Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_063145
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 535805
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Found at i:15630 original size:21 final size:21
Alignment explanation
Indices: 15606--15668 Score: 108
Period size: 21 Copynumber: 3.0 Consensus size: 21
15596 CATGGAGTTC
15606 GTCATTTATTGCTGGATTTTG
1 GTCATTTATTGCTGGATTTTG
* *
15627 GTCATTTATTGCTGGATGTTC
1 GTCATTTATTGCTGGATTTTG
15648 GTCATTTATTGCTGGATTTTG
1 GTCATTTATTGCTGGATTTTG
15669 ACTCTTTTTT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.14, C:0.11, G:0.24, T:0.51
Consensus pattern (21 bp):
GTCATTTATTGCTGGATTTTG
Left flanking sequence: Indices 15106 -- 15605
GATAAAAGCGGTTGATTACTCGGATTGGTGCGTCCCTGTGCCCAAAAAGGATGGGCTTTTTCGGA
GAAAACCGGTCTTCATCGATCGGGTGGCTCTTGGATGAAAGGGCTCCGGGGGGGTGAGACGAGGT
GTAGCGCAGTCTGGTCAGCGCATCTGTTTTGGGTACAGAGGGCCATAGGTTCGAATCCTGTCACC
TTGATGTGAACGTAAATCTGAAATCTGCACAAACAATATGAAGAAGAATATCAATCGACCGTTAC
CACCTCATCTTACTCTTTATATGTCACAGCTCACTTCGACGTTTCCAATTTCCCATAGAATCTCC
GGGGCTTTCCTCGCCACTATGGTCTTGTTTAGTCCTTTTCTTTGTCCGAAAATGGGTTTGATTAG
CTTGACCTATGAGAATTTCTACCAATCCTCGCCTAATTCATCGAAGTTCATCCCAAGCTCAGTCG
GTCTTACTGCCTTTGCGCTGTCCTTTCATCTTTATCATGGAGTTC
Right flanking sequence: Indices 15669 -- 16168
ACTCTTTTTTTGATTTCGCTTTTTTTCGAATGCTTCCTATTAGATTTGCCATATTTTTGAGTGTC
ATCTTTTTTTTATTTTCTTAAAAGAATTTTTCTCACAGGTTGTGCTTTGATAGCTCTCTGCTTGA
AATTGCTGCCATACCGATAGCTGCTTATGCAGACACAGAGGCCGACGTCGGGTATTTTCTGAGAG
TCTTACCAAACCATTCCTATCATCATCGCAAGCTGCGAGTCTTCTGAGGAGGAAATGGAGGCTCT
TCTTCGCTCCTTTGAGGAGGGAGAGTCCTCTTTACGGGGTATTTTACCTCCCGAGTCGCCCGACC
TTGTTCCTCCCGCCCCCCAACCCGAACAAACAAAAGAGCAGTCCGAGGAGGACGATGAAAATTTG
AGGATCCGGAACCCGAATCTCTAGAGACCGCCTACCAAATGCAAGCTCGAATTGAGACGCTTGTA
AACGAGATTGTACAAAATTACGGCTATGGCGGTCTCTATGAAGAT
Found at i:73928 original size:20 final size:18
Alignment explanation
Indices: 73887--73932 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
73877 AAACTACAGG
*
73887 GCGCGCTAGCTGCGAAGT
1 GCGCGCTAGCTGAGAAGT
*
73905 GCGCGCTAGCTGAGAAAT
1 GCGCGCTAGCTGAGAAGT
*
73923 TCGCGCTAGC
1 GCGCGCTAGC
73933 GCACCTTTGC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.20, C:0.28, G:0.35, T:0.17
Consensus pattern (18 bp):
GCGCGCTAGCTGAGAAGT
Left flanking sequence: Indices 73387 -- 73886
AGCACTGGCGAAAAAGAGGTCGGCTTTACTGAAGAAGAAGGGGCGGGGGCCCCCTCTGCAGCAAG
TGCTTCTTGGACCCCCACCCCCGTTTCCCGAGAGGGGGCCGGGCTGTGTTTCCCCAGCGGCCGGC
CAGTGGCGGCAGAAAACGAACTCGGGTGGGCTCCGCGCGGTTCGCGTTTTCTTGTTAAGAGAGCT
TATCATTCTCTTATAGAAGCCCGCGTCCACGCCGGGGACGGGTAAAGCCCAGCGAAGCAGCAGGG
AGCACTGAGCAATGGGGGGGATGAGGGCGACTCCGCCCATGGGTTGGACCACACCACAGGCGGAA
GTCCTTCCACGACAGGAGAAGGGCAGCGTCCTCGTTGTCGGACCGGAACAAGAAACGGGAGCTAG
TCGTTGGAGGGAAGACAAGGCTCGTGGAGTGCGACTCCACAGAAGAGCCTTACGTGATAGGGCGT
GATAGGGGCGCTAGCGCTTATAGCAGCCAGCTGAAAAACTACAGG
Right flanking sequence: Indices 73933 -- 74432
GCACCTTTGCGCTCATAACCTTATCTCGACAATTTCCTTGATAACGCGCACCTTTGCGCTCATAA
CCTTATCTCGACAATTGACTTTTTGAGGGCTCCTTCGATTGCTCCGTTTGCAGCTTCGGCCCGCC
CGCAACCTGACGCGTTGCGGCGCCTTCTTACGTCACAGGGCGGGGCTTTTCACTTGCTGCCTTTG
CGGAGTACTTTGCTGGCGCTAGCAGCCAAAAAACGTGAGCGCAACTTACGGCGATAGGGCGATAC
GGCTTTTTGGCCTACTCTTGCTGCTTGCTGCTTTCTGTTCAAGCTCCGCTCGCTGCCTCCCCACC
CTTGCTTAGCGTTCCACTTGTGATCCTGGATGCAGTGGAGGATTTTGAGAAATGCGCCCGACCCA
AGAGAAGAAAGGATTGATTCTCTTCTTTCATGTGAACGGCCCTATCTTGTATCGAATGGTTTTTC
GTGCTATACACCACGTTGAGAAAGACCAACCTCCTATGTACCGTA
Found at i:96806 original size:5 final size:5
Alignment explanation
Indices: 96796--96836 Score: 66
Period size: 5 Copynumber: 8.4 Consensus size: 5
96786 CCACTTCTAC
*
96796 TTATG TTATG TTATG TTATG TTATG TTATG TTTTG TT-TG TT
1 TTATG TTATG TTATG TTATG TTATG TTATG TTATG TTATG TT
96837 CACGTTTATG
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
4 4 0.11
5 31 0.89
ACGTcount: A:0.15, C:0.00, G:0.20, T:0.66
Consensus pattern (5 bp):
TTATG
Left flanking sequence: Indices 96296 -- 96795
AAGCCCCAGCACCTCCAATAGCCGATGGAATGCAATAAGAGCGTAGCCTTTATCTTTCAATGTTC
ATAATTATACTCACCAGTGAATTACGTCTTTCCCTTCCTGCGCCTTCATTATGCTATAGTGTATT
GAGTCAGTTCGTAGGTCATCTCTATGCCACCGCCATCTGCGAGTGAAATAGGCTCTGCTACCTTG
ACTTTTGCCTTTGCAGGTACCTAATACATACCCTATTACCCTAATAACTGGTGGTGGTTACCTAC
GTTGCCTGAGGGCGCTCTTTACCTAACCTACCTGTGCTGGAACTATGCTACCACCATTAGCTTAA
TGTGCTGGCTTTTTGATGCAAAATGATGGTGCTAGTGAGGATGCTGCCTGTGTCTCTGTGTCCGT
AGCCTCTGCCTATGCCTTTAGGTCTTTCACCTAGAAGATCAACCACTGATGGATCAAATGGAACC
GGATAAACCACTCGATCAACGCGAAGAAACCTGGGCCACTTCTAC
Right flanking sequence: Indices 96837 -- 97336
CACGTTTATGCTGGTGAATCAACTGAAACTGCCTTCACCTCCGCCCCTGCAACTAGAGGATCTGT
AACCGGACAAAGGAAAGCTGAAACGGGCAATGGCTTTCTAACTTCTTCTTCACTACGGGTAGCTC
CTAGCTATGCTTGTTCTCCCGCCCCTGTCTACGATGCCTATGCCTACTGAGCCTCTGTTCTCTCT
ACTGCTCGGCCAACTCAATCAACCGTGTTTCCAACGGTCACTATTGATGCTTAAACTGGCAGATC
AACCTCATCAATCAAAACTTACATTGGAACCGCGCGAGGGGGAGCCCTCCTTGCCAGTAAGGATG
CTGGCTTTGGTTGAAATTCTTTTGACTCTGCCTTGTATGTTATGGGTGTGAAAGCTGCTGCTTTT
CCTTCCGGGTCCACTACATATAGATCCACTACTTTGGACTATGAAACTGGAAATGAGAGGGCTGC
TACTAGGTATCGAACGGAGGGAACTTGATTGGGATCCGCTTACTA
Found at i:137027 original size:19 final size:19
Alignment explanation
Indices: 137003--137118 Score: 118
Period size: 19 Copynumber: 6.4 Consensus size: 19
136993 TTTTAGCCTG
137003 CGTGCATTCCCCTTATGAA
1 CGTGCATTCCCCTTATGAA
****
137022 CGTGCATTGGGGTTA-G--
1 CGTGCATTCCCCTTATGAA
137038 CGTGCATTCCCCTTATGAA
1 CGTGCATTCCCCTTATGAA
****
137057 CGTGCATTGGGGTTA-G--
1 CGTGCATTCCCCTTATGAA
137073 CGTGCATTCCCCTTATGAA
1 CGTGCATTCCCCTTATGAA
137092 CGTGCATTCCCCTTATGAA
1 CGTGCATTCCCCTTATGAA
137111 CGTGCATT
1 CGTGCATT
137119 GGGGTTAGCG
Statistics
Matches: 75, Mismatches: 16, Indels: 12
0.73 0.16 0.12
Matches are distributed among these distances:
16 22 0.29
17 2 0.03
18 2 0.03
19 49 0.65
ACGTcount: A:0.18, C:0.26, G:0.24, T:0.32
Consensus pattern (19 bp):
CGTGCATTCCCCTTATGAA
Left flanking sequence: Indices 136503 -- 137002
TGCTTCTCCGCCAATAGGAGACAGGGCTTTCGCAATCCCTTTTCAGGAAGATTAAGCGGAGTGGG
AATCATTAACTAAGATTGTGGAATTTGACAGTAGGGCTGGACGACTCGATTTGACTGATTCACCA
GAGCCTGTATTGACTTCTTTTCACGATCAAGACCCAGATGAAGTTTAAAGATAGATTCCTCGAAT
TGTCTGGTTTTCAATCGGATCTCTTTCAATTTCTCTTCAGTTAATGGTAATTTGACTTTTGAATC
TTGCAATAAAAGTTGTTGAAGACCACCCCCTTATACTGATCTGATTTAGTCTTATCCCGTTCTTT
GCTCGCGGTAGTACTGTACTATTTTGAAATAAATAGTTGTACTCCAAAACCTTATTAGTTCTTTT
TTCTCTTCTTCTTTTCTTGGCAAATCACAAACTAATCTCTCTACCGCTCCCTAATTTGCATTTTG
ATATTTCTCTTTTCATTGATTAAGTAAAACATGGATTTTAGCCTG
Right flanking sequence: Indices 137119 -- 137618
GGGGTTAGCGTGCACATCAGGTGTCGCTACCCTGGACTAGAACATTAATACTCAAATGCTATGAG
AGGTATTCGATCTATATTCAATGTTTTGTAGAGAACATCTGGTGTTCACACCAAGAATACATCAG
CAAGAGAACAGCTTTGAATAGTATCTATTCAAGGGATTTACTAATGTGCTCCCTGATAAGAAGTT
CCTTTCAACACTTCGAAAATCAAGAAAGGCCTTATCCCCAATGGGAGTACGTATTAGAGCCTCAC
CCAGTATTAGTTCTAGCCCCTCTAGTATAATTAATTAATTGGTTATTACTAGAGAACAACTGTTT
TACTCTAAAGGGTATCAAATACTAGGAGTACTTTTCATATTTTTTCTTAAAGCTACCTTTCCGGT
GTGGGGCCCGGTCGGGACCGAAGCATGGATCACACCGATGATGTTTCCGGTGACTGGATTCGGTT
TCTGAACCGATTTCATCGCCTCCGCTGGTAATCTTTCTGCTGAGT
Found at i:137043 original size:16 final size:16
Alignment explanation
Indices: 137022--137080 Score: 55
Period size: 16 Copynumber: 3.5 Consensus size: 16
137012 CCCTTATGAA
137022 CGTGCATTGGGGTTAG
1 CGTGCATTGGGGTTAG
****
137038 CGTGCATTCCCCTTATG
1 CGTGCATTGGGGTTA-G
137055 AACGTGCATTGGGGTTAG
1 --CGTGCATTGGGGTTAG
137073 CGTGCATT
1 CGTGCATT
137081 CCCCTTATGA
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
16 19 0.59
17 1 0.03
18 1 0.03
19 11 0.34
ACGTcount: A:0.15, C:0.20, G:0.32, T:0.32
Consensus pattern (16 bp):
CGTGCATTGGGGTTAG
Left flanking sequence: Indices 136522 -- 137021
GACAGGGCTTTCGCAATCCCTTTTCAGGAAGATTAAGCGGAGTGGGAATCATTAACTAAGATTGT
GGAATTTGACAGTAGGGCTGGACGACTCGATTTGACTGATTCACCAGAGCCTGTATTGACTTCTT
TTCACGATCAAGACCCAGATGAAGTTTAAAGATAGATTCCTCGAATTGTCTGGTTTTCAATCGGA
TCTCTTTCAATTTCTCTTCAGTTAATGGTAATTTGACTTTTGAATCTTGCAATAAAAGTTGTTGA
AGACCACCCCCTTATACTGATCTGATTTAGTCTTATCCCGTTCTTTGCTCGCGGTAGTACTGTAC
TATTTTGAAATAAATAGTTGTACTCCAAAACCTTATTAGTTCTTTTTTCTCTTCTTCTTTTCTTG
GCAAATCACAAACTAATCTCTCTACCGCTCCCTAATTTGCATTTTGATATTTCTCTTTTCATTGA
TTAAGTAAAACATGGATTTTAGCCTGCGTGCATTCCCCTTATGAA
Right flanking sequence: Indices 137081 -- 137580
CCCCTTATGAACGTGCATTCCCCTTATGAACGTGCATTGGGGTTAGCGTGCACATCAGGTGTCGC
TACCCTGGACTAGAACATTAATACTCAAATGCTATGAGAGGTATTCGATCTATATTCAATGTTTT
GTAGAGAACATCTGGTGTTCACACCAAGAATACATCAGCAAGAGAACAGCTTTGAATAGTATCTA
TTCAAGGGATTTACTAATGTGCTCCCTGATAAGAAGTTCCTTTCAACACTTCGAAAATCAAGAAA
GGCCTTATCCCCAATGGGAGTACGTATTAGAGCCTCACCCAGTATTAGTTCTAGCCCCTCTAGTA
TAATTAATTAATTGGTTATTACTAGAGAACAACTGTTTTACTCTAAAGGGTATCAAATACTAGGA
GTACTTTTCATATTTTTTCTTAAAGCTACCTTTCCGGTGTGGGGCCCGGTCGGGACCGAAGCATG
GATCACACCGATGATGTTTCCGGTGACTGGATTCGGTTTCTGAAC
Found at i:137045 original size:35 final size:35
Alignment explanation
Indices: 137002--137099 Score: 196
Period size: 35 Copynumber: 2.8 Consensus size: 35
136992 ATTTTAGCCT
137002 GCGTGCATTCCCCTTATGAACGTGCATTGGGGTTA
1 GCGTGCATTCCCCTTATGAACGTGCATTGGGGTTA
137037 GCGTGCATTCCCCTTATGAACGTGCATTGGGGTTA
1 GCGTGCATTCCCCTTATGAACGTGCATTGGGGTTA
137072 GCGTGCATTCCCCTTATGAACGTGCATT
1 GCGTGCATTCCCCTTATGAACGTGCATT
137100 CCCCTTATGA
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 63 1.00
ACGTcount: A:0.17, C:0.24, G:0.27, T:0.32
Consensus pattern (35 bp):
GCGTGCATTCCCCTTATGAACGTGCATTGGGGTTA
Left flanking sequence: Indices 136502 -- 137001
TTGCTTCTCCGCCAATAGGAGACAGGGCTTTCGCAATCCCTTTTCAGGAAGATTAAGCGGAGTGG
GAATCATTAACTAAGATTGTGGAATTTGACAGTAGGGCTGGACGACTCGATTTGACTGATTCACC
AGAGCCTGTATTGACTTCTTTTCACGATCAAGACCCAGATGAAGTTTAAAGATAGATTCCTCGAA
TTGTCTGGTTTTCAATCGGATCTCTTTCAATTTCTCTTCAGTTAATGGTAATTTGACTTTTGAAT
CTTGCAATAAAAGTTGTTGAAGACCACCCCCTTATACTGATCTGATTTAGTCTTATCCCGTTCTT
TGCTCGCGGTAGTACTGTACTATTTTGAAATAAATAGTTGTACTCCAAAACCTTATTAGTTCTTT
TTTCTCTTCTTCTTTTCTTGGCAAATCACAAACTAATCTCTCTACCGCTCCCTAATTTGCATTTT
GATATTTCTCTTTTCATTGATTAAGTAAAACATGGATTTTAGCCT
Right flanking sequence: Indices 137100 -- 137599
CCCCTTATGAACGTGCATTGGGGTTAGCGTGCACATCAGGTGTCGCTACCCTGGACTAGAACATT
AATACTCAAATGCTATGAGAGGTATTCGATCTATATTCAATGTTTTGTAGAGAACATCTGGTGTT
CACACCAAGAATACATCAGCAAGAGAACAGCTTTGAATAGTATCTATTCAAGGGATTTACTAATG
TGCTCCCTGATAAGAAGTTCCTTTCAACACTTCGAAAATCAAGAAAGGCCTTATCCCCAATGGGA
GTACGTATTAGAGCCTCACCCAGTATTAGTTCTAGCCCCTCTAGTATAATTAATTAATTGGTTAT
TACTAGAGAACAACTGTTTTACTCTAAAGGGTATCAAATACTAGGAGTACTTTTCATATTTTTTC
TTAAAGCTACCTTTCCGGTGTGGGGCCCGGTCGGGACCGAAGCATGGATCACACCGATGATGTTT
CCGGTGACTGGATTCGGTTTCTGAACCGATTTCATCGCCTCCGCT
Found at i:143101 original size:21 final size:19
Alignment explanation
Indices: 143063--143101 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 19
143053 TAGCGCGCGA
*
143063 GCTAGCGCCTTCTTTTGAG
1 GCTAGCGCCTACTTTTGAG
143082 GCTAGCGCGCTACTTATTGA
1 GCTAGCGC-CTACTT-TTGA
143102 TTTTTATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 5 0.29
21 4 0.24
ACGTcount: A:0.15, C:0.26, G:0.26, T:0.33
Consensus pattern (19 bp):
GCTAGCGCCTACTTTTGAG
Left flanking sequence: Indices 142563 -- 143062
CTTCTAAGTTCACCTCAGAAAAAAGGTGCTCCAAGCCCGGAACTGTGACCAACAACATCAGGCCA
GCATTTTCTTTACCATTTTTCCTACAATGCACCTACATACCCAATCCTCTGTAACTTGAATTCCC
CTCTCATCGTCATCACCAAGCGGAGCAAGGGCCTTTATATTTGGGGTAGCAGAGGGCTGACATCC
ATAGAGGGTATCTCCTACCCTTCACTGTAGAGATTGCTTTTTTCTCTTCTGTCCGCAATCCCTCG
CGCTTAGGTTAAAGTGAAAAAACCTCCTCATCATCCTTTTCTCTAACTTACTTTCTTGACATCAC
AAATGGAACCGCCGAAAGGTGCAAGATACGGCTCAGCTCTGCTGAAAAGCCGTATCGCCCTATGA
CGTAAGTTAGCGCGATTACCACGTTTTTCAGCAAGCTACGGAGCAAGCGTAGGCCCCCCAAAAAA
GGGGGCCGAAGCGCGCAGGTTGTTCCGTTGCGCGCTAGCGCGCGA
Right flanking sequence: Indices 143102 -- 143601
TTTTTATTTAAGTTAACTTCCGCTTGCAGCTTGCTGATCGCTGTGTTCAAAAATGACACCTGGAT
ATGAGTAGATGTTGGTCGAAAACGTCTCTCATTCACAATGGAACAGAAAGGTCTCGCCATGAAAA
TGCGTCATTTGATTTGGTGCCATCAGAGTTCTGGAAACATCGAAACTCAAACCCCGCTGACTTCT
TCGAAATTCTCAACTTAACACGCCCCCTCACTTCGCGACCTTCCACTACTTCATCTACCGAAATG
ACCGGGCAGATCTCATGTATTCTAGCATTCAACCAGCTCATGATCCTTAGGCTATCTATACAGCA
TGGAGCAGGCAGAGAGATGAAAGGACCACCTTCTCCTGCTTGCTTGATCGGAATCGATTCTATGA
TTGAATAGCAGAAGTGCTACTTAAATGTGTAGTAGAAACTCGGAGAGACAAACAGAGAGGGGACT
CTCTCATACCTGCTAACTCCTAGGATGAGATGTTTTTGGCAGGAA
Found at i:154583 original size:20 final size:20
Alignment explanation
Indices: 154558--154597 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
154548 CGCCTTTCTA
*
154558 ATAGAAGAATATATAATTAG
1 ATAGAAGAATATAGAATTAG
*
154578 ATAGAAGTATATAGAATTAG
1 ATAGAAGAATATAGAATTAG
154598 CCAGATCGTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.53, C:0.00, G:0.17, T:0.30
Consensus pattern (20 bp):
ATAGAAGAATATAGAATTAG
Left flanking sequence: Indices 154058 -- 154557
GGAGGAATTTCCTTGCCTTGTAACGAGCAACAATCTACTTACCTTGCTATCTACGAGACAACATA
GTGGGTGGGATGTGAAGAAATGGAAATAGCATGAATTCCCCTTGCCCGGTACTAACAGGTTTCAT
TCCCCGTATCGCATCCCTAGCCCTGAGATATTGATATTAGGAGTTGGGTGCTTGAGAAGGACCAA
TCAGAGGCAGGAAATGCAGGAATTCCATCCATGTACGTATCAAAAACTGATGGAGGTCATCAGGC
AGCCTATCCGAACCAACTGGGGACAAGGAGTTTAGTTGGTTGCCGACAAGTCTGTCCCCTTCGGA
TACAGATTAAAGACTGCATGGGCTTTAGCTCTCGCCCTAACTACTAAAGTAGGCCCTTTAGCACT
CGCCCTATAGAATGAATTAAGGAGAGGGAGCAAATGAAAGTCGAAATTTCATAATAGTGCGCGTT
AGCGCCTTACTAGATAGCCCTTTTCTACGCTGGTTCGCCTTTCTA
Right flanking sequence: Indices 154598 -- 155097
CCAGATCGTCTGAAGCATGAACAGAATCACCTTTGTTCCGAAGGAGTTCCTTTTTTTTTTTTGGT
CAAAGGCGTTTTCTTTCCCCGGACCGATGACTCGGTTGTTCAGTACTGCTAACTATGTTAGGAGG
ATGCCGTCCCCGCGGGACTACCAGTAGCTTCGGTTGTTGAATATCGTGCAAGTGAGGTTGTGGTT
GTATTGGCTGCAAGCGGAACGTGGGCGCTGTAGGTGTGTGTTGACCATGCACTCTCGCGTCGTGT
AATGTCGTATGTATGATAGAGGTGGTGTGGTGATTGATCTCAATGCTAATGGTTATCCCCAAGGT
TCAACGAATGAATGAAGCTATGATCGTACCCGGATAGAGATGTCTCCAAGCCGGCATAGAATAGA
TAGGCGAAGCAGCCAATAGCAGTCTGTTCTCGCCTATCGATAGATAGCAGGTTGCTGTAAAGCTC
AAACCATTGGAAAAAGAATGGCTACTTTTTTTCTTGTTATTGATA
Found at i:156681 original size:35 final size:35
Alignment explanation
Indices: 156629--156700 Score: 119
Period size: 35 Copynumber: 2.1 Consensus size: 35
156619 CGTCAGCGTA
*
156629 CTTCTCAGCTAGCGCGCCTTTTACTAGAGGCTTTT
1 CTTCTCAGCTAGAGCGCCTTTTACTAGAGGCTTTT
156664 CTTCTCAGC-AGGAGCGCCTTTTACTAGAGGCTTTT
1 CTTCTCAGCTA-GAGCGCCTTTTACTAGAGGCTTTT
156699 CT
1 CT
156701 ACGCTGCTTG
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
34 1 0.03
35 34 0.97
ACGTcount: A:0.15, C:0.28, G:0.21, T:0.36
Consensus pattern (35 bp):
CTTCTCAGCTAGAGCGCCTTTTACTAGAGGCTTTT
Left flanking sequence: Indices 156129 -- 156628
AATGGATCCGCTGGACTGGATGAGCAACCTTCTCTGGGTTCAAAATCTCAGGAACAACCAGCTTA
CTTGCCTTTTAGTAAGACCACTTTGGTAAGCAAAATGAGATTCTTTCTTTATTTGATTTTCATAT
AGGGCTTACAAGACAAGAGCTAGCTTCGTCATGTTATTCGCCTGAACATACATATAGAAGAAGCA
ACCTGGCCTCTGTACCAGCTTCAAAACGTTAGCGTGCTAGCGCGCTAGCCCTATTACGTAAGGGC
TTTCCTTACGTAATAGGGCAGCAAGCGCGTCGGGCCGAGTCAAGAAAAGCCCCTATATATACAGG
CTAGCGCCAGCAAACGAAGGAGCAAGTTACGGCGACCCTTATTGGGAAGGGGGGGAGCCAATTTG
ACAAACTCAAAAAAGCTGTCAAAAAAAGAGTGAAGTGGTGCGCGTTATCAAGGAAATTGCTTGCT
TTACAGTTAAGTCGCGCCAGTGACGTAATAAGGCGCGTCAGCGTA
Right flanking sequence: Indices 156701 -- 157200
ACGCTGCTTGCTGCTTGCTACTTGAAATCAGAAAAGGAAGATTGAGCAAGGCAAGGGAGAAATCA
GTTGTCCCCTCTTCTCTGCCGCCGCCGGTCATATAGAGCGCGGAGCCCGAAACCGCATATGTAGA
AAAAGAGGGAGCGGGGAAGGAAGAACAACCGTTTGACTTTGGCACATGAGGTGGCGGGTTTGGCT
AGGTAACATAATGGAAATGTATCGGACTGCAAATCCTGGAATGACGGTTCGACCCCGTCCTTGGC
CTCGGGGAGTGACGAGCAGCACGGAACTTGAATCAATCAAATGGCATAGGTTAGGGGGGGCTTTC
CTTTGTTAGAAATCCACGGAAAAAATTCTTGAACTTCAAAATCAATGCAATCAAAAGGAAGGAGC
TTTTTACGTAACGCTTCAATAGAATGAATTCGGTGTCCTGGGTAGAATACGCCCCATGGTCGATC
GAAAGTCCTGTTCCACTTAAACTCAAATCTGACCCCTGAAGCCAG
Found at i:177926 original size:21 final size:21
Alignment explanation
Indices: 177900--178042 Score: 134
Period size: 21 Copynumber: 6.8 Consensus size: 21
177890 CCCCTTCCCT
177900 GTTGAGATCGACT-GGCGATTC
1 GTTGAGATCGA-TAGGCGATTC
177921 GTTGAGATCGACT-GGCGATTC
1 GTTGAGATCGA-TAGGCGATTC
*
177942 GTTGAGATCGATAGGCG-GTC
1 GTTGAGATCGATAGGCGATTC
*** *
177962 GCCCATGATCGATAGGCG-GTC
1 GTTGA-GATCGATAGGCGATTC
***
177983 GCCCATGATCGACT-GGCGATTC
1 GTTGA-GATCGA-TAGGCGATTC
178005 GTTGAGATCGATAGGCGATTC
1 GTTGAGATCGATAGGCGATTC
178026 GTTGAGATCGATAGGCG
1 GTTGAGATCGATAGGCG
178043 GTCGCCCATG
Statistics
Matches: 109, Mismatches: 8, Indels: 10
0.86 0.06 0.08
Matches are distributed among these distances:
20 6 0.06
21 98 0.90
22 5 0.05
ACGTcount: A:0.20, C:0.20, G:0.34, T:0.25
Consensus pattern (21 bp):
GTTGAGATCGATAGGCGATTC
Left flanking sequence: Indices 177400 -- 177899
GAAGAAAAAAAAAAGTCAAAGAGGTCCAGCCCTATTTGCTTTGCCCGATAAAGCCCTTGCTTTAA
ACTACTAACTAACTTACCAGTACTATAGCAAGGAGACTTTTCCATGAATACCTCGCCCCGATTGA
CCGAGCCGAGAAAAACAAGTTCCAGAGGCATCTTCTTCCGAATAGAAAAAGTCCTATTGCTCCCT
AGCCTCCACGCCCCCGCTACCGACGCGAAGACCTTCTTCGTTCTTTCCATCTTCTTGACATGATT
TCCCGTGCCCGGGAAAGCCAGCGAGAGCAGCCCTCCCTAATGAGCGCTTCCTCGATATACCAGCT
TTCCAGTTTCCGTTCCCAGTACTTCAGTAGGCCTTGCTGGACCCGCAAACGCCGTTTTCTTCAGC
TCCTGTTGCAACTGACGTTTTGATAAATGGGCATAGGGAGAAGAAGAAGAAGAAGAAGAATCCGG
AGGGATGGATAGATCTAAAAGGGGTCGTTCATTTGCCCCTTCCCT
Right flanking sequence: Indices 178043 -- 178542
GTCGCCCATGATCTCCGATGGCGGGAAGCGGTTGACCATCCACCCCGGACGCTGTCATCTTCATG
GTTGAAAGAAAGCACGAGTCCAGCGCAAAAAGGCTGATTTGAGTTACTGCGAAGGCGAATTGAAA
ACACGCGATAGCAAATAGGAAAAAAAGAAAGAACTATCACTCGAGAAACCGGCCCCTTTTTCTGT
CTTTCTTGCTTGATTCGTCTTTCATCTCTGTGTCTTATCCGGATGGAATGTATACTATCTCCCTA
TCGGACATTATTAAGGGTTTTGATCGAATATTCCTCTCTCTACCTGAATTCAATCAGTAAGAAAA
GAAATATTACATAAAGAGTTTCATTCCATAAAACATGTTCCACAGGGCACCTGTTCAATAAATCA
GGAAAAAGCGAAGCGCTTACAGAGAGAGACCGACCGTAGTAGTTGACTCTGGCTAAGGAAAGGGG
AAGCTGGTTTAGTCAAGAAGTAGGCGTGGGTAGGGGGTAAGTGTC
Found at i:177998 original size:63 final size:63
Alignment explanation
Indices: 177926--178055 Score: 208
Period size: 63 Copynumber: 2.1 Consensus size: 63
177916 GATTCGTTGA
177926 GATCGACTGGCGATTCGTTGAGATCGATAGGCG-GTCGCCCATGATCGATAGGCGGTCGCCCAT
1 GATCGACTGGCGATTCGTTGAGATCGATAGGCGAGTCGCCCA-GATCGATAGGCGGTCGCCCAT
* ***
177989 GATCGACTGGCGATTCGTTGAGATCGATAGGCGATTCGTTGAGATCGATAGGCGGTCGCCCAT
1 GATCGACTGGCGATTCGTTGAGATCGATAGGCGAGTCGCCCAGATCGATAGGCGGTCGCCCAT
178052 GATC
1 GATC
178056 TCCGATGGCG
Statistics
Matches: 62, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
63 58 0.94
64 4 0.06
ACGTcount: A:0.20, C:0.23, G:0.33, T:0.24
Consensus pattern (63 bp):
GATCGACTGGCGATTCGTTGAGATCGATAGGCGAGTCGCCCAGATCGATAGGCGGTCGCCCAT
Left flanking sequence: Indices 177426 -- 177925
CAGCCCTATTTGCTTTGCCCGATAAAGCCCTTGCTTTAAACTACTAACTAACTTACCAGTACTAT
AGCAAGGAGACTTTTCCATGAATACCTCGCCCCGATTGACCGAGCCGAGAAAAACAAGTTCCAGA
GGCATCTTCTTCCGAATAGAAAAAGTCCTATTGCTCCCTAGCCTCCACGCCCCCGCTACCGACGC
GAAGACCTTCTTCGTTCTTTCCATCTTCTTGACATGATTTCCCGTGCCCGGGAAAGCCAGCGAGA
GCAGCCCTCCCTAATGAGCGCTTCCTCGATATACCAGCTTTCCAGTTTCCGTTCCCAGTACTTCA
GTAGGCCTTGCTGGACCCGCAAACGCCGTTTTCTTCAGCTCCTGTTGCAACTGACGTTTTGATAA
ATGGGCATAGGGAGAAGAAGAAGAAGAAGAAGAATCCGGAGGGATGGATAGATCTAAAAGGGGTC
GTTCATTTGCCCCTTCCCTGTTGAGATCGACTGGCGATTCGTTGA
Right flanking sequence: Indices 178056 -- 178555
TCCGATGGCGGGAAGCGGTTGACCATCCACCCCGGACGCTGTCATCTTCATGGTTGAAAGAAAGC
ACGAGTCCAGCGCAAAAAGGCTGATTTGAGTTACTGCGAAGGCGAATTGAAAACACGCGATAGCA
AATAGGAAAAAAAGAAAGAACTATCACTCGAGAAACCGGCCCCTTTTTCTGTCTTTCTTGCTTGA
TTCGTCTTTCATCTCTGTGTCTTATCCGGATGGAATGTATACTATCTCCCTATCGGACATTATTA
AGGGTTTTGATCGAATATTCCTCTCTCTACCTGAATTCAATCAGTAAGAAAAGAAATATTACATA
AAGAGTTTCATTCCATAAAACATGTTCCACAGGGCACCTGTTCAATAAATCAGGAAAAAGCGAAG
CGCTTACAGAGAGAGACCGACCGTAGTAGTTGACTCTGGCTAAGGAAAGGGGAAGCTGGTTTAGT
CAAGAAGTAGGCGTGGGTAGGGGGTAAGTGTCAATCTCAGATTTG
Found at i:178055 original size:21 final size:21
Alignment explanation
Indices: 177947--178055 Score: 98
Period size: 21 Copynumber: 5.2 Consensus size: 21
177937 GATTCGTTGA
177947 GATCGATAGGCGGTCGCCCAT
1 GATCGATAGGCGGTCGCCCAT
177968 GATCGATAGGCGGTCGCCCAT
1 GATCGATAGGCGGTCGCCCAT
* ***
177989 GATCGACT-GGCGATTCGTTGA-
1 GATCGA-TAGGCG-GTCGCCCAT
* ***
178010 GATCGATAGGCGATTCGTTGA-
1 GATCGATAGGCG-GTCGCCCAT
178031 GATCGATAGGCGGTCGCCCAT
1 GATCGATAGGCGGTCGCCCAT
178052 GATC
1 GATC
178056 TCCGATGGCG
Statistics
Matches: 76, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
20 5 0.07
21 66 0.87
22 5 0.07
ACGTcount: A:0.20, C:0.24, G:0.33, T:0.23
Consensus pattern (21 bp):
GATCGATAGGCGGTCGCCCAT
Left flanking sequence: Indices 177447 -- 177946
ATAAAGCCCTTGCTTTAAACTACTAACTAACTTACCAGTACTATAGCAAGGAGACTTTTCCATGA
ATACCTCGCCCCGATTGACCGAGCCGAGAAAAACAAGTTCCAGAGGCATCTTCTTCCGAATAGAA
AAAGTCCTATTGCTCCCTAGCCTCCACGCCCCCGCTACCGACGCGAAGACCTTCTTCGTTCTTTC
CATCTTCTTGACATGATTTCCCGTGCCCGGGAAAGCCAGCGAGAGCAGCCCTCCCTAATGAGCGC
TTCCTCGATATACCAGCTTTCCAGTTTCCGTTCCCAGTACTTCAGTAGGCCTTGCTGGACCCGCA
AACGCCGTTTTCTTCAGCTCCTGTTGCAACTGACGTTTTGATAAATGGGCATAGGGAGAAGAAGA
AGAAGAAGAAGAATCCGGAGGGATGGATAGATCTAAAAGGGGTCGTTCATTTGCCCCTTCCCTGT
TGAGATCGACTGGCGATTCGTTGAGATCGACTGGCGATTCGTTGA
Right flanking sequence: Indices 178056 -- 178555
TCCGATGGCGGGAAGCGGTTGACCATCCACCCCGGACGCTGTCATCTTCATGGTTGAAAGAAAGC
ACGAGTCCAGCGCAAAAAGGCTGATTTGAGTTACTGCGAAGGCGAATTGAAAACACGCGATAGCA
AATAGGAAAAAAAGAAAGAACTATCACTCGAGAAACCGGCCCCTTTTTCTGTCTTTCTTGCTTGA
TTCGTCTTTCATCTCTGTGTCTTATCCGGATGGAATGTATACTATCTCCCTATCGGACATTATTA
AGGGTTTTGATCGAATATTCCTCTCTCTACCTGAATTCAATCAGTAAGAAAAGAAATATTACATA
AAGAGTTTCATTCCATAAAACATGTTCCACAGGGCACCTGTTCAATAAATCAGGAAAAAGCGAAG
CGCTTACAGAGAGAGACCGACCGTAGTAGTTGACTCTGGCTAAGGAAAGGGGAAGCTGGTTTAGT
CAAGAAGTAGGCGTGGGTAGGGGGTAAGTGTCAATCTCAGATTTG
Found at i:187442 original size:21 final size:21
Alignment explanation
Indices: 187402--187441 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
187392 ACAAGATTTC
*
187402 TCTAAGTCACTTCTCTTTTTG
1 TCTAAATCACTTCTCTTTTTG
187423 TCTAAATCACTTC-CTTTTT
1 TCTAAATCACTTCTCTTTTT
187442 TCTTTGTGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.17, C:0.25, G:0.05, T:0.53
Consensus pattern (21 bp):
TCTAAATCACTTCTCTTTTTG
Left flanking sequence: Indices 186902 -- 187401
TCCGGATCTCCTGCGGGAATGATTTGGAAGATCCAAAACCAAAAATAGTGGTATTTGCTAACAAC
AACATAATGGAGGCGGTCAATCAATCTAGATTGATCCGAAATCTGATTCAAATCCAGTATAGCAC
CCATGGGTACATAAGAAATGTATCGAATCGATTCTTTTTAATGAATAGATCCGATCGCAACTTCG
AATATGGAATTCAAAGGGATCAAATAGGAAATGATACTCTGAATCATCTAACTATAATAAAATAT
ACGATCAACCAACATTTATCCAATTTGAAAAAGAGTCAGAAGCCTCTTATTTCTCGAATCGAGAG
ATCCATGAATCGGGATCCTAATGCATATAGATACAAATGGTCCAATGGGAGCAAGAATTTCCAGG
AGCATTTGGAACATTTCGTTTCTGAACAGAAAGACCGTTTTCAAGTAGTGTTCGATCGATTACGT
CTTAATTCGATTGATTGGTCCAAGGTTATCGACAAACAAGATTTC
Right flanking sequence: Indices 187442 -- 187941
TCTTTGTGAGTATCGGGAATATCTCCATTCATAGGTCCGAGATCCACGTCTATGAATTGAAAAGT
CCGAATGATCAACTCTGCAATCAGTTGTTAGAATCAATAGGTGTTCAAATCGTTTATTTGAATAA
AGGGAAACCCTTCTTATTGTATAATCATGATACTTCCAAAAGATCGAAATTCTTGAGCAATGGAG
GAACAATATTACCATTTTTGTTCAATAAGATACCAAAGTGGGTGATTGACTCATTCCATACTAGA
AATAATCGCAGGAAATCTTTTGAGAACGCGGATTCCTATTTCGCAATTCGAGACAATTGGCTGAA
TCCCGTAAAACCATTTCATAGAAGTTCATTGATATCTTCTTTTTATAAAGCAAATAGACTTCGAT
TCTTGAATCATCCACATCGCTTCTGGTTCTATTGTAACAAAGGATTCCCTTTTTATGTGGAAAAG
ACCCGTATCAATAATTATGATCTTACCTATGGGCAATTCCTCAAT
Found at i:189716 original size:24 final size:24
Alignment explanation
Indices: 189684--189736 Score: 106
Period size: 24 Copynumber: 2.2 Consensus size: 24
189674 TCTTATTGAT
189684 GATATCGATATTGATGAGAGTGAC
1 GATATCGATATTGATGAGAGTGAC
189708 GATATCGATATTGATGAGAGTGAC
1 GATATCGATATTGATGAGAGTGAC
189732 GATAT
1 GATAT
189737 TCATGATGAC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.30
Consensus pattern (24 bp):
GATATCGATATTGATGAGAGTGAC
Left flanking sequence: Indices 189184 -- 189683
GAATCCTGGGTCGCGAACAGTGATTCGATTGCTGATGAAGAAAGAGAATTCTTGGTTCCACGGAA
AAAAGGATTGATCAAATTCTATTGAGTCTGACTCATAGTGATCGTTTATCAAAGAATGACTCTGG
TTATCAAATGATTGAACAACCGGGATCAATTTACTTACGATACTTAGTTGACATTCATAAAAAGT
ATCTAATGAATTATGAGTTCAATAGATCCTGTTTAGCAGAAAGACGGATATTCCTTGCTCATTAT
CAGACAATCACTTATTCACAAACCTCGTGTGGGGCTAATAGTTATCATTTCCCATCTCATGGAAA
ACCCCTCTCGCTCCGCTTAGCCCTATCCCCTCCTAGGGGTATTTTAGTGATAGGTTCTATAGGAA
CTGGACGATCCTATTTGGTCAAATACCTAGCGACAAACTCCTATGTTCCTTTCATTACGGTATTT
CCGAACAAGTTCCTGGATGACAAGCCTAAAGATTATCTTATTGAT
Right flanking sequence: Indices 189737 -- 190236
TCATGATGACCTTGATACGGAGCTGCTAACTATGACGAATGTGCTAACTATGTATATGACGCCGA
AAATAGACCGATTTGATATCACCCCTCAATTAGAATTAGCAAAAGCAATGTCCCCTTGCATAGTA
TGGATTCCAAACATTCATGATCTGTATGTGAATGAGTCGAATTACTTATCCCTCGGTCTATTAGT
GAACTATCTCTCCAGAGATAGTGAAAGATGTTCCACTAGAAATATTCTTGTTATTGCTTCGACTC
ATATTCCCCAAAAAGTGGATCCCACTCTAATAGCTCCGAATAAATTAAATACATGCATTAAGATA
CGAAGGCTTCTTATTCCACAACAACGAAAGCACTTTTTCCTTCTTTCATATACTAGGGGATTTCA
CTTGGAAAAGAAAATGTTCCATACTAATGGATTCGGGTCCATGGGTTCCAATGCACGAGATCTTG
TAGCACTTACCAATGAGGCCCTATCCATTAGTATTACACAGAAGA
Found at i:220477 original size:13 final size:13
Alignment explanation
Indices: 220459--220486 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
220449 TATGGACCCG
220459 TTTGGTTTTGTAC
1 TTTGGTTTTGTAC
220472 TTTGGTTTTGTAC
1 TTTGGTTTTGTAC
220485 TT
1 TT
220487 AAGTGTCTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.07, C:0.07, G:0.21, T:0.64
Consensus pattern (13 bp):
TTTGGTTTTGTAC
Left flanking sequence: Indices 219959 -- 220458
GCCATGCCGGGCAGGTGAGATCAAATAGATGAGTTGTACTAAAACAACTGCCCTATCTCCAACCG
ATGGAAGAGGGGCAGCAGCCCCAAGGCAAGAGACGGCATAGCTCTTTTAGAGCTAGTAGTTCCTG
AATTGCCTCATTATTAATCCTAGCCGGGTTAGAGCCATACATAGAGAAAGTTCCATTTTGATAGA
GAGAGTTACCTTCTCACTAAAACTATGAATCACAGGAGGTCATATCCTAGTTGATTTTAAACCGC
ATTTCCGGGGGACTTCGACCTTATTCTTATGTCAATACCAAGTTTGTGAACTGTCCCCCGCCCGG
TTGAGTTTACGATCGACGACCATAATTGATGATAAAAAAAAAAAGAATTCTATGTAGATCCCGAA
TTCTACACAGGGGGGCTTTTGGTATGAATTCCATCGCTTGGATTCAAGTTCCGGAGACTTGGGTG
GGACAAAACAAAATAGTAACATAAGAGCGAATTGATATGGACCCG
Right flanking sequence: Indices 220487 -- 220986
AAGTGTCTAGCATCCCATAAGAAAAAAGTAGGCCGCTTTGGGTATGATGCACGATCCTCATAGAA
TTCGTGTAGATATGAGTTAATCCGCAAAGGAAGATATCAATTCCAAGACCCCAGATCTTAATGCA
TCCAGATCTTAATTAAGAAAGAAGAAAATTCAATAGAACAGATTCTTTTTCAATTTCGTTGCCCA
ATGAATAACTGGAAATCAATGTAGCGGGGGGCTTCATACATTCCATTCACTTCTATTTTATGGAA
AGATTTCTGAACTTGAAGTAAAGCAAGCAAAATCTTAGAAAAAGTACCATGGCTATATATGATAT
GTATATGGATTATTATTGTAGTGTTCTATTCCCTTGACACTAGCCTTTCGCTTTTGGCGAAAAGG
ATTCTTGATCCCTTAAATACCTACAATACCTACGATTATCTCCAGTACCAATTGCTTGGCGTATC
TGATGAATATGGACAGACCCATACGACTCTGATTTTCTCAAGCAG
Found at i:253633 original size:35 final size:35
Alignment explanation
Indices: 253587--253658 Score: 119
Period size: 35 Copynumber: 2.1 Consensus size: 35
253577 CAAGCAGCGT
253587 AGAAAAGCCTCTAGTAAAAGGCGCTCCT-GCTGCGA
1 AGAAAAGCCTCTAGTAAAAGGCGC-CCTAGCTGCGA
*
253622 AGAAAAGCCTCTAGTAAAAGGCGCGCTAGCTGCGA
1 AGAAAAGCCTCTAGTAAAAGGCGCCCTAGCTGCGA
253657 AG
1 AG
253659 TGCGCGCTAG
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
34 2 0.06
35 33 0.94
ACGTcount: A:0.33, C:0.24, G:0.28, T:0.15
Consensus pattern (35 bp):
AGAAAAGCCTCTAGTAAAAGGCGCCCTAGCTGCGA
Left flanking sequence: Indices 253087 -- 253586
GAATGCCGTGTCGTCCAGCGGAGCTTAGAAGAAGGTGACTCGAAGCCTAGAAGAAGGTGACTCGC
GCAGACAGCTGACTCCTTTTCAATAGAAAGGAATAGCCAAACCAACCCAGCTGGCTGGTCAATCT
CAGAGATCTTATCGGCCGGCAAACCGGAGCATTTATCATAAAGCGACCACGGTCCCGACCTTACC
AGCACCGGAGGTTTACTAAAAAATTCACCCCCGAAACCCACTTTCTTTTCTGACCACGTCAACCA
AGCCTAACCAAACCATCATGGTCACGACATGTTGTTGATATTGATTGAGTTTACGGGGCTTTCGC
TGACTGAATCCATCCATAAACCTAGACCCCGCCTCGTAACCAAAGCGTCACGACATAATCCAAAC
AAAGGTGACCTTTGGATTCTTAAGTAGTAGGGGGCAAGGAGGAGCACGTAGGAATGCCGACCACG
TAATAAGCCACTAGTAGCTGAGAGAAAGCGAGCAGCAAGCAGCGT
Right flanking sequence: Indices 253659 -- 254158
TGCGCGCTAGCGCCTTATTACTAAACTGGGGCTTTCATTTGCTCCGTTTGCTCGTTTGCTGCTTT
CAAGCCATTGCTGGCGCTAGCGCGCGAGCTAGCGCCTTCTTTCTTTTGAAGCTTGGCTTCAAAGC
CCCTATCTAGTAAGGCTTACTAGATAAGGGCTTCGCGAAGCGAGCCCTTAGACGATAGGGAAAGC
CGTAGCGCGCCTTACGTGATAGGGGCGCGCTAACGTTTGTTTTTAAGTGTTATGTTATAAGTAGC
GCGCTAGCGCGCCTTCCCTCCTTCTCTCACTTCGGAAAGATTGAGCAGTATTTCATTATGATGAC
CTGGTCGAGAGAGTACGATACATCGGTGTAAAAGATTGAGTGGGATCAGTGAGGTTGGTTATAGT
AAGGCCTGGCCTGAACGGCTTACGAAAAGGTAAGCGGTTAGGTTGACTTTGCCCCCTTTTTTTGC
TTTTTCTGAATCTGAATCTAATCCCATTTGGATTCTCCGCGGGAT
Found at i:261587 original size:58 final size:58
Alignment explanation
Indices: 261497--261609 Score: 217
Period size: 58 Copynumber: 1.9 Consensus size: 58
261487 AATGAAAGCC
*
261497 CTCAAAAAAGCTGTAAATTGTCGAGATAAGGTTATGAGCGCAAAGGTGCGCGTTATCT
1 CTCAAAAAAGCTGGAAATTGTCGAGATAAGGTTATGAGCGCAAAGGTGCGCGTTATCT
261555 CTCAAAAAAGCTGGAAATTGTCGAGATAAGGTTATGAGCGCAAAGGTGCGCGTTA
1 CTCAAAAAAGCTGGAAATTGTCGAGATAAGGTTATGAGCGCAAAGGTGCGCGTTA
261610 GCGCCTTTTA
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 54 1.00
ACGTcount: A:0.34, C:0.15, G:0.27, T:0.24
Consensus pattern (58 bp):
CTCAAAAAAGCTGGAAATTGTCGAGATAAGGTTATGAGCGCAAAGGTGCGCGTTATCT
Left flanking sequence: Indices 260997 -- 261496
TCCCCTGCACCCGGTCTCAAACCTGCTACTGCTACCGGAAAGAGATTCTCTATCCCCAGAAACGG
ATCTGATCTGCAAAGCCGGCTGTTCGAAAAGCGGTACATGGTACGGATCGCTTCCCGCAACAAGA
AGAGGAGTTTTGTCGCTTCGCTCTCTATAGGCCTAAACCGCTTACAGAAAGTATAGATTGATCCA
CCGGACTTTCGGAACAGAACGTCGAATCGGAACCGAAACAACAAGAATTCTCTTTATTCCCTGGA
ACTGCAACACAAAAACTTCCCCTTGTTTTCCGAATGAAAACCTGATAGATGTTACGATGACCGGA
ACCGCTTCTACAGCTGCAAACTGTCTTATTGCGTTGGATAACTTCCTGCTTGGGAGCTTGACTCT
CGTACCTATAGGTACAGACTGACAGCGGTAGATGAGCGCTGTCGTGCAGATGGATCAGTTGCACG
TGTATTTAAGCTTGTGGACGAGGGGAGAGTGAGCAAATGAAAGCC
Right flanking sequence: Indices 261610 -- 262109
GCGCCTTTTACTAGAGGCTTTTCGAGAAGAAGATCTCTGTACATATGGTCTTTTTTTGAGTATAG
TACTCAGCAACAGTCATATCCCCCTGACTAAGATTTGGAACTTCTTATTCAAGCTGGAAAATTGC
CGCTTCATTTCCTCTGGAATAAGGATCATGGAGATAAGACCATACCTGTTTAGCCGATGCCATAA
ACAGAAGACTGGTAGCAATTTACGGCTCAATTGCATTGAGAAGCCATGACATGACCAGCTGATTT
GTGGCACGTAAGTCAGCCATCTTGGTCTCACTCATATTGGGGATCAGAGACAGAAAGCGGGCTGA
TCCATGAAGCTCCATAGCTTTCCTCCAATGAACAGACGAACCGAGCGAGCCCAATGCAAAGAACT
CGAGTGAGGAGATCTGGTTACCTTTTATAATACGTAATACGAGGAGGCAATGAATATGGAATGGT
TGTATACCGAGGCAATGCGTCTTTCAGAGCCAATTCTGAAATGTT
Found at i:266105 original size:16 final size:17
Alignment explanation
Indices: 266074--266107 Score: 52
Period size: 16 Copynumber: 2.0 Consensus size: 17
266064 AGGAAGTTCA
266074 AAGCAAGGTTTTAGAAGT
1 AAGCAAGG-TTTAGAAGT
266092 AAGCAAGG-TTAGAAGT
1 AAGCAAGGTTTAGAAGT
266108 CATTCCCTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
18 8 0.50
ACGTcount: A:0.41, C:0.06, G:0.29, T:0.24
Consensus pattern (17 bp):
AAGCAAGGTTTAGAAGT
Left flanking sequence: Indices 265574 -- 266073
TCAAATTTGCTAGGAGTAGTGATATTCTAAGCTATCCCTTGTCCCCCTTGTCTTGTCTCCTGCCG
TAGTTCCAACCAGTAGTAAGAAACTAATCACTCGTGCAAGAGAGTCCCCAGGAGATAGAGAAGGT
GATAAAACATAAACCTAAACTCCAGCCAGCAAGGAAGACTTGTAGAACTCAGTCCCTTGTTCTAG
TGATAGAGATAGAGATTTACAGGTTCTAGCATAAGAAAGCAAGTCTACTCTCGTTCTAGAGCTAA
AGTCAGGAAGGTTTTAGGTCATCGAAGCGGTTATAGAGTAGTTATTAAGTAATTCCCAGGTAAGC
GAGTAAGGCAGCCAAAGGGAAAGGACTTGAGAAAGGGAGTCCCATCTAGTGCTAGATCTCTCGTA
AGCCGGGTTTTAGAGTCGGATAGAGAATTTCATAAAAAGAGTCCGGTGCTAGTAAGCTATTCTCT
CGTTCTAGCATAAGTCAGCCCCCCGCTCTCAAGTCAGGAAGTTCA
Right flanking sequence: Indices 266108 -- 266607
CATTCCCTTAATTCCCTTGTTGGGGATAAAATTTCATAGACTAAGTCAGTTTTTATTAAGCCAAC
CTGCTAATCCCTAGATCTAGAGCTAGAGAAAGAAGAAGGTAGGGTTGGCCAAGTCAACTTTCTTA
TGGATTAGCTGGTTTAAGAGTGGATTAGAGGTTTTAGCCCGGAATGCCTTCTATATAATAGAACG
AGCACAAGGCTTACTTACTAACTAGGACTCAGAAAGAGCAGCGAACTGAACCATTTCGCTATGGG
TATGGGGCACTATGCTTAACACATTCAAATCTAACGACTTGGACGATTGAGGATTCCGTAAGTCA
CTCAGTGAGTGCTTTCTAAGAGGGGCTGGGCTTTACAGTACAGAATCAAATTCAATACAAACGGG
TCGTAATAGATCGACTTTCATGCTAGTTCTTGCTCCAGCATTCAAGTTCATTTCCGGGAAGGACG
TACCATGTTCAGTTTTGTCTCGATTTGACATTTTTGGTTTTTTCT
Found at i:271351 original size:18 final size:18
Alignment explanation
Indices: 271335--271374 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
271325 GCTTCGCTTG
271335 TTTCGTTGAGCTCGCTTTC
1 TTTCGTT-AGCTCGCTTTC
271354 TTTCGTTAGCTTC-CTTTC
1 TTTCGTTAGC-TCGCTTTC
271372 TTT
1 TTT
271375 AAAAATGGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.05, C:0.25, G:0.15, T:0.55
Consensus pattern (18 bp):
TTTCGTTAGCTCGCTTTC
Left flanking sequence: Indices 270835 -- 271334
TCAATTTGACCCGGTCCGTCACGCTTTGGACATCGCCACCGAGATCGTTGAGGCCCCATGAAGAC
GGCTCTCCTTCACTGGGAAGATCACCGCGATCACTGAGTCTGGTGACCAACGATTCCAGATTATC
CAGCCTTTCTGCCATAGTCTCCACTTGTCCGCCCAAATGGTCGACCTTGCCATCAAGTTGGTCGA
TCCTTGAGTGTTTCCTTAGCAACAGCCGCCGCAGACAGCGCGGAACTGCTATCGTCAAGCTTGGA
CATGGAAGAAGAGAATTAGCAGAAATCGAAAGGGGACCAAAACTCCGCTCTGATACCAACTGTCA
CGCGCACGGGTAGAGAGTCTGCCCGAGTCGTGCGGCCCCCCCAGGTGACGCCTACTTACGTGTAG
CACCTGGGCTCAGCCTTCTCCTTGCCGAGTTTCGCTTCTGATCTCTTGAAGAGTGTCTAGTTCGT
TACCTTCTACTACCGATCTTCTTCTCCTGCTGCTCGCTTCGCTTG
Right flanking sequence: Indices 271375 -- 271874
AAAAATGGTTAATATAACAGCAGCCAAAGACTGACTATATAGTCTTCAGGGATGCTTCCAGCTTT
ACCTATATTCGACGGGAGATTTTCCAGCAAGAACTTTGACGGTATGCGATCGATCAAGTATGTTG
CGGTCAACACAGCTTCTGCCCAAACGAGATTCATCCCAAACATCATAGCTCTAACCGTTTCATAT
AAGTCTCTATTTTTCCTCTCTGCTATTCTAGGAGTATACGCACAAGATCACTGATGAACAGTGCC
TCTTGAAATAATATATTGAGATCATTCCGTGGACATGTATTCTCCTCCAGAATCAGATCGTCAAA
TTCTCTCTTTTCTTTTTTCAGAAGTCAAGAGGCGACCCGCCGGCCACCCCCCCGAAGGAACCGAA
CATCCACGATATCTCTCAAGGCGCTACGCCCTCCGACCCCTAAAGGTCGAGGGCTTTGACGCGAC
CTCACTAAGTCGTAAGCCTTAGGAGTAGCCCCGTCCTTGTCCAAT
Found at i:279065 original size:17 final size:18
Alignment explanation
Indices: 279043--279083 Score: 50
Period size: 16 Copynumber: 2.4 Consensus size: 18
279033 TTGACTTTTC
279043 AGAAAAAACAAAAAAG-A
1 AGAAAAAACAAAAAAGAA
* *
279060 AG-AAAAGCAAGAAAGAA
1 AGAAAAAACAAAAAAGAA
279077 AGAAAAA
1 AGAAAAA
279084 GCTATCAATC
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
16 11 0.55
17 5 0.25
18 4 0.20
ACGTcount: A:0.78, C:0.05, G:0.17, T:0.00
Consensus pattern (18 bp):
AGAAAAAACAAAAAAGAA
Left flanking sequence: Indices 278543 -- 279042
CTACCAGGAAGGTAGACTACTGGAAGGCGAGGAAGCTTATAGAAAACTCATTCGATTGGTTCATA
TCCAGTATTCATCCAGCCAGAAGCAAGGAAGACCCTATCTTACCAGCCAAGCAAGAACAGGAGAC
TGAACCGCAAGGAAGAGTGAATGCCAGCAAGAAAGAAGTTTTGCCTTCTGCTTCTATCGTCTTAG
CTCGACCTTATAACAAGCAGTTGACTTTCTCTGGTAAGCACGTATATAAAGACCAAGCAGGGAGA
CTAGTCCGCTCCTGAAGAAGCGAAGCTCATTGCTACCCAGGCCATTTCTCTTTCTTCGCCCCGTA
ACCCGCAACTATTCATTCATTACGCACCTTTATCAACACCGCCCTAAGCAAGGCACTTCTCGCTC
TTTAATCAGCTAGCTCTGTATTCTAGTGGTTCTTCTCCTAAAGCCAGGGAGTTGGATTCCGGTAA
TAAAGAAAGCAAACGAAGTAGTATCACCTGTTTTCTTGACTTTTC
Right flanking sequence: Indices 279084 -- 279583
GCTATCAATCAGGAGAACCAGAGTATCAGACAGATCATCAGAGTAGCTGGCAAAGAAGACCTTCA
AGACGGGAGCGAAGCGAGAATAGAGGAAGCGAGGGAACGAGCGAGCTTGACCGAGGCCATGTATT
TGAGTGGGGCATGCGAGTTGTGCTTATCCTTTATTCAAGAAGCAAGCCAATAAGTCCTGTGCCGG
GTTGAAGGGTGCAATCAGTCTGTCCCTTACCTGTCCATTCAAGCCTTTCAATATCTCGTCTGGCA
TGATTTTGGGCTTCTGTCGTACTCTCCTCTATCGAGAATGGGTCTCTAGCAACTTGTGGAAAACT
ACTGCCGCTCTTCTGGTAGCCGTTGTTTGCTTCATCGGTTTCAGTATCCTTTGCTTGGTTAATTT
CTTCCCGCTTTACTGACCTTGATTACTTGACTAACTAATAAGGCGCTCGTTTTTCTTATTAGCAC
GATAGGTGGTTAATCCCTTCTGTTATGAGTGAATCTCGTAGGCTT
Found at i:286367 original size:26 final size:26
Alignment explanation
Indices: 286328--286380 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 26
286318 TGACTCGCCA
286328 TGAAAAAGGCCTGC-CTTTCACTGCG
1 TGAAAAAGGCCTGCTCTTTCACTGCG
*
286353 TGAAAGAAGTCCTGCTCTTTCACTGCG
1 TGAAA-AAGGCCTGCTCTTTCACTGCG
286380 T
1 T
286381 TACGCGGGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 5 0.20
26 8 0.32
27 12 0.48
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.28
Consensus pattern (26 bp):
TGAAAAAGGCCTGCTCTTTCACTGCG
Left flanking sequence: Indices 285828 -- 286327
CCCTGTTTATCAGGGTATTTCCTGGGTCCCGACTTGGAAGTCGCTCCCTAACTCACCTAAGTGTA
GGAGAGGGCTAAAAGGGCTCGCCCTATAGAATGAGTTAAGGAGAGGAAAGGAGAAACGTTTTCCT
CTTTCCCTGCACTTAAGTATGAGTTAGCTGCTTTCGCTCGCCACACACGTGTTGAGCTAGAAAGC
ATGGGGCTCATTCCTACTGGACTTGATTTCTGATTTGCCTTCCCCGATTCCTGGCTAGAACCCCC
TACTCCTCACCCGGTATAGAGTGAAACCGATATCAAGGTTCACCGCAGATTATTCGTAGTGGAAC
TAGCAATGTTGCTATTGCAGTACTTTAACCAGGAGGAAGTCATCCGGAAAATAGAGCGGGCACCG
GCACTGGGCACAAATAATAAGAAGAGGATGACGCTTTCCATCCTAAAGTTACAGGGGCCCACCTC
ACCTCTCCCCTTCCCCTTTTCACAGAAGCCACAGGTGACTCGCCA
Right flanking sequence: Indices 286381 -- 286880
TACGCGGGCCTCTCTCTAGCCAAACACCGGCATTCAAGCCAAGCCCAGGGAGCTGTTTCTCCTTC
TTTCATCCCCAGGCGCTCACTTGGAACCCTCGTAAAAGTCGCGTATAAGTTCCTCCTCTGTTGCA
CCATCTTCCTCATCGGTTACTTCTAGGTCGAAGAAGACGTTGAAAAAGTAATATGCCTGACTCAT
AAGGCGATTTTGCTCGATCTCGTCGGCAATTTGAGAAAGATTTTCGCTCCCATACTTTTCCTCAA
GGCGCTCAATAGCGGCCTGTATTCTGTGCGGCTCGTCGGGGAGTGGTTTTTCCTCCTCTTTGCGC
AATTCATGGACGAGATCGCTAATCGTATCTTGATAATAGGTAACAAGATCCCCCATCCTGTCCAA
GTCATAGAAAAGAAAATCCGATTCTACATCCGAATCCGAATCGGCGGGACTTGGATCCACCTCTA
TAAGCTGCTGCCCTTGTGCATCCAATTCCCTCCAGATGTCCTCTT
Found at i:287318 original size:18 final size:18
Alignment explanation
Indices: 287295--287343 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
287285 CTGAAAGTAT
*
287295 AGAATCTTTAGAACGACG
1 AGAATCATTAGAACGACG
*
287313 AGAATCATTAGAACGAGG
1 AGAATCATTAGAACGACG
287331 AGAATCATTAGAA
1 AGAATCATTAGAA
287344 TAAGATCTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.45, C:0.12, G:0.22, T:0.20
Consensus pattern (18 bp):
AGAATCATTAGAACGACG
Left flanking sequence: Indices 286795 -- 287294
TACATCCGAATCCGAATCGGCGGGACTTGGATCCACCTCTATAAGCTGCTGCCCTTGTGCATCCA
ATTCCCTCCAGATGTCCTCTTGGTTGACGTGCACACCCGAGCTTGATGGGTCGCCTTGTTCTTGA
TTCGGGTTGCCTGTAATGGCAACTATTTCGGACCGACCCTCAACACCACCCCCGAAGCCCATTTC
GGAAGTAGCAGGCAGGAAAGCCCCCCACATCAGATCTGTCACAAGAGTAGAAGCAAAAAGAAGAA
AAGTGGTACAACCCCCCCGAGTGAGTAAACGTAAAGAAGGGCATATCACCATTCTAACAAGGAGA
TCCCAATCAAAACCCACATGTATCATTTGATGAAACAGAACAAAAAAAGGAGTGAAAGAAGCATA
AAGAAGGTTAGGTTGTTATTCATCTTCTGTAAAGCAAGACTTTCCATTTTCATAAATATGGCAAA
TCTCATTCGACTAAAAGCGAAAGTATCCCAGAACTCTGAAAGTAT
Right flanking sequence: Indices 287344 -- 287843
TAAGATCTTATCTTAGGAACAAGGATTTGGCCATTCAAAGCAAGGCCAGGCTTGCGGTTTATCGC
CCCGCTAGGCTGGCAGTTTAGCGCCCCGCCAGGCTGGCAGTTTGCAGCACTGCTAGGCATTTTTG
ATAAGAATATCAGAGTCATTGTATTCTATGTTTTGCTTCAACTCCGCTGAACGCACTCCTTGCTT
GGGAAGTTATATACCGAAAAAAAAGCAGATAACTAAAGAGTCGAACCTTATCTTCAATTCAAAAG
TAGACGAACCCTTAGAAATTCGAACAAAAAACGCTATCTTAAAAGTGCCTTGAAAAGAGGTGAAT
CGCTATGCAACGTTCTTTGGTTAGACAACCGTAGATGCACGACTTTATGGAAAAGTCGACTTTTT
TCACCGGGCTTTGACCATGTCTCCCGAACAATCTCAGTACATATGGCGCAAGACGATTCCACATA
TCGAGGTCGGAATGGGATCGGGTGTTTTCACGTCTCACCGTAGTG
Found at i:287427 original size:24 final size:24
Alignment explanation
Indices: 287388--287451 Score: 92
Period size: 24 Copynumber: 2.7 Consensus size: 24
287378 TCAAAGCAAG
* * *
287388 GCCAGGCTTGCGGTTTATCGCCCC
1 GCCAGGCTGGCAGTTTAGCGCCCC
*
287412 GCTAGGCTGGCAGTTTAGCGCCCC
1 GCCAGGCTGGCAGTTTAGCGCCCC
287436 GCCAGGCTGGCAGTTT
1 GCCAGGCTGGCAGTTT
287452 GCAGCACTGC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.11, C:0.33, G:0.33, T:0.23
Consensus pattern (24 bp):
GCCAGGCTGGCAGTTTAGCGCCCC
Left flanking sequence: Indices 286888 -- 287387
GTGCACACCCGAGCTTGATGGGTCGCCTTGTTCTTGATTCGGGTTGCCTGTAATGGCAACTATTT
CGGACCGACCCTCAACACCACCCCCGAAGCCCATTTCGGAAGTAGCAGGCAGGAAAGCCCCCCAC
ATCAGATCTGTCACAAGAGTAGAAGCAAAAAGAAGAAAAGTGGTACAACCCCCCCGAGTGAGTAA
ACGTAAAGAAGGGCATATCACCATTCTAACAAGGAGATCCCAATCAAAACCCACATGTATCATTT
GATGAAACAGAACAAAAAAAGGAGTGAAAGAAGCATAAAGAAGGTTAGGTTGTTATTCATCTTCT
GTAAAGCAAGACTTTCCATTTTCATAAATATGGCAAATCTCATTCGACTAAAAGCGAAAGTATCC
CAGAACTCTGAAAGTATAGAATCTTTAGAACGACGAGAATCATTAGAACGAGGAGAATCATTAGA
ATAAGATCTTATCTTAGGAACAAGGATTTGGCCATTCAAAGCAAG
Right flanking sequence: Indices 287452 -- 287951
GCAGCACTGCTAGGCATTTTTGATAAGAATATCAGAGTCATTGTATTCTATGTTTTGCTTCAACT
CCGCTGAACGCACTCCTTGCTTGGGAAGTTATATACCGAAAAAAAAGCAGATAACTAAAGAGTCG
AACCTTATCTTCAATTCAAAAGTAGACGAACCCTTAGAAATTCGAACAAAAAACGCTATCTTAAA
AGTGCCTTGAAAAGAGGTGAATCGCTATGCAACGTTCTTTGGTTAGACAACCGTAGATGCACGAC
TTTATGGAAAAGTCGACTTTTTTCACCGGGCTTTGACCATGTCTCCCGAACAATCTCAGTACATA
TGGCGCAAGACGATTCCACATATCGAGGTCGGAATGGGATCGGGTGTTTTCACGTCTCACCGTAG
TGCCCGGTTTGTCTTTCTTTCCGATTGATGAACAAGAAGGAAAATGGAACTATGGCGCTTTTTTG
ACTCGGCCCGACAGCAGGTCCATGGTTTCCATCGCGAAGGATTCA
Found at i:287466 original size:24 final size:24
Alignment explanation
Indices: 287391--287466 Score: 73
Period size: 24 Copynumber: 3.2 Consensus size: 24
287381 AAGCAAGGCC
* * * *
287391 AGGCTTGCGGTTTATCGCCCCGCT
1 AGGCTGGCAGTTTAGCGCACCGCT
* *
287415 AGGCTGGCAGTTTAGCGCCCCGCC
1 AGGCTGGCAGTTTAGCGCACCGCT
*
287439 AGGCTGGCAGTTT-GCAGCACTGCT
1 AGGCTGGCAGTTTAGC-GCACCGCT
287463 AGGC
1 AGGC
287467 ATTTTTGATA
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
23 2 0.05
24 42 0.95
ACGTcount: A:0.13, C:0.32, G:0.33, T:0.22
Consensus pattern (24 bp):
AGGCTGGCAGTTTAGCGCACCGCT
Left flanking sequence: Indices 286891 -- 287390
CACACCCGAGCTTGATGGGTCGCCTTGTTCTTGATTCGGGTTGCCTGTAATGGCAACTATTTCGG
ACCGACCCTCAACACCACCCCCGAAGCCCATTTCGGAAGTAGCAGGCAGGAAAGCCCCCCACATC
AGATCTGTCACAAGAGTAGAAGCAAAAAGAAGAAAAGTGGTACAACCCCCCCGAGTGAGTAAACG
TAAAGAAGGGCATATCACCATTCTAACAAGGAGATCCCAATCAAAACCCACATGTATCATTTGAT
GAAACAGAACAAAAAAAGGAGTGAAAGAAGCATAAAGAAGGTTAGGTTGTTATTCATCTTCTGTA
AAGCAAGACTTTCCATTTTCATAAATATGGCAAATCTCATTCGACTAAAAGCGAAAGTATCCCAG
AACTCTGAAAGTATAGAATCTTTAGAACGACGAGAATCATTAGAACGAGGAGAATCATTAGAATA
AGATCTTATCTTAGGAACAAGGATTTGGCCATTCAAAGCAAGGCC
Right flanking sequence: Indices 287467 -- 287966
ATTTTTGATAAGAATATCAGAGTCATTGTATTCTATGTTTTGCTTCAACTCCGCTGAACGCACTC
CTTGCTTGGGAAGTTATATACCGAAAAAAAAGCAGATAACTAAAGAGTCGAACCTTATCTTCAAT
TCAAAAGTAGACGAACCCTTAGAAATTCGAACAAAAAACGCTATCTTAAAAGTGCCTTGAAAAGA
GGTGAATCGCTATGCAACGTTCTTTGGTTAGACAACCGTAGATGCACGACTTTATGGAAAAGTCG
ACTTTTTTCACCGGGCTTTGACCATGTCTCCCGAACAATCTCAGTACATATGGCGCAAGACGATT
CCACATATCGAGGTCGGAATGGGATCGGGTGTTTTCACGTCTCACCGTAGTGCCCGGTTTGTCTT
TCTTTCCGATTGATGAACAAGAAGGAAAATGGAACTATGGCGCTTTTTTGACTCGGCCCGACAGC
AGGTCCATGGTTTCCATCGCGAAGGATTCAATCCAGCCACAGGTT
Found at i:323289 original size:12 final size:15
Alignment explanation
Indices: 323266--323314 Score: 89
Period size: 15 Copynumber: 3.3 Consensus size: 15
323256 TAATAATTAA
323266 TATATAATAATATCT
1 TATATAATAATATCT
323281 TATATAATAATATCT
1 TATATAATAATATCT
*
323296 TATATAATCATATCT
1 TATATAATAATATCT
323311 TATA
1 TATA
323315 ATAAGAATCT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
15 33 1.00
ACGTcount: A:0.45, C:0.08, G:0.00, T:0.47
Consensus pattern (15 bp):
TATATAATAATATCT
Left flanking sequence: Indices 322766 -- 323265
CTTCTTGGAGCTAGGCTAAAACTCGTCCACATCTCCTGTCCGAACGATCATCTCCCGTCGTCCTT
CCGGCTTGCTATCTCTTTATATCTCTTTTCCGGTAGGACTCTCTCTTCGCCTTGGCTGCTGATTA
AATTGAGTAGTTTAGAGGCGAAAAAACGTGACTTTCATAGGCCTGACGGTGGTCTTTTACTGGTG
CTCCGCCTGAAAATACTATCTTTGGTTTTTGAGACCAGTGCGATAAATGTTTGAGACGTAGTTTT
GTTAACAACAGTGTTTCTTCCTTACTTTAACAAGTAAGCAAGTAAACTACCTTCACGGGTAAGGA
TCGTCTGTGCTATTTTTTTCTCTTCCTCGATAGTGGCAAGTAGAAATCCCTCTTACTCAATAGTG
GCTAAGGCAAGAAAGTATGATCAATGATCTTCTGCTAATGCTAGCGTCTTTTTCATCTCTAATCT
CATCTATGCTTCAGGAAAAAGTTTCACCTACCCGCTAATAATTAA
Right flanking sequence: Indices 323315 -- 323814
ATAAGAATCTCCTTAATTTCACAAAGAATTTCCCTACCTGACTAAATAGGTGATCTCACTAGCCG
GATTGAATAGGATTAAATATCTCTCACTAGCCCATTCCCTGACTATCGGCTTTCACTGCTGTAAT
TGTATTCGCCAACTTTCTATCGTTGAGATCTTTCGCAGGCCTACGAGACAGAGATATAGAAAGTG
TGCAGTGCAGTGAGGTTTATTATATAGCCCACTTCCTGTCCTGTAGATCAATAGCCCGCTAGTCA
TAACAAAGATTCTCGACATTGCCAAGTAATTGCGTATCTATAATAGAGATGTAGAAATGAATATA
TATACTTTCTTCTCTTATATATGATTTTCTATATCTCCTAGTAGATGTGATTTTCAGTCGGAAGA
GGGTGAAAACACTGAGGAACCGGGTGCCGTAAATCGGGTACATCATCTGGTGAAGGAACACTGTC
AATGCGCCGACTTCAGATCACAGCACTACTCGAAGCCATCCTTCT
Found at i:325315 original size:44 final size:44
Alignment explanation
Indices: 325252--325340 Score: 153
Period size: 44 Copynumber: 2.0 Consensus size: 44
325242 CCCATCCTTC
*
325252 AATATCATGATTGGGTCGACCAGGTCAGGCCAGATC-ATGAGTGA
1 AATATCATGATCGGGTCGACCAGGTCAGGCCAGATCTA-GAGTGA
325296 AATATCATGATCGGGTCGACCAGGTCAGGCCAGATCTAGAGTGA
1 AATATCATGATCGGGTCGACCAGGTCAGGCCAGATCTAGAGTGA
325340 A
1 A
325341 TAGAAAATCG
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
44 42 0.98
45 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.29, T:0.21
Consensus pattern (44 bp):
AATATCATGATCGGGTCGACCAGGTCAGGCCAGATCTAGAGTGA
Left flanking sequence: Indices 324752 -- 325251
ATGATCCTGTAGCTCAAGAAAGAGTTTACAGCTCGCAATAAGAAAATGGAAGAAAACGTGAATGA
TTTCTTAATGGAGCAGACGGAGCAATACCATTCTTTTTCCTATTTACGGAACAATGGTCTCTCCT
ATGCCGAACATCTGATCTTTGATGATGATGAGCGGTTGAGACGCATCGAAGATATTCTGCGAGAT
ATGAACGATCGCGGAAGAAATTCCAAAGCGTATACCACCTTCATCAAAGGGATCACAAAGGAGGA
ATAGGGAGCAAAAGAGAAGAGATTCCCGACCCGGAGCATGTTATTGACTCAACCACAAATCTGTT
GAATGAAGGTAGCTTGCTTACTCTCAGCCACTAGTTAGAAGGAAATCTAAGGACTGAGCATAAGC
GAAGTCAAGGGAGGCGGGCTAAGATTCCATTCGAAGTAACGTAACAGGATTCGATTATGCACCAT
CTTCAAAACGGATCCGGAGTTTTTCGAGAAAAGGTCCCATCCTTC
Right flanking sequence: Indices 325341 -- 325840
TAGAAAATCGAAAACGTACATTGCTGTTCCAGCGGAAATACTTGGAATAATTCTACCACTTCTAC
TAGGAGTAGCCTTTTTAGTGCTAGCTGAACGTAAAGTAATGGCTTTTGTGCAACGTCGAAAGGGT
CCTGATGTAGTGGGATCGTTCGGATTGTTACAACCTCTAGCAGATGGTTCGAAATTGATTCTAAA
AGAACCTATTTCACCAAGTAGTGCGTCTTTCTCCCTTTTTAGAATGGCTCCAGTGGCTACATTTA
TGTTAAGTCTGGTCGCTCGGGCCGTTGTACCTTTTGATTATGGTATGGTATTGTCAGATCCGAAC
ATAGGGCTACTTTATTTGTTTGCCATATCTTCGCTAGGTGTTTATGGAATTATTACAGCTGGTCG
GTCTAGTAATTAGGGGGGCGGCCGTTCGGTCGCCTATGATAAACGGACCAATGGGTCAAAAATGG
GTTTGTGCCGCAGGTGTTGAACGATCTACTCTACACAGGTGTGGG
Found at i:332461 original size:31 final size:31
Alignment explanation
Indices: 332425--332486 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
332415 CCGAGTTGCC
* *
332425 CGGGAAGGAGATGATCCGGTTGCTTTAGATG
1 CGGGAAAGAGATGATCCGGTTCCTTTAGATG
332456 CGGGAAAGAGATGATCCGGTTCCTTTAGATG
1 CGGGAAAGAGATGATCCGGTTCCTTTAGATG
332487 ATAGAAGGGC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.24, C:0.15, G:0.35, T:0.26
Consensus pattern (31 bp):
CGGGAAAGAGATGATCCGGTTCCTTTAGATG
Left flanking sequence: Indices 331925 -- 332424
ATCCACTGAATGGATTAGGCACGAGCCCAGAACCAGCATTCATCGGAGAAGAGCAGGGATGCGAC
AATTCCGCTCAATAGAAAAGGCAGGACGGATACCACTCATATCTCTTGCTCGGTTTTGTCCCTTG
CTTCGTGTTGCCCACACAAGAGATGGATGGCGGCTTTCCATTCCGGTAAAGAGAACAGGCAGGGA
CCGAGCTACGATCGGAAGATGGACCGCTAGATAGTCACCAATCTATAGAAGAGCCAGGGAGCAGC
TACCATTAGATAGTGACCGGCAAATAGAAGAGCCAGGGAGCAGCTACGATCCCGCGGCTTGAGAT
TGAGGGGGACAATCCGGGGAGACAAGGGGTGGATTCCGATTATGCGAGATAGGTTGTCCCGAATG
ACAGATGGGTTTGGTAAGATAAGTGAAATTCATGACGGAGAAGTTGCTGCTTCCATACGATCCCG
GGGCTTTGTTGCCCTACTTCGATTGATGATAGGAGCCGAGTTGCC
Right flanking sequence: Indices 332487 -- 332986
ATAGAAGGGCCTTGCCCGGGAAACAGATTATCAGGGAGATGATAGAACGGCCAGTTTTGAATACT
TATATAATATAGCCATTAAATAGAAGAGGGAGGACGGCTCCACTCCACTTATATGACTGCTTTAG
ATTAGGGCAATATATGAGTAGAATCCAGTCTAGATTAGGGCTTCCCATTCCACTTCATTAGATAA
TAGTAGGCGGAGAGAATCATTCATGAAAGCTGACCCGGGCTTAAACCAATTAACAACTTGCATCG
GCCAGGCTTAAACCAATATCCAGGGACAACGAGAGATCGCTTTCCATCGCCGAGGCATTCACCAA
AATGCCAGATAGGTTTGAGATAGGTTGCTGCAATCCGAGACGAGTTATCATGCCAGATAGGGTTG
AGATAGGTTGCATTCAGCTGAGATAGTTAGCTAGGGTTGAGGGCCCATCATTAATAGTTGCTGCT
GCCACTTTAGCTAGGGTTGAGGCTTGAGGTTTAGAATGAACCTAA
Found at i:339762 original size:16 final size:16
Alignment explanation
Indices: 339716--339795 Score: 88
Period size: 16 Copynumber: 4.8 Consensus size: 16
339706 TTGACCCTGA
*
339716 CGTTAGCGTGCATTCC
1 CGTTAGCGTGCATTGC
* *
339732 CCTTATGAACGTGCATTGG
1 CGTTA-G--CGTGCATTGC
* *
339751 GGTTAGCGTGCATTAC
1 CGTTAGCGTGCATTGC
339767 CGTTAGCGTGCATTGC
1 CGTTAGCGTGCATTGC
339783 CGTTAGCGTGCAT
1 CGTTAGCGTGCAT
339796 GAAAAACATC
Statistics
Matches: 52, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
16 39 0.75
17 1 0.02
18 1 0.02
19 11 0.21
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (16 bp):
CGTTAGCGTGCATTGC
Left flanking sequence: Indices 339216 -- 339715
ATAATAGATTGATATATATGAGCATAAACCTCACTTTTTGGAAGTAACTTACAATCAAGATCTGT
CAAGGGGATAGCCGGACCAAGCGTAAATGTGATCTCCTCTCCGTAAGATCGCTTCACGGTAAAGG
AAATAGTGAACTTACTGTAACCAGATAAGGATGGGTAAGCAAACTGGATTAAGAGATCCATGGTT
GCAAGACAGAGTAGGTCAATCTCGTTAACAAGAGGGTAAGGCTCAAAGAAGTGATGTGTAGCAAT
GATTAACCCAGGATGCGGATCTTGGTGTGTTGTTCGTTCAATCTTTTGATAGAAGTGATTCAATA
ACGGTCTAGTAGTTACGCTGTCTGTGGAGTATGCCTTTCTGTTTTTCATTTGTATGTTTTACCTT
ATTAGTTCTTTTTTTTCTTCTGATTTTCTTGGCAAATCATTAACTAATCGAGATACCCAATTCCT
AATTTGCATGGCTCTCTTAAAAGTCAAACTTGGATTTGACCCTGA
Right flanking sequence: Indices 339796 -- 340295
GAAAAACATCAGGTGTCGCTACCCTTCTACAGTCTATTATCGAGGGAACGGCATCGAGGGAACCG
CTTTACATCCATCATCAATGGGAGAGGCGGAGAAATGATTGGTGCTGCTTTAGATCGGCATCTCT
ATAACCCAAGCCTTAATACTAGGGGTGTGTGCTCCTACTAATAGAAAGGGGGGTGTGCTCCGGCT
TAAATACGAGGGATTCAATTACGCTTAGCAACGCCGAATTCAAGGGCGTGGCTTTATTCAAGGGC
GTGGCTCATCATAAGGGGAACAGATCATAACAACAATAGGAGCGATCCACTGGTCATGGGGGAAC
AACCGGCATAACCATGATGGTTGCTTTTCACAGGGTGCGTTTCACAGGGAATGCCAGGCAGATAC
TATATACGGATTAACAACTTACGCTTCCCAACCAGTGGAGATTGCATGTTCCGAACCACGAGGTT
TTTCCTTCGATTGGCTGCATTGAGGCGGAGAACCTAATCCACTCG
Found at i:339788 original size:32 final size:34
Alignment explanation
Indices: 339716--339795 Score: 101
Period size: 32 Copynumber: 2.4 Consensus size: 34
339706 TTGACCCTGA
* *
339716 CGTTAGCGTGCATTCCCCTTATGAACGTGCATTGG
1 CGTTAGCGTGCATTACCCTTATG-ACGTGCATTGC
* *
339751 GGTTAGCGTGCATTACCGTTA-G-CGTGCATTGC
1 CGTTAGCGTGCATTACCCTTATGACGTGCATTGC
339783 CGTTAGCGTGCAT
1 CGTTAGCGTGCAT
339796 GAAAAACATC
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
32 21 0.52
34 1 0.03
35 18 0.45
ACGTcount: A:0.16, C:0.24, G:0.29, T:0.31
Consensus pattern (34 bp):
CGTTAGCGTGCATTACCCTTATGACGTGCATTGC
Left flanking sequence: Indices 339216 -- 339715
ATAATAGATTGATATATATGAGCATAAACCTCACTTTTTGGAAGTAACTTACAATCAAGATCTGT
CAAGGGGATAGCCGGACCAAGCGTAAATGTGATCTCCTCTCCGTAAGATCGCTTCACGGTAAAGG
AAATAGTGAACTTACTGTAACCAGATAAGGATGGGTAAGCAAACTGGATTAAGAGATCCATGGTT
GCAAGACAGAGTAGGTCAATCTCGTTAACAAGAGGGTAAGGCTCAAAGAAGTGATGTGTAGCAAT
GATTAACCCAGGATGCGGATCTTGGTGTGTTGTTCGTTCAATCTTTTGATAGAAGTGATTCAATA
ACGGTCTAGTAGTTACGCTGTCTGTGGAGTATGCCTTTCTGTTTTTCATTTGTATGTTTTACCTT
ATTAGTTCTTTTTTTTCTTCTGATTTTCTTGGCAAATCATTAACTAATCGAGATACCCAATTCCT
AATTTGCATGGCTCTCTTAAAAGTCAAACTTGGATTTGACCCTGA
Right flanking sequence: Indices 339796 -- 340295
GAAAAACATCAGGTGTCGCTACCCTTCTACAGTCTATTATCGAGGGAACGGCATCGAGGGAACCG
CTTTACATCCATCATCAATGGGAGAGGCGGAGAAATGATTGGTGCTGCTTTAGATCGGCATCTCT
ATAACCCAAGCCTTAATACTAGGGGTGTGTGCTCCTACTAATAGAAAGGGGGGTGTGCTCCGGCT
TAAATACGAGGGATTCAATTACGCTTAGCAACGCCGAATTCAAGGGCGTGGCTTTATTCAAGGGC
GTGGCTCATCATAAGGGGAACAGATCATAACAACAATAGGAGCGATCCACTGGTCATGGGGGAAC
AACCGGCATAACCATGATGGTTGCTTTTCACAGGGTGCGTTTCACAGGGAATGCCAGGCAGATAC
TATATACGGATTAACAACTTACGCTTCCCAACCAGTGGAGATTGCATGTTCCGAACCACGAGGTT
TTTCCTTCGATTGGCTGCATTGAGGCGGAGAACCTAATCCACTCG
Found at i:341120 original size:17 final size:18
Alignment explanation
Indices: 341097--341147 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
341087 TTCTACTCCA
341097 TGGAGAAGAAAGGGGAAG
1 TGGAGAAGAAAGGGGAAG
* *
341115 -GGAGAACAAAAGGAGAAG
1 TGGAGAA-GAAAGGGGAAG
*
341133 TGGAAAAGAAAGGGG
1 TGGAGAAGAAAGGGG
341148 TTTAAGCAAG
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
17 6 0.23
18 15 0.58
19 5 0.19
ACGTcount: A:0.49, C:0.02, G:0.45, T:0.04
Consensus pattern (18 bp):
TGGAGAAGAAAGGGGAAG
Left flanking sequence: Indices 340597 -- 341096
ACCTTTTGCATCCGCTCTCCCGCTTTTACCTTGCATTCACTGTGCTCACCGCACACGGAATTGTC
CTAACACAGAAGTACTAGGGGTTAGCCTTTGCTTTGCCGCATTAGTGAGGGTCTCTAGGAAAACG
TTTCTACCCCACGTACCGATCCTTCGAGAGGTCACTTCCGTAGTCGGGGCCATTGGAGTTGGAGA
CACAAACGTTTGCCGTGCATTTAGCCTAGGTGTCCCGAAGAAATGGCCTAAACCCCCTTAGTGGA
GAAGCATGGAATGCATTCCATGCCACGCACGCACTCGCGCTCCTTCCTACTCGAGTAGAGTGAGA
AAAACGTGAGAGAGGGCTAATCAAAGCAAGTAGGAACAATAGGTCCTTGTTTCATTTATGAGCGA
GAGTTGTAGAGCTTGGAGAAATTTTTCAAGAAATTTGCCCCTGAATGATTTTCCTGGTTGATTTG
GCCTCCTTACCTTAGAAAGGCCTCCCACGTCCCCTTTCTACTCCA
Right flanking sequence: Indices 341148 -- 341647
TTTAAGCAAGAGTCAGAAAATCGGACCACCGAACAATGGTCGATGCACAAGGTTAGTGCCTGGAA
TGAAGATTTCTTGAATCTTGGCCCCCTCCTTCTGAATCAATTCCCTTATATCCTACATAGTAAGC
TTCACCCGGGAAGAAGGCTTGTAGAGCGAAATCAAAAATCAAAGGAGGTCAATTCCAGAAGAAGA
AATTCCTGGGAAGGGAAAGATTAGGGAGGGTTGAGGGCCCATTGTAACCAATTTCGGGACCCACG
AAACTCTCTTGAATTTCTTAGTGGCTTTGCTTTACAACACGTTTTCCAGACTTTAGTGAAATTCT
CAATTTTGTCGAAGAGATTGAACTAAAATAAAGCACGCTTTCAAAACATTGGCTCCCTTTTCCCA
CTTCGTTTCTAAAGATTGAACCGCCCCTAACCTAAATCTCCTTCAGTGGGTTCCTAAGACTCATT
CTCCAACCATTTTCTTTTTGAGAGTCCTTATCTTGGTTAAAAAGG
Found at i:345950 original size:20 final size:20
Alignment explanation
Indices: 345925--345965 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
345915 GGCTAGGCAG
*
345925 TGCAACCCGAAAGGTGAGCC
1 TGCAACCCGAAAAGTGAGCC
*
345945 TGCAACCTGAAAAGTGAGCC
1 TGCAACCCGAAAAGTGAGCC
345965 T
1 T
345966 CTCATCATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.32, C:0.27, G:0.27, T:0.15
Consensus pattern (20 bp):
TGCAACCCGAAAAGTGAGCC
Left flanking sequence: Indices 345425 -- 345924
TGCGCCTACTTTCCTTAGGTTAAGTGTTACATAGAGCATTAGCTCAACGTAAAGCCTTTCCCTCC
CTTTCTTTCCAAGCAATCAATGCGGCTAAGCGAACTAGGTAACCCTACCTAAGAGGGGCCCCGCC
CGACTTCCGAGGGTCGAGAGGTCAGTCAAACCCTGATCCGGCTGCTCCGGTTGAGCCAATCGAGA
GGGCCTAATAACTGGAAAAGAACTTCCTTGCGTTTAATCAGTCGGTTTATTACCGGCCCTACCGA
ACCAATTTGCCTGGCATTTCCCAGTTCTCTCAAAACAAACAACATAAGAAGGAGTGTTACCCCTT
TTCCATAGCTAAGAACTTACTTCGCTTCGTTGAAATGAGCGAATCGAGGGCTCTGGCTCCAGTGT
CCATCTGTGAGGAAAGACCACAACAGCCGAGTATGGTGCCGATGCTTGCTGCTGTCCCCTTGTGA
ACCGGCCATAATCAAGATATTTGCTGGTGTAGAGGGGCTAGGCAG
Right flanking sequence: Indices 345966 -- 346465
CTCATCATTTCATTTGTCCTCACCCTCGTGCCTAAAGTTCCGTTGCGGGAACAAGGTCACTGGAT
GAAGGACCGTTTGAAGTGTTGAGGGAGGAGACGGAACAATATCTCCTGGCATTGAGCGTGACGGC
CTCTGTTCTGTTCTGAACGGGATTTTAAGCGAATTGGACCTTCGTTTCGAGTGCAAACCTCTAGC
TTGAGTTCTTTAGAGGGAACGTTTGAAACCCGGAAGCATTCTTGTTGTTCCCAAGCCTGTTAAAG
CCGCTCCTGCCCTTTCTCACGAATCTTTTGTGGCACTACCAGGGGTAGTTTGTGGGCAAGGAGAT
CAAAAAAAGCATAGCGCTTTTGAGCCCTGCCTCTTTGAGGCGGGGGCTACTTCCAGACACTAACT
AAGTAGTTAAACACTCGGCTCCGGGGACGGTGGTGAATTTTATGAATTCTTCCCAAGCAAAAGTG
TTCTAGGACCAGAGGCAAAGGAGCGCTGATCCGGGGAAGAAGGCT
Found at i:354247 original size:5 final size:5
Alignment explanation
Indices: 354237--354281 Score: 90
Period size: 5 Copynumber: 9.0 Consensus size: 5
354227 TACTGACTTT
354237 TATAC TATAC TATAC TATAC TATAC TATAC TATAC TATAC TATAC
1 TATAC TATAC TATAC TATAC TATAC TATAC TATAC TATAC TATAC
354282 GACATTTACG
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 40 1.00
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (5 bp):
TATAC
Left flanking sequence: Indices 353737 -- 354236
CGCAAGCTGCGACGATGATGATAGGAATTTACATGGAAAGACCCAGGAAGTCCAGTAATTGGTAT
ATACCAGCATACACCAATAATGGAAGAAGGATCTCAGTATATACGTGAGTGGTGCTGGATCTGCA
CCATGTCTCTCTTTTCTTCTTCATTCTCAACAGGAATGCATCAACAAAACTGCCCTTCCATATAG
ATCGTCGTGGCATGAACTTAGTCAACATCCTTCTTACTATAAAACGACTCCTCTTCCTATTGATT
GATCTTTTAAATTGACAGGTGATGTTCTTTTGACGGTGAACCATTCCGGCACAACACTGAGCCAA
TTAGTCACTGACTGATCCGCTTTGACGTACTTGCAAGCCTAAGGCATGTGAACACTCTCCTTCCT
TGCTTTTTTCATACGCTTCTTGCTGGAGAAGGCCTATTTACGTAAAGGGAAGTGCATGAATGCTT
ACTGACCGATAATAATCTCGCGGAAGTCGATCATCTACTGACTTT
Right flanking sequence: Indices 354282 -- 354781
GACATTTACGACATTTTTTTGACGACATTTTTTTGCCAATAAGATGATAAGATCATGAGTGGAAA
GGTATCATCATAGATATGAAATCAAGATCTATATCTCTATAGCGGCCTGACATCCTTCGAATTCT
GAAAGTGCTGTAAGGCGAGCGAAGGAAGAAGCTCTTACTCACTTAAGGGTAAGGCGCTAATGCCA
CTAGCTTGCTGGCTTGCTAGAGCAGTCGCACTAGCTCCTAGCGTTTTTCAGCTGTATCCTGTGAT
CTGAAATGTGCTGTCGGAAGATAGCATGATACCCTTGCCTGGACTTGATTTGTTATACCACAGTA
TCCTGTAAACTGCATCTAAGTGTTCTTTTCTGGGCTTCTCCATGAATTGACTCACAACACTTACA
GCATATGCAATGTCCGGTCGGGTGATTGGTTGGTTGATATACCTGTAAATCAGTCTCCTATACAC
CGTAGCATCAACAAGATCGCCATCCATGTCATGAGTCAAACCGTG
Found at i:354308 original size:14 final size:14
Alignment explanation
Indices: 354289--354316 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
354279 TACGACATTT
354289 ACGACATTTTTTTG
1 ACGACATTTTTTTG
354303 ACGACATTTTTTTG
1 ACGACATTTTTTTG
354317 CCAATAAGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.14, G:0.14, T:0.50
Consensus pattern (14 bp):
ACGACATTTTTTTG
Left flanking sequence: Indices 353789 -- 354288
CAGTAATTGGTATATACCAGCATACACCAATAATGGAAGAAGGATCTCAGTATATACGTGAGTGG
TGCTGGATCTGCACCATGTCTCTCTTTTCTTCTTCATTCTCAACAGGAATGCATCAACAAAACTG
CCCTTCCATATAGATCGTCGTGGCATGAACTTAGTCAACATCCTTCTTACTATAAAACGACTCCT
CTTCCTATTGATTGATCTTTTAAATTGACAGGTGATGTTCTTTTGACGGTGAACCATTCCGGCAC
AACACTGAGCCAATTAGTCACTGACTGATCCGCTTTGACGTACTTGCAAGCCTAAGGCATGTGAA
CACTCTCCTTCCTTGCTTTTTTCATACGCTTCTTGCTGGAGAAGGCCTATTTACGTAAAGGGAAG
TGCATGAATGCTTACTGACCGATAATAATCTCGCGGAAGTCGATCATCTACTGACTTTTATACTA
TACTATACTATACTATACTATACTATACTATACTATACGACATTT
Right flanking sequence: Indices 354317 -- 354816
CCAATAAGATGATAAGATCATGAGTGGAAAGGTATCATCATAGATATGAAATCAAGATCTATATC
TCTATAGCGGCCTGACATCCTTCGAATTCTGAAAGTGCTGTAAGGCGAGCGAAGGAAGAAGCTCT
TACTCACTTAAGGGTAAGGCGCTAATGCCACTAGCTTGCTGGCTTGCTAGAGCAGTCGCACTAGC
TCCTAGCGTTTTTCAGCTGTATCCTGTGATCTGAAATGTGCTGTCGGAAGATAGCATGATACCCT
TGCCTGGACTTGATTTGTTATACCACAGTATCCTGTAAACTGCATCTAAGTGTTCTTTTCTGGGC
TTCTCCATGAATTGACTCACAACACTTACAGCATATGCAATGTCCGGTCGGGTGATTGGTTGGTT
GATATACCTGTAAATCAGTCTCCTATACACCGTAGCATCAACAAGATCGCCATCCATGTCATGAG
TCAAACCGTGATTTTGTTCAATAGGAAAGTGACATGGCCATCATT
Found at i:366967 original size:19 final size:19
Alignment explanation
Indices: 366934--366971 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
366924 CTACCCCCAT
366934 AGCCCTTACCATACCATTAA
1 AGCCCTTACCATACC-TTAA
*
366954 AGCCC-TACCTTACCTTAA
1 AGCCCTTACCATACCTTAA
366972 CACCCCATAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 8 0.47
20 5 0.29
ACGTcount: A:0.32, C:0.37, G:0.05, T:0.26
Consensus pattern (19 bp):
AGCCCTTACCATACCTTAA
Left flanking sequence: Indices 366434 -- 366933
TCGCTCATAGGGACATATCTATCCGGATAGAGGATAGTCTAGATCGATTCATAGATAGATCTCTC
TCCATATATATAGGTATCTCCGTGGATAGAGATAAAGATAGGGCTAGATCTTGATCCATTTTTAT
ATAGGGTCATAAATGGAAGTTTTTCAATTATTACTTGCTTGGTCGGAGCGTAGATGAGCGAGCAG
AGCCCAGGAAACAGGGAAGCCCGTCATAGAGCAGTCTTCTACTTCTAGTCGACTGCTGGCCTGAG
AGAAGGCGGCCTCTCTCGGGCAAAATTTCTCTTCTTTCTTTTTTATTTAGGTTTTTTTTTATGTG
GGATTGAGATGATACTATAGCGTCTTCCTCTCATCAGGAAAAAGATCATGAAAGTCTTGTTACCG
TTATCTTTATGTATATGTCGTGTAGCTTGTTTTATTGTACTTTATTAAGTCGAGACTCGATCGGT
TTCGACCAAATCCTTTGCCTCTTATCACTTCACTCCTACCCCCAT
Right flanking sequence: Indices 366972 -- 367471
CACCCCATACAACTACCACAATATCAAACCTTACCTTCCCCCCAGAATCAAAGAAAAATTGCGGA
AACTCTTAGCAGCGGCTTACCTATCCTTTTCTAAGTAACCTGGCATACGCCCCAGCCCTGATCCG
AACAGGACAACAACAATTCCAGGAGACGGGCGTCCTGTCTGTTCTGGCTGCTGAGCCGAGAATCC
GTTTTTTGATCCGCCTTGATTTTTAAGACTTTCGGTAAGTTCTGATACAGAACTGAAGTCCCTTA
TCAGAATGGTATCCTCGAGTGACTCTGAGGGGCTTCTAGTCCTTCCTTCTTGACTCGTTTCGCAA
CGACGAAGTCCATTCCATTGATTCTTTGGCCCCGGGCCTCACCGGTGAACTCGAGGGAGCTGCTA
GCTTAAGTTCTTTACTCAGCCTCAATGGGAGTTGTTCAAGCCAAGCCCCCCGGAAACAAACAGAG
TCAATAGAAAGAAGCTCCGGCGGGCGGCCCCGGGTTCAGATGGTT
Found at i:383890 original size:23 final size:22
Alignment explanation
Indices: 383859--383912 Score: 90
Period size: 23 Copynumber: 2.4 Consensus size: 22
383849 TTATTTCAAC
383859 AAACAAAAAGTGAAATAAGTTCA
1 AAAC-AAAAGTGAAATAAGTTCA
383882 AAACTAAAAGTGAAATAAGTTCA
1 AAAC-AAAAGTGAAATAAGTTCA
383905 AAACAAAA
1 AAACAAAA
383913 CAATAAGTAG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
22 4 0.13
23 26 0.87
ACGTcount: A:0.63, C:0.09, G:0.11, T:0.17
Consensus pattern (22 bp):
AAACAAAAGTGAAATAAGTTCA
Left flanking sequence: Indices 383359 -- 383858
AGTTGGGCCACTCAAGGTTCCATTGAACTATTGGGGCCGAGTTTGTACCAAGGGCGAACTGCCGC
CTATCTAGTATCTAAAGGCGACTGGTATCCTAAAGAATAGTAGAATCGAACACTCTAATTCCATT
CATTCTATAGAATGACGGTAGCCTCCGGTCTATAGACTAGTAGCGGTAGCTTTTCTAAGAAAAGG
TAGTGGGCTATACTATCCTTCTTAGTAGTGCCACCTTCGGTACGGGCTGTCCGCTAAGGATAGCC
TCTTACGCTTAGCTTACTACGGATAGCCACCTTTGGTACGGGCTGGCTGTACGAGAAAAGGAACC
ACTTGACAGTCAGTTACCTCACGCCCCTTCGACTCGAGGCTATTTTACGTGTAGCGCCATCTTCG
ATCAGCTTCCTTAGCTGGATCTTCGAATACCTTAGCAGGCCCTCCCTTCGGTCAGCCGGGCCCCT
TCGGTGAGTTCCTTAGCGGGAGCCACTCCGTTACCTTATTTCAAC
Right flanking sequence: Indices 383913 -- 384412
CAATAAGTAGTAGCATGAGATGTTCGCCCATGCGAGAAGTCATGTTCCTAGGGCATTGGGATAGG
GGATGGCCAGATTAGGATGGACAAGCAGAAGTTGCAATCGAAGAGTGGGAAGTGCCCAAGAGCGT
GACTGAGCTACGGTCCTTCCTTGGGCTCGTAAATGACTATCGGCGGTTCATTTCGAGGTACTCGA
ACCGCGCTGCCCCCTTGACCGATTTGTTGAAGAAAGACAGGCTCTGTAGTAAAGGCCTGGTCGAA
GAAGTGCCAAGAGGCCTTTTATGATTTGAAGGCCGCTGTGGCGAGTGACCCTGTGCTGCAGCTTC
CGAACCTTTCGATGCCTTTCGAAGTGCACACCGATGCGTCTGACTACGCCATTGGTGGGGTGTTA
GTCCAGGAGGGACACCCGGTTGCCTTTGAGAGTCGGAAGCTAAATGATGTAGAGAAGCGCTATAC
GGTGCAGGAGAGGGAAATGACTGCTGTGGTCCATTGCCCCGGCCT
Found at i:387945 original size:5 final size:5
Alignment explanation
Indices: 387935--387979 Score: 90
Period size: 5 Copynumber: 9.0 Consensus size: 5
387925 GGGTAACTAT
387935 GTTAA GTTAA GTTAA GTTAA GTTAA GTTAA GTTAA GTTAA GTTAA
1 GTTAA GTTAA GTTAA GTTAA GTTAA GTTAA GTTAA GTTAA GTTAA
387980 TTGCGTATCT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 40 1.00
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (5 bp):
GTTAA
Left flanking sequence: Indices 387435 -- 387934
TGGGATTCTAACCTAACGCTATTGACGAACCGATCCAATGGATCCACTCGTAACAAGTTCCTATA
TTCGGAATCGGGAAGCATTAATCACAAGCAAGATACACAGCCCATGGGAAGTCTCAAGGGGATGT
TACTAATGGAACATGTAGGAATAGTCACACTGTTTGTTTTGTTGCGTTTCATAAGGACATAAATC
TTTCTCACTATCTATCACATACCTATATCTCCCATTTGATCTAAGCCTTACTGTCTCTCTTTCTG
TGAAACAATCGGTAGACACCCTAAACCATTCTTGGCGGGGCGAAGAGAAATGAAAACTTCTTTGA
TTTTTTCTATATCGAAGGAGCGGATCTTTGATCTCCCCTTTCCGGACGCATACATCGAGAATCCT
GTGTGCAATTCATTTGGATGAGATAGATCCACCCAATTAGTCATTTAGGTTACACAGAATCGGAG
CTAGAAAAAGGGTAGGTTGAATCTGAAATCTGTCGGGGTAACTAT
Right flanking sequence: Indices 387980 -- 388479
TTGCGTATCTACCAATAAAAAAAGACTACCTTTTTTGTATGTGCTCCCGGGAAACATATGGGTAC
TCTATTCGATTGATCAGGAACAATCGAAACCAGACCAGTACGTCTTTGAATCCTGAATATGGCGA
TACCTCCGATTGTACCAACCATAATATGCCTCTCCCCCATCAATCGGTACTAGTTATTGTCATTT
GCATTCCTTGACCTCCGATGAGAAATGCGAAACGAAAGAAGGATCCTCCTGCTGGGTGCTGGGAA
TTAGATCCTCCCCCCGAAAATCGATCAATTCATTGATCGATTCATCGGATCCTAGGTCGGGACTG
ACGGGGCTCGAACCCGCAGCTTCCGCCTTGACAGGGCGGTGCTCTGACCGATTGAACTACAATCC
CAGGGAGCCTAAAAATTCTGATTATTTCTCACGATTTCATTCGAACCATTTAGTTTCGCCGTAGA
GACACGAATGATATACTGATATACATATCTACATAGATATGTACT
Found at i:391857 original size:6 final size:6
Alignment explanation
Indices: 391846--391894 Score: 98
Period size: 6 Copynumber: 8.2 Consensus size: 6
391836 ACTTAACAAT
391846 GAAGTA GAAGTA GAAGTA GAAGTA GAAGTA GAAGTA GAAGTA GAAGTA
1 GAAGTA GAAGTA GAAGTA GAAGTA GAAGTA GAAGTA GAAGTA GAAGTA
391894 G
1 G
391895 GGATTTACGA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 43 1.00
ACGTcount: A:0.49, C:0.00, G:0.35, T:0.16
Consensus pattern (6 bp):
GAAGTA
Left flanking sequence: Indices 391346 -- 391845
TCTTCCTAGTCACAGGACCAGGACCAGAGATAGGGGCCACTTGAGAAGGGTTGGATTTCTTGCCT
GGTTTTTTCCTTTTTGGGGGAGAGAAGACAGGGGGATGCGTGTGGCCAGGCTCGTGATCGTCTGC
CCAAGCAGAGCCACCTTGGGCATCGAAACTGAAGGAAGGGGAAGTAGGTTGCCACTCCTCCTTAC
TAGAGGAAGATGAAGAGGAGGGAAGGGGGAACTGTTCTTTTTTTAGTGCACAAGGGGGACTGGAA
TCAGAGACTGCAGCTCTAACAGCACTAGAGGATGGGGGAGCAGGATCCAGTGGGGAGGGTTGGGA
CTGAAGAGGTGCAGAGACAGGGTCTGAGGTGGTATTTACGGGATGAGAAGGGGGATTAGGAGTGA
TGGCAGCTTTTGATAGTTCAGGGAAAGGGGCTATCTGCAGAAGAGGAGGGTCTACCTCAGACATA
TGTTCCTGCATCAGAATTTCGAAATTCTTAACAACACTTAACAAT
Right flanking sequence: Indices 391895 -- 392394
GGATTTACGAGGCTTTCATAGGAGATGAACCAGGTTGAGATTGGACTAGAGAGGATGGAACACAA
CTTACAGAGGATGAGTCAGTATCCACAGATGAAGGAGAGGAGGGAAGGTGGTTTGAAGGGCCAGA
TTTTGAGCCTGAACCATTTACTGCAATAGGTTTGAGGTAAGTGTCCAGAGACAGATTGGGATTGG
TGGAGCTGTTGGGGGTTTGGGGAGCTCTTGAAGAAGAAGGGGGGAGGAAATAGAGTGAGAGGGAG
GGGGCCAAGGTTTACAGGTTGATCAGCTGCTGTAGGCTTAGGATGTTGATCCACTGCTGCAGACC
TAGGCGGAGATCCATGCTTGGGACAGTCTTTAGGCTGTGCCCTCTTTCAAAACAGATTTGGCAAG
GAGGATTCTCGTAAGACAAAGAAACTTCCACTGAAGATTGCCCCAACTGCACTGTGATCTGGAAA
GGGCGCGGAGCTTTCGGATCGAGCTCAACACAGATTCTCGCAAAG
Found at i:426472 original size:17 final size:17
Alignment explanation
Indices: 426452--426485 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
426442 ATAAGAATAT
426452 AAGAACTAGTAACCAAC
1 AAGAACTAGTAACCAAC
*
426469 AAGAACTATTAACCAAC
1 AAGAACTAGTAACCAAC
426486 CCATTGCTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.53, C:0.24, G:0.09, T:0.15
Consensus pattern (17 bp):
AAGAACTAGTAACCAAC
Left flanking sequence: Indices 425952 -- 426451
ATTCCGCAGCAGCAAACGCTAGTCACAATAAAAGTTTCAACGAAGCGGATTCAGTCGTCAGTAAG
GCCGAAGTCAACGGGGGTACTCTCATGAAAAAGTTAAAACCTCGGGCTAGAGGACGTAGTTACCT
GATAAAAAGACCCACCTGTCATATAACTATTGTATTGAAGGATAGATCTAAAAAGAAAACAGATC
CGGATACTTTTTTAGAAGAAAAAATGTATGGAGAGATCCTATAACAGAGAGATATTATAGAGAGA
AAAAAAATATGGGGCAAAAAATAAATCCACTTGGTTTCCGACTTGGTGAAAACCAAAGCCATCGT
TCCCTTTGGTTCGCACAATCAAAAAGTTATTCCATAGGTCTGATGAAAAAATACGAGATTGTATC
AAGAGATATGTACAAAAAAATAGAAGAGTATCCTCCAGTTTCGAAGGAATTGGAATTGCACATAT
AGAGATTCAAAAAATAAAAAGACTAACTAATAACTATAAGAATAT
Right flanking sequence: Indices 426486 -- 426985
CCATTGCTTTGTATTATCGAAATCCAAGTAAGCAGTCACTATATTCTGTATCAATCATATAGTTG
TAGCAACTGAAATCTTTTTTCAAAAATCGAGGAAAGGGAAAAGAAAATAGAAGGATGCGGGTAAA
TGGAGGGGCGAGAGAAAGAGAGAAGGAGAATATCAATGCTATAAGCTTCCAGCATGTATGGTCTA
TCAATCACCTCATATCGTAAAAGGCAATGTGATAAAGCATCAATATTGATTCGTCCATAATTAAT
TGAATACGTTTCATAAGAAAAATACAAATAAAAAAGAGCTTCGAGCCAATAAAGACTGAGGAGAT
TGGCTCGGAAACGAATTGAATTGGGAGCTCCATTGCATAATTCGGACCTAACCTTTAATGAAAGC
TATGGGAACGACGTAACCTGTGACTGCAGAAGATTCGATTGAAAACGAATCCTAATGATTCATTG
GATAGGATGGCGGAATCAACCAGGAACCAATTGACTTTTTTTTGA
Found at i:438377 original size:23 final size:23
Alignment explanation
Indices: 438347--438392 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
438337 CCCAATCATG
438347 CGAGATAGAGGAATCATTTATTA
1 CGAGATAGAGGAATCATTTATTA
438370 CGAGATAGAGGAATCATTTATTA
1 CGAGATAGAGGAATCATTTATTA
438393 TGCTATACCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.39, C:0.09, G:0.22, T:0.30
Consensus pattern (23 bp):
CGAGATAGAGGAATCATTTATTA
Left flanking sequence: Indices 437847 -- 438346
AGCATGGCATTTCAAGTTCGATATGAGCAAACTATTCTTGTTTTTTCATAAGATTATGTATCGAG
ATAGTAGTATGAAACAAAGGTTATTTCCAATTTGATCGGGGTCCATTTCAGCGTCACAAACCTTT
TCGCTTCCACGCCGGAAGCCTCTTTCCTTATGTTATGAAAGAGTGTGAAAATGAAAAAAAAAAAG
ATCCTTTTTCCCTTATTTGATCGGATCAAAAAGAAACTTTGGGATTGCTGAATCACAGACGAGAT
AATTATATAAAGCAACGGAACCATCATAGTATTTTTGACTACTCCGAAAAGAAGGATGGTAAATA
GATCATTCAACGATCTGGGTCTGATGAATTCTACTTGTCCCTTTCTTCGAGGAAAGAGGGGGAAA
AAATTCTATTGCGGAGCCGTATGCAATGCAGAAAGAATGCCTGTACGGTTATTCAATTCTATCTT
TTTTTCTTCCTGTTATTCTTTATCCCTTCTCTTCGCCCAATCATG
Right flanking sequence: Indices 438393 -- 438892
TGCTATACCATCAGGGTTATGATCCACCAACCTGCTAGTTCTTTTTATGAGGCCCCTGCGGGAGA
ATTTATCCTGGAAGCGGAAGAACTACTGAAGCTCCGCGAAACCCTCACAAGGGTTTATGTACAAA
GAACGGGCAATCCTTTATGGGTTGTATCCGAAGATATGGAAAGGGATGTTTTTATGTCAGCAACA
GAAGCCCAAAATCATGGCATTGTTGATCTTGTAGCGGTCGAAAATACCGGGAATTTCGCATAAAT
CTTTGATTCCATTTCGAATCATAATTTGAATGAACCATTACTTGATCTTTTATCTTATTATATTA
CCGGAGTAATCTAATAAATGGAAGTAATTCATAATTATCCGGTTAGGATCGATCTAAACCAGCCC
ACTTTGTATATGATTCAGCATGCCAACTATTAAACAACTTATTAGAAAGACAAGACAGCCAATCA
GAAATGTCACGAAATCCCCTGCTCTTCGAGGATGTCCTCAGCGTC
Found at i:443356 original size:13 final size:13
Alignment explanation
Indices: 443338--443364 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
443328 ATTTAAGTTA
443338 AGTTCTTTTCTCT
1 AGTTCTTTTCTCT
443351 AGTTCTTTTCTCT
1 AGTTCTTTTCTCT
443364 A
1 A
443365 TAAGAGGTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.11, C:0.22, G:0.07, T:0.59
Consensus pattern (13 bp):
AGTTCTTTTCTCT
Left flanking sequence: Indices 442838 -- 443337
TTCTAGGTTTCGTCGTAAACCTAATTGGTTACTTCCAATTACGTAAATCAATAGTTCAAACCGCA
CTCAAAGGTAGGGCATTTCCCATTGATATAGGAACTTCTGTACCAGAAACAATGGTATCTCCAAT
TATAGCCCCTCTGGGATGTAAAATATATCTTTTCTCGCCATCCCCATAGTGTATAAGACAAATGT
ATGCATTTCGATTAGGGTCATATTCTATGGTTACGATTCTACCAGATATGTCTTTTTCATTCCGT
CGGAAATCGATTTTACGGTATAGACGCTTATGGCCTCCTCCTCTATGCCCTGCGGTAATGATTCC
TCTGGCATTACGACCTTTACCACAACGATGCTGTCCATAGATCAAATTCTTTCGTGGATTGGATT
TCGCTTGACTGTCTACGGCTCCATTGCGTAGGCTCGGGGTAGAAGTTTTGTATAAGTGTATCGCC
GTGTTATTAAGTATAGTATTTTTTTTTTTTTTTTTATTTAAGTTA
Right flanking sequence: Indices 443365 -- 443864
TAAGAGGTAAAATAGAATAACCTGGTTGAAGCGTAATGATCATACGTCTGTAATGCATTGTATGT
CCCATACTAGGTCCCTCTACCCTTTCCCGGGAATCGATGACTATTTATAGCTATTACTTGGACGC
CAAAGAAGAGTTCGACCCAATGCTTTATTTCCGTCCTATTAGATCCTGATTCGACATTAGAAGTA
TATTGATTGTTCCCCAATAACCGAATACTCTTTTCTGTAAAGACTGCATATTTGATTCCATCCAT
AAATCCATTTTCTTCCCTCAGTATCGATAAGAATTCTAGTTCTTACTCTTCATATGGTATTAATA
TGGTATTAATATACCATACCAATTCGTTATGTATGGATAACGAGATCCCATTGATACAGGGCCAA
TTCCAATAGACTTACTTATGTATAGTGTATGGAATTTTCCCATTGGTGTGCATCCAGCAGGAATT
GAACCTACGAATTTGCCAATTATGAGTTGGGCGCTTTAACCATTC
Found at i:443692 original size:11 final size:11
Alignment explanation
Indices: 443676--443701 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
443666 CTTACTCTTC
443676 ATATGGTATTA
1 ATATGGTATTA
443687 ATATGGTATTA
1 ATATGGTATTA
443698 ATAT
1 ATAT
443702 ACCATACCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.15, T:0.46
Consensus pattern (11 bp):
ATATGGTATTA
Left flanking sequence: Indices 443176 -- 443675
CCTTTACCACAACGATGCTGTCCATAGATCAAATTCTTTCGTGGATTGGATTTCGCTTGACTGTC
TACGGCTCCATTGCGTAGGCTCGGGGTAGAAGTTTTGTATAAGTGTATCGCCGTGTTATTAAGTA
TAGTATTTTTTTTTTTTTTTTTATTTAAGTTAAGTTCTTTTCTCTAGTTCTTTTCTCTATAAGAG
GTAAAATAGAATAACCTGGTTGAAGCGTAATGATCATACGTCTGTAATGCATTGTATGTCCCATA
CTAGGTCCCTCTACCCTTTCCCGGGAATCGATGACTATTTATAGCTATTACTTGGACGCCAAAGA
AGAGTTCGACCCAATGCTTTATTTCCGTCCTATTAGATCCTGATTCGACATTAGAAGTATATTGA
TTGTTCCCCAATAACCGAATACTCTTTTCTGTAAAGACTGCATATTTGATTCCATCCATAAATCC
ATTTTCTTCCCTCAGTATCGATAAGAATTCTAGTTCTTACTCTTC
Right flanking sequence: Indices 443702 -- 444201
ACCATACCAATTCGTTATGTATGGATAACGAGATCCCATTGATACAGGGCCAATTCCAATAGACT
TACTTATGTATAGTGTATGGAATTTTCCCATTGGTGTGCATCCAGCAGGAATTGAACCTACGAAT
TTGCCAATTATGAGTTGGGCGCTTTAACCATTCAGCCATGGATGCTTCGGGGGGATCCTTGTACA
TCGTGAATGCCTTAATTCCAATTGAAATGAAATCCTTAGGAGGAATCAATGAGAGGACATCAATC
AGCATCATCACAGGAGAAACATGAAGTTTACTCCATCAAACTGGTATCAGAGCGGGTTCGATTCG
ATCGATCAGATCCGACCGTCCAAGATGGCGAACATGATTCAACCGCAGATTCCGCGATTGAACAA
GAGCAACTACGACAACTGGAGCATCCATATGAAGGTTTTGCTTGGATCGCAGGAGTTATGGGAAA
TCGTTGAGGATGGCTACACCGAACCGGCCACACCCGAATCAAGCA
Found at i:484609 original size:19 final size:20
Alignment explanation
Indices: 484566--484612 Score: 62
Period size: 19 Copynumber: 2.4 Consensus size: 20
484556 TTCAGATTCT
*
484566 AAAGAGGAAAAGATAAAAGA
1 AAAGAAGAAAAGATAAAAGA
484586 AAAGAAGAAAA-A-AAAAGAA
1 AAAGAAGAAAAGATAAAAG-A
484605 AAAGAAGA
1 AAAGAAGA
484613 GAATGCACGG
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
18 5 0.20
19 10 0.40
20 10 0.40
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.02
Consensus pattern (20 bp):
AAAGAAGAAAAGATAAAAGA
Left flanking sequence: Indices 484066 -- 484565
AAATGTTGAAAATTTCTATTCGACGCAATTACAACTGATCCAAATAATCAAACAATTCCAAAAAA
AGGTTGAAGAAATGGTCATACAAATTTCAATTAATCAACGACTTGGAAGAGCGAGTTCTGGAAAG
GAAAGAAGAATCAAGGGCGGATTATGGCATTCGTTTAAGAAAATCTAAACGTGTGGTTATTTATA
TTGATATTGATAAGGTCCAGAAAGGCAAGACTTACACCAGTTCTAAGAGTAAAAAAGTGTCCGAG
GTGGCTTTGATGCGTTACTCACAACAATCAGATTTTCGACGGGAGCTAATCAAAGGATCCATGCG
CGCTCAAAGACGTAAAACACCTATTTGGAAACTGTTTCAAACAAAAGTGCATTCCCCTCTTTTTT
TGGACAGAATAGACAAAACATCTTTTTTTTCTTTTGATATCTCCGGAATAATGAACCGAACCCCT
AGAAATTGGGTGGAGACAGGCCCAGAATTCAAAGCTTCAGATTCT
Right flanking sequence: Indices 484613 -- 485112
GAATGCACGGATAGCAGAGGCTTGGGATACTATTATATTTGCTCAAACAATAAGGAGTATTATGT
TAGTAACCCAATCGATTCTTAGAAAATATATAATATTGCCTTCATTGATAATAGCTAAAAATCTC
AGCCGTATGTTATTATTACAATTCCCCGAGTGGTACGAAGATTGGAAGGAATGGAATAGAGAAAT
GCATGTTAAATGCACCTATAACGGTGTTCAATTATCAGAAACAGAATTCCCAAAAAACTGGTTAA
CAGACGGTATTCAGATAAAGATCCTATTTCCTTTCTGTCTGAAACCCTGGCACAAATCCAAGCTA
CGATCCCACCATAGAGATCGAATGAAAAAGAAAGGAAAAAAAGAAGATTTTTGTTTTTTAACAAT
CTGGGGAATGGAAACTGAAGTACCTTTTGGTTCTCCCCGAAAACGGCCTTCCTTTTTTGGACCCG
AATTCGAAAAAAGAATGAAAAAAACGAAAAAAAAGAGTCGAAAAG
Found at i:497352 original size:24 final size:24
Alignment explanation
Indices: 497304--497353 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
497294 AAAATTTCTT
* *
497304 CTTCATTTCGATCAAGCTTCCTTC
1 CTTCATTTCGATCAAACCTCCTTC
*
497328 CTTCATTTCGATCAAACCTCTTTC
1 CTTCATTTCGATCAAACCTCCTTC
497352 CT
1 CT
497354 ATTAATCTGG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.18, C:0.34, G:0.06, T:0.42
Consensus pattern (24 bp):
CTTCATTTCGATCAAACCTCCTTC
Left flanking sequence: Indices 496804 -- 497303
ATCGGATTGAATGGGATGACAGTTTTTCATTCCGAATCTGTAAAATCATAATTTCCATCAAATCA
CACATCGCAATATACTAAGCCCTCTAACTCCTTAAGAGGTTTATCTAAAAGATTCGCGATATAAC
TAGGAAGACGTTTCAAATACCACACATGAGTCACTGGGCATGCCAGTTTGATGTATCCCATTTGA
TATCTTCGTATCCGAGAATCAACAAATTCGACTCCGCATTGTTCACAAAATTTCGTATCTTCTTT
TTCATCTCCGATCACTCCTCGAGAATTTCCACAAGCGGTCCAAAGATTCTTTCACAAAACAACCC
ATCCTTTTCCGGTTTATTGCTTTTGTAATTCAAAGTATAAGGTTTTCTTACCTCTCCAACCCTAT
CTCCATTAGGTAGGATTTTGCTAGCCCAAGAGCTTATTTGTTGAGGAGAAGCTGATCCAATTCGA
AGTTGTTGATGTCTATACTGATCGATCATAGAAGAAAAATTTCTT
Right flanking sequence: Indices 497354 -- 497853
ATTAATCTGGAAGTTTTTCTCAGATACAAGGAAATGATTCAGTTCTAGAGCCAAAGATCGCAGTT
CTCGAACGAGCAATCGAAAAGATTCCGGAGCATCCTCGGGTTTAGGTATTGTTCCTCCAATGATC
GTAGTACCAAGTACTTCTTGACGAGCTCTAATATGATCCGATTTATAAGTAAGCATCTCTTGTAA
AATATGAGCAACACCAAATCCCTCGAGAGCCCAAACTTCCATTTCTCCTACTCGTTGCCCCCCTT
GCTTGGCCCTTCCCCGAAGGGGTTGTTGTGTAACAAGTGCATAATGTCCACTGGAACGCCCATGG
ATTTTATCATCAACTTGATGGATTAATTTCAGAATATAGGACTTTCCTATTATAACAGGTTGCTC
AAAAGGATCTCCTGTTCTTCCATCAAATATTCTGCTTTTTCCCGGGTATTCGGGTTCAAATACCC
ACGGATTTGCTGTTTGCTTACTGGCTGAATATAATTCAGGAAACA
Found at i:521029 original size:21 final size:20
Alignment explanation
Indices: 520995--521034 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 20
520985 ACAGAAGGGT
*
520995 GAAGGCTCTCTCAATCAAAG
1 GAAGGCTCTATCAATCAAAG
521015 GAAGGTCTCTATCAATCAAA
1 GAAGG-CTCTATCAATCAAA
521035 AGACCTGTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.38, C:0.23, G:0.17, T:0.23
Consensus pattern (20 bp):
GAAGGCTCTATCAATCAAAG
Left flanking sequence: Indices 520495 -- 520994
CAAAGAACATTTTCTTTCTTCTGCGTCTGTTGATGATGCTGAAGCGGATTTCACTTCAACTTGAA
AGTGGTGGATTTCCACTGGCGGCTTAAAAAACAGTTGGCTTGCTTTCCTGGCTCCGGTAGGCTTA
TCGCCGAGGACAAACCAACCGATCTACGCCATTTACATTGAGGGGCCTCCTTAGAAGACTGACTG
GTCAGAAATAGGTTATCCACCGACAAGAGAGGGCTCCACTACGAAGGGACGAATATCGTTTCACA
TCTGATGAAATTGAAACAACTAATCTAATGGCATATCATATATAGTTTCATCGTCTTGTAGATGT
ACTTAATAGATGCACTAAATCGATAGGCAAAAAAAAGGTGCTTTTCGGTCACCATTGGCTTGGGG
CGTCCTCTCTCTAACTGAACAACTGTAAAGTCAACCTTCTTTGCTTAAGCGCTTCTCTTCTCTGG
GCGCCTCCCATTGGGAATTTTATACCCTTCACAGAACAGAAGGGT
Right flanking sequence: Indices 521035 -- 521534
AGACCTGTCACTCTCCATGTTCTCCGGAATCACAATCGTTCAAAGAAGAAATTCATGAAAAGCCC
CATCCTCAAAGCTATAGGTTTTTTCACCCTGTCTATTTGTTGTCCTCCTATTTGTCCTCCACGAA
AGTCAGCTCGACTCACTTCAAGCCTCGTTGTTTTCACGTTCCTAGTCACAAGACTACTTTTCTTG
GGGCCCCCTTATCCCTTATAATATAAATAATTGGGCCTAGCCATTATCGCTTTAGGGGGTCTTCT
CAACAATATGGTGGTTCTGCTTCTTATCTAGGGAGGGGTACTGGTTTTGGCGGAGATTTTTGTGA
TCTTATTCATTGTGCCCAATGCTCCTCTTCTAGCGACTCGACACCAGAGACCCCGAAAGGGCGCC
AAGACTTGACTATACGCCTGGGAAAGAATATGGGTCCTCCCTATCAATTGGCGAGGCCTCACGTA
GTACGCTTCTTTCCTTCCGAACTAGGAAAAGGCAGTTATGACATC
Found at i:530292 original size:27 final size:27
Alignment explanation
Indices: 530259--530311 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
530249 AGAAGCTATG
530259 CGCCCTTACTTTACTTAGAAGCTCCCT
1 CGCCCTTACTTTACTTAGAAGCTCCCT
530286 CGCCCTTACTTTACTTAGAAGCTCCC
1 CGCCCTTACTTTACTTAGAAGCTCCC
530312 GGAACGACCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.19, C:0.38, G:0.11, T:0.32
Consensus pattern (27 bp):
CGCCCTTACTTTACTTAGAAGCTCCCT
Left flanking sequence: Indices 529759 -- 530258
AGAAAGCAAGAGGAAGTAGACCTCAATAGGATCCCATCTCCCTACGGCCGGAACGAAAAGTCCCC
AACAGGACTTGGTTTACGTGGAGCCACACGATCCCAGTCACGGTAGGGTGAAGATCACTCTTGCT
CACTCGGTTCCCTGCACGATACGAGTCTCGGTCAGCTGCTCAGCACAGTCACGGTAGGGTGGTAT
GAATAAAGAACCTGAGCTCGAGAAGTCTCGAGGGGAGAGCTCCCTTCATAGCTCGACCCGAGAGT
TCCTTCTATCCTCTAAGTGAAGTCGTGTAGTCTCCCCGAAGAAGTCGTCCTCGGGGAGGACTTCG
AGTGTAGCACCGACACGTCTCGAGAGCTACAGAGTGACGTGTTTTATATTATCTCTCTCTGTCTC
GAGAGCTCAAGAGCAGTCTCGCCCTCGGTCTCCCTCGGTACAAGACAAGGGTTATTGGGATTGTT
AAGGAAACCCCTTAACAGACAAGGTGTGTAAGAAAAGAAGCTATG
Right flanking sequence: Indices 530312 -- 530811
GGAACGACCTAAAGAGTCACGTACGAAACAGAGGGGCTTTGGGATTCGAACCCAACTGTTCCACG
ACCCCCTCATGTCATAACACGACGACTAACATATCGACTACGAATGACCACCACTGTGCGTATGG
CGTATTGCTTTCGATTCATCTCACTCGATCGATAGAAGGAGGGTAGGAGTATGCTATTCAATGAA
TCGCCACGCTATTCTCTCCTATGTTGTATCGCTCTTCTCTTGCTTCTCACTAGTCTTTTCGTCTC
ACTACGCTTTTTGCTCTTCTAACAAGTGAACTCAATGCCAGGGCGTGAACACGTCTTGTAGCCTA
TTGGGCTTCTACGAAGGATCTCTCCCATCAATGATTCTACTAGACTAGGCACTTGCTGCTTCTGT
GATGAGTGCCTCGATCTGACTATTTAGTAGTCACTGCTATGGCACTCTTTTTCTTTCCCGCGAGG
CCGGGCGGATACACGTTATGAAGGCGGCCCACGCCTTTGTCGGGG
Done.