Specifications
==============

Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt2/NC_035549.1/NC_035549/Repetitive_sequence/123.misa.ini"

Definement of microsatellites (unit size / minimum number of repeats):
(1/10) (2/6) (3/5) (4/5) (5/5) (6/5) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           569915
Total number of identified SSRs:                 68
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	50
2	16
3	2

Frequency of identified SSR motifs
----------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	total
A	-	-	-	-	-	13	8	1			1	23
C	-	-	-	-	-	1						1
T	-	-	-	-	-	19	5	1		1		26
AG	-	1										1
AT	-	3	5									8
CT	-	1										1
TA	-	4	2									6
AAG	1											1
CTT				1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	total
A/T	-	-	-	-	-	32	13	2		1	1	49
C/G	-	-	-	-	-	1						1
AG/CT	-	2										2
AT/AT	-	7	7									14
AAG/CTT	1			1								2