123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_063145
Parameters: 2 7 7 80 10 50 500
Length:  535805

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15606--15668	21	3.0	21	90	0	108	14	11	23	50	1.74
73887--73932	18	2.6	18	89	0	65	19	28	34	17	1.94
96796--96836	5	8.4	5	94	2	66	14	0	19	65	1.26
137003--137118	19	6.4	19	72	11	118	18	25	24	31	1.97
137022--137080	16	3.5	16	69	13	55	15	20	32	32	1.93
137002--137099	35	2.8	35	100	0	196	17	24	26	31	1.97
143063--143101	19	1.9	19	85	10	51	15	25	25	33	1.95
154558--154597	20	2.0	20	90	0	62	52	0	17	30	1.45
156629--156700	35	2.1	35	92	5	119	15	27	20	36	1.93
177900--178042	21	6.8	21	85	7	134	20	20	34	25	1.96
177926--178055	63	2.1	63	91	2	208	20	23	33	23	1.97
177947--178055	21	5.2	21	82	8	98	20	23	33	22	1.97
187402--187441	21	2.0	21	90	5	64	17	25	5	52	1.64
189684--189736	24	2.2	24	100	0	106	33	7	28	30	1.85
220459--220486	13	2.2	13	100	0	56	7	7	21	64	1.43
253587--253658	35	2.1	35	92	5	119	33	23	27	15	1.95
261497--261609	58	1.9	58	98	0	217	33	15	27	23	1.95
266074--266107	16	2.0	17	88	11	52	41	5	29	23	1.78
271335--271374	18	2.2	18	86	13	55	5	25	15	55	1.60
279043--279083	16	2.4	18	80	12	50	78	4	17	0	0.93
286328--286380	27	2.0	26	89	7	81	22	26	22	28	1.99
287295--287343	18	2.7	18	93	0	80	44	12	22	20	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
287388--287451	24	2.7	24	87	0	92	10	32	32	23	1.89
287391--287466	24	3.2	24	83	3	73	13	31	32	22	1.92
323266--323314	15	3.3	15	97	0	89	44	8	0	46	1.33
325252--325340	44	2.0	44	93	4	153	30	19	29	21	1.97
332425--332486	31	2.0	31	93	0	106	24	14	35	25	1.93
339716--339795	16	4.8	16	77	8	88	16	23	28	31	1.96
339716--339795	32	2.4	34	83	6	101	16	23	28	31	1.96
341097--341147	18	2.8	18	74	11	59	49	1	45	3	1.32
345925--345965	20	2.0	20	90	0	64	31	26	26	14	1.95
354237--354281	5	9.0	5	100	0	90	40	20	0	40	1.52
354289--354316	14	2.0	14	100	0	56	21	14	14	50	1.78
366934--366971	19	2.0	19	85	10	51	31	36	5	26	1.79
383859--383912	23	2.4	22	93	3	90	62	9	11	16	1.52
387935--387979	5	9.0	5	100	0	90	40	0	20	40	1.52
391846--391894	6	8.2	6	100	0	98	48	0	34	16	1.46
426452--426485	17	2.0	17	94	0	59	52	23	8	14	1.69
438347--438392	23	2.0	23	100	0	92	39	8	21	30	1.84
443338--443364	13	2.1	13	100	0	54	11	22	7	59	1.56
443676--443701	11	2.4	11	100	0	52	38	0	15	46	1.46
484566--484612	19	2.4	20	86	10	62	76	0	21	2	0.89
497304--497353	24	2.1	24	88	0	73	18	34	6	42	1.74
520995--521034	21	2.0	20	90	5	62	37	22	17	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
530259--530311	27	2.0	27	100	0	106	18	37	11	32	1.87

Tables:   1

The End!