123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_053368
Parameters: 2 7 7 80 10 50 500
Length:  1122546

Tables:   1   2   

This is table  1  of  2  ( 148 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2389--2457	23	3.0	23	95	0	120	46	23	14	15	1.83
2470--2593	64	1.9	63	87	9	180	12	23	29	33	1.92
8587--8617	15	2.0	16	93	6	55	22	32	19	25	1.97
16538--16583	24	1.9	24	86	0	65	17	19	23	39	1.92
33487--33517	6	5.2	6	96	0	53	0	51	19	29	1.47
34859--34883	9	2.8	9	100	0	50	64	12	12	12	1.51
34963--34996	9	3.8	9	100	0	68	64	11	11	11	1.50
36854--36922	23	3.0	23	100	0	138	47	21	13	17	1.81
37037--37071	17	2.1	17	100	0	70	45	17	25	11	1.81
51047--51134	44	2.0	44	100	0	176	22	25	25	27	2.00
52914--52949	18	2.0	18	94	0	63	22	13	25	38	1.91
56504--56538	17	2.1	17	100	0	70	11	25	17	45	1.81
60015--60092	39	2.0	39	87	5	113	21	33	14	30	1.93
73627--73667	20	2.0	20	90	0	64	31	26	26	14	1.95
84249--84318	23	3.0	23	100	0	140	48	21	12	17	1.80
103535--103580	23	2.0	23	100	0	92	21	17	17	43	1.88
112701--112758	6	10.0	6	76	16	52	37	3	0	58	1.15
112715--112746	15	2.1	15	100	0	64	37	6	0	56	1.25
112701--112751	11	4.5	11	76	18	52	37	3	0	58	1.16
112760--112837	2	43.5	2	70	21	57	51	0	1	47	1.09
112739--112827	29	3.1	27	74	18	81	48	0	0	51	1.00
112750--112836	13	6.3	13	81	16	86	50	0	1	48	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112755--112827	14	4.8	16	71	23	68	50	0	0	49	1.00
112757--112840	27	3.0	28	80	16	93	52	0	1	46	1.08
125320--125354	17	2.1	17	100	0	70	45	17	25	11	1.81
127384--127423	20	2.0	20	100	0	80	35	5	20	40	1.74
137489--137557	23	3.0	23	100	0	138	47	21	13	17	1.81
137672--137706	17	2.1	17	100	0	70	45	17	25	11	1.81
140512--140559	23	2.1	23	100	0	96	47	20	12	18	1.81
140571--140691	64	1.9	64	100	0	242	13	24	26	35	1.92
144086--144206	64	1.9	64	91	6	201	35	27	24	12	1.91
144219--144264	23	2.0	23	100	0	92	17	13	21	47	1.81
148481--148519	20	2.1	18	85	9	51	66	2	7	23	1.30
152727--152772	23	2.0	23	100	0	92	17	13	21	47	1.81
177964--178001	17	2.2	17	100	0	76	47	23	18	10	1.79
177998--178034	17	2.2	17	90	0	56	37	13	35	13	1.84
185880--185950	23	3.1	23	100	0	142	18	12	21	47	1.81
191884--191953	23	3.0	23	100	0	140	48	21	12	17	1.80
191966--192086	64	1.9	63	88	6	181	13	23	28	34	1.92
202409--202443	17	2.1	17	100	0	70	45	17	25	11	1.81
205998--206033	18	2.0	18	94	0	63	38	25	13	22	1.91
207813--207900	44	2.0	44	100	0	176	27	25	25	22	2.00
214274--214321	23	2.1	23	100	0	96	18	12	20	47	1.81
224035--224080	23	2.0	23	100	0	92	47	21	13	17	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
224093--224213	64	1.9	63	88	6	181	13	23	28	34	1.92
231903--232017	23	5.0	23	81	12	155	46	20	16	16	1.85
232030--232215	64	2.9	64	95	4	324	12	24	27	35	1.91
265535--265626	23	4.0	23	94	0	166	46	22	14	16	1.82
265639--265824	64	2.9	63	89	5	286	12	23	29	34	1.92
272154--272208	27	2.0	27	89	3	83	27	23	21	27	1.99
286588--286643	28	2.0	28	96	0	103	23	28	7	41	1.80
286720--286752	17	1.9	17	100	0	66	48	15	24	12	1.78
286737--286783	22	2.1	22	84	0	58	31	17	38	12	1.87
289890--289935	23	2.0	23	100	0	92	17	13	21	47	1.81
299983--300027	18	2.4	18	85	3	54	13	26	6	53	1.64
308524--308589	33	2.0	33	100	0	132	15	21	18	45	1.85
330044--330083	19	2.0	21	86	13	59	57	7	15	20	1.61
335427--335495	23	3.0	23	100	0	138	17	13	21	47	1.81
337593--337618	12	2.2	12	100	0	52	46	23	30	0	1.53
337607--337660	18	3.0	17	81	5	63	40	25	25	7	1.82
337728--337790	23	2.7	23	100	0	126	11	19	25	44	1.83
340953--341031	39	2.0	39	97	0	149	21	27	18	31	1.97
343779--343835	30	1.9	30	88	0	87	21	14	21	43	1.87
364285--364312	13	2.2	13	100	0	56	0	28	7	64	1.20
375149--375269	64	1.9	64	100	0	242	35	26	24	13	1.92
375281--375328	23	2.1	23	100	0	96	18	12	20	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
376417--376446	12	2.5	12	100	0	60	40	26	26	6	1.81
399127--399181	22	2.5	22	93	0	92	14	18	36	30	1.91
409973--410041	23	3.0	23	100	0	138	17	13	21	47	1.81
411974--412003	16	1.9	16	93	6	53	40	23	26	10	1.86
412034--412070	18	2.1	18	94	0	65	18	18	24	37	1.94
412863--412906	17	2.8	15	80	12	52	31	20	22	25	1.98
417116--417182	33	2.0	33	100	0	134	41	19	20	17	1.90
419205--419244	18	2.3	18	91	4	64	40	37	5	17	1.72
419660--419703	23	1.9	23	100	0	88	45	25	15	13	1.83
425342--425423	42	2.0	42	82	4	103	12	25	31	30	1.92
432491--432523	17	1.9	17	100	0	66	12	24	15	48	1.78
437033--437071	19	2.1	19	100	0	78	48	25	15	10	1.76
475661--475714	18	3.0	18	81	5	65	7	25	25	40	1.82
475703--475728	12	2.2	12	100	0	52	0	30	23	46	1.53
477826--477894	23	3.0	23	100	0	138	47	21	13	17	1.81
477907--478027	64	1.9	64	93	3	208	13	22	28	35	1.92
496356--496429	26	2.8	28	83	8	109	16	29	18	35	1.93
508924--508988	32	2.3	26	73	26	76	38	21	12	27	1.89
511661--511729	23	3.0	23	100	0	138	17	13	21	47	1.81
513827--513852	12	2.2	12	100	0	52	46	23	30	0	1.53
513841--513894	18	3.0	17	81	5	63	40	25	25	7	1.82
522005--522032	14	2.0	14	100	0	56	50	21	21	7	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
535840--535895	28	2.0	28	100	0	112	32	28	14	25	1.94
541417--541467	26	2.0	26	96	0	93	33	15	5	45	1.71
544140--544176	19	1.9	19	100	0	74	32	18	10	37	1.86
569989--570014	12	2.2	12	100	0	52	15	23	7	53	1.67
590723--590758	18	1.9	19	88	5	56	36	8	36	19	1.82
600215--600261	24	2.0	24	95	4	87	48	21	12	17	1.79
608429--608458	15	2.0	15	93	0	51	26	23	13	36	1.92
617637--617702	33	2.0	33	100	0	132	15	21	18	45	1.85
639008--639044	18	2.1	18	90	10	58	5	32	21	40	1.76
648246--648315	23	3.0	23	100	0	140	17	12	21	48	1.80
651083--651125	18	2.4	18	81	18	54	34	25	20	18	1.96
657344--657388	21	2.1	21	87	0	63	13	26	26	33	1.93
709483--709531	24	2.0	24	100	0	98	63	4	28	4	1.31
711316--711363	24	2.0	24	87	0	69	20	29	22	27	1.99
711462--711495	17	2.0	17	100	0	68	41	17	17	23	1.90
712398--712432	18	1.9	18	94	0	61	11	20	25	42	1.85
720307--720342	18	2.0	18	94	0	63	41	33	13	11	1.80
720496--720528	17	1.9	17	100	0	66	12	24	15	48	1.78
733786--733826	20	2.0	20	100	0	82	34	14	31	19	1.92
735176--735201	4	6.5	4	100	0	52	76	0	0	23	0.78
772210--772254	21	2.1	21	100	0	90	35	26	13	24	1.92
782190--782260	26	2.6	28	82	8	103	16	28	19	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
788833--788913	23	3.5	23	96	0	144	18	13	23	44	1.85
794016--794053	19	2.0	19	100	0	76	26	26	15	31	1.96
799747--799783	18	2.1	18	89	0	56	24	27	21	27	1.99
820547--820593	24	2.0	24	95	0	85	34	31	19	14	1.92
834879--834999	64	1.9	64	100	0	242	35	26	24	13	1.92
835011--835058	23	2.1	23	100	0	96	18	12	20	47	1.81
866063--866097	18	1.9	18	94	0	61	45	20	28	5	1.73
890554--890605	23	2.3	22	84	12	70	30	17	25	26	1.97
892301--892356	28	2.0	28	92	0	94	30	17	14	37	1.90
907718--907749	16	2.0	16	100	0	64	37	12	25	25	1.91

Tables:   1   2