123.fas.2.7.7.80.10.50.500.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_053368
Parameters: 2 7 7 80 10 50 500
Length:  1122546

Tables:   1   2   

This is table  2  of  2  ( 148 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
941893--941945	23	2.3	23	84	12	65	49	11	18	20	1.78
952683--952803	64	1.9	64	100	0	242	35	26	24	13	1.92
964891--964923	13	2.5	13	100	0	66	33	15	33	18	1.92
973815--973841	3	9.0	3	100	0	54	33	33	33	0	1.58
975707--975732	13	2.0	13	100	0	52	53	23	15	7	1.67
983512--983577	33	2.0	33	100	0	132	15	21	18	45	1.85
990128--990201	27	2.8	28	83	8	109	35	18	29	16	1.93
998397--998441	23	2.0	23	90	0	72	44	15	22	17	1.86
1025583--1025626	22	2.1	22	87	8	65	29	4	6	59	1.44
1026205--1026266	31	2.0	31	96	0	115	27	16	24	32	1.96
1044831--1044880	24	2.0	25	96	3	93	40	8	20	32	1.81
1051707--1051748	15	2.8	15	92	0	66	19	35	2	42	1.64
1054864--1054943	25	3.9	21	84	15	82	15	23	23	37	1.93
1054889--1054943	17	3.0	19	89	10	96	16	25	25	32	1.96
1059272--1059309	19	2.0	19	89	0	58	23	21	7	47	1.77
1063666--1063719	27	2.1	25	90	10	83	24	9	25	40	1.85
1063903--1064022	41	3.0	40	77	9	127	10	29	28	31	1.91
1065773--1065894	64	1.9	64	100	0	244	35	27	24	13	1.92
1065906--1065953	23	2.1	23	100	0	96	18	12	20	47	1.81
1089345--1089398	27	2.0	27	96	0	99	12	37	33	16	1.87
1091616--1091671	28	2.0	28	96	0	103	23	28	7	41	1.80
1091748--1091780	17	1.9	17	100	0	66	48	15	24	12	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1091765--1091811	22	2.1	22	84	0	58	31	17	38	12	1.87
1094785--1094912	64	2.0	63	93	6	222	32	29	22	15	1.95
1094918--1094963	23	2.0	23	100	0	92	17	13	21	47	1.81
1105011--1105055	18	2.4	18	85	3	54	13	26	6	53	1.64
1110267--1110341	38	2.0	38	97	0	141	34	26	29	9	1.88
1115027--1115066	19	2.1	19	90	9	64	20	25	7	47	1.75

Tables:   1   2

The End!