, T:0.27
Consensus pattern (43 bp):
CTTAGAACTGCTACGCTTCAATTCGAACAGCTACGCAACTCTC
Left flanking sequence: Indices 213371 -- 213870
ACGCCACGAGACTATAAGGAGAGGAGCGAAGCTGCTTGAACGAGACTGTAAAGAGAGGAGTGGAA
AAGCCTTATCTTGCTTGCTCTTCGTGGCCGTCAGAGACTGATACGCGCTCGCTACGGAAAAACAA
AGAAGTTGAGCAGCTTCCCGCATCAGGCACTAATCAATTTTGAACGTCTAATTAGATCGGGAATC
ATTCAAATTGAGAACAAAAGCTCCTTGCTTTTTCTTTCCCTAGAATTTCATTGAAGCCGCAGCCC
TATCCATTTATTCATTCGACCCAACTTGATTTTGTTCCGTTCCAAGAATTCTAACACTGTTTTAT
ACCCTCAATGAAATTTGTGAAGAACTTTACGTTGATACGACATGCTATTTTGACCATTCATTCCC
TTTCAGGATCAGTCGTGGTCTTCCAAACTTTACCGAGAGTATGGACGAATCCCTCACTTCATCCG
CTTGATACGGGAATATGTGGGAAGATGAAGCAACGAGACTATAAA
Right flanking sequence: Indices 213976 -- 214475
TATTATTACTTGTGTTATCATTTGATAACAATTGCTTTTGTTAAGTAATTTCTTATTCTTTATAA
TACGATAAAGAAAGAGAGAAAGTTGATTAGAAAGCGTTAACAAGACTACTTGCATTTCCCTCTTT
GAGTTGGCCTAGTATCTCAATGACGAATTGCATGTGTTAAGCATAACATTGGGTTCACTTAGAAA
TCTTCCAGTCGTGCTTAAAAGACGGCTTTTTGACATGCTTTTCTCCTCGATTGACAAAAGATGTT
TACTTAAGGAATTACTTTCCAAGCAGGTCTTCGAAATGACCTCTTCCGAATGAGTGATCCAAAAT
TCTCGGAGTTTAGCAACTCGATAGTACGTCGAATTTTGGATTGCACGAGAAAGGAAAAGAAAGGG
CGAATAGTTCAATTAGAATCAACGAATAGTTCAATTAGAACTGCGTAGCAACTATACTATAAACT
TAGAACAGCTACGCCACTCTTGCCCCTTCTTCCACTAGTCTTAGA
Found at i:215679 original size:27 final size:27
Alignment explanation
Indices: 215641--215696 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
215631 TTCTTGCCTT
**
215641 CTAATAGAATAGTTCAATTCGAATAGG
1 CTAATAGAATAGTGAAATTCGAATAGG
215668 CTAATAGAATAGTGAAATTCGAATAGG
1 CTAATAGAATAGTGAAATTCGAATAGG
215695 CT
1 CT
215697 GAGAAAAGCG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.41, C:0.11, G:0.20, T:0.29
Consensus pattern (27 bp):
CTAATAGAATAGTGAAATTCGAATAGG
Left flanking sequence: Indices 215141 -- 215640
TCGCTCCTCTCCTTTTTATTCAAACGGCTTCCACCCCTCTCGCATTCGCTCGAGCAGCTAAAGCC
CCTTCTTTCAAAAATCAACAAAGAGCGCTAACGAGCAAGAAAAGGGATGCGCTAAGGCAAGCTAC
GCTGTTCTAAGGCGAGTAGCTTTCCACGCCCTTCCTTTTAAAGCGCCTTGTGGAATAGTTCTATT
AGATGATGTCGCTTCCTTACTCTAACAAGTAAGCAAATAAACTCCCTTCCTCTAACAAGTAAGTC
TTTCTCCTTGTGGAATAGTTCAATTCGAACTGCTACGCTGTTCTTCTTATTCCCCGCCCCCTCTC
CAACCAGTCAAGTGGCTGAACGCCCTTCTCACATTGGAACGCCTTTCCTTACAGGAAAGATAACA
CCCAATTTGCGATGCTTTTAAGCCCCCTTTCCGAACTCTAATGTGAGATTGGTAATGAGGGAGGT
TTAAGCCGTGTTAAATGTCCCGCAAATGGCCTTACTTCTTGCCTT
Right flanking sequence: Indices 215697 -- 216196
GAGAAAAGCGCTAAGACTTAAGCACAAGAACTTGACTTTCTTCATTTCAGGTCGAGAAGGCACCT
CAAAATCGCTTTAGAAGCCAGATTAGGGCTGAGGATGCTACCAGATCTTTTCCTCTGCTGCGTGC
CGCTTTGCTGCCTTCGAAAGAGTGGTTGAAGCTCGCGCTTTTATAAGAGCAATGGTTTTGTAAAC
GAGTCATTTTTCTAGGACTTGCTTCCTTACTCTAACATTCGTTCGAGCAGCTTTCAGCTTCTTTC
CGACGCAGTCAAGTGGCGTAGCTGTTCTAAGGAGAGTTGCGTAGCAGTTCGAATTGAACTATTCT
ATTATAACAGAATCGTCATTCTCCTTAGCTTTTGTTAAGTAATTTCTATCGCTTAACTCGTTCCT
TCCTTGCTTGACTGCCTTTTCACACTCATACTAGGAAGAGCAAAATTCACTCTTTACTGAGGTGA
ATCTCTTTTGTCAAGGGCTCAAGCGCAAAGAAGAAGCGGGAGCTA
Found at i:217341 original size:38 final size:38
Alignment explanation
Indices: 217289--217432 Score: 261
Period size: 38 Copynumber: 3.8 Consensus size: 38
217279 ACGCCTTTAT
* * *
217289 TATAAGTAAGGAGAGGAGTGGAAAGCAACTCTCTTGAC
1 TATAAGGAAAGAGAGGAGTGGAAAGCTACTCTCTTGAC
217327 TATAAGGAAAGAGAGGAGTGGAAAGCTACTCTCTTGAC
1 TATAAGGAAAGAGAGGAGTGGAAAGCTACTCTCTTGAC
217365 TATAAGGAAAGAGAGGAGTGGAAAGCTACTCTCTTGAC
1 TATAAGGAAAGAGAGGAGTGGAAAGCTACTCTCTTGAC
217403 TATAAGGAAAGAGAGGAGTGGAAAGCTACT
1 TATAAGGAAAGAGAGGAGTGGAAAGCTACT
217433 TGCACTTGCT
Statistics
Matches: 103, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 103 1.00
ACGTcount: A:0.38, C:0.12, G:0.30, T:0.20
Consensus pattern (38 bp):
TATAAGGAAAGAGAGGAGTGGAAAGCTACTCTCTTGAC
Left flanking sequence: Indices 216789 -- 217288
GCCTTGTTATAATAGAATAGTTCAATTAGTTGCGTAGCAGTTCTAATTAAAGAACTATTAGTAGC
GTAGCAGTTCTAAGTTTATAGTCTCGTTTCTAAAGCTTTCCACCCCTCTCCTTACAGTCGAGTGG
CTAAAGCCCCTAATTTCCCTTGTTAGGAAATGGTGTCCTAACCAATAGACTCGAGGGCCCGAGCT
CCCCGTCCCAGCCAATCTCCCTCCGGATGAAGTGGGGCCATCTGTCTAATGATTTCCACTTGAAC
CTCGAAGCGATCTTGAGCATCGATGCGAGCTTGTTCGATCTCTACGAAGGAAGGGGAAGGGGTCT
TCGCCAAAAGGCGAGACTTAATGGCGTTAACGCTATCCCCTCCGATCACTTCATCCATATGTGTA
AAAGACACTAGCCGCACTTAAAAGCCGAGTACTCTACCGTTGAGTTAGCAACGTACACGTAATCT
TTTAAAAAGCGTTCTGAGTGAATTATTTAAGCTCCACGCCTTTAT
Right flanking sequence: Indices 217433 -- 217932
TGCACTTGCTTGACTATAAAGTTTGGAGAGGAGCGAAGCCACTTGACCGCAGGGAAAGGAGCTGA
AAGCCACTCTCTTGACTATAAGGAAAGAGAGGCGCGGAAGCTACTTGACTTTATTCTGCAAGGAA
AGGAGTTGAAAGCCACTCTCCTGTTAAGGAGAGGCGTGAAAAGCTATTTGAACTCGACTGTAAGG
AGAGGAAAAGTATGGATTAGTTGAAAGAGCTACTTCGTTCGAGCTGAATTACATCCACCCTCTCA
CTTCGTTCGAGCTTCCTTTTCCCTCTCACCGCCCATGTTTGCAGAGACGAAAGGGAATCGGTCAG
GCCTAGCGCTTAAGGCTTCTAGCTCCCCGAACCTGAAGTGGAAGGAGAAAAGCTTTAAAAGGAAA
GGCGCGAAAAGCCATAAAAAGGAGAGGAGCGAAGGCCACTCGACTAACCAAGCAAGGGGTGAGTG
CTAGCAAGAAAGCCGTTGCCTTTACAACAGGGGTGAGCGCACTAG
Found at i:238441 original size:45 final size:42
Alignment explanation
Indices: 238371--238496 Score: 159
Period size: 42 Copynumber: 2.9 Consensus size: 42
238361 TTGACTAACC
*
238371 AAGCAAGGGGTGAGTG--CTAACGCGCGAAAGCCGTTGC-CTTTAAAG
1 AAGCAAGGGGTGAGCGCACT-A-GCGCGAAAGCCGTTGCGC----AAG
238416 AAGCAAGGGGTGAGCGCACTAGCGCGAAAGCCGTTGCGCAAG
1 AAGCAAGGGGTGAGCGCACTAGCGCGAAAGCCGTTGCGCAAG
*
238458 AAGCAAGGGATGAGCGCACTAGCGCGAAAGCCGTTGCGC
1 AAGCAAGGGGTGAGCGCACTAGCGCGAAAGCCGTTGCGC
238497 TTACGCACAT
Statistics
Matches: 76, Mismatches: 2, Indels: 9
0.87 0.02 0.10
Matches are distributed among these distances:
42 41 0.54
45 31 0.41
46 2 0.03
47 2 0.03
ACGTcount: A:0.29, C:0.23, G:0.36, T:0.13
Consensus pattern (42 bp):
AAGCAAGGGGTGAGCGCACTAGCGCGAAAGCCGTTGCGCAAG
Left flanking sequence: Indices 237871 -- 238370
TCTACTATTAAGATGTTTAATAAACAGCAACAATATGTTGTGTTGTAGCTGTAGAACAGAATGCC
GTTCGCCTTTACTTTGACTTTCTGAGAAGGACTTAAGTAGCTAAGTTTCCAAAGGTGAACACCCC
CCTGTCCTTTATAGTATAGTCGTAAAGGGCTTCTCAGAAAAGTAAGGAAGAAGGCATTCGAAAGG
CCGACCACTATCTCATAGGCATTCTGGTGGTAAAACCGACGACTACACGGCTCTATACCAAGTCA
TGAGCGATAGCGAAGCCAAGCCGCCGTCTATAGGCGAAGGAACGAAAGCCCGACGAAGGCCTATG
CTACAGTAAGCAAAAAAGTAGGTTGAGGTTACGAAGTCACTTAGCCGTATACTATACAAAGGGAA
AGGCGTCGGTACGGAGTCACGTCAGCTGTGGATATAGACTAGGCTATAAGGAACGGAGTCTTAAA
CTATGGACCGAGACTACACTAAGGAACAAGGAAGCTTGACTAACC
Right flanking sequence: Indices 238497 -- 238996
TTACGCACATACGTTTTCTTGCTGCATACGTTTTCTTTCTGCGCTTTAGTTTTCTTGCTGCGCAT
ACGTTTTCTTGCTGGAAAGAGAGGGGGCGGAAAGTTCTTAGGAAGAGCCGTATGAGACAGCTCAC
GTACGGTTCGGGAGCCGAGCCCCTGCGCAGGGGCTTAGGTCAACACTTATATAATAGCCAGTCAT
CAATTGGAGGCGGGCAAGATGGTGATGAATTGCGATTGGTCTAAACCTTCGACTAGCGACTTATT
GCGGCCTGCCCAGAATGCCCATACAGACTAAGACCTTATTCACACAGCGAAGAAAGGCCGAGTGG
AAGGGGGCAGTCAGCTGGCTGCTTCTTTGCCATGCGCTTTGCTTCGCTTTATTTTCTAGAAGAAA
GAGACCAAATGAGAGTGAAAGGCAAGGGCAAGCGATAGAAAGGATAGTCCCTCGCGCGAACTACT
ACTACTAGAAAATGGTGAGACCATTAGTGAAAGAAGGACCAAGGA
Found at i:238567 original size:19 final size:19
Alignment explanation
Indices: 238504--238575 Score: 96
Period size: 19 Copynumber: 3.9 Consensus size: 19
238494 CGCTTACGCA
238504 CATACGTTTTCTTGCT--G
1 CATACGTTTTCTTGCTGCG
*
238521 CATACGTTTTCTTTCTGCG
1 CATACGTTTTCTTGCTGCG
*
238540 CTTTA-GTTTTCTTGCTGCG
1 C-ATACGTTTTCTTGCTGCG
238559 CATACGTTTTCTTGCTG
1 CATACGTTTTCTTGCTG
238576 GAAAGAGAGG
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
17 15 0.32
18 2 0.04
19 28 0.60
20 2 0.04
ACGTcount: A:0.10, C:0.24, G:0.18, T:0.49
Consensus pattern (19 bp):
CATACGTTTTCTTGCTGCG
Left flanking sequence: Indices 238004 -- 238503
GTCCTTTATAGTATAGTCGTAAAGGGCTTCTCAGAAAAGTAAGGAAGAAGGCATTCGAAAGGCCG
ACCACTATCTCATAGGCATTCTGGTGGTAAAACCGACGACTACACGGCTCTATACCAAGTCATGA
GCGATAGCGAAGCCAAGCCGCCGTCTATAGGCGAAGGAACGAAAGCCCGACGAAGGCCTATGCTA
CAGTAAGCAAAAAAGTAGGTTGAGGTTACGAAGTCACTTAGCCGTATACTATACAAAGGGAAAGG
CGTCGGTACGGAGTCACGTCAGCTGTGGATATAGACTAGGCTATAAGGAACGGAGTCTTAAACTA
TGGACCGAGACTACACTAAGGAACAAGGAAGCTTGACTAACCAAGCAAGGGGTGAGTGCTAACGC
GCGAAAGCCGTTGCCTTTAAAGAAGCAAGGGGTGAGCGCACTAGCGCGAAAGCCGTTGCGCAAGA
AGCAAGGGATGAGCGCACTAGCGCGAAAGCCGTTGCGCTTACGCA
Right flanking sequence: Indices 238576 -- 239075
GAAAGAGAGGGGGCGGAAAGTTCTTAGGAAGAGCCGTATGAGACAGCTCACGTACGGTTCGGGAG
CCGAGCCCCTGCGCAGGGGCTTAGGTCAACACTTATATAATAGCCAGTCATCAATTGGAGGCGGG
CAAGATGGTGATGAATTGCGATTGGTCTAAACCTTCGACTAGCGACTTATTGCGGCCTGCCCAGA
ATGCCCATACAGACTAAGACCTTATTCACACAGCGAAGAAAGGCCGAGTGGAAGGGGGCAGTCAG
CTGGCTGCTTCTTTGCCATGCGCTTTGCTTCGCTTTATTTTCTAGAAGAAAGAGACCAAATGAGA
GTGAAAGGCAAGGGCAAGCGATAGAAAGGATAGTCCCTCGCGCGAACTACTACTACTAGAAAATG
GTGAGACCATTAGTGAAAGAAGGACCAAGGAGGATCCTATCCTAAAGGAGAAGGAGGAGTAGGAG
GAGTCAGTTTTCTTTGAAGATCGAGGAACGTAGTGTCGGACAATT
Found at i:240585 original size:19 final size:19
Alignment explanation
Indices: 240561--240598 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
240551 TCGGTGCGAC
*
240561 CACTAAAGAATTGCTTATA
1 CACTAAAGAACTGCTTATA
*
240580 CACTAAAGAGCTGCTTATA
1 CACTAAAGAACTGCTTATA
240599 TACGTTTACT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.39, C:0.18, G:0.13, T:0.29
Consensus pattern (19 bp):
CACTAAAGAACTGCTTATA
Left flanking sequence: Indices 240061 -- 240560
CAAGACCAGGCTACCTAATGGAATGTTTAACCGATCCATTCCGGATCGACCGAATTGGTACGGAA
GTTGTAACATGGGAAAACCACGGAAAACACGACTTATTTGAATAACCCGGTGACCTACCAATTGT
AGAAGTAGGATTTTTGGCAAGCAATAAGCACTTAAATAATACAATTCAAGTGTACCATCTTCTTT
CTCATTTCGAGGAAAAGGTGCGGAAGGAAAAGGAAACAACGGAGGGATCCGAATCGGACCTAAAT
GGGAATGACATGAAAAGTCTTTTTCAAAACCTAGCATTAAGGGCGTTACGACGATATACGAGAGG
AATAGAGAAAAACTCGTGATTGGTGTGGAGGGGAAGATCTGTTTATGATATAGTTCAAGAAAGAG
TCGTCTCATTTCCTTACTTCTTTCTAATTCATTCACTTCAAGACTGGTTCTGAACGCCGCGTAAC
ATCATCTTCAACCAACCTCCTATTATCAAAAACTTTCGGTGCGAC
Right flanking sequence: Indices 240599 -- 241098
TACGTTTACTAAAAGACTGACTTTCATTCATTATCATTAGTCCAGCGTGAAACTAAGAAAGAGAG
ATGTGCCTAAGGCGGCATGTAAGCAAACTGTGCACGCTAAGAGAAGAGGAGAGATGCTCGCAATT
ACTACCACAAGAAAGCCGCCCCCTATCTTCTAAAGGGGCCCGTCACTTCGTTCGTACCTTCTTGG
CTTAGGCTTCCAACTGAACAACATGGCCTTGCCGCCCCGCCACTAGCAGAAGCTAAGCGCTTGAA
AAGCGCGCTAAGAAAGGTTGCTTCTGTCGCCCTTTCTGTGCAACAGTCCACCAGTAGCGGAAGAG
AGGGTTACCGTACATACTTCAGTCTTCCAGTTCTTACGGAAGCTCTTTCTTACCAGTCAATCAAG
TAGTACAAGAACTGTATCTTATTTTATAGCCCGGCGCGGCGGGTCGCCTTTTAAATTAAGTAGAT
AGAAGAAAGTATTAAATAGATAAGGAGTAGGTGAGTGAGTGAGTC
Found at i:275359 original size:17 final size:17
Alignment explanation
Indices: 275337--275372 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
275327 AAACTAAAGC
275337 GCAGCAAGAAAACGTAT
1 GCAGCAAGAAAACGTAT
275354 GCAGCAAGAAAACGTAT
1 GCAGCAAGAAAACGTAT
275371 GC
1 GC
275373 GCGTTAGCGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.44, C:0.19, G:0.25, T:0.11
Consensus pattern (17 bp):
GCAGCAAGAAAACGTAT
Left flanking sequence: Indices 274837 -- 275336
CGAAAAAAAAGGAGTTCGTCACTCTTTTTCACATACCTTATAACGAAAAGGAGAAAGGGTTACGA
TAGCAAGCCCCTCCCCGGCCGGAGAGCCTCCAGGACAAGGAGGCGGCGATCAACCATCCACTCTC
GAGATTCATATTGATCAATAGATCTCCGCGTCCTGCCAGTTCGCTAAGTAGACTCACTCTACCGA
GGGGCAACAAAGGCTGGAACTCTTCCTGCCAAAAACAAGGGACCTACTTCTCATCCTAGGAGTTA
GCAGGTATGAAAGAGTCCCCTCTCTGTCTGTCTCTCCGAGTTTCTACTACTAAGTAGCACTTCTG
CTATTCAATCATAGAATCGATTCCGATCAAGCTGAAAAAAGTCAGCCCTATATATGTTTGTTATT
AGTAAAGCGCGTTGGCCCTATCTATAGTAAGGGGCCCTTTCTTGCTCGTTAGCGCTGTTTTTTGA
GCTAGGGCGCCCCAGCAAGAGTATGCGCAGCAAGAAAACTAAAGC
Right flanking sequence: Indices 275373 -- 275872
GCGTTAGCGCAACGGCTTTCGCGCTAGTGCGCTCATCCGCTGCTTCTTGCTTTAGGCTTTCGCGC
TAGTGCGCTCACCCCTTGCTTCTTTAAAGGCAACGGCTTTCTTAGTTAGCACTCACCCCTTGCTT
GGTTAGTCGAGTTGCTTTTCGCCCCTCTACGTTGAGATGCACCATGTTGATAGGAATCGGCAAAG
ACCTTCTTGTACACGTCCTCGAGGGCAGCATTCATGGCAATCATCACTACTTTCTCCCGAGGGCA
TGGTATGGCTTTGTTCTTGGTCTTGTTTAATAGATGTCGAGTGCCGCTTTTCCCCGTCCGAGAAT
CTCCATCTGCTCTAAGTGGGCGCGAGCTAGAATCCTTATGTCAGCTTGGTTGTTCAATGTCTCTT
TACCCCTTGCATCTTCATCTTTTCGAAAGCCCAGACCATTCTTCTGGATCTGCATTAGTCCTATT
TCAGGTGCAAAGCCTCTTCAATAAAGACCTCTTTTTTTGCTTTCT
Found at i:309915 original size:19 final size:19
Alignment explanation
Indices: 309893--309931 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
309883 TTGCGCTAAC
*
309893 GCGCAGCCGTTTTCTTGCT
1 GCGCAGACGTTTTCTTGCT
*
309912 GCGCATACGTTTTCTTGCT
1 GCGCAGACGTTTTCTTGCT
309931 G
1 G
309932 GAGCGAAAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.08, C:0.28, G:0.26, T:0.38
Consensus pattern (19 bp):
GCGCAGACGTTTTCTTGCT
Left flanking sequence: Indices 309393 -- 309892
AAGCGGTGCATGTCGGAGAAGTAGCCTCTCCCGCAGCAGTTAGCTTTATTGACTTAACCAGAAGA
AGAAAGAAAGCGAGGTACGTGCCGATTTCCTATTAGCTTGTGTAACTCATGTCACCTAACGAATC
AATTAGCTGTACTGATGAGCTAGTTTGCTATCTTTTCTGTGTCTACATGGCCGGCTTCCCCACTA
CTTGGATTGATTTCGTCCTCCTGTATGCTGTGTACCGCGTGCTGGCTTCACTCCACTTTCAGACA
GTCTCTTAGTCACCAGTCTATTAGAGTGTTGAGAGGGGGCTTTAGGCCACTCGCCTTTACTAACC
AAGCAAGGGGTAAGCGCTAACTAAGAAAGCCATTGCGCACCAAGCAACGATTGAGTGCGCTAGCG
CGAAAGCCTAAAGCAAGAAGCAAGGGGTGAGCGCACTAGCGCGAAAGCCGTTGCCTTTACTTTAA
AGAAGCAAGGGGTGAGCGCACTAGCGCGAAAGCCGTTGCGCTAAC
Right flanking sequence: Indices 309932 -- 310431
GAGCGAAAAGCCACTTGCTTGATTATTTGGAGAGGAGCGGCTGTGAAACGGCGATTCCCCCCTTT
CCATTGAAGTAGGGAGGGCCTCCTTCCCCACCATTCCGGCCTATTATTGATAGGGATTTTACCGA
TGCTGAAGATAGCTTGCTTACCAAGCCGCCCACTTGAGAAGCTAGTCGCCAGGAAAGAAGCGAGG
AGGAAGCGAAGCTGTCTACGAAGCTTTGCTTCTCCCCCTGTAGTCGTAATACTCGGCTTGTCGCT
ACTTTGATTCAAAAGGTAACCGACGGTTCCCGACTTTCTCCGCTTTCCGCAACCGTAACCACTTG
TCATTCCGATTACTTCATCCATAAACCTTTTTTTTCTTTCTAGCGATACGCTCTAAAAAAGGAAA
GGAGAAGCTTCCATTCTAGAAGCGGTAGCTTCCCGCCTCCCTCGGGGTGAGAAGTTCCCTTCCCT
TTTCTAAAATGCCTGAGTGGTCTGCTCAGCAAACGTACAAAGTGG
Found at i:313145 original size:17 final size:17
Alignment explanation
Indices: 313123--313158 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
313113 TTAGTGGAGC
313123 GCATACGTTTTCTTGCT
1 GCATACGTTTTCTTGCT
313140 GCATACGTTTTCTTGCT
1 GCATACGTTTTCTTGCT
313157 GC
1 GC
313159 TTCGTAAAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.11, C:0.25, G:0.19, T:0.44
Consensus pattern (17 bp):
GCATACGTTTTCTTGCT
Left flanking sequence: Indices 312623 -- 313122
TGCAAAGGCTCTTTGAAGACTTTTGAAAAAGTTTTTAGCAAAAAAAGCAAAAACAATTCTCAACG
CCCTTACGAGGTAGTGATGAGTTAAACTACTCGTGTTGGCATGGAAGTCAGCCCGGTAAACTGAT
TCCATTCTGCTACTAGGGTTCCAAACCTTCCCCTGAGCTCTAGAATCTATAAATACCTTTTCCAC
TCAAGAAATGCTAAAGCTATTTAGAGTTGGTATTTCTAACTAAGTCGGAAGGAGGGCTTTGGGCA
AAGAGCAACTCGAAAGTACTTTACTTCAGTCCCAGTACTGAAAGACGTGACTTCAGGAGTGGATT
TCGGAAGGAATTCGTTTACTTCCTGCAAATTGCTTATGTAAGAACTAGTAGAAAGAAAGGAGCTG
AAAGCCACTCGCCTTTACTAACCAAGCAAGGGGTGAGTGCGCTAGCGCGAAAGCCGTTGCGCAAG
AAGCAAGAGCGCACTAGCGCGAAAGCCGTTGCGCCTTAGTGGAGC
Right flanking sequence: Indices 313159 -- 313658
TTCGTAAAGTCTCTTACCTAGAATCACCCGTAAATGAGCCACCCCTGCCTTTTGTTTGCAAGGTG
GGCAGTCGTACCTAAAGAATTACATAGATAGATAATAATGAACTAACTCGCCTATGAAGCCGAAG
CGGCCTTATTTATGTATGGTGGAGACGCAAGATATACTGTACGAGCGTCAGACTTAGGCCGTGTT
GACATCTAGGCTCATGGCACCTTTTTTGACCTATCTAGTGTGTGTGGAAACGCAGTTTCTTTCTA
TTCGAAGACGTTGGCAGAGCCACTTCCTTCTCTATTCGAGCACCCCGGCTTTAGGAAGGAAATAA
CTGTAACCTGATGGTGTTATTGGAAGGGCTTTAAAACCAATAGCGAGCAGGGATGAAAGAACGAG
AATTGAATGGCGATATAGTCTGGCTGGCTGGAGATAAACGAACTTTAAATTAGAGCTTAAGAGCT
TATTGGCTTGTCCTAGAACTGGCTATCCAAGACAACAACTGCAAC
Found at i:334914 original size:44 final size:44
Alignment explanation
Indices: 334866--334951 Score: 172
Period size: 44 Copynumber: 2.0 Consensus size: 44
334856 TGACTCCTAC
334866 CGAAGCAAGCCTCTCAAGTGCTGACCTTTCTTCCCACCTTTGAG
1 CGAAGCAAGCCTCTCAAGTGCTGACCTTTCTTCCCACCTTTGAG
334910 CGAAGCAAGCCTCTCAAGTGCTGACCTTTCTTCCCACCTTTG
1 CGAAGCAAGCCTCTCAAGTGCTGACCTTTCTTCCCACCTTTG
334952 GTGAGCTGAC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 42 1.00
ACGTcount: A:0.20, C:0.35, G:0.17, T:0.28
Consensus pattern (44 bp):
CGAAGCAAGCCTCTCAAGTGCTGACCTTTCTTCCCACCTTTGAG
Left flanking sequence: Indices 334366 -- 334865
CCGAATTGCTTACCCGCGGAACTCATTTAACCCGACCCTGCATAAGTACCAATGCCCCTTCCCCT
TTCACCTCTAGGAAAAACTTCTGGGATGAGCCCTTCTACTCGTAATTTTTATATTAGAGGGAAAA
TTCTCGATCCCAGACCAGGCTCCGATCAAGGCTTATAAAAGCATCAACCTCATCCTAAAAGGACT
CCTTTAGCTTTGGGGTTGATTTACGTGGCTCAAGACTTTGAGTCAAGAGGTCAGGTGTTCAGAAA
GGTGGTGATGCGGCATTGGCATTTGAAGCAAATTCATCAGATAGCTTGCCTTCTTTTCGTTTACG
TGGCTACATACTTGTAGCGATCAAAGGGCATATTTATTATTATTTATTATTTAACTAAGTCAAAG
GTAATTGTATGGGCCTTTGCTTCGAGAACAATCGTATTAGCGCCTTCGCAGCCTGCCTTTCCATT
CTTCGAGTGCAGTTCCTTCTTGAGCCTTTTCTTTTTGACTCCTAC
Right flanking sequence: Indices 334952 -- 335451
GTGAGCTGACCTTCTTGTGTCACGAGTGATGTCAAACCTCCTTCTTGTCTTCTATGGAGGGAAGT
GGTATAATAGGTCCCCTAAGGGAAGCCCTTTGGCAGCTGTCCGAGCCTTCCCTTGATTGTGCCTT
TAGGCTTTCTTCTTGCTGCTTTGTTTGCGCTTTCGAATCCGCTTCTGTAAAGAAAGGAGAAGAGA
GAGGCGTCGGCTAACTAAGGACGATGATGGAAACTCTCCCTGAAAGGTGAGCAAGAAGAGTCTTC
ACTACTAGCTAGTATTGAAAGAAAAGAAGGCCTACCTTCGCTTTGTGCGCTAAGAGCTTTCTTTC
CTGTAGGATAGGAAGAATGGAATAGGAAGATAAAAGGACATTTGAAGGAGTGAAACTGAACCAGA
AAAAGGCCCTTCTCTCCGGCATCAACATCCTTTCGTAGTACCCTACCCCCAGGGGAATTCGAATC
CCCGCCGTCTCCTTGAAAGAGAGGTGTCCTAACCACTAGACTTTA
Found at i:335886 original size:29 final size:29
Alignment explanation
Indices: 335852--335950 Score: 198
Period size: 29 Copynumber: 3.4 Consensus size: 29
335842 AACGGATGCG
335852 CCTCCTCGCTTCTATGAGAATCAAGCTTT
1 CCTCCTCGCTTCTATGAGAATCAAGCTTT
335881 CCTCCTCGCTTCTATGAGAATCAAGCTTT
1 CCTCCTCGCTTCTATGAGAATCAAGCTTT
335910 CCTCCTCGCTTCTATGAGAATCAAGCTTT
1 CCTCCTCGCTTCTATGAGAATCAAGCTTT
335939 CCTCCTCGCTTC
1 CCTCCTCGCTTC
335951 CCTAACACAA
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 70 1.00
ACGTcount: A:0.18, C:0.34, G:0.13, T:0.34
Consensus pattern (29 bp):
CCTCCTCGCTTCTATGAGAATCAAGCTTT
Left flanking sequence: Indices 335352 -- 335851
TCTCTCCGGCATCAACATCCTTTCGTAGTACCCTACCCCCAGGGGAATTCGAATCCCCGCCGTCT
CCTTGAAAGAGAGGTGTCCTAACCACTAGACTTTAGGGGTATATAGAATAGACTTTTCGTCAGAA
TAAGGTTCCCATCTCTTCCACTCTATCTCCTTATTGGATTGGTAGGTACATTCCTCTTTCAGTTC
ACTTAGTCGACTAGACTGCTTTCCCTCACATTCTACTCTTCATTCTAATTATAGATTGACGAAGG
TTCTTTATTCCCAATACTGGTCTTCATTCAATGCTAGCATCTCTCTCAGCTGAAAGAAGATCAAC
TCTCACCCCTTTTTCGCTTTAGTCGGAAGAGCCTCTCTCCTCCTTTCCTTCTTTATAATAAAGGC
AAGTGGCTGGAGCGCCTTTCCTTACAGGAAAGCTGCTTAAAAGCGCCTCTCTTTCCATATAGTCA
AGAGAGTTGCTCCGCTCCTCTCCTTCCAGCAAGAAAACGGATGCG
Right flanking sequence: Indices 335951 -- 336450
CCTAACACAACAGTTAAGGGGAATAGTTAAGACAACAGTTAAGACAGAACTCTTAAAGCACTCTT
AAGACACTCTTAACAAGTAGTTCATTAAAGGAGCTTTAGCCGTTCGACTTACAGGAGAAGAGCGA
AACGCCACTCGACTTAGAACTGCTACGCCACTTTCCTGACTAACCAAGCAAGGGGTGAGTGCGCT
AGCGCGAAAGCCTAAAGCAAGAAGCAAGGGATGAGTTGCCTTCTTCAGATGGAAATTCTCTCTGG
GAAGATTGGTGTGGCTCGTCAAGTCAAAATCTCCTTTCCCAACTGCTTTATCGAGCCTGCTCTCC
TGGATCCTAATTCCATCCTCAGGCTATGACTCACTTCGTCCCTCACGGAGATTGGAAATAGATAA
GGGGAATAGATTCAGTCTGGACAGCTGTTTAAAGAAAGGGATCCGTCTTCCTTCCATTCTTCGGA
GCACCTAGCAAGGCCAGTGAAATGAGTCAATTTGGAAGGTTAATG
Found at i:347015 original size:40 final size:39
Alignment explanation
Indices: 346971--347093 Score: 133
Period size: 41 Copynumber: 3.0 Consensus size: 39
346961 TTGACTAACC
* *
346971 AAGCAAGGGGTGAGTGCTAACTA-AGAAAGCCTAAAGCAAG
1 AAGCAAGGGATGAGCGC--ACTAGAGAAAGCCTAAAGCAAG
*
347011 AAGCAAGGGATGAGCGCACTAGCGCGAAAGCCTAAAGCAAG
1 AAGCAAGGGATGAGCGCACTA--GAGAAAGCCTAAAGCAAG
*
347052 AAGC-AGCGGATGAGCGCACTAGCGCGAAAGCCTAAAGCAAG
1 AAGCAAG-GGATGAGCGCACTA--GAGAAAGCCTAAAGCAAG
347093 A
1 A
347094 CGGATGAGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 7
0.88 0.03 0.08
Matches are distributed among these distances:
38 4 0.05
40 17 0.22
41 55 0.72
ACGTcount: A:0.40, C:0.20, G:0.31, T:0.09
Consensus pattern (39 bp):
AAGCAAGGGATGAGCGCACTAGAGAAAGCCTAAAGCAAG
Left flanking sequence: Indices 346471 -- 346970
CAAGGGTCCTGGTACTATCCAGGTGCGAAGAACCCCGGAGGTGACTGCAATGAGCAGAAATCTCA
CTCACGGGCCTAAACGACGAGCAAACACTCGAACGTGAGAGCAAGGGATCACCCAACGAATGGAC
GAGCTCAAAGGGGGCAGGGAGGCAAGAACCATGCTTTCAGAGACCTAACCCAACCCGGTCCGAAT
CTTATCTGAACTGCGAGAATAACTGACTAAGCCGTGCCATAAGGGGTCATTCTCCAAACGGGACG
GGGCCAAGCCTTTAGGTTGTTTAAGTAGGTTGGGTGACAGATCGGCCATAGGAGTACTCCGGGAT
ATAAACCAGGGCAACAAAAGTGGAGCATACGACGATGCCGCCCGTTTTCATTTCGTGGAAGTCCC
CGGCAGAGGAAAGGGCTGTAGGTGATGGCGCCTTCTGCTTCTTATCTAGAGAGGGGCGAAAAGCA
ACTCGACTATAAGGAGAGGAGTGAAAGCCGCTTGCTTGACTAACC
Right flanking sequence: Indices 347094 -- 347593
CGGATGAGCGCACTAGCGCGAAAGCCGTTGCGCTAACGCGCATACGTTTTCTTGCTGCGCATACG
TTTTCTTGCTGCATACGTTTTCTTGCTGCGCATACTCTTGCTGGAGAGGCGCTCCAAGCCACTTG
CACTTGCTTGATTATTTGGAGAGGGGCGTCGAAATCCTTTCTATTGGTTCTTGCGTGGCAGCTGG
TATAGATGATGAAAGGCGGGCCGCTTTTTCGGGACCTATTCTCAACATAGGCGGCAAAGCGAAAT
AGGAAAGGGGCCGAGCTGACTGATGAGTGCCTTTTTAGCCTTTATTTTAAAGGCTCTCATGTGGA
GCTAACATGGCTGGCTACATACAAGTATAGCCAAATCAAGATGAGATGGGACGGCCGTTCAGAGG
CCGCAGCGGGACTACCATAGGAAAGCCCGCCCCCGCTAGCTAACATAGACATAGAAAGAGATTCC
CGGATAGCAGTAGTCTCTATGTGAATCTCTTCCCGACCGGCCAGG
Found at i:347044 original size:41 final size:40
Alignment explanation
Indices: 346995--347119 Score: 204
Period size: 41 Copynumber: 3.2 Consensus size: 40
346985 TGCTAACTAA
346995 GAAAGCCTAAAGCAAGAAGCAAGGGATGAGCGCACTAGCGC
1 GAAAGCCTAAAGCAAGAAGC-AGGGATGAGCGCACTAGCGC
347036 GAAAGCCTAAAGCAAGAAGCAGCGGATGAGCGCACTAGCGC
1 GAAAGCCTAAAGCAAGAAGCAG-GGATGAGCGCACTAGCGC
347077 GAAAGCCTAAAGCAAG-A-C--GGATGAGCGCACTAGCGC
1 GAAAGCCTAAAGCAAGAAGCAGGGATGAGCGCACTAGCGC
347113 GAAAGCC
1 GAAAGCC
347120 GTTGCGCTAA
Statistics
Matches: 83, Mismatches: 0, Indels: 7
0.92 0.00 0.08
Matches are distributed among these distances:
36 25 0.30
39 1 0.01
40 3 0.04
41 54 0.65
ACGTcount: A:0.38, C:0.24, G:0.31, T:0.07
Consensus pattern (40 bp):
GAAAGCCTAAAGCAAGAAGCAGGGATGAGCGCACTAGCGC
Left flanking sequence: Indices 346495 -- 346994
GCGAAGAACCCCGGAGGTGACTGCAATGAGCAGAAATCTCACTCACGGGCCTAAACGACGAGCAA
ACACTCGAACGTGAGAGCAAGGGATCACCCAACGAATGGACGAGCTCAAAGGGGGCAGGGAGGCA
AGAACCATGCTTTCAGAGACCTAACCCAACCCGGTCCGAATCTTATCTGAACTGCGAGAATAACT
GACTAAGCCGTGCCATAAGGGGTCATTCTCCAAACGGGACGGGGCCAAGCCTTTAGGTTGTTTAA
GTAGGTTGGGTGACAGATCGGCCATAGGAGTACTCCGGGATATAAACCAGGGCAACAAAAGTGGA
GCATACGACGATGCCGCCCGTTTTCATTTCGTGGAAGTCCCCGGCAGAGGAAAGGGCTGTAGGTG
ATGGCGCCTTCTGCTTCTTATCTAGAGAGGGGCGAAAAGCAACTCGACTATAAGGAGAGGAGTGA
AAGCCGCTTGCTTGACTAACCAAGCAAGGGGTGAGTGCTAACTAA
Right flanking sequence: Indices 347120 -- 347619
GTTGCGCTAACGCGCATACGTTTTCTTGCTGCGCATACGTTTTCTTGCTGCATACGTTTTCTTGC
TGCGCATACTCTTGCTGGAGAGGCGCTCCAAGCCACTTGCACTTGCTTGATTATTTGGAGAGGGG
CGTCGAAATCCTTTCTATTGGTTCTTGCGTGGCAGCTGGTATAGATGATGAAAGGCGGGCCGCTT
TTTCGGGACCTATTCTCAACATAGGCGGCAAAGCGAAATAGGAAAGGGGCCGAGCTGACTGATGA
GTGCCTTTTTAGCCTTTATTTTAAAGGCTCTCATGTGGAGCTAACATGGCTGGCTACATACAAGT
ATAGCCAAATCAAGATGAGATGGGACGGCCGTTCAGAGGCCGCAGCGGGACTACCATAGGAAAGC
CCGCCCCCGCTAGCTAACATAGACATAGAAAGAGATTCCCGGATAGCAGTAGTCTCTATGTGAAT
CTCTTCCCGACCGGCCAGGCCGAATCGGGGCACCACTTGGGATGG
Found at i:347153 original size:19 final size:19
Alignment explanation
Indices: 347131--347193 Score: 112
Period size: 19 Copynumber: 3.4 Consensus size: 19
347121 TTGCGCTAAC
347131 GCGCATACGTTTTCTTGCT
1 GCGCATACGTTTTCTTGCT
347150 GCGCATACGTTTTCTTGCT
1 GCGCATACGTTTTCTTGCT
347169 --GCATACGTTTTCTTGCT
1 GCGCATACGTTTTCTTGCT
347186 GCGCATAC
1 GCGCATAC
347194 TCTTGCTGGA
Statistics
Matches: 42, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
17 17 0.40
19 25 0.60
ACGTcount: A:0.13, C:0.27, G:0.21, T:0.40
Consensus pattern (19 bp):
GCGCATACGTTTTCTTGCT
Left flanking sequence: Indices 346631 -- 347130
ATGCTTTCAGAGACCTAACCCAACCCGGTCCGAATCTTATCTGAACTGCGAGAATAACTGACTAA
GCCGTGCCATAAGGGGTCATTCTCCAAACGGGACGGGGCCAAGCCTTTAGGTTGTTTAAGTAGGT
TGGGTGACAGATCGGCCATAGGAGTACTCCGGGATATAAACCAGGGCAACAAAAGTGGAGCATAC
GACGATGCCGCCCGTTTTCATTTCGTGGAAGTCCCCGGCAGAGGAAAGGGCTGTAGGTGATGGCG
CCTTCTGCTTCTTATCTAGAGAGGGGCGAAAAGCAACTCGACTATAAGGAGAGGAGTGAAAGCCG
CTTGCTTGACTAACCAAGCAAGGGGTGAGTGCTAACTAAGAAAGCCTAAAGCAAGAAGCAAGGGA
TGAGCGCACTAGCGCGAAAGCCTAAAGCAAGAAGCAGCGGATGAGCGCACTAGCGCGAAAGCCTA
AAGCAAGACGGATGAGCGCACTAGCGCGAAAGCCGTTGCGCTAAC
Right flanking sequence: Indices 347194 -- 347693
TCTTGCTGGAGAGGCGCTCCAAGCCACTTGCACTTGCTTGATTATTTGGAGAGGGGCGTCGAAAT
CCTTTCTATTGGTTCTTGCGTGGCAGCTGGTATAGATGATGAAAGGCGGGCCGCTTTTTCGGGAC
CTATTCTCAACATAGGCGGCAAAGCGAAATAGGAAAGGGGCCGAGCTGACTGATGAGTGCCTTTT
TAGCCTTTATTTTAAAGGCTCTCATGTGGAGCTAACATGGCTGGCTACATACAAGTATAGCCAAA
TCAAGATGAGATGGGACGGCCGTTCAGAGGCCGCAGCGGGACTACCATAGGAAAGCCCGCCCCCG
CTAGCTAACATAGACATAGAAAGAGATTCCCGGATAGCAGTAGTCTCTATGTGAATCTCTTCCCG
ACCGGCCAGGCCGAATCGGGGCACCACTTGGGATGGGAATGGCTCAGCCCACATGCATCATTTGA
TGAAAGCACTCCAGTCGCCTCCGATGATTGGTTTGTCAACCACGC
Found at i:347174 original size:17 final size:17
Alignment explanation
Indices: 347133--347187 Score: 92
Period size: 17 Copynumber: 3.1 Consensus size: 17
347123 GCGCTAACGC
347133 GCATACGTTTTCTTGCT
1 GCATACGTTTTCTTGCT
347150 GCGCATACGTTTTCTTGCT
1 --GCATACGTTTTCTTGCT
347169 GCATACGTTTTCTTGCT
1 GCATACGTTTTCTTGCT
347186 GC
1 GC
347188 GCATACTCTT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
17 19 0.53
19 17 0.47
ACGTcount: A:0.11, C:0.25, G:0.20, T:0.44
Consensus pattern (17 bp):
GCATACGTTTTCTTGCT
Left flanking sequence: Indices 346633 -- 347132
GCTTTCAGAGACCTAACCCAACCCGGTCCGAATCTTATCTGAACTGCGAGAATAACTGACTAAGC
CGTGCCATAAGGGGTCATTCTCCAAACGGGACGGGGCCAAGCCTTTAGGTTGTTTAAGTAGGTTG
GGTGACAGATCGGCCATAGGAGTACTCCGGGATATAAACCAGGGCAACAAAAGTGGAGCATACGA
CGATGCCGCCCGTTTTCATTTCGTGGAAGTCCCCGGCAGAGGAAAGGGCTGTAGGTGATGGCGCC
TTCTGCTTCTTATCTAGAGAGGGGCGAAAAGCAACTCGACTATAAGGAGAGGAGTGAAAGCCGCT
TGCTTGACTAACCAAGCAAGGGGTGAGTGCTAACTAAGAAAGCCTAAAGCAAGAAGCAAGGGATG
AGCGCACTAGCGCGAAAGCCTAAAGCAAGAAGCAGCGGATGAGCGCACTAGCGCGAAAGCCTAAA
GCAAGACGGATGAGCGCACTAGCGCGAAAGCCGTTGCGCTAACGC
Right flanking sequence: Indices 347188 -- 347687
GCATACTCTTGCTGGAGAGGCGCTCCAAGCCACTTGCACTTGCTTGATTATTTGGAGAGGGGCGT
CGAAATCCTTTCTATTGGTTCTTGCGTGGCAGCTGGTATAGATGATGAAAGGCGGGCCGCTTTTT
CGGGACCTATTCTCAACATAGGCGGCAAAGCGAAATAGGAAAGGGGCCGAGCTGACTGATGAGTG
CCTTTTTAGCCTTTATTTTAAAGGCTCTCATGTGGAGCTAACATGGCTGGCTACATACAAGTATA
GCCAAATCAAGATGAGATGGGACGGCCGTTCAGAGGCCGCAGCGGGACTACCATAGGAAAGCCCG
CCCCCGCTAGCTAACATAGACATAGAAAGAGATTCCCGGATAGCAGTAGTCTCTATGTGAATCTC
TTCCCGACCGGCCAGGCCGAATCGGGGCACCACTTGGGATGGGAATGGCTCAGCCCACATGCATC
ATTTGATGAAAGCACTCCAGTCGCCTCCGATGATTGGTTTGTCAA
Found at i:348527 original size:36 final size:36
Alignment explanation
Indices: 348475--348553 Score: 151
Period size: 36 Copynumber: 2.2 Consensus size: 36
348465 AGCAGCTGCA
348475 CGAAAG-CTAAAGCAAGACGGATGAGCGCACTAGCG
1 CGAAAGCCTAAAGCAAGACGGATGAGCGCACTAGCG
348510 CGAAAGCCTAAAGCAAGACGGATGAGCGCACTAGCG
1 CGAAAGCCTAAAGCAAGACGGATGAGCGCACTAGCG
348546 CGAAAGCC
1 CGAAAGCC
348554 GTTGCGCCTT
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
35 6 0.14
36 37 0.86
ACGTcount: A:0.37, C:0.25, G:0.30, T:0.08
Consensus pattern (36 bp):
CGAAAGCCTAAAGCAAGACGGATGAGCGCACTAGCG
Left flanking sequence: Indices 347975 -- 348474
GCCCCCTTCTCCCATGCTGAGTCACAGGCAGCGCCTCGGAAAGCACGGACGAGCCACATGCAGGG
AAACTTGCACGTGTGGTTCTGGCCGGGGACCCCGGTATACTGTACTAATATGTGTAGGTTCCCGT
AATTCGAGTGAGATTGTCATGGCGCAAAAGCAGATATGGTCCGGTATTCCCTTGTTCCCTGTATT
GGTTATGTTCTTTATATCTCGTCTAGCAGAAACTAATCGAGCTCCCTTTGATCTCCCAGAAGCGG
AAGCTGAATCAGTTGCAGGCTATAATGTAGAATATGCGCGGGATGCGATCCTTAATAGTTCACTG
TTGGCGGAAGCCAATGTCCCGGGGTCTCGGGGACTCATTCTGACTGAAACAAGGGGCGGGTCTTT
ACCAACTTCAAAATATTCTATTTTAGGGAAGCCAAAAAAGGTGAGCGCCTAGCGCGAAAGGTTGC
TTTACTAAGTAAGATAAGGCAAGAAGCAAGGGCGCAGCAGCTGCA
Right flanking sequence: Indices 348554 -- 349053
GTTGCGCCTTAGTGGAGCGCATACGTTTTCTTGCTTCTTAGCGCATCCCTTTTCTTGCTCGTTAG
CGCTTGACTAATAAGATAGAAAGAGCCTTTCTTGCTTGTTTAGTAAAGTCTCGCTTTTTGATAGG
AGTAGGTGCTTGCTAGGGCAGGGCACTTTTCATTCTTCATTCGAAACTAACAAGTGTCGGGTCGG
GGATTTCTGCCTTGTTATCAAAAAGGGAGTTGGGTAAAGCAAACTCTCTCCTTGGAGGAGCACGG
GCTTAGTCAAGTAGAACCGGGTTGCGCTGCTTGATGCTCCGATCGAAAACAAATCAGTGGGGCCA
TGCCGGTACGACTGAATATGCGTTAGAAAGGTCAATCCCTCCCCTACGACACCAAAAAAACCGGG
CCGAACTTCTAAACCGCCCGCTTCCATAGAACAATATCGTGGCAACGTAGACCTAAGTGGTCATA
TTGGATCCTTGGGAACCATCACAAGTACGGCCGGCCTATATATAT
Found at i:348596 original size:24 final size:24
Alignment explanation
Indices: 348569--348621 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
348559 GCCTTAGTGG
*
348569 AGCGCATACGTTTTCTTGCTTC-TT
1 AGCGCATACCTTTTCTTGC-TCGTT
*
348593 AGCGCATCCCTTTTCTTGCTCGTT
1 AGCGCATACCTTTTCTTGCTCGTT
348617 AGCGC
1 AGCGC
348622 TTGACTAATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
23 2 0.08
24 24 0.92
ACGTcount: A:0.11, C:0.30, G:0.19, T:0.40
Consensus pattern (24 bp):
AGCGCATACCTTTTCTTGCTCGTT
Left flanking sequence: Indices 348069 -- 348568
CCCCGGTATACTGTACTAATATGTGTAGGTTCCCGTAATTCGAGTGAGATTGTCATGGCGCAAAA
GCAGATATGGTCCGGTATTCCCTTGTTCCCTGTATTGGTTATGTTCTTTATATCTCGTCTAGCAG
AAACTAATCGAGCTCCCTTTGATCTCCCAGAAGCGGAAGCTGAATCAGTTGCAGGCTATAATGTA
GAATATGCGCGGGATGCGATCCTTAATAGTTCACTGTTGGCGGAAGCCAATGTCCCGGGGTCTCG
GGGACTCATTCTGACTGAAACAAGGGGCGGGTCTTTACCAACTTCAAAATATTCTATTTTAGGGA
AGCCAAAAAAGGTGAGCGCCTAGCGCGAAAGGTTGCTTTACTAAGTAAGATAAGGCAAGAAGCAA
GGGCGCAGCAGCTGCACGAAAGCTAAAGCAAGACGGATGAGCGCACTAGCGCGAAAGCCTAAAGC
AAGACGGATGAGCGCACTAGCGCGAAAGCCGTTGCGCCTTAGTGG
Right flanking sequence: Indices 348622 -- 349121
TTGACTAATAAGATAGAAAGAGCCTTTCTTGCTTGTTTAGTAAAGTCTCGCTTTTTGATAGGAGT
AGGTGCTTGCTAGGGCAGGGCACTTTTCATTCTTCATTCGAAACTAACAAGTGTCGGGTCGGGGA
TTTCTGCCTTGTTATCAAAAAGGGAGTTGGGTAAAGCAAACTCTCTCCTTGGAGGAGCACGGGCT
TAGTCAAGTAGAACCGGGTTGCGCTGCTTGATGCTCCGATCGAAAACAAATCAGTGGGGCCATGC
CGGTACGACTGAATATGCGTTAGAAAGGTCAATCCCTCCCCTACGACACCAAAAAAACCGGGCCG
AACTTCTAAACCGCCCGCTTCCATAGAACAATATCGTGGCAACGTAGACCTAAGTGGTCATATTG
GATCCTTGGGAACCATCACAAGTACGGCCGGCCTATATATATTTGAACGAAAATGCCGTGTCGTC
CAGCGGAGCCTAGAAGAAGGTGACTCGCGCAGACAGCTGACTCCT
Found at i:369816 original size:37 final size:37
Alignment explanation
Indices: 369742--369848 Score: 117
Period size: 37 Copynumber: 2.9 Consensus size: 37
369732 ATGCGCGTTA
* *** *
369742 GCGCAACGGCTTTCGCGCTAGTGCGCTCTTGCTTCTT
1 GCGCAACGGCTTTCGCGCTAGCGCGCTCACCCCTCTT
*
369779 GCGCAACGGCTTTCGCGCTAGGGCGCTCACCCCTCTT
1 GCGCAACGGCTTTCGCGCTAGCGCGCTCACCCCTCTT
*** *
369816 GCTTTA-GGCTTTCGCGCTAGCGCACTCACCCCT
1 GCGCAACGGCTTTCGCGCTAGCGCGCTCACCCCT
369849 TGCTTCTTGC
Statistics
Matches: 60, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
36 25 0.42
37 35 0.58
ACGTcount: A:0.10, C:0.37, G:0.25, T:0.27
Consensus pattern (37 bp):
GCGCAACGGCTTTCGCGCTAGCGCGCTCACCCCTCTT
Left flanking sequence: Indices 369242 -- 369741
TGCTATTTCATCTGCAGCTCTTACCGTTGAAGGAATAAGTATTGCTTTGGCTTTCTTGCTTTCAC
CAGGTCTAGCTAGGCTGGGAGTCGATTAGCCCGAGTTGTGTTAAGATAAGTGGCACTTGAATTGG
AAGTAGCCATCGGCCAGGTCTTGGATAGATCTCAAGCGGGCTTGAACTGCTTTATCTTTATTCTG
AAGCTTCAGCTGGCCTACGAGGCTGCTGAAAGAGAAGAAAAGGAAAGGGGGTACTAAAAAAAAAA
GGGACTGCTACCAATTAGGCTAGAAAGAAGACAGTAAGCGCCGGGTAAAGTGACTTACTTGAATG
GTGAGCTATCCTATAAGACTAAGAAGCGGGGAGAGAGAAGGATAACCTCTTTGAAAAGGACAGAG
CCGCTTGGCCGCTACTTACACATCTGGAGTTCCGGATTGAACTAGGGAACGGAGCAAGAAAACTA
AAGCGCAGAAAGAAAAGCGCGCAGCAAGAAAACGTATGCGCGTTA
Right flanking sequence: Indices 369849 -- 370348
TGCTTCTTGCAACGAAGGCCCTTAGATAGGACTTCATCTATGAATAGAAGAGATTTTCTTTCTAG
TAGAGCTCATCACGACCATCATAACCTAACTCCAGGACTGCTACGGGCACTGATCCTTCTATTCA
AAGTTTCCTTTCTCCTCTTGAATGTAGTTTGTCCTACAGCTCGCTAAAGTGAAGGTTATTCAGCA
GTGTAAGCAAGTCACTCTTAACCCTATAGTGAATTCAGATATGCTGCGCTAGGAGCTAATGAAAG
TCATGTAGCTCATCTAACTCAATAGGCTACTGGTGCTTATTATGTTCCCAATCTATGAAAGAAGA
GTTGAATTCCCCGGAAGAAGATTCGCCGAACGGAGAATAAGCTCTAAATCTTAGTTCTCGAAAGC
GAGTGAATCAGTCTTCCTTATAGCTCTTTCCTCCCTTTGCTTTGGTTGTGTTTAACCGCGGTTAA
ACACAAAGAAAGGGTTGTTTAGCTAATAGTAATAGTTCGAGCAGG
Found at i:379090 original size:20 final size:21
Alignment explanation
Indices: 379061--379102 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
379051 AGCCAGATGT
*
379061 ATCCATTTATAATAGT-AGTA
1 ATCCACTTATAATAGTAAGTA
379081 ATCCACTTATAATAGTAAGTA
1 ATCCACTTATAATAGTAAGTA
379102 A
1 A
379103 AGTACCTTGC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 15 0.75
21 5 0.25
ACGTcount: A:0.43, C:0.12, G:0.10, T:0.36
Consensus pattern (21 bp):
ATCCACTTATAATAGTAAGTA
Left flanking sequence: Indices 378561 -- 379060
TGAATTATCGGCACCTTGAACTGTACTATCGGAACTGTGCTCTGAAGATTTCTTTAAAGTAACCC
AGTCAGATGTCTCAGAAAGGGTAGTGATCTCCCCCTGAAAAGTATCACGACCATAAAGAGAAGAA
AAGGGAGATTGCATGTTGATAACAGAAAATGGCAATCTGTTGATTAAATACACTGCAGTAGTGAA
TGCTTCAACCCATAGATGCTTTGGTACTCCATTATTTATCATCAAAGTCAAAGCCATTTCAACTA
TAACTATATGTCGGTGTTTTCTTTCGGACACCCCATTCTGCAGCGGAGTATGAACACACGACAGC
TCACGTTTGATTCCTATCTTCAGGAGCATGAAATCAAACACCCTTGACACGTATTCTCCGCCGGA
GTTCAGACCTCAACCTCTTGATCTGGAGATTTGACTTTTTTTCCAAACTTTCTATATATTAAACA
ACGAAAGAGCTTAGGACTTCTCTCTAAGTAAAGAAAGCCAGATGT
Right flanking sequence: Indices 379103 -- 379602
AGTACCTTGCACCTATGAATGACTGCACTCGAGTAGGACCCCAACATTCAATTCAAGTAGTTGTC
TGTGATATATCCAACAATCAGCCGTAGGTCAAATCACAAGTGGACACTAACGAATGAATCAATCC
AAAGAAAGGCACAATTGGATTCTTATGTTTAATCCAGGAGCATACAATTGCCAACTGTAAACAAT
CACATGAATTGTTCAACCCATCTGAATGAAATGCAGGAATATACCCTAGACAATGGAAGAAGTCT
TGCACTGTGTGTTGTGTATGTCTCAGGCGACGGCGGGTCCCATTCCTTATCCTAATGAAGCAGCT
GAAAAAAAGGAATGTAGAGAAGAATATCCGTATAATAAAGCTTTCCCAACCGGCCAACGATCCTT
CCCGTGCGCTGATCGTGGATAAGACACTCAGAAGAAGAAAAGATGACACGAAGATGGTTAGCTGC
AAGGTGACTGACAGAAAAGAAGTTGTTTTTAGGAGGAAAATGGAA
Found at i:381345 original size:41 final size:44
Alignment explanation
Indices: 381282--381409 Score: 163
Period size: 41 Copynumber: 2.8 Consensus size: 44
381272 TTTATTAACC
* *
381282 AAGCAAGGGGTGAGTGCGCTAGCGCGAAAGCCGTTGCCTTTAC-
1 AAGCAAGGGGTGAGCGCACTAGCGCGAAAGCCGTTGCCTTTACA
381325 AA-C-AGGGGTGAGCGCACTAGCGCGAAAGCCGTTGCCTTTACTTTAAA
1 AAGCAAGGGGTGAGCGCACTAGCGCGAAAGCCGTTGCCTTTAC-----A
381372 GAAGCAAGGGGTGAGCGCACTAGCGCGAAAGCCGTTGC
1 -AAGCAAGGGGTGAGCGCACTAGCGCGAAAGCCGTTGC
381410 GCTAACGCGC
Statistics
Matches: 74, Mismatches: 2, Indels: 11
0.85 0.02 0.13
Matches are distributed among these distances:
41 36 0.49
42 1 0.01
43 2 0.03
48 2 0.03
49 1 0.01
50 32 0.43
ACGTcount: A:0.26, C:0.23, G:0.34, T:0.17
Consensus pattern (44 bp):
AAGCAAGGGGTGAGCGCACTAGCGCGAAAGCCGTTGCCTTTACA
Left flanking sequence: Indices 380782 -- 381281
CCCCAATCAGCATTACTAACGATTTCAACTCTCCCATGGCCATGATTAGTATAGATCATACCTTT
GCCAAGATAACCTTTGAGGTACCTCAAGATCCTGTATACTACATGTAGGTGTGCTTGACAAGGAG
CATGCATATACTGGCTTACCAACCCCACAGCATAGGTAATGTCAGGTCTAGTGATAGTAAGATAT
CTAAGTTTTCCCACAAGCCTCTGATGCCTGCATCATCCAAGGTTCTTTTCTCTTTTCTTCAAGCT
TATGATTTTCTTCTATTGGGCTAATTGCGGCCTTGCAACCTAACATCCCTGTTTTCTTCAAATCA
AGGACATAATTTGAGAGATGGCTCTACTTCTTATAGATCTCGAAAACCTCTGTGTCCAAGAAGTA
CCTTAGCATGCCAAGTTTATGTCGAAGGTGCGGCTTCTAAAGAAAGTCAACTTAGGCATCTTCAA
GAGCTTAACCAAAGAGAGGAGCGGAGCAACTCGACTTTATTAACC
Right flanking sequence: Indices 381410 -- 381909
GCTAACGCGCAGCCGTTTTCTTGCTGGAAAGGAGCTGAAAGCAAAGGCCAATAGCCGATAGCTGA
TGTCACTAGCCAACACTTCTTTATCTACTTGAAAGCTGATGGGAGTACGGCTTTCTTCAAGGAAG
TATCCCATATGATATTCTATTAGTAAAGAGCCCTTGATCCTAGATAAGTAAGCAGATATGCCTAT
GGCTGGAAAGATAGCGAGCGCTATTCTCAACTTAGTCTCTCAGAGGCCAGCTCGTTGTAACCCTA
AAACACGGCGTTAGCGGGGTTGGGCTCCCCCTGCAGAAATACAACAAACATGGGACAGCCGGGAA
CGATGACCCTTCTCAAGCCTGAGGCCTAAGTTGGACTTTCTCTTTCTGCTACTTGCCACTCCGAA
GTTTAGGATTGAGTTTCGAACTGATGGGATTTTGCGAATGGTAATGAAGCTTGCCATTCTGTTTA
TTTGGCCGAATCCGACTCTGGGCCTGCCCTTTTGCTAGCTTTTTC
Found at i:385639 original size:21 final size:21
Alignment explanation
Indices: 385598--385639 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
385588 TTGCTCGGTT
*
385598 AACCCTCCAAAACAGTTTCAA
1 AACCCTCCAAAACAGTCTCAA
* *
385619 AACCCTCCAAACCTGTCTCAA
1 AACCCTCCAAAACAGTCTCAA
385640 CCCCTCCGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.38, C:0.38, G:0.05, T:0.19
Consensus pattern (21 bp):
AACCCTCCAAAACAGTCTCAA
Left flanking sequence: Indices 385098 -- 385597
CTTTATTTCTCTATTTTGTCTACTTTGATTTATCTGTCTTTATTTTCAGACTCAAAAGTGGAAGC
TTTATTATAAGACTCTGACTTCTTCAGATTGAAGAGAGAGTCTATGTCTTTGATCTGCTTTCTGT
TGAAGGAGTATTGTGCGATGAACAGCTTGCACAACTGAGGGAAGTTCGAGATCGTCTTCGATGGG
ATCTTGTAGAGGTAGAGACGCGGCGAATCGTACGTTTTGTTTCCATTCCCTTTCAACACAACTAT
AAATTTCGTACGATTCCTCGGGCCTGGTGCTTCATTTCACTAATAAATCATCTTATTATCCGATG
CTCCGGGGAATTGGGGCTTTTATTAGTACTACTCTGTCATTCCTCCCGTTGCTTTCAATGTCTTC
TTTTAGCTTCTTAGGTGCTTCCTCTCGGGTTTGTGTTACTGGGTTAATAACTAGTGACTTGTGAC
TTCCTTTTTGAATCCCTGCACTCACAGTCTTAGTCTTGCTCGGTT
Right flanking sequence: Indices 385640 -- 386139
CCCCTCCGGATACAAGCCCTTTTTCCGGTTCCTCGATAAGACTATTTCCTTTCCTATCCCTTCCC
TATAATGATACCTGTCTGTATGTTATTTTAAGCCGCGTTTCCATATCCTGGGTCTTCCCTAGGTC
TTTCATTCGCTTCGGATCTTGTCTCCCGCTTGTTCAGTTTGTCCGAGTATGGAGGGGTTGCGAGT
CTAACCACCGCTTTGCCTAATGCAACCCTTTGTCCGCTGGACCCCAGGTTTCTTTGGAGTCGTTT
ACAATGGCGCCTCAATGTTGTTCCTTTGATATACATCCCTGTCCGTCTGAACCGATTACGTTTTC
ATAGCAGGTGAGTTTCTACAAATCTGGCATCGGTTTCACGGCCAGCGCAGTTATTTCCATTCTTA
CTTTGGAGTTCTCTAGAACAGTGATAGTTTGATATACATTACGCCATCAGCCGTCATTCCATGAG
AGGAGGAGGGTTTCGCTCCCTCTGCTTTGAGAAAGCAAAAACGAG
Found at i:408222 original size:20 final size:20
Alignment explanation
Indices: 408197--408254 Score: 116
Period size: 20 Copynumber: 2.9 Consensus size: 20
408187 GAGCACTATC
408197 CATATCCATAAATATTTATA
1 CATATCCATAAATATTTATA
408217 CATATCCATAAATATTTATA
1 CATATCCATAAATATTTATA
408237 CATATCCATAAATATTTA
1 CATATCCATAAATATTTA
408255 ATCACTAGGC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.45, C:0.16, G:0.00, T:0.40
Consensus pattern (20 bp):
CATATCCATAAATATTTATA
Left flanking sequence: Indices 407697 -- 408196
AAGTGAGTCTCAGACCGTATGTAGTTCTCGGCTCTTTTTATACAGTTCCTGGCAGGTTCTTTTGT
GGCTCTTCACTCCAGCCCTGAAGTATTCTGTGAGCCCAATTTAACGTGGACCCTCCGTTATGAGA
CTTAAGTAAGGAAAGAGAGCGGTGAAAAGTATACATCCACTAAGTACCCTCATACTAGATAGTTG
ATTAAATCGAGAAAATTGAAGAGATCTTCTACAAGCCAACTAGAACCCCCCCTTAAAAGAACATC
GTAATAGGTATCTTGGAGGTGTCCTGGAATTAGAAAAGCCTCGTCTCCCATAACAGCCTGAATAA
GCTCGGGTATGCTCCACTCCGGTGGAAATTTCTTATTTGAGAGTAGAACCAACTCTGCGCATTTA
TCGCAGATTTCATGAAATAATAGGTCTAATTCAGGCGGAGCGCTTTCCGCGTCCGAAACAGTTTC
AGAAGGGGTCGAAGTGGATGCAGGGAACGAAAAAAGAGCACTATC
Right flanking sequence: Indices 408255 -- 408754
ATCACTAGGCGTTGGATTACCATGAACTACTAATTTGTTGATTATTCATTTTTTTTTCTTTAGAA
AAAAATGATTCCCTCAATACAGCTTAACTCCGTCAAGCCTGTACGAGTAGTGAAGAAGTATAGAG
CACTTTGGTTGCTTGTTGACCAACGGAAAGCATGGGAGAAAAAAAGCCAGAATCTCTAATCTCTC
TCTAAAAAGAGATCATGGCGCTTCATGGCTTTTTCAAGCTGACGATATGGAGTGCTCTGGTATGT
ACCGGACTCCAGAATCCGCCTCAGATACAAAGTGTAAGTCCTTTGACTGAAGGCCTCTCCATTCG
GGTAGAACATCAATCCCCTGATCTGATCCCGCTTCGCGAGAATCGAATCAGGAGAAAAGCCCTTC
GCCACAAGTGCGGCTTCGATATGTTTTTCAATCTGCACTTGAGTATGCAGAAAGGGCTCTATGAT
TCGTTCCGAGCTCACTATTCCGATTAAGTGGGCGTTTAAGCGCCT
Found at i:408251 original size:10 final size:10
Alignment explanation
Indices: 408198--408251 Score: 54
Period size: 10 Copynumber: 5.4 Consensus size: 10
408188 AGCACTATCC
408198 ATATCCATAA
1 ATATCCATAA
** *
408208 ATATTTATAC
1 ATATCCATAA
408218 ATATCCATAA
1 ATATCCATAA
** *
408228 ATATTTATAC
1 ATATCCATAA
408238 ATATCCATAA
1 ATATCCATAA
408248 ATAT
1 ATAT
408252 TTAATCACTA
Statistics
Matches: 32, Mismatches: 12, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
10 32 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.39
Consensus pattern (10 bp):
ATATCCATAA
Left flanking sequence: Indices 407698 -- 408197
AGTGAGTCTCAGACCGTATGTAGTTCTCGGCTCTTTTTATACAGTTCCTGGCAGGTTCTTTTGTG
GCTCTTCACTCCAGCCCTGAAGTATTCTGTGAGCCCAATTTAACGTGGACCCTCCGTTATGAGAC
TTAAGTAAGGAAAGAGAGCGGTGAAAAGTATACATCCACTAAGTACCCTCATACTAGATAGTTGA
TTAAATCGAGAAAATTGAAGAGATCTTCTACAAGCCAACTAGAACCCCCCCTTAAAAGAACATCG
TAATAGGTATCTTGGAGGTGTCCTGGAATTAGAAAAGCCTCGTCTCCCATAACAGCCTGAATAAG
CTCGGGTATGCTCCACTCCGGTGGAAATTTCTTATTTGAGAGTAGAACCAACTCTGCGCATTTAT
CGCAGATTTCATGAAATAATAGGTCTAATTCAGGCGGAGCGCTTTCCGCGTCCGAAACAGTTTCA
GAAGGGGTCGAAGTGGATGCAGGGAACGAAAAAAGAGCACTATCC
Right flanking sequence: Indices 408252 -- 408751
TTAATCACTAGGCGTTGGATTACCATGAACTACTAATTTGTTGATTATTCATTTTTTTTTCTTTA
GAAAAAAATGATTCCCTCAATACAGCTTAACTCCGTCAAGCCTGTACGAGTAGTGAAGAAGTATA
GAGCACTTTGGTTGCTTGTTGACCAACGGAAAGCATGGGAGAAAAAAAGCCAGAATCTCTAATCT
CTCTCTAAAAAGAGATCATGGCGCTTCATGGCTTTTTCAAGCTGACGATATGGAGTGCTCTGGTA
TGTACCGGACTCCAGAATCCGCCTCAGATACAAAGTGTAAGTCCTTTGACTGAAGGCCTCTCCAT
TCGGGTAGAACATCAATCCCCTGATCTGATCCCGCTTCGCGAGAATCGAATCAGGAGAAAAGCCC
TTCGCCACAAGTGCGGCTTCGATATGTTTTTCAATCTGCACTTGAGTATGCAGAAAGGGCTCTAT
GATTCGTTCCGAGCTCACTATTCCGATTAAGTGGGCGTTTAAGCG
Found at i:409837 original size:31 final size:31
Alignment explanation
Indices: 409799--409860 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
409789 CCAATTCATT
409799 AGCCACCACCGAGTATTCTCTTTATATAGGC
1 AGCCACCACCGAGTATTCTCTTTATATAGGC
409830 AGCCACCACCGAGTATTCTCTTTATATAGGC
1 AGCCACCACCGAGTATTCTCTTTATATAGGC
409861 TGAGTTTCGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.29
Consensus pattern (31 bp):
AGCCACCACCGAGTATTCTCTTTATATAGGC
Left flanking sequence: Indices 409299 -- 409798
ACGAAAGGGACATGTGAGAATTTGGTCTTACTATACAACAAAAAAAACGGGACTTTCTTTCTCTA
CTTTACTTTATTTATATTCATGAAAAATATTCTTTTCAAATTTGCCGACGAGAAGAAAAACTTTT
TCTCTGAGAGAGGAGTTCTCCTTCTCTAAGAAGTCAGTCTTCCTCGAGAGAGATTCCCATTCTGT
ATGAGAGTTAAGTCGTTCTTGCATTTCCACTCGGGCTTGCTGCTTTAAGTTTCAAAAGCCCCGAA
AATGATCCGCTTGAGCGGTCTTAACATCTTCATAGAACGGGGAATTATGCCTCTCGGTACAGATA
CTTTTTAAGACCTCCCCGAGAGCGGAAGGACTTAATTCCATTTTATCGAGGTGGACTTTCACTCC
TCCAGTTAGATTATTCTGCTTTGTCTCACCCAGGCGGCCTACCCGCTTTCCTTTCGTTCAGCTGC
CCTCAACCGCGCCATAGGGACTTCTCAGTGCAAATCCAATTCATT
Right flanking sequence: Indices 409861 -- 410360
TGAGTTTCGGCCATGTTTTCGTATATCCAGCGATTCCAAAATTCGAGTTCTCTCTGGTCCTTTAC
TAATACATTCCCGCCTTGTTGGTCAAGTTCACTTTCCTTCTCATCCAAAAAGTCACAAAAAGCTT
CGGTAGGATTGTACGCAGCACCCTCTCTCAAGGCAGGATGCTGAGACAGAACCTCTTGAAAGAGA
GAATAGCAGGAATGCTTTTTCTCCCTGATCTGGAGATCCCTGTTCTCGAAGAACCGCAAATACTC
TTTTTGTGAGCAACAATTGGAGAGTGAATGTTTCACTTCCGACCAATATTCCCCCTTTCTTTTAT
CAAGCAGAAAAATTAAATAAATTTAGGCTGCCTGTAGAAGTTCATTTATCATAACGTCCTTTCCT
TGTATTGTATTAAATAAAAGCAAAAGCACTTTCTTTTAAGAATGTATCTGGTTCCATCTTTCTTT
CGTTAGTTAAGCCACTTTTTGCTAAAAATGATTGTAGTAATTCTG
Found at i:413473 original size:35 final size:35
Alignment explanation
Indices: 413427--413494 Score: 136
Period size: 35 Copynumber: 1.9 Consensus size: 35
413417 GGAACCTGTA
413427 GATATTACTTAAGTGGCGTAGCAGTTCTTCTTTAC
1 GATATTACTTAAGTGGCGTAGCAGTTCTTCTTTAC
413462 GATATTACTTAAGTGGCGTAGCAGTTCTTCTTT
1 GATATTACTTAAGTGGCGTAGCAGTTCTTCTTT
413495 CTTCTATATA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.22, C:0.16, G:0.21, T:0.41
Consensus pattern (35 bp):
GATATTACTTAAGTGGCGTAGCAGTTCTTCTTTAC
Left flanking sequence: Indices 412927 -- 413426
TTCGCGAGACCTTTTCGATCCACACTGGAGAAGTCCTCTCTCGGGCTAGGCTCTATTGGGCGGAG
GATCACCTTTCTTTACTAGAGGAGCAGGAAAGAAGACACTTACATACGTAATTCTAGAGGTGAAC
CAGCTTGGTCGGTAGAATTTTGTCGAATCTAGCAAAAGGAAGGAAATGATGCTTTTCTTAAGGCA
ATCCATAAGTCAGAAATAGAATGAGGAAGAGAGAGGACCCCTCGGAATGGTATGTGGGCCTTCCT
CAAGCAATCCCCTATGACTCAACCTTTGTTCTTGGACAACAAACAACTAGGCAACAGCTAGCAAC
AGCTTGCCTTATAATAGTAGTTGCTAGTCGTCTCATTGTTGTCCTGTGCTCTGTAACGACATGTC
CGGGCACCCGAGATTAGTAGTTGCGTCTCGTCTCATTTCCTTACTTCTTGCCTTATAATAGAATA
GTGAAATTCGAATAGGCTGAGAAAAGCGCTAAGAGGGAACCTGTA
Right flanking sequence: Indices 413495 -- 413994
CTTCTATATAGTTCTAAGGAGAGTTGCGTAGCAGTTCTTCTTATTCCCCGACTCCGTTACTTTTA
TATAATAGAGTCAAGTGGCGTAGCTGTTCTAAGTTTATAGTCTCGTTTCGTTACTGTTACTTAAG
AGATTACTTTCTTAGTAGTTGCTTCCACTCCTTATAGTTCAAACTGGAATTCGAGTTTCTAGTTG
AGTTGCGTTTAAGTTCTAAGAAAACTATTACTATAAGTTGCTTTCAGCTCCTTTCTTAGCAGGAA
AGTGGCGTAGCTGTTCTAAGTTTATAGTCGAGTTGCTTCGCTCCTTTCAAAGGCATGGAACGCCC
TTCCCCACTCCTCTCCTGTAAGTAAAGCTAAAGCTCCTTTCCCTGCGGAATAAAGAAAAGTGGCT
CCGCGCCTCTCACATTCGTTCGAGTTGCTAAAGCTCCTCTCCTTGCAGGTTCCACTCCTCTCCTT
ACTTATAGGAAAGCGAGCGGTCAACACTCCTGAAAGCGGCTTTCA
Found at i:415501 original size:20 final size:20
Alignment explanation
Indices: 415473--415547 Score: 71
Period size: 20 Copynumber: 3.6 Consensus size: 20
415463 TATAAACTTA
*
415473 GAACTGCTACGCTTCAATTC
1 GAACAGCTACGCTTCAATTC
* *
415493 GAACAGCTACGCAACTCTC-CTTA
1 GAACAGCTACG---CT-TCAATTC
*
415516 GAACTGCTACGCTTCAATTC
1 GAACAGCTACGCTTCAATTC
415536 GAACAGCTACGC
1 GAACAGCTACGC
415548 AACTCTCCTT
Statistics
Matches: 43, Mismatches: 7, Indels: 10
0.72 0.12 0.17
Matches are distributed among these distances:
19 2 0.05
20 25 0.58
23 14 0.33
24 2 0.05
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.24
Consensus pattern (20 bp):
GAACAGCTACGCTTCAATTC
Left flanking sequence: Indices 414973 -- 415472
CACGAGACTATAAGGAGAGGAGCGAAGCTGCTTGAACGAGACTGTAAAGAGAGGAGTGGAAAAGC
CTTATCTTGCTTGCTCTTCGTGGCCGTCAGAGACTGATACGCGCTCGCTACGGAAAAACAAAGAA
GTTGAGCAGCTTCCCGCATCAGGCACTAATCAATTTTGAACGTCTAATTAGATCGGGAATCATTC
AAATTGAGAACAAAAGCTCCTTGCTTTTTCTTTCCCTAGAATTTCATTGAAGCCGCAGCCCTATC
CATTTATTCATTCGACCCAACTTGATTTTGTTCCGTTCCAAGAATTCTAACACTGTTTTATACCC
TCAATGAAATTTGTGAAGAACTTTACGTTGATACGACATGCTATTTTGACCATTCATTCCCTTTC
AGGATCAGTCGTGGTCTTCCAAACTTTACCGAGAGTATGGACGAATCCCTCACTTCATCCGCTTG
ATACGGGAATATGTGGGAAGATGAAGCAACGAGACTATAAACTTA
Right flanking sequence: Indices 415548 -- 416047
AACTCTCCTTAGAACTGCTACGCTTCTATTATTACTTGTGTTATCATTTGATAACAATTGCTTTT
GTTAAGTAATTTCTTATTCTTTATAATACGATAAAGAAAGAGAGAAAGTTGATTAGAAAGCGTTA
ACAAGACTACTTGCATTTCCCTCTTTGAGTTGGCCTAGTATCTCAATGACGAATTGCATGTGTTA
AGCATAACATTGGGTTCACTTAGAAATCTTCCAGTCGTGCTTAAAAGACGGCTTTTTGACATGCT
TTTCTCCTCGATTGACAAAAGATGTTTACTTAAGGAATTACTTTCCAAGCAGGTCTTCGAAATGA
CCTCTTCCGAATGAGTGATCCAAAATTCTCGGAGTTTAGCAACTCGATAGTACGTCGAATTTTGG
ATTGCACGAGAAAGGAAAAGAAAGGGCGAATAGTTCAATTAGAATCAACGAATAGTTCAATTAGA
ACTGCGTAGCAACTATACTATAAACTTAGAACAGCTACGCCACTC
Found at i:415524 original size:23 final size:23
Alignment explanation
Indices: 415493--415570 Score: 83
Period size: 23 Copynumber: 3.5 Consensus size: 23
415483 GCTTCAATTC
415493 GAACAGCTACGCAACTCTCCTTA
1 GAACAGCTACGCAACTCTCCTTA
* * *
415516 GAACTGCTACG---CT-TCAATTC
1 GAACAGCTACGCAACTCTC-CTTA
415536 GAACAGCTACGCAACTCTCCTTA
1 GAACAGCTACGCAACTCTCCTTA
*
415559 GAACTGCTACGC
1 GAACAGCTACGC
415571 TTCTATTATT
Statistics
Matches: 43, Mismatches: 7, Indels: 10
0.72 0.12 0.17
Matches are distributed among these distances:
19 2 0.05
20 14 0.33
23 25 0.58
24 2 0.05
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.23
Consensus pattern (23 bp):
GAACAGCTACGCAACTCTCCTTA
Left flanking sequence: Indices 414993 -- 415492
AGCGAAGCTGCTTGAACGAGACTGTAAAGAGAGGAGTGGAAAAGCCTTATCTTGCTTGCTCTTCG
TGGCCGTCAGAGACTGATACGCGCTCGCTACGGAAAAACAAAGAAGTTGAGCAGCTTCCCGCATC
AGGCACTAATCAATTTTGAACGTCTAATTAGATCGGGAATCATTCAAATTGAGAACAAAAGCTCC
TTGCTTTTTCTTTCCCTAGAATTTCATTGAAGCCGCAGCCCTATCCATTTATTCATTCGACCCAA
CTTGATTTTGTTCCGTTCCAAGAATTCTAACACTGTTTTATACCCTCAATGAAATTTGTGAAGAA
CTTTACGTTGATACGACATGCTATTTTGACCATTCATTCCCTTTCAGGATCAGTCGTGGTCTTCC
AAACTTTACCGAGAGTATGGACGAATCCCTCACTTCATCCGCTTGATACGGGAATATGTGGGAAG
ATGAAGCAACGAGACTATAAACTTAGAACTGCTACGCTTCAATTC
Right flanking sequence: Indices 415571 -- 416070
TTCTATTATTACTTGTGTTATCATTTGATAACAATTGCTTTTGTTAAGTAATTTCTTATTCTTTA
TAATACGATAAAGAAAGAGAGAAAGTTGATTAGAAAGCGTTAACAAGACTACTTGCATTTCCCTC
TTTGAGTTGGCCTAGTATCTCAATGACGAATTGCATGTGTTAAGCATAACATTGGGTTCACTTAG
AAATCTTCCAGTCGTGCTTAAAAGACGGCTTTTTGACATGCTTTTCTCCTCGATTGACAAAAGAT
GTTTACTTAAGGAATTACTTTCCAAGCAGGTCTTCGAAATGACCTCTTCCGAATGAGTGATCCAA
AATTCTCGGAGTTTAGCAACTCGATAGTACGTCGAATTTTGGATTGCACGAGAAAGGAAAAGAAA
GGGCGAATAGTTCAATTAGAATCAACGAATAGTTCAATTAGAACTGCGTAGCAACTATACTATAA
ACTTAGAACAGCTACGCCACTCTTGCCCCTTCTTCCACTAGTCTT
Found at i:415530 original size:43 final size:43
Alignment explanation
Indices: 415469--415573 Score: 210
Period size: 43 Copynumber: 2.4 Consensus size: 43
415459 AGACTATAAA
415469 CTTAGAACTGCTACGCTTCAATTCGAACAGCTACGCAACTCTC
1 CTTAGAACTGCTACGCTTCAATTCGAACAGCTACGCAACTCTC
415512 CTTAGAACTGCTACGCTTCAATTCGAACAGCTACGCAACTCTC
1 CTTAGAACTGCTACGCTTCAATTCGAACAGCTACGCAACTCTC
415555 CTTAGAACTGCTACGCTTC
1 CTTAGAACTGCTACGCTTC
415574 TATTATTACT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 62 1.00
ACGTcount: A:0.27, C:0.32, G:0.14, T:0.27
Consensus pattern (43 bp):
CTTAGAACTGCTACGCTTCAATTCGAACAGCTACGCAACTCTC
Left flanking sequence: Indices 414969 -- 415468
ACGCCACGAGACTATAAGGAGAGGAGCGAAGCTGCTTGAACGAGACTGTAAAGAGAGGAGTGGAA
AAGCCTTATCTTGCTTGCTCTTCGTGGCCGTCAGAGACTGATACGCGCTCGCTACGGAAAAACAA
AGAAGTTGAGCAGCTTCCCGCATCAGGCACTAATCAATTTTGAACGTCTAATTAGATCGGGAATC
ATTCAAATTGAGAACAAAAGCTCCTTGCTTTTTCTTTCCCTAGAATTTCATTGAAGCCGCAGCCC
TATCCATTTATTCATTCGACCCAACTTGATTTTGTTCCGTTCCAAGAATTCTAACACTGTTTTAT
ACCCTCAATGAAATTTGTGAAGAACTTTACGTTGATACGACATGCTATTTTGACCATTCATTCCC
TTTCAGGATCAGTCGTGGTCTTCCAAACTTTACCGAGAGTATGGACGAATCCCTCACTTCATCCG
CTTGATACGGGAATATGTGGGAAGATGAAGCAACGAGACTATAAA
Right flanking sequence: Indices 415574 -- 416073
TATTATTACTTGTGTTATCATTTGATAACAATTGCTTTTGTTAAGTAATTTCTTATTCTTTATAA
TACGATAAAGAAAGAGAGAAAGTTGATTAGAAAGCGTTAACAAGACTACTTGCATTTCCCTCTTT
GAGTTGGCCTAGTATCTCAATGACGAATTGCATGTGTTAAGCATAACATTGGGTTCACTTAGAAA
TCTTCCAGTCGTGCTTAAAAGACGGCTTTTTGACATGCTTTTCTCCTCGATTGACAAAAGATGTT
TACTTAAGGAATTACTTTCCAAGCAGGTCTTCGAAATGACCTCTTCCGAATGAGTGATCCAAAAT
TCTCGGAGTTTAGCAACTCGATAGTACGTCGAATTTTGGATTGCACGAGAAAGGAAAAGAAAGGG
CGAATAGTTCAATTAGAATCAACGAATAGTTCAATTAGAACTGCGTAGCAACTATACTATAAACT
TAGAACAGCTACGCCACTCTTGCCCCTTCTTCCACTAGTCTTAGA
Found at i:417277 original size:27 final size:27
Alignment explanation
Indices: 417239--417294 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
417229 TTCTTGCCTT
**
417239 CTAATAGAATAGTTCAATTCGAATAGG
1 CTAATAGAATAGTGAAATTCGAATAGG
417266 CTAATAGAATAGTGAAATTCGAATAGG
1 CTAATAGAATAGTGAAATTCGAATAGG
417293 CT
1 CT
417295 GAGAAAAGCG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.41, C:0.11, G:0.20, T:0.29
Consensus pattern (27 bp):
CTAATAGAATAGTGAAATTCGAATAGG
Left flanking sequence: Indices 416739 -- 417238
TCGCTCCTCTCCTTTTTATTCAAACGGCTTCCACCCCTCTCGCATTCGCTCGAGCAGCTAAAGCC
CCTTCTTTCAAAAATCAACAAAGAGCGCTAACGAGCAAGAAAAGGGATGCGCTAAGGCAAGCTAC
GCTGTTCTAAGGCGAGTAGCTTTCCACGCCCTTCCTTTTAAAGCGCCTTGTGGAATAGTTCTATT
AGATGATGTCGCTTCCTTACTCTAACAAGTAAGCAAATAAACTCCCTTCCTCTAACAAGTAAGTC
TTTCTCCTTGTGGAATAGTTCAATTCGAACTGCTACGCTGTTCTTCTTATTCCCCGCCCCCTCTC
CAACCAGTCAAGTGGCTGAACGCCCTTCTCACATTGGAACGCCTTTCCTTACAGGAAAGATAACA
CCCAATTTGCGATGCTTTTAAGCCCCCTTTCCGAACTCTAATGTGAGATTGGTAATGAGGGAGGT
TTAAGCCGTGTTAAATGTCCCGCAAATGGCCTTACTTCTTGCCTT
Right flanking sequence: Indices 417295 -- 417794
GAGAAAAGCGCTAAGACTTAAGCACAAGAACTTGACTTTCTTCATTTCAGGTCGAGAAGGCACCT
CAAAATCGCTTTAGAAGCCAGATTAGGGCTGAGGATGCTACCAGATCTTTTCCTCTGCTGCGTGC
CGCTTTGCTGCCTTCGAAAGAGTGGTTGAAGCTCGCGCTTTTATAAGAGCAATGGTTTTGTAAAC
GAGTCATTTTTCTAGGACTTGCTTCCTTACTCTAACATTCGTTCGAGCAGCTTTCAGCTTCTTTC
CGACGCAGTCAAGTGGCGTAGCTGTTCTAAGGAGAGTTGCGTAGCAGTTCGAATTGAACTATTCT
ATTATAACAGAATCGTCATTCTCCTTAGCTTTTGTTAAGTAATTTCTATCGCTTAACTCGTTCCT
TCCTTGCTTGACTGCCTTTTCACACTCATACTAGGAAGAGCAAAATTCACTCTTTACTGAGGTGA
ATCTCTTTTGTCAAGGGCTCAAGCGCAAAGAAGAAGCGGGAGCTA
Found at i:419030 original size:38 final size:38
Alignment explanation
Indices: 418887--419026 Score: 253
Period size: 38 Copynumber: 3.7 Consensus size: 38
418877 ACGCCTTTAT
* *
418887 TATAAGTAAGGAGAGGAGTGGAAAGCAACTCTCTTGAC
1 TATAAGGAAAGAGAGGAGTGGAAAGCAACTCTCTTGAC
418925 TATAAGGAAAGAGAGGAGTGGAAAGCAACTCTCTTGAC
1 TATAAGGAAAGAGAGGAGTGGAAAGCAACTCTCTTGAC
*
418963 TATAAGGAAAGAGAGGAGTGGAAAGCTACTCTCTTGAC
1 TATAAGGAAAGAGAGGAGTGGAAAGCAACTCTCTTGAC
419001 TATAAGGAAAGAGAGGAGTGGAAAGC
1 TATAAGGAAAGAGAGGAGTGGAAAGC
419027 TACTTGCACT
Statistics
Matches: 99, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 99 1.00
ACGTcount: A:0.39, C:0.11, G:0.31, T:0.19
Consensus pattern (38 bp):
TATAAGGAAAGAGAGGAGTGGAAAGCAACTCTCTTGAC
Left flanking sequence: Indices 418387 -- 418886
GCCTTGTTATAATAGAATAGTTCAATTAGTTGCGTAGCAGTTCTAATTAAAGAACTATTAGTAGC
GTAGCAGTTCTAAGTTTATAGTCTCGTTTCTAAAGCTTTCCACCCCTCTCCTTACAGTCGAGTGG
CTAAAGCCCCTAATTTCCCTTGTTAGGAAATGGTGTCCTAACCAATAGACTCGAGGGCCCGAGCT
CCCCGTCCCAGCCAATCTCCCTCCGGATGAAGTGGGGCCATCTGTCTAATGATTTCCACTTGAAC
CTCGAAGCGATCTTGAGCATCGATGCGAGCTTGTTCGATCTCTACGAAGGAAGGGGAAGGGGTCT
TCGCCAAAAGGCGAGACTTAATGGCGTTAACGCTATCCCCTCCGATCACTTCATCCATATGTGTA
AAAGACACTAGCCGCACTTAAAAGCCGAGTACTCTACCGTTGAGTTAGCAACGTACACGTAATCT
TTTAAAAAGCGTTCTGAGTGAATTATTTAAGCTCCACGCCTTTAT
Right flanking sequence: Indices 419027 -- 419526
TACTTGCACTTGCTTGACTATAAAGTTTGGAGAGGAGCGAAGCCACTTGACCGCAGGGAAAGGAG
CTGAAAGCCACTCTCTTGACTATAAGGAAAGAGAGGCGCGGAAGCTACTTGACTTTATTCTGCAA
GGAAAGGAGTTGAAAGCCACTCTCCTGTTAAGGAGAGGCGTGAAAAGCTATTTGAACTCGACTGT
AAGGAGAGGAAAAGTATGGATTAGTTGAAAGAGCTACTTCGTTCGAGCTGAATTACATCCACCCT
CTCACTTCGTTCGAGCTTCCTTTTCCCTCTCACCGCCCATGTTTGCAGAGACGAAAGGGAATCGG
TCAGGCCTAGCGCTTAAGGCTTCTAGCTCCCCGAACCTGAAGTGGAAGGAGAAAAGCTTTAAAAG
GAAAGGCGCGAAAAGCCATAAAAAGGAGAGGAGCGAAGGCCACTCGACTAACCAAGCAAGGGGTG
AGTGCGCTAGCGCGAAAGCCGTTGCCTTTACAACAGGGGTGAGCG
Found at i:426927 original size:19 final size:19
Alignment explanation
Indices: 426903--426942 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
426893 GGAGCGAGGG
426903 GCAGCAAGAAAACGTATGC
1 GCAGCAAGAAAACGTATGC
426922 GCAGCAAGAAAACGTATGC
1 GCAGCAAGAAAACGTATGC
426941 GC
1 GC
426943 GTTAGCGCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.40, C:0.23, G:0.28, T:0.10
Consensus pattern (19 bp):
GCAGCAAGAAAACGTATGC
Left flanking sequence: Indices 426403 -- 426902
TTGGTTGGGGCAGAGTTTCAGCCTGCCTTCCACCGAATATAAAAAACCTTAGAGCTGCCTAACCT
GCTGACATCCCGGCGAAGAGAGTCATTATTTGTGTTACATCTTCGAATTCGAGAGAGGGCTTTCC
TCTTATCTCTCAAATTATAGGCATTGAAGCGATCGAGAGAAAGTAAGAAAACTATTGCACACGCC
CCCCATTCGCCCTTTACTAATATAATAGAAGGTAAGGCAAAAGCAAGAGTGAAACTACGCGCTAA
AAGCAGGCGTGCCTCTCTTATAAGAGAATATGATACCATCCCCCACTTTTGGCGCACTTGTTTGA
TGAGCTAAGCCTAAGCGCCATATAAGTCAAAAGCTAGCCTGAGACCTAAAAAAGCAAGGTCGAAA
TCCATCCCTCTTTTTCCTTGACTAGTAGGGCTAATGAACGACCCTTTGATCTATGTCGTTCCAAG
TTCAGCCAGGTCTGATTAGAAGTTCCAAAATGAGTGGAGCGAGGG
Right flanking sequence: Indices 426943 -- 427442
GTTAGCGCAACGGCTTTCGCGCTAGTGCGCTCATCCGCTGCTTCTTGCTTTAGGCTTTCGCGCTA
GTGCGCCCTTGCTTCTTTAAAGTAAAGGCAACGGCTTTCGCGCTAGTGCGCTCTTGCTTCTTGCT
TTAGGCTTTCGCGCTAGCGCACTCAATCGTTGCTTGGTGCGCAACGGCTTTCGCGCTAGTGCGCT
TACCCGCTGCTTGGTGGACAGAAAAAAATTGCAGTCAGTTTGATAATGATCGAGTGACATTGCTT
CTTCGGCCCGAACCGAGGAATCCCTTAGATATGATGCAAAACGGATCTTGTTCTATCCTTGATCA
GAGATTTCTCTATGAAAAATACGAATCGGAGTTTGAAGAAGGCGCCCTTGACCCTAACCTTGACC
CGCAACAGATAGAGGAGGATTTATTCAATCACATAGTTTGGGCTCCTAGAATATGTCGCCCTTGG
GGCTTTCTTTGTATCGAAAGGCCCAATGAATTGGGATTTTCCTAT
Found at i:429125 original size:19 final size:19
Alignment explanation
Indices: 429101--429139 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
429091 TTCCTACGTC
429101 GGACTCACTCTTCTT-TTTT
1 GGACTCACT-TTCTTCTTTT
*
429120 GGACTCTCTTTCTTCTTTT
1 GGACTCACTTTCTTCTTTT
429139 G
1 G
429140 ATCTCAATGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.08, C:0.26, G:0.13, T:0.54
Consensus pattern (19 bp):
GGACTCACTTTCTTCTTTT
Left flanking sequence: Indices 428601 -- 429100
TTCGTCTAGTAAGATTAGATCCGACCCGAGAACTGTAGTGCGAAAGGTGCTAGCTAAGAAGTAGA
CCCCTCATCGCCCTAATGCTTAATCTCCTGGGATTGGGGAGGATGCCATTTATAGATCTGCTAAC
TTGAGGCCTAGCCTAGCTTTTCACGAGAGACAAGACGCTTCCTGCTCGCCCTACTTACTCTCTTT
TTAATCTTGCCCTTCCCTTCTGGATTTGGTGAAAAAAGAAGCCATTCGCCCACTCAGACACATTA
GGTCTTACACTGCGTAATTGAATATATAAGACTCTCTTCTAAGCCATTTCCAACGACATCCTCTC
ATGTGTGATTAGGCCTTCAACAAGAAACTAGCAAAATAATGATGAATTGGGGGCATCTTTACTAA
CATAGGTGGAGACACTTGTATCAAGCCCCCGAGCTGCGGCTCCTCGAAATCTTGTAAGAGAATAA
AGGACTTTTCGGGCTGTTTGAAAAGGAAGCGGCTCTTCCTACGTC
Right flanking sequence: Indices 429140 -- 429639
ATCTCAATGTGTCGACAGCCGAACAGGCGGGTGAATGAGATGGAAATAAATAAATAAAAGCAGGA
GTTAGCAGACCTGCTCTAGAGCCCCTTATTAGAAATGAGGAAGGGAAAGATCCTGGGATCCACTT
TGAATAGAGAAAGTCCCCTCCACAACTACAATGGTAGAGCTAGCTACTGATCAGTCGAATTGGCA
GCAAAGAGGCACGGGAAGAAGGAGAAAAGAAAGTAGTTGCTTCTGAAAGAAGTAGGGGGCGTGTA
GGAGTGAATCCATATTCATTTCAAGGAGTATCTTACCAAATCTTTCAACATCACAAATGAAGAAA
TTATCTTACTTCAATAATTAGTAATTTAAAAAAATTGACAATTTCAGCTATAATAATTTAGAATA
ATTATTTGCACAATTGTTTTGTCATAAGAATACTATTCCTGTAGTCAAAATCGGGACTTTAATCG
AGAAATTGGAGAAGGAAGTGCGAAATCAATCACTGCGAATCTACA
Found at i:434316 original size:19 final size:19
Alignment explanation
Indices: 434292--434328 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
434282 CGGGAAAGGA
434292 AATATAAATATATATATAT
1 AATATAAATATATATATAT
* *
434311 AATATATATTTATATATA
1 AATATAAATATATATATA
434329 ACATAACCGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
AATATAAATATATATATAT
Left flanking sequence: Indices 433792 -- 434291
CTAAAGCTCATCGGCCCATTTTAGTAAGGGGACGCCCCACACATTCCCTTCCTACGGGGAAACCT
CATGAGCCCATTTCCACTAATAGACAAGCCACAATTCGAAAGTTATGCATTCTCCGGAACCGGAG
AAACTAAGCAAAAATAGGCTTTTTCAAGGCTCGTCCTCCTCTTCACAATCTCTTGTCGGCGTTAC
ATTATTAGGAGGCCTTACGACTGCTCTTTTCCACTTATTATGATTAACTAATAATAAGATGGTTA
CACTGTCCTTCCCTTGCTTTCGGGCGATTCTTCTTGGCCACTCTATTAAAGTTTCGCATCTCGAA
AACTAGAAAGCGGTTTAACTTAACGATTGCGCTTCGCATCTTGGCGGGGTAGAAGGACTAATTCA
GTCTATTGGGACCTAGAGGCGATCTAAATCGAGTTAGTTACTTTACCGAGGAAGGGAAAACCATT
CTTACTACTCCTTTGTCCTCCTTCTTCTAGGCTTTCGGGAAAGGA
Right flanking sequence: Indices 434329 -- 434828
ACATAACCGGCTGGCTGCTTTTTATTATGCATTATGCAAAAAAAAAGACAAAATGGGATTGGATT
TGAAAGCAAGCCTTGGAATTTTGAGCAGTTTGACAAGGATCGACAGGAGGGAAGCTTATTCCCAT
TTCCATCCACCACAGGAAGAGTCCGAAGACACCTTCTTCCTTTTGATTACGAGATTTCCCGGGGA
TACTGCACCTAAGACCCAGCAGGAAAGATTTCGTTGATGGAGTCTAACAGGGAGTTAGCACGCAG
AGCCTCAAGCTGGATTTGTAGAAGCTTTCAAGATCGGATTGGAATCTCGGATCGTTGATCACTGA
TCGCAGAGTTGCGCCATCAGCATAGCCTCTCTGACCATATCCATTACTGACCCCGTATTCACTTA
CTGTACTTGGAACGGAAGAGTTGCAAGCTGTCAGCTAGGAAGATCCTCATTTGGTAAAGCATAGG
GCACCACACTCCGACACGCCGGTCGCCACCCCTGCTCTTTCTTTT
Found at i:448680 original size:17 final size:17
Alignment explanation
Indices: 448658--448693 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
448648 AAACTAAAGC
448658 GCAGCAAGAAAACGTAT
1 GCAGCAAGAAAACGTAT
448675 GCAGCAAGAAAACGTAT
1 GCAGCAAGAAAACGTAT
448692 GC
1 GC
448694 GCGTTAGCGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.44, C:0.19, G:0.25, T:0.11
Consensus pattern (17 bp):
GCAGCAAGAAAACGTAT
Left flanking sequence: Indices 448158 -- 448657
TCTCCAAACCAAGATGTACGCACGACTTTCTTTCCGGTTGAGTGCGCTATGAAGATCTAGTCAAA
AGCTTGAACTTGCACGAGATTCGCAGATGATCGAGGATTCCTTTCTCTTTTTTCCTTTGATTTTC
ACGCTTTGACTATTTGGAGATAAGAATCACTCAAGGGGCCCATAACACTATAGTTTTCATTTACT
AAAAAGACTGAAATTGATTCACTTCGCTAGCAAAATCTCGGTAGGAGAAGAACTCTATTCGTTGC
AAACTCTATTCCATTCATCCTACTTCGATGCAAGCCCAATAGCTAAAAGAGCCCCCCTTCCATCA
ATAGGTACTCCCAAGCCATCGACCACACGCCCTAGCTAGAAAGTTAGTTCCAGTTTCGTTGCCTA
GCTCTTCTTCAACTAGAAACTTAACGGGAATCGTTTTCTTGTCCTCGCTTCGTTACTTAAGAGAT
TACTTTCCGCCCCAGCAAGAGTATGCGCAGCAAGAAAACTAAAGC
Right flanking sequence: Indices 448694 -- 449193
GCGTTAGCGCAACGGCTTTCGCGCTAGTGCGCTCATCCGCTGCTTCTTGCTTTAGGCTTTCGCGT
GCGCTCACCCCTTGCTTCTTTAAAGGCAACGGCTTTCTTAGTTAGCACTCACCCCTTGCTTGGTT
AGTCGAGCAGTTTCACCCAGCAATCAAACTAAAGCTGCAAGACAACTTATATGACTAAGGCGCAA
CGGCTTTCTAGCTAGGGCGCCCTTGCTTCTTTCCTTTCATCCACTTTCCCCCCTTGCTTGTTCCC
TTCATCAACTTGAATCAAGCAATCAAACTAAGGCGCTACGGCTTTCGCTTACCCCTTGCTTCTTA
CTTTCTTTACTTTGTTCTATAAGTGTTTGTTCTATGAGGAAGAACAGCTACGCAACTCTCCTTCC
TTAATAGTAAAGAACTCACTTAACCGCAACGAGACTAAGCAAGCAAGAAAGCTAAAGCGCGCAGC
AAGAACCCGTATACAGCAAGAAAACGTATACAGCAAGAAAACGTA
Found at i:449167 original size:17 final size:17
Alignment explanation
Indices: 449145--449194 Score: 82
Period size: 17 Copynumber: 2.9 Consensus size: 17
449135 CTAAAGCGCG
**
449145 CAGCAAGAACCCGTATA
1 CAGCAAGAAAACGTATA
449162 CAGCAAGAAAACGTATA
1 CAGCAAGAAAACGTATA
449179 CAGCAAGAAAACGTAT
1 CAGCAAGAAAACGTAT
449195 GCGCTCCACT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 31 1.00
ACGTcount: A:0.48, C:0.22, G:0.18, T:0.12
Consensus pattern (17 bp):
CAGCAAGAAAACGTATA
Left flanking sequence: Indices 448645 -- 449144
AGAAAACTAAAGCGCAGCAAGAAAACGTATGCAGCAAGAAAACGTATGCGCGTTAGCGCAACGGC
TTTCGCGCTAGTGCGCTCATCCGCTGCTTCTTGCTTTAGGCTTTCGCGTGCGCTCACCCCTTGCT
TCTTTAAAGGCAACGGCTTTCTTAGTTAGCACTCACCCCTTGCTTGGTTAGTCGAGCAGTTTCAC
CCAGCAATCAAACTAAAGCTGCAAGACAACTTATATGACTAAGGCGCAACGGCTTTCTAGCTAGG
GCGCCCTTGCTTCTTTCCTTTCATCCACTTTCCCCCCTTGCTTGTTCCCTTCATCAACTTGAATC
AAGCAATCAAACTAAGGCGCTACGGCTTTCGCTTACCCCTTGCTTCTTACTTTCTTTACTTTGTT
CTATAAGTGTTTGTTCTATGAGGAAGAACAGCTACGCAACTCTCCTTCCTTAATAGTAAAGAACT
CACTTAACCGCAACGAGACTAAGCAAGCAAGAAAGCTAAAGCGCG
Right flanking sequence: Indices 449195 -- 449694
GCGCTCCACTAAGGCGCAACGGCTTTCGCGCTAGTGCGCTCATCCGCTGCTTGTTGCGCAACGGC
TTTCTGCTTTTCATCCACTGGAATCTGCAACGGCTTTCTTCTTTCCCGTTTGCTTGTTGTATGCA
ACAAGAAAAGATTCCACTTAAGCAATGATCTTATCTATCTATGTCATTTCTCTTGACTTACTATT
TTGATAGAGGGGACTGAACACCAAGCCAATCTCGATAAGAAGCCAATCTCGATAAGCAGAAGTAC
GCTTCGCCTTTACTAAGCTGACGTTTGATTGCTGGGGCGTAGCGAAGCAAGCTGCTCGACAGAGG
TTAGTAGCGAAGCAAGCAGCTCGACCGTAAGGGAGAGGTTAGTAGCTGCTTGACTTCAAGGAAAG
GGGCCTAGCTCTTCCCCTCCGGTTAAACAAGAATGTTGAAACTAAAGCAGCAAGAAAGCCAACAA
GCAAGGATAACGATTGAGTGCGCGCATCCGAGCATATTAGAACAG
Found at i:449434 original size:17 final size:17
Alignment explanation
Indices: 449412--449445 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
449402 ACTGAACACC
449412 AAGCCAATCTCGATAAG
1 AAGCCAATCTCGATAAG
449429 AAGCCAATCTCGATAAG
1 AAGCCAATCTCGATAAG
449446 CAGAAGTACG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.24, G:0.18, T:0.18
Consensus pattern (17 bp):
AAGCCAATCTCGATAAG
Left flanking sequence: Indices 448912 -- 449411
TGCTTCTTTCCTTTCATCCACTTTCCCCCCTTGCTTGTTCCCTTCATCAACTTGAATCAAGCAAT
CAAACTAAGGCGCTACGGCTTTCGCTTACCCCTTGCTTCTTACTTTCTTTACTTTGTTCTATAAG
TGTTTGTTCTATGAGGAAGAACAGCTACGCAACTCTCCTTCCTTAATAGTAAAGAACTCACTTAA
CCGCAACGAGACTAAGCAAGCAAGAAAGCTAAAGCGCGCAGCAAGAACCCGTATACAGCAAGAAA
ACGTATACAGCAAGAAAACGTATGCGCTCCACTAAGGCGCAACGGCTTTCGCGCTAGTGCGCTCA
TCCGCTGCTTGTTGCGCAACGGCTTTCTGCTTTTCATCCACTGGAATCTGCAACGGCTTTCTTCT
TTCCCGTTTGCTTGTTGTATGCAACAAGAAAAGATTCCACTTAAGCAATGATCTTATCTATCTAT
GTCATTTCTCTTGACTTACTATTTTGATAGAGGGGACTGAACACC
Right flanking sequence: Indices 449446 -- 449945
CAGAAGTACGCTTCGCCTTTACTAAGCTGACGTTTGATTGCTGGGGCGTAGCGAAGCAAGCTGCT
CGACAGAGGTTAGTAGCGAAGCAAGCAGCTCGACCGTAAGGGAGAGGTTAGTAGCTGCTTGACTT
CAAGGAAAGGGGCCTAGCTCTTCCCCTCCGGTTAAACAAGAATGTTGAAACTAAAGCAGCAAGAA
AGCCAACAAGCAAGGATAACGATTGAGTGCGCGCATCCGAGCATATTAGAACAGTAGCGAATGCA
GCCTGGCTACTCTACTACCGCGCAACGTCTTGCTTGGTTAGTCTCGTGGCTTAAGGCTCCTTTCC
TTGCAGTCAAGTGGCTGAACGCCCCTCTCCTTTCATCCTCTTTCTACAACTTGAATAAGGAACTT
AAAGCCGAAAATGGGTCCTTTAAAGCGCAACTACTTGAATAAGAAAACGGATGCGCGAAGCATTA
CTACCCCTTGCTTAAGTAAGAACCGGAGGGGAACGAAGCGGAGGA
Found at i:471464 original size:19 final size:19
Alignment explanation
Indices: 471440--471477 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
471430 CACTTGACTA
471440 AGCAAGAAAACGTATGCGC
1 AGCAAGAAAACGTATGCGC
471459 AGCAAGAAAACGTATGCGC
1 AGCAAGAAAACGTATGCGC
471478 GTTAGCGCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.21, G:0.26, T:0.11
Consensus pattern (19 bp):
AGCAAGAAAACGTATGCGC
Left flanking sequence: Indices 470940 -- 471439
TGGTGAAAGTGGGTTCTGGTCCAGATTCCTGGATAGGTTGTGTTTCACCCGGTGTAATTGATAAG
TCGATGTATCAACACAGCCCCCTTTGAAGTCTTAGTGTTCCGAATGCTTATTTCTCAAGCAGTAG
GAGAAAGCCCGTACTTTTTCATTATACCAGCGGAAGCTCCGGGTAGATTTTTTCCACCAGCTGCA
GCAGCTGTCGATTGATAGGCGACCCTATCTCTATTCAGAAGGAGGAGTGGTCATCGAATAAGGTT
TCCTTTCCTGTACTTTTTTGAATTTCCCTATTTGATCTAGTAAGGGGAAAGGCAGACCGCTTACC
ATAAACAGAAGATCGATATCGCACAGAAGGCCTGATATCGCCCTATTTGAGATACTGATTCAAGT
TATAGTACTTCCTCAGAGCGATTGAACTAGCCTTTTGACTAAATAGATATGGGCATAGAGAGGGA
ATCCTGAACTACAGGAAAAAAGGAGAGCTACTTGCCACTTGACTA
Right flanking sequence: Indices 471478 -- 471977
GTTAGCGCAACGGCTTTCGCGCTAGTGCGCTCATCCGTCTTGCTTTAGGCTTTCGCGCTAGTGCG
CTCACCCCTTGCTTAAAGTAAAGGCAACGGCTTTCGCGCACTCACCCCTTGCTTGGTTAGTCGAG
TGGCCTTCGCTCCTCCAGTTCTATTATTATTGACTTGACTTATTATTATAAAAACTACTCACTAT
CCAAATGAAAGACGATCGATTATCTACCCAAGAAGATAGAGAGTCCCACATACGAGAAAAGGTCA
CAAATAGAGTTGAACCAAGTAACATTGCAAAGGCATAATGATAGTAGGGTCGGGATATCCCCGCC
CTCCGAACCGGACGTGAGGGTCTCCCCTCATCCGGCTCTCTGCAGGGGAATCTCCACTCACTGCT
TCCCCTAATATCCTCCCTTTACCACATCATGGGGGTTTACAGGAGATCCCAGAGGCTCGCTCGGA
AAGGCTGCTATACCATACCTTTTGACTTAACTCTACTCTAGTAGT
Found at i:473549 original size:19 final size:19
Alignment explanation
Indices: 473525--473601 Score: 136
Period size: 19 Copynumber: 4.1 Consensus size: 19
473515 CCTCTCTTTC
* *
473525 CAGCAAGAAAAGGGATGCG
1 CAGCAAGAAAACGTATGCG
473544 CAGCAAGAAAACGTATGCG
1 CAGCAAGAAAACGTATGCG
473563 CAGCAAGAAAACGTATGCG
1 CAGCAAGAAAACGTATGCG
473582 CAGCAAGAAAACGTATGCG
1 CAGCAAGAAAACGTATGCG
473601 C
1 C
473602 GTTAGCGCAA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 56 1.00
ACGTcount: A:0.42, C:0.21, G:0.29, T:0.09
Consensus pattern (19 bp):
CAGCAAGAAAACGTATGCG
Left flanking sequence: Indices 473025 -- 473524
TCATTCAAAACTTGATCGAAAAACCAGCGTTTATTGAAGAAGCTATAGAGTCGATTACTAATAGT
ACTAGTTTGAAAGGCTCGTTGGAATTGATCCGCTACGGGATTAACATTATACGCAACATAAGCAC
CTGAAGTACTAAACGGAATAGGTATTAGTTTGGTAATGGTTGGAGCAGCAAACTCGGATTCGGCA
AGAATCTCATTTTTTGGTAGTACGAAGGGGGAATTGGCCCAAAAATTGGATGGGGGTCAAGACGC
TGCTGTCGGGCGCCGGCGGCTGACTCAAGTGCCCCCCGAACCGCGCGAAATGGTCGCCTATTACA
CGGCTCACTAACTCTGCCTGGGGTGTGGGTACCTATTATTCTTCGGGTAATGTTGCCGCGTATTC
CCAGACTATAGAATAGAGTCTGTCTTTCTCCTTTATCGAGGAGAATTTAAAGGAGCGTTCAGCAA
CTCTCTTTCCTTATAGTCAAGAGAGTTGCTCCGCTCCTCTCTTTC
Right flanking sequence: Indices 473602 -- 474101
GTTAGCGCAACGGCTTTCGCGCTAGTGCGCTCATCCGCTGCTTCTTGCTTTAGGCTTTCGCGCTA
GTGCGCTCACCCCTTGCTTCTTTAAAGGCAACGGCTTTCGCGCTAGTGCGCTCACCCCTTGCTTC
TTGCTTTAGGCTTTCGCGCTAGCGCACTCAATCGTTGCTTGGTGCGCAATGGCTTTCTTAGTTAG
CGCTTACCCCTTGCTTGGTTAGTAAAGGCGAGCGGCTTTCCGCTCCTCCTTTCTTTAATTCACAG
GCACAGGAGGTCAAATTCCGATTGTTGTGAAAGTTACTGAATGAATCTATTTCATTCTAATTCGA
TCTAAGAAGAAAAAAATCACGCTCTGTAGGATTTGAACCTACGACATCGGGTTTTGGAGACCCAC
GTTCTACCGAACTGAACTAAGAGCGCTTTCTTATCACAGTAGATACGACTGTAAAGAAAAAGGAT
TCCCCCAATACATCTTGCATGCATATAGTCTCATAAAATGAAAAT
Found at i:473670 original size:41 final size:41
Alignment explanation
Indices: 473613--473753 Score: 180
Period size: 41 Copynumber: 3.3 Consensus size: 41
473603 TTAGCGCAAC
*
473613 GGCTTTCGCGCTAGTGCGCTCATCCGC-TGCTTCTTGCTTTA
1 GGCTTTCGCGCTAGTGCGCTCA-CCCCTTGCTTCTTGCTTTA
*
473654 GGCTTTCGCGCTAGTGCGCTCACCCCTTGCTTCTTTAAAGGC--AA
1 GGCTTTCGCGCTAGTGCGCTCACCCCTTGCTTC-TT----GCTTTA
473698 CGGCTTTCGCGCTAGTGCGCTCACCCCTTGCTTCTTGCTTTA
1 -GGCTTTCGCGCTAGTGCGCTCACCCCTTGCTTCTTGCTTTA
473740 GGCTTTCGCGCTAG
1 GGCTTTCGCGCTAG
473754 CGCACTCAAT
Statistics
Matches: 88, Mismatches: 3, Indels: 18
0.81 0.03 0.17
Matches are distributed among these distances:
40 5 0.06
41 42 0.48
42 3 0.03
44 3 0.03
45 33 0.38
46 2 0.02
ACGTcount: A:0.10, C:0.33, G:0.24, T:0.33
Consensus pattern (41 bp):
GGCTTTCGCGCTAGTGCGCTCACCCCTTGCTTCTTGCTTTA
Left flanking sequence: Indices 473113 -- 473612
ATTGATCCGCTACGGGATTAACATTATACGCAACATAAGCACCTGAAGTACTAAACGGAATAGGT
ATTAGTTTGGTAATGGTTGGAGCAGCAAACTCGGATTCGGCAAGAATCTCATTTTTTGGTAGTAC
GAAGGGGGAATTGGCCCAAAAATTGGATGGGGGTCAAGACGCTGCTGTCGGGCGCCGGCGGCTGA
CTCAAGTGCCCCCCGAACCGCGCGAAATGGTCGCCTATTACACGGCTCACTAACTCTGCCTGGGG
TGTGGGTACCTATTATTCTTCGGGTAATGTTGCCGCGTATTCCCAGACTATAGAATAGAGTCTGT
CTTTCTCCTTTATCGAGGAGAATTTAAAGGAGCGTTCAGCAACTCTCTTTCCTTATAGTCAAGAG
AGTTGCTCCGCTCCTCTCTTTCCAGCAAGAAAAGGGATGCGCAGCAAGAAAACGTATGCGCAGCA
AGAAAACGTATGCGCAGCAAGAAAACGTATGCGCGTTAGCGCAAC
Right flanking sequence: Indices 473754 -- 474253
CGCACTCAATCGTTGCTTGGTGCGCAATGGCTTTCTTAGTTAGCGCTTACCCCTTGCTTGGTTAG
TAAAGGCGAGCGGCTTTCCGCTCCTCCTTTCTTTAATTCACAGGCACAGGAGGTCAAATTCCGAT
TGTTGTGAAAGTTACTGAATGAATCTATTTCATTCTAATTCGATCTAAGAAGAAAAAAATCACGC
TCTGTAGGATTTGAACCTACGACATCGGGTTTTGGAGACCCACGTTCTACCGAACTGAACTAAGA
GCGCTTTCTTATCACAGTAGATACGACTGTAAAGAAAAAGGATTCCCCCAATACATCTTGCATGC
ATATAGTCTCATAAAATGAAAATCTGTATGTCCAATTTGAATCGATCTCAATGGATCCCTCGTTA
CTGCCCAGAGGAGAAGAATAGGTAGGGATGACAGGATTTGAACCCGTGACATTTTTTACCCAAAA
CAAAGGCGCTACCTGCGCTACATCCCTTTCAATTGGTCTACAACA
Found at i:473770 original size:41 final size:41
Alignment explanation
Indices: 473613--473771 Score: 162
Period size: 41 Copynumber: 3.8 Consensus size: 41
473603 TTAGCGCAAC
*
473613 GGCTTTCGCGCTAGTGCGCTCATCCGC-TGCTTCTTGCTTTA
1 GGCTTTCGCGCTAGTGCGCTCAACC-CTTGCTTCTTGCTTTA
* *
473654 GGCTTTCGCGCTAGTGCGCTCACCCCTTGCTTCTTTAAAGGC--AA
1 GGCTTTCGCGCTAGTGCGCTCAACCCTTGCTTC-TT----GCTTTA
*
473698 CGGCTTTCGCGCTAGTGCGCTCACCCCTTGCTTCTTGCTTTA
1 -GGCTTTCGCGCTAGTGCGCTCAACCCTTGCTTCTTGCTTTA
* * * *
473740 GGCTTTCGCGCTAGCGCACTCAATCGTTGCTT
1 GGCTTTCGCGCTAGTGCGCTCAACCCTTGCTT
473772 GGTGCGCAAT
Statistics
Matches: 101, Mismatches: 8, Indels: 18
0.80 0.06 0.14
Matches are distributed among these distances:
40 3 0.03
41 57 0.56
42 3 0.03
44 3 0.03
45 33 0.33
46 2 0.02
ACGTcount: A:0.11, C:0.33, G:0.23, T:0.33
Consensus pattern (41 bp):
GGCTTTCGCGCTAGTGCGCTCAACCCTTGCTTCTTGCTTTA
Left flanking sequence: Indices 473113 -- 473612
ATTGATCCGCTACGGGATTAACATTATACGCAACATAAGCACCTGAAGTACTAAACGGAATAGGT
ATTAGTTTGGTAATGGTTGGAGCAGCAAACTCGGATTCGGCAAGAATCTCATTTTTTGGTAGTAC
GAAGGGGGAATTGGCCCAAAAATTGGATGGGGGTCAAGACGCTGCTGTCGGGCGCCGGCGGCTGA
CTCAAGTGCCCCCCGAACCGCGCGAAATGGTCGCCTATTACACGGCTCACTAACTCTGCCTGGGG
TGTGGGTACCTATTATTCTTCGGGTAATGTTGCCGCGTATTCCCAGACTATAGAATAGAGTCTGT
CTTTCTCCTTTATCGAGGAGAATTTAAAGGAGCGTTCAGCAACTCTCTTTCCTTATAGTCAAGAG
AGTTGCTCCGCTCCTCTCTTTCCAGCAAGAAAAGGGATGCGCAGCAAGAAAACGTATGCGCAGCA
AGAAAACGTATGCGCAGCAAGAAAACGTATGCGCGTTAGCGCAAC
Right flanking sequence: Indices 473772 -- 474271
GGTGCGCAATGGCTTTCTTAGTTAGCGCTTACCCCTTGCTTGGTTAGTAAAGGCGAGCGGCTTTC
CGCTCCTCCTTTCTTTAATTCACAGGCACAGGAGGTCAAATTCCGATTGTTGTGAAAGTTACTGA
ATGAATCTATTTCATTCTAATTCGATCTAAGAAGAAAAAAATCACGCTCTGTAGGATTTGAACCT
ACGACATCGGGTTTTGGAGACCCACGTTCTACCGAACTGAACTAAGAGCGCTTTCTTATCACAGT
AGATACGACTGTAAAGAAAAAGGATTCCCCCAATACATCTTGCATGCATATAGTCTCATAAAATG
AAAATCTGTATGTCCAATTTGAATCGATCTCAATGGATCCCTCGTTACTGCCCAGAGGAGAAGAA
TAGGTAGGGATGACAGGATTTGAACCCGTGACATTTTTTACCCAAAACAAAGGCGCTACCTGCGC
TACATCCCTTTCAATTGGTCTACAACAGTGTCATTGTAGAGAATC
Found at i:473770 original size:86 final size:86
Alignment explanation
Indices: 473608--473771 Score: 258
Period size: 86 Copynumber: 1.9 Consensus size: 86
473598 GCGCGTTAGC
* * *
473608 GCAACGGCTTTCGCGCTAGTGCGCTCATCCGCTGCTTCTTGCTTTAGGCTTTCGCGCTAGTGCGC
1 GCAACGGCTTTCGCGCTAGTGCGCTCATCCCCTGCTTCTTGCTTTAGGCTTTCGCGCTAGCGCAC
*
473673 TCACCCCTTGCTTCTTTAAAG
66 TCAACCCTTGCTTCTTTAAAG
473694 GCAACGGCTTTCGCGCTAGTGCGCTCA-CCCCTTGCTTCTTGCTTTAGGCTTTCGCGCTAGCGCA
1 GCAACGGCTTTCGCGCTAGTGCGCTCATCCCC-TGCTTCTTGCTTTAGGCTTTCGCGCTAGCGCA
* *
473758 CTCAATCGTTGCTT
65 CTCAACCCTTGCTT
473772 GGTGCGCAAT
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
85 3 0.04
86 68 0.96
ACGTcount: A:0.12, C:0.33, G:0.23, T:0.32
Consensus pattern (86 bp):
GCAACGGCTTTCGCGCTAGTGCGCTCATCCCCTGCTTCTTGCTTTAGGCTTTCGCGCTAGCGCAC
TCAACCCTTGCTTCTTTAAAG
Left flanking sequence: Indices 473108 -- 473607
TTGGAATTGATCCGCTACGGGATTAACATTATACGCAACATAAGCACCTGAAGTACTAAACGGAA
TAGGTATTAGTTTGGTAATGGTTGGAGCAGCAAACTCGGATTCGGCAAGAATCTCATTTTTTGGT
AGTACGAAGGGGGAATTGGCCCAAAAATTGGATGGGGGTCAAGACGCTGCTGTCGGGCGCCGGCG
GCTGACTCAAGTGCCCCCCGAACCGCGCGAAATGGTCGCCTATTACACGGCTCACTAACTCTGCC
TGGGGTGTGGGTACCTATTATTCTTCGGGTAATGTTGCCGCGTATTCCCAGACTATAGAATAGAG
TCTGTCTTTCTCCTTTATCGAGGAGAATTTAAAGGAGCGTTCAGCAACTCTCTTTCCTTATAGTC
AAGAGAGTTGCTCCGCTCCTCTCTTTCCAGCAAGAAAAGGGATGCGCAGCAAGAAAACGTATGCG
CAGCAAGAAAACGTATGCGCAGCAAGAAAACGTATGCGCGTTAGC
Right flanking sequence: Indices 473772 -- 474271
GGTGCGCAATGGCTTTCTTAGTTAGCGCTTACCCCTTGCTTGGTTAGTAAAGGCGAGCGGCTTTC
CGCTCCTCCTTTCTTTAATTCACAGGCACAGGAGGTCAAATTCCGATTGTTGTGAAAGTTACTGA
ATGAATCTATTTCATTCTAATTCGATCTAAGAAGAAAAAAATCACGCTCTGTAGGATTTGAACCT
ACGACATCGGGTTTTGGAGACCCACGTTCTACCGAACTGAACTAAGAGCGCTTTCTTATCACAGT
AGATACGACTGTAAAGAAAAAGGATTCCCCCAATACATCTTGCATGCATATAGTCTCATAAAATG
AAAATCTGTATGTCCAATTTGAATCGATCTCAATGGATCCCTCGTTACTGCCCAGAGGAGAAGAA
TAGGTAGGGATGACAGGATTTGAACCCGTGACATTTTTTACCCAAAACAAAGGCGCTACCTGCGC
TACATCCCTTTCAATTGGTCTACAACAGTGTCATTGTAGAGAATC
Found at i:476222 original size:37 final size:37
Alignment explanation
Indices: 476181--476316 Score: 141
Period size: 37 Copynumber: 3.6 Consensus size: 37
476171 GGTGAGTGCG
476181 CTAGCGCGAAAGCCGTTGCGCAAGAAGCAAGGGCGCA
1 CTAGCGCGAAAGCCGTTGCGCAAGAAGCAAGGGCGCA
* * *
476218 CTAGCGCGAAAGCCGTTGC-CTTTACAA-CAGGGGTGAGCGCA
1 CTAGCGCGAAAGCCGTTGCGC--AAGAAGCA--AG-G-GCGCA
* * * *
476259 CTAGCGCGAAAGCCGTTGCGCAAGACGGATGAGCGCA
1 CTAGCGCGAAAGCCGTTGCGCAAGAAGCAAGGGCGCA
476296 CTAGCGCGAAAGCCGTTGCGC
1 CTAGCGCGAAAGCCGTTGCGC
476317 TAACGCGCAT
Statistics
Matches: 82, Mismatches: 9, Indels: 16
0.77 0.08 0.15
Matches are distributed among these distances:
36 1 0.01
37 47 0.57
38 3 0.04
39 2 0.02
40 3 0.04
41 25 0.30
42 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.34, T:0.12
Consensus pattern (37 bp):
CTAGCGCGAAAGCCGTTGCGCAAGAAGCAAGGGCGCA
Left flanking sequence: Indices 475681 -- 476180
TATCCATAAAGAGAAAGAAAGTTTTCTTCTAGTTCCGCTTCCGCTTCTTGCTCTTCCAATTCAGA
AAGACTTGTCGGAAATCGCCGGTTGGGTTGGTCCGACCAAGAAAGGCATGGGACTTTTGGGCATT
GCTTGGGTCGAGCTAGGCTACCTAGTGATTTACAAGCACCCTCACTGCACACTTTCTATATATCT
GTCTCCATCCAATCAAAGACGTCCATGCCATAGAGAATCAGGCTCGGCAAAAACGAGACTAGGGA
CCATGCTCCCCGCTTTCTTCCTGTGGTTACTATTAGAACACAAGCCAAGGAACTAAAAACCACAA
CACAAGCACCCTTTATTTAATTTAAATTTAATTTACTAGTTTTGGAGTTTTCGCCCCGCGAAGGT
AAATAGTAAAAAAAGTTCCCCGTAGAACGCGAGCGTTGAGGCTTTCGTCGAAACAAAGAGAGAGG
AGCGAAAAGCCACTTGCTTGATTAACCAAGCAAGGGGTGAGTGCG
Right flanking sequence: Indices 476317 -- 476816
TAACGCGCATACGTTTTCTTGCTGCGCTTTAGTTTTCTTGCTGCGCATACTCTTGCTGGAAAGGG
GCATGTATCCTTTTTTTGTAAAGAAAGAGGGCTACTTCACGAGCCGCTACTAATAATTGAAAGGG
TTCACAGCGAGTTCAGTCTATAGTGACAAAGGGAACGTTTCCGCCGGAGGGGTTTGTCTCCATGG
AAAAAGTATTCACTACTGCTTACAGCGCCTTCATTCACTCGTCTTGCTACTTCGGAACAGTTCAG
CGGACACGTGGAGTCGAACGTCTCTCTACAATGTTGCGTAGGTAGACTGATTATTGTAGGTGACT
GTCTCTAGTGGTTTAGAAAGAGTTCTGTTGCTACCAACTTCTTTCTTTGTAGTCTAGTAGATCTA
CATGCTCTAGTGGATCTAAAGTAGGTTTATGTTCAGCAACAGAAAGAGGTGAGGTTCTGCTTTCT
TACCTGAGAATATTTACAAGGGGGAAGCCTCGAAAGGCATACGAG
Found at i:476297 original size:78 final size:78
Alignment explanation
Indices: 476168--476314 Score: 240
Period size: 78 Copynumber: 1.9 Consensus size: 78
476158 TAACCAAGCA
* * *
476168 AGGGGTGAGTGCGCTAGCGCGAAAGCCGTTGCGCAAGAAGCAAGGGCGCACTAGCGCGAAAGCCG
1 AGGGGTGAGCGCACTAGCGCGAAAGCCGTTGCGCAAGAAGCAAGAGCGCACTAGCGCGAAAGCCG
476233 TTGCCTTTACAAC
66 TTGCCTTTACAAC
* * *
476246 AGGGGTGAGCGCACTAGCGCGAAAGCCGTTGCGCAAGACGGATGAGCGCACTAGCGCGAAAGCCG
1 AGGGGTGAGCGCACTAGCGCGAAAGCCGTTGCGCAAGAAGCAAGAGCGCACTAGCGCGAAAGCCG
476311 TTGC
66 TTGC
476315 GCTAACGCGC
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
78 63 1.00
ACGTcount: A:0.25, C:0.26, G:0.36, T:0.13
Consensus pattern (78 bp):
AGGGGTGAGCGCACTAGCGCGAAAGCCGTTGCGCAAGAAGCAAGAGCGCACTAGCGCGAAAGCCG
TTGCCTTTACAAC
Left flanking sequence: Indices 475668 -- 476167
AAAATGAATTGGTTATCCATAAAGAGAAAGAAAGTTTTCTTCTAGTTCCGCTTCCGCTTCTTGCT
CTTCCAATTCAGAAAGACTTGTCGGAAATCGCCGGTTGGGTTGGTCCGACCAAGAAAGGCATGGG
ACTTTTGGGCATTGCTTGGGTCGAGCTAGGCTACCTAGTGATTTACAAGCACCCTCACTGCACAC
TTTCTATATATCTGTCTCCATCCAATCAAAGACGTCCATGCCATAGAGAATCAGGCTCGGCAAAA
ACGAGACTAGGGACCATGCTCCCCGCTTTCTTCCTGTGGTTACTATTAGAACACAAGCCAAGGAA
CTAAAAACCACAACACAAGCACCCTTTATTTAATTTAAATTTAATTTACTAGTTTTGGAGTTTTC
GCCCCGCGAAGGTAAATAGTAAAAAAAGTTCCCCGTAGAACGCGAGCGTTGAGGCTTTCGTCGAA
ACAAAGAGAGAGGAGCGAAAAGCCACTTGCTTGATTAACCAAGCA
Right flanking sequence: Indices 476315 -- 476814
GCTAACGCGCATACGTTTTCTTGCTGCGCTTTAGTTTTCTTGCTGCGCATACTCTTGCTGGAAAG
GGGCATGTATCCTTTTTTTGTAAAGAAAGAGGGCTACTTCACGAGCCGCTACTAATAATTGAAAG
GGTTCACAGCGAGTTCAGTCTATAGTGACAAAGGGAACGTTTCCGCCGGAGGGGTTTGTCTCCAT
GGAAAAAGTATTCACTACTGCTTACAGCGCCTTCATTCACTCGTCTTGCTACTTCGGAACAGTTC
AGCGGACACGTGGAGTCGAACGTCTCTCTACAATGTTGCGTAGGTAGACTGATTATTGTAGGTGA
CTGTCTCTAGTGGTTTAGAAAGAGTTCTGTTGCTACCAACTTCTTTCTTTGTAGTCTAGTAGATC
TACATGCTCTAGTGGATCTAAAGTAGGTTTATGTTCAGCAACAGAAAGAGGTGAGGTTCTGCTTT
CTTACCTGAGAATATTTACAAGGGGGAAGCCTCGAAAGGCATACG
Found at i:476343 original size:19 final size:19
Alignment explanation
Indices: 476321--476366 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
476311 TTGCGCTAAC
476321 GCGCATACGTTTTCTTGCT
1 GCGCATACGTTTTCTTGCT
*
476340 GCGCTTTA-GTTTTCTTGCT
1 GCGC-ATACGTTTTCTTGCT
476359 GCGCATAC
1 GCGCATAC
476367 TCTTGCTGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
18 2 0.09
19 19 0.83
20 2 0.09
ACGTcount: A:0.11, C:0.26, G:0.22, T:0.41
Consensus pattern (19 bp):
GCGCATACGTTTTCTTGCT
Left flanking sequence: Indices 475821 -- 476320
AGCTAGGCTACCTAGTGATTTACAAGCACCCTCACTGCACACTTTCTATATATCTGTCTCCATCC
AATCAAAGACGTCCATGCCATAGAGAATCAGGCTCGGCAAAAACGAGACTAGGGACCATGCTCCC
CGCTTTCTTCCTGTGGTTACTATTAGAACACAAGCCAAGGAACTAAAAACCACAACACAAGCACC
CTTTATTTAATTTAAATTTAATTTACTAGTTTTGGAGTTTTCGCCCCGCGAAGGTAAATAGTAAA
AAAAGTTCCCCGTAGAACGCGAGCGTTGAGGCTTTCGTCGAAACAAAGAGAGAGGAGCGAAAAGC
CACTTGCTTGATTAACCAAGCAAGGGGTGAGTGCGCTAGCGCGAAAGCCGTTGCGCAAGAAGCAA
GGGCGCACTAGCGCGAAAGCCGTTGCCTTTACAACAGGGGTGAGCGCACTAGCGCGAAAGCCGTT
GCGCAAGACGGATGAGCGCACTAGCGCGAAAGCCGTTGCGCTAAC
Right flanking sequence: Indices 476367 -- 476866
TCTTGCTGGAAAGGGGCATGTATCCTTTTTTTGTAAAGAAAGAGGGCTACTTCACGAGCCGCTAC
TAATAATTGAAAGGGTTCACAGCGAGTTCAGTCTATAGTGACAAAGGGAACGTTTCCGCCGGAGG
GGTTTGTCTCCATGGAAAAAGTATTCACTACTGCTTACAGCGCCTTCATTCACTCGTCTTGCTAC
TTCGGAACAGTTCAGCGGACACGTGGAGTCGAACGTCTCTCTACAATGTTGCGTAGGTAGACTGA
TTATTGTAGGTGACTGTCTCTAGTGGTTTAGAAAGAGTTCTGTTGCTACCAACTTCTTTCTTTGT
AGTCTAGTAGATCTACATGCTCTAGTGGATCTAAAGTAGGTTTATGTTCAGCAACAGAAAGAGGT
GAGGTTCTGCTTTCTTACCTGAGAATATTTACAAGGGGGAAGCCTCGAAAGGCATACGAGTGCGC
CTCTCGTAGACGAATCCCGACTCAGTCCGCTCCTACTGCGCGGGA
Found at i:482577 original size:17 final size:17
Alignment explanation
Indices: 482555--482588 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
482545 CTGGATCAAG
482555 AAAAGAGAGATATCGAA
1 AAAAGAGAGATATCGAA
482572 AAAAGAGAGATATCGAA
1 AAAAGAGAGATATCGAA
482589 TACTTGAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.59, C:0.06, G:0.24, T:0.12
Consensus pattern (17 bp):
AAAAGAGAGATATCGAA
Left flanking sequence: Indices 482055 -- 482554
CAAACTTCAAGTCTTGATTGAAACTGAAAGTCAAGATTTGATATTTAGTTATATAGTAGTAGAAG
ATAGTAAGCTCTCTAGCTCATGAGGAAGATTAACAGAGTTGATTCCGCCCAATAGCGCTTTGCCT
AGAGTAGAAGCCGGTCCCCGGACGTTAACGGCCAACTTCCTCATTCGCTAGATGCTTGCTTCATA
TGCTTAACACAAGCAAGGGGAAGAAAGTGGTAATAGTGATTGATAGTTACATCAAGATTCATTCA
AGTTACAGAAAGGAAAGCAAGTCACAGGGACTGGACTGGTTGACATTGAATGGGACTAGAGTAGG
ATAGCAGAATGAACTGAACACTTTTACCGCCATAACACATTAAAGCACTCTCTCGCTCAGGAAGA
GGTACCCATTAGATGGAACGGCGAAAGCAAAGCTAACCGAAGTAGTAAGTTTCGCAGCGGAAGTC
ATTCTAAGAGGTAGTTTAGCTCAAAGCATTCCTTGCTGGATCAAG
Right flanking sequence: Indices 482589 -- 483088
TACTTGAACAACTATCGCATTCACTCACTTCATTAAGGTGTAGTTCTTCGGCGCCTGACCGTTGA
CCGTTTCGCTCCTTCGCTTCGCTCGTCTGCTTCTTCGTTTGGAGCATTTCATTTAAGGATTTGTT
GATGAGAAGGGCTATTCCATTCCAAGGCTCAGGAGGAATAATGCATCTGTAGATTTCACTTAATG
GAGAATTCCTAATACTTATATATATATATCAGTAGCGCTATAATATGATATGACCCCGGGCAAGG
ACCAGAGCTCCTATTGACAGATGGCTTCGCGGGCGAGAACCTTACCCCTTTAGGCGGGTTACCCA
CTCCGATGCCATGAACACAAGAGAAAGAAGCTGGCGCAGTGACTCAATCCTCCGATTAAGCTACT
TCTGGATATTAAGATTTTAGCGGGAAAAGGATAATAATCTGTATAGAATTCGAATTGCTAGAGGC
TTCCTGCGGTTGTAAACGGAAGAAAAAAGGCCGCTGCAGCCTGTT
Found at i:498867 original size:29 final size:29
Alignment explanation
Indices: 498825--498933 Score: 166
Period size: 29 Copynumber: 3.8 Consensus size: 29
498815 ATTACATCCA
498825 CCCTCTCCCTTACGGTCGAGCTTTCTCCT
1 CCCTCTCCCTTACGGTCGAGCTTTCTCCT
498854 CCCTCTCCCTTACGGTCGAGCTTTCTCCT
1 CCCTCTCCCTTACGGTCGAGCTTTCTCCT
* * *
498883 CCCTCTCCCTTACGGTCGAGCTCTCTTCA
1 CCCTCTCCCTTACGGTCGAGCTTTCTCCT
* *
498912 CCCTCTCACTT-CGTTCGAGCTT
1 CCCTCTCCCTTACGGTCGAGCTT
498934 CATTAATGAA
Statistics
Matches: 74, Mismatches: 6, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
28 9 0.12
29 65 0.88
ACGTcount: A:0.08, C:0.44, G:0.14, T:0.34
Consensus pattern (29 bp):
CCCTCTCCCTTACGGTCGAGCTTTCTCCT
Left flanking sequence: Indices 498325 -- 498824
TTCCCTTAGCAGGTTATAGTCAAGTAGCTCCACTCCTCTCGCATTCGCTCGAGCAGCTAAACGCG
CCTCTAAAACGAGTTCAAATGGCTTTCCACTCCTCTCTTTCCTTATAGGAAAAAGAAGAGAGTGG
CTTTCAGCTCCTTTCCCTGCGGTCAAGTGGCTTCGCTCCTCTCCTTACAGTCGAGTGATTAAAAT
TCCTCTCACATTCGTTCGAGTGGCTTTTAGCTCCTTTCCAACTTCCACGCCTCTCCCTTTAAACG
CTCCTTTCCTTAGCTTAGCAAGAAAGTTGTCAACACTCCTCTCCTTACAGTCTTTTGGCTCAAAC
TCCTCTCTTTCAAGAGGATTCGCGGCATGTCAAGCCCCTCTTCTTACGGGAAGAGCTTCGTTCGA
TAAGGTTTGAAACGTCGCATTTCCGCTTCCGGCTGGTGGTGAAGGAAAGGGGGAAGCGACTCGTT
CCTTCCTTTTAGGCGAGCTACTTCGTTCGAGCCTCATTACATCCA
Right flanking sequence: Indices 498934 -- 499433
CATTAATGAAAAGAAAAGGGGGAAAGAAAGGGCGTTCCATGCCTTGAACTAATAGTCGAACTGCG
TAGCAACTATACTTAGAACAGCTACGCGCCTCTCCTTCTAGTCGAGTGGCTTTTCGCGCCTCTCC
TGATTCGAACTGCTTCGCTCCTCTCCTTAGAACAGCTACGCTACTAATAGTTCTTCTTTCCGCTC
CTCTCCTTATAATAAAAGCGAGTGGCTAAAGCGCCTTCCCAACGCAGTCAAGTGGAAAGCTCCTC
TCCTTTTTATGGCTTTTCGCCTCTCGCTCCTTTTATAATAAAGTCAAGTGCAAGTAGCTTTTCGC
TCCTTTCCTTAACAGGAGAGTTCAAACGGCTTTCAGCGCCTTCCCAACGCAGTCAAGTTCAAACG
GCTCCGTTCCCCTCCTTTTTAGAATATAGTCGAGTTGCTTGGAACGCCTTTCAAAGGCAGAATAA
ACCACATAAAGAGGTTTTGGGTCTTCATGAGTAGTTCTTGTCGAC
Done.