123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_026515
Parameters: 2 7 7 80 10 50 500
Length:  501401

Tables:   1   

This is table  1  of  1  ( 97 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5569--5616	24	2.0	24	100	0	96	25	8	25	41	1.83
15805--15914	41	2.8	38	86	5	150	24	26	35	13	1.93
15926--15964	19	2.1	19	100	0	78	10	25	23	41	1.86
19053--19091	19	2.1	19	90	0	60	7	28	25	38	1.83
22119--22155	16	2.3	17	81	13	51	56	29	10	2	1.47
26749--26826	19	4.2	19	85	9	99	43	21	25	8	1.82
26770--26824	17	3.1	17	90	10	92	43	20	25	10	1.84
26751--26824	36	2.1	36	92	5	123	45	20	24	9	1.80
42810--42870	19	3.2	19	93	4	88	42	22	26	8	1.81
47920--47984	19	3.6	19	68	16	66	52	21	20	6	1.68
52104--52150	21	2.2	21	84	0	58	6	25	25	42	1.78
52614--52682	21	3.3	21	90	8	88	10	15	31	42	1.81
59460--59578	45	2.8	41	79	9	141	16	31	25	26	1.97
62672--62696	13	1.9	13	100	0	50	16	8	28	48	1.74
63180--63235	29	1.9	29	96	0	103	37	3	8	50	1.51
67879--67968	23	3.9	23	98	0	162	11	30	20	38	1.87
75414--75438	13	1.9	13	100	0	50	32	0	20	48	1.50
80075--80107	17	1.9	17	100	0	66	30	12	12	45	1.78
88579--88614	17	2.1	17	100	0	72	44	19	25	11	1.83
88628--88757	41	3.2	40	75	16	149	10	31	24	33	1.88
91864--91902	19	2.1	19	100	0	78	41	23	25	10	1.86
94201--94247	24	2.0	24	86	0	67	23	27	21	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101567--101614	24	2.0	24	100	0	96	41	25	8	25	1.83
106297--106335	19	2.1	19	100	0	78	5	20	23	51	1.67
108475--108509	17	2.1	17	100	0	70	11	22	20	45	1.82
117683--117721	19	2.1	19	100	0	78	10	25	23	41	1.86
126826--126871	19	2.4	19	79	13	67	41	21	26	10	1.86
126924--127012	41	2.2	41	95	4	162	6	31	23	38	1.81
135358--135425	36	1.9	35	85	5	93	32	23	35	8	1.86
146909--146950	19	2.5	16	76	23	50	40	21	28	9	1.84
146917--146962	19	2.4	19	100	0	92	36	21	28	13	1.91
149010--149086	19	4.1	19	96	0	136	41	20	28	9	1.83
149098--149238	41	3.3	41	80	16	180	9	32	24	33	1.88
149098--149256	41	3.8	41	79	14	162	10	32	23	33	1.89
149093--149256	86	1.9	86	89	2	258	11	32	23	32	1.90
151666--151801	37	3.6	37	76	14	141	25	27	33	12	1.92
151653--151799	78	1.9	78	91	0	240	25	25	36	12	1.92
151806--151851	19	2.4	19	79	13	67	10	26	21	41	1.86
158040--158073	17	2.0	17	100	0	68	58	5	23	11	1.55
185517--185577	19	3.2	19	93	4	88	42	22	26	8	1.81
185711--185777	34	2.0	34	90	0	107	29	31	11	26	1.92
192633--192683	16	2.8	19	71	17	54	45	19	29	5	1.74
192688--192809	42	2.9	42	90	1	174	9	36	23	29	1.87
198188--198266	29	2.7	29	90	4	122	37	18	34	8	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
198344--198507	71	2.3	71	91	4	260	29	18	21	29	1.97
198777--198865	41	2.2	41	95	4	162	6	31	23	38	1.81
205163--205195	16	2.1	16	88	11	50	39	21	6	33	1.78
205480--205520	21	2.0	21	90	0	64	36	9	24	29	1.87
211829--211896	35	1.9	35	100	0	136	22	16	20	41	1.90
213875--213949	20	3.6	20	71	16	71	28	32	16	24	1.96
213895--213972	23	3.5	23	71	16	83	28	33	15	23	1.95
213871--213975	43	2.4	43	100	0	210	26	32	14	26	1.94
215641--215696	27	2.1	27	93	0	94	41	10	19	28	1.85
217289--217432	38	3.8	38	97	0	261	38	11	29	20	1.88
238371--238496	42	2.9	42	87	10	159	28	23	35	12	1.91
238504--238575	19	3.9	19	82	10	96	9	23	18	48	1.77
240561--240598	19	2.0	19	89	0	58	39	18	13	28	1.88
275337--275372	17	2.1	17	100	0	72	44	19	25	11	1.83
309893--309931	19	2.1	19	90	0	60	7	28	25	38	1.83
313123--313158	17	2.1	17	100	0	72	11	25	19	44	1.83
334866--334951	44	2.0	44	100	0	172	19	34	17	27	1.95
335852--335950	29	3.4	29	100	0	198	18	34	13	34	1.89
346971--347093	41	3.0	39	88	8	133	39	20	30	8	1.83
346995--347119	41	3.2	40	92	7	204	37	24	31	7	1.82
347131--347193	19	3.4	19	91	8	112	12	26	20	39	1.89
347133--347187	17	3.1	17	94	5	92	10	25	20	43	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348475--348553	36	2.2	36	97	2	151	36	25	30	7	1.84
348569--348621	24	2.2	24	86	6	72	11	30	18	39	1.86
369742--369848	37	2.9	37	84	1	117	10	37	25	27	1.88
379061--379102	20	2.0	21	90	4	68	42	11	9	35	1.74
381282--381409	41	2.8	44	85	12	163	25	23	33	17	1.96
385598--385639	21	2.0	21	85	0	57	38	38	4	19	1.73
408197--408254	20	2.9	20	100	0	116	44	15	0	39	1.47
408198--408251	10	5.4	10	72	0	54	46	14	0	38	1.45
409799--409860	31	2.0	31	100	0	124	25	29	16	29	1.96
413427--413494	35	1.9	35	100	0	136	22	16	20	41	1.90
415473--415547	20	3.6	20	71	16	71	28	32	16	24	1.96
415493--415570	23	3.5	23	71	16	83	28	33	15	23	1.95
415469--415573	43	2.4	43	100	0	210	26	32	14	26	1.94
417239--417294	27	2.1	27	93	0	94	41	10	19	28	1.85
418887--419026	38	3.7	38	97	0	253	39	11	30	18	1.86
426903--426942	19	2.1	19	100	0	80	40	22	27	10	1.86
429101--429139	19	2.1	19	85	9	53	7	25	12	53	1.65
434292--434328	19	1.9	19	88	0	56	54	0	0	45	1.00
448658--448693	17	2.1	17	100	0	72	44	19	25	11	1.83
449145--449194	17	2.9	17	93	0	82	48	22	18	12	1.80
449412--449445	17	2.0	17	100	0	68	41	23	17	17	1.90
471440--471477	19	2.0	19	100	0	76	42	21	26	10	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
473525--473601	19	4.1	19	96	0	136	41	20	28	9	1.83
473613--473753	41	3.3	41	80	16	180	9	32	24	33	1.88
473613--473771	41	3.8	41	79	14	162	10	32	23	33	1.89
473608--473771	86	1.9	86	89	2	258	11	32	23	32	1.90
476181--476316	37	3.6	37	76	14	141	25	27	33	12	1.92
476168--476314	78	1.9	78	91	0	240	25	25	36	12	1.92
476321--476366	19	2.4	19	79	13	67	10	26	21	41	1.86
482555--482588	17	2.0	17	100	0	68	58	5	23	11	1.55
498825--498933	29	3.8	29	91	1	166	8	44	13	33	1.74

Tables:   1

The End!