Specifications
==============

Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt2/NC_063145.1/NC_063145/Repetitive_sequence/123.misa.ini"

Definement of microsatellites (unit size / minimum number of repeats):
(1/10) (2/6) (3/5) (4/5) (5/5) (6/5) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           535805
Total number of identified SSRs:                 62
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	48
2	7
3	3
5	3
6	1

Frequency of identified SSR motifs
----------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	16	17	total
A	-	-	-	-	-	15	4	1	2					22
C	-	-	-	-	-	1								1
G	-	-	-	-	-	1	1							2
T	-	-	-	-	-	12	4	4	2				1	23
AG	-	2												2
CT	-	1												1
TA	-	3												3
TC	-	1												1
AGA	1		1											2
TTC	1													1
GTTAA					1									1
TATAC					1									1
TTATG		1												1
GAAGTA				1										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	16	17	total
A/T	-	-	-	-	-	27	8	5	4				1	45
C/G	-	-	-	-	-	2	1							3
AG/CT	-	4												4
AT/AT	-	3												3
AAG/CTT	2		1											3
AACAT/ATGTT		1												1
AACTT/AAGTT					1									1
ACTAT/AGTAT					1									1
AAGTAG/ACTTCT				1										1