Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_051990
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 281056
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Found at i:17994 original size:14 final size:14
Alignment explanation
Indices: 17975--18001 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
17965 CTTTCCCCCT
17975 TTTCTTTTTCTTTA
1 TTTCTTTTTCTTTA
17989 TTTCTTTTTCTTT
1 TTTCTTTTTCTTT
18002 TTAGGCATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.04, C:0.15, G:0.00, T:0.81
Consensus pattern (14 bp):
TTTCTTTTTCTTTA
Left flanking sequence: Indices 17475 -- 17974
GGGCCTTACTTATTCAGGGGGGTGGGGGAACCGTAGGAAGGGGGGACGAACCGCCGAATTTACAT
CTGAAATCGCCAACATGAACACAAACGAAATCTTTAATTTCGTATAGAAAGAAAACGAACCACTT
CTATTCTCGGAGCCCACGGAGCGGTATATGAAGAATGGCTTTTTGGTCCCTTTCGTCCAGTGGTT
AGGACATCGTCTTTTCATGTCGAAGACACGGGTTCGATTCCCGTAAGGGATAGGTACTCATTCCC
GGCCGCTTTCAGTTAGTGTTCATTGCTGAGTGATCGCTCGCTATCTGGCTGGAAAAGGTGGTCCG
GAAGCTTCCTCTCTCCCAGCAAGCAAGATGAGATCACCACTTCTCTCGGACTTCCTTTACTTCGT
AACCTTAGCTTTAGATGTCCTTTCATAGATTCTCGAACCTCCGACAGACATAATATCCATGCATG
CGTTCTTTCTCTCCTCCCCTCAGCCATAGAGTCATCTTTCCCCCT
Right flanking sequence: Indices 18002 -- 18501
TTAGGCATTGAACCCCGCCGCTCCGTGGGGTGCTGAGTGGTGTCCTCCCCTCCCTAATACCTAAT
ACATAGTTCCGTCTATGGAGCCTAAAGCTTCAACCATGGCATAGCAGTAAGCAGTAAGTTGGCCT
AGTCTCTCGCCCAGCCTTCGCCTTCTTCAGTGGCCAAGTTGAAGCGTTCACCGGTTCTTCGGCCT
ACCACCTTGATCAAGGTTGAGCTTGTTTCATTGAAGCTAATGCTATGCTGCCCTTCCCTTGTTCA
AGAGAAAGCGAGGACTTTCTTTTAGCTACCGGCCTAAACAAAAGAGATTAGCCTCTTGATCGATC
GATTGATTGGATCGAAGTACGAAGGGCTTGATTGAAGTGTGAGATCAGCCCAAGACTAAGGCCGA
GCAACTAGCTGCTGCAGGATTGGACGTCTATCTATCTCACCACGCTCCCCTACTCCTATAAAGGC
CGGCAGAAGGAAAGCTCGTTACCGCAGCGCTCGTTCACCCCTTCG
Found at i:23683 original size:39 final size:39
Alignment explanation
Indices: 23628--23706 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
23618 CCCATCCTTC
*
23628 AATATCATGATTGGGTCGACCAGGCCAGATCATGAGTGA
1 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
*
23667 AATATCATGATCGGGTCGACTAGGCCAGATCATGAGTGA
1 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
23706 A
1 A
23707 TAGAAAATCG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.32, C:0.18, G:0.28, T:0.23
Consensus pattern (39 bp):
AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
Left flanking sequence: Indices 23128 -- 23627
GGAAGCCGGCTTGTGCTGGATTCCTGCATACCTCTGGCAGGCATCGCAGCTCTTAGCATGTGCTA
CGTAATCTGCAAGGACCGTAGGCCAGTAGTGGCCATGTCTCCGGATCTCTCGAATTTCCCTCAGC
GCGCTCGATCTACCTATCTTTCTGAGTTTGATTGGTTTTCGCTCCAGCTGACCTTTCCATTTAAT
CACTGACAAAACCTACCTTTCAATTCTTCTTACCCTATGAGCTTTCAGCAAAGGACAGATTTCTT
GGTCCATTGACATCGATCAACGAAATAGACCTCCTTCTTTCACTTTTGTCGTTGTCTTCCAATTC
AAAGAGCCCCATTAAGTAAGTGTTCCGCGAGAAAAGAGAGGCTGACATCTTTTCTTATCTATCTA
TTTTCGTAAATGAAGAAGATAAGTGAGAGCTTACTGACTGCATCTTCTAAGAAGGGCTTGGAAGA
AGAAATAGAATCTCCTTTCTTTTTCGAGAAAAGGTCCCATCCTTC
Right flanking sequence: Indices 23707 -- 24206
TAGAAAATCGAAAATGTACATAGCAGTTCCAGCTGAAATACTTGGAATAATTCTACCACTTCTAC
TAGGAGTAGCCTTTTTAGTGCTAGCTGAACGTAAAGTAATGGCTTTTGTGCAACGTCGAAAGGGT
CCTGATGTAGTGGGATCGTTTGGATTGTTACAACCTCTAGCAGATGGTTTTAAATTGATTATAAA
AGAACCTATTTCACCAAGTAGTGCAAATTTCTCCCTTTTTAGAATGGCTCCAGTGGCTACATTTA
TGTTAAGTCTGGTCGCTCGGGCCGTTGTACCTTTTGATTATGGTATGGTATTGTCAGATCCGAAC
ATAGGGCTACTTTATTTGTTTGCCATATCTTCGCTAGGTGTTTATGGAATTATTATAGCAGGTCG
GTCTAGTAATTAGGGGGCGGCCGTTCGGTCGCCTATGATACTAGGATCAATAGGTCAAAAATGGG
TTTGTGCCGCAGGTGTTGAACGATCCACTCTACACAGGTGTGGGC
Found at i:35974 original size:11 final size:10
Alignment explanation
Indices: 35954--36005 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 10
35944 CGGAATGAAT
35954 AAAAAAAGAA
1 AAAAAAAGAA
35964 AAAAGAAAGAA
1 AAAA-AAAGAA
*
35975 AAATAAAA-TA
1 AAA-AAAAGAA
*
35985 AAGAAAAGAA
1 AAAAAAAGAA
*
35995 AAGAAAAGAA
1 AAAAAAAGAA
36005 A
1 A
36006 CTGGTTCACG
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
9 4 0.11
10 19 0.53
11 12 0.33
12 1 0.03
ACGTcount: A:0.83, C:0.00, G:0.13, T:0.04
Consensus pattern (10 bp):
AAAAAAAGAA
Left flanking sequence: Indices 35454 -- 35953
ACTTCAAGCAGTGGAAACAACAAAAGATGCGCTCCAAGTCCTTGGGCTGTTGAACAGAATCCAAC
CACACCGGAATGGATGGTACAAAGTCCTCCAGCTTTTCATACTTTTGGAGAACTTCCAGCTATCA
AGGAGACGAAAAGCTCTGTGAAGTAAAAGAAAAAAAGGTCGCCGATTGCTACTAAGAACCTAACA
GAACTTTTCAAAATTGAAAACGGATCAGTCGACCTGGTCTACGAATCTATTCTAACTATCAACGA
ATTCTTCAAATTTTAGGTGGGATGGGGATTGTAATTATTTATACTTCTCGAGGTATAATGACAGA
CCGGGAGGCTAGATTCGAAGGAATCGGCGGATCAATTTTGTGTTATATATGGTATTCTGATATCC
GAATTAGATCCTAAATTTACTATTTGTGAAAAAAAGAGAAAGGGCGGGTTGTATAATCTCACTCC
TCCCCCATTAGTTGATACTTCAAGGAGGTTTTATCCGGAATGAAT
Right flanking sequence: Indices 36006 -- 36505
CTGGTTCACGTAAGAATGGACGTCTTGGTTCACGCAAGAGTGCACGTAGAAAAAGGACTTATTCA
TGTTCAAGCAAGCTTCAACAATACCATTGTGACTGTTACAGATGTAAGGGGTCGGGTGGTTTATT
GGGCCTCCGCCGGTACTTGTGGATTCCGGGGTACAAGAAGAGGGACACCGTTTGCTGCTCAAACT
GCAGCGGGAAATGCTATTCGTACAGTAGTGGAGCAAGGTATGCAACGAGCGGAAGTGATGAAAAA
GGGTCCTGGTCTCGGAATCCCATCTTCCAGGGTCAGGAGCCACGGAGCCAGAAGACCGTTCGACG
ATCCTACTTCTGATGTCATCCCCTTCTGTTCCCTCCCTGTTGAATATCCCAACTATTCTCTATCA
ATTCCGGGATGGATCATGAAAGATTTTGTCTTGAAATGCCGATAAGGAATAGCCAGTTATAGAAG
CGGGTGGCAGGGAATGAAAGCAAGCACTCCTGTGCTATCAAAGTG
Found at i:35987 original size:15 final size:16
Alignment explanation
Indices: 35951--36005 Score: 62
Period size: 15 Copynumber: 3.6 Consensus size: 16
35941 ATCCGGAATG
35951 AATAAA-AAAAGAAAA
1 AATAAAGAAAAGAAAA
* *
35966 AAGAAAGAAAA-ATAA
1 AATAAAGAAAAGAAAA
35981 AATAAAGAAAAGAAAA
1 AATAAAGAAAAGAAAA
*
35997 GA-AAAGAAA
1 AATAAAGAAA
36006 CTGGTTCACG
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
15 25 0.76
16 8 0.24
ACGTcount: A:0.82, C:0.00, G:0.13, T:0.05
Consensus pattern (16 bp):
AATAAAGAAAAGAAAA
Left flanking sequence: Indices 35451 -- 35950
ATCACTTCAAGCAGTGGAAACAACAAAAGATGCGCTCCAAGTCCTTGGGCTGTTGAACAGAATCC
AACCACACCGGAATGGATGGTACAAAGTCCTCCAGCTTTTCATACTTTTGGAGAACTTCCAGCTA
TCAAGGAGACGAAAAGCTCTGTGAAGTAAAAGAAAAAAAGGTCGCCGATTGCTACTAAGAACCTA
ACAGAACTTTTCAAAATTGAAAACGGATCAGTCGACCTGGTCTACGAATCTATTCTAACTATCAA
CGAATTCTTCAAATTTTAGGTGGGATGGGGATTGTAATTATTTATACTTCTCGAGGTATAATGAC
AGACCGGGAGGCTAGATTCGAAGGAATCGGCGGATCAATTTTGTGTTATATATGGTATTCTGATA
TCCGAATTAGATCCTAAATTTACTATTTGTGAAAAAAAGAGAAAGGGCGGGTTGTATAATCTCAC
TCCTCCCCCATTAGTTGATACTTCAAGGAGGTTTTATCCGGAATG
Right flanking sequence: Indices 36006 -- 36505
CTGGTTCACGTAAGAATGGACGTCTTGGTTCACGCAAGAGTGCACGTAGAAAAAGGACTTATTCA
TGTTCAAGCAAGCTTCAACAATACCATTGTGACTGTTACAGATGTAAGGGGTCGGGTGGTTTATT
GGGCCTCCGCCGGTACTTGTGGATTCCGGGGTACAAGAAGAGGGACACCGTTTGCTGCTCAAACT
GCAGCGGGAAATGCTATTCGTACAGTAGTGGAGCAAGGTATGCAACGAGCGGAAGTGATGAAAAA
GGGTCCTGGTCTCGGAATCCCATCTTCCAGGGTCAGGAGCCACGGAGCCAGAAGACCGTTCGACG
ATCCTACTTCTGATGTCATCCCCTTCTGTTCCCTCCCTGTTGAATATCCCAACTATTCTCTATCA
ATTCCGGGATGGATCATGAAAGATTTTGTCTTGAAATGCCGATAAGGAATAGCCAGTTATAGAAG
CGGGTGGCAGGGAATGAAAGCAAGCACTCCTGTGCTATCAAAGTG
Found at i:35991 original size:25 final size:25
Alignment explanation
Indices: 35951--36001 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 25
35941 ATCCGGAATG
35951 AATAAAAAAAGAAAAA-AGAAAGAAA
1 AATAAAAAAAGAAAAAGA-AAAGAAA
35976 AATAAAATAAAG-AAAAGAAAAGAAA
1 AATAAAA-AAAGAAAAAGAAAAGAAA
36001 A
1 A
36002 GAAACTGGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.82, C:0.00, G:0.12, T:0.06
Consensus pattern (25 bp):
AATAAAAAAAGAAAAAGAAAAGAAA
Left flanking sequence: Indices 35451 -- 35950
ATCACTTCAAGCAGTGGAAACAACAAAAGATGCGCTCCAAGTCCTTGGGCTGTTGAACAGAATCC
AACCACACCGGAATGGATGGTACAAAGTCCTCCAGCTTTTCATACTTTTGGAGAACTTCCAGCTA
TCAAGGAGACGAAAAGCTCTGTGAAGTAAAAGAAAAAAAGGTCGCCGATTGCTACTAAGAACCTA
ACAGAACTTTTCAAAATTGAAAACGGATCAGTCGACCTGGTCTACGAATCTATTCTAACTATCAA
CGAATTCTTCAAATTTTAGGTGGGATGGGGATTGTAATTATTTATACTTCTCGAGGTATAATGAC
AGACCGGGAGGCTAGATTCGAAGGAATCGGCGGATCAATTTTGTGTTATATATGGTATTCTGATA
TCCGAATTAGATCCTAAATTTACTATTTGTGAAAAAAAGAGAAAGGGCGGGTTGTATAATCTCAC
TCCTCCCCCATTAGTTGATACTTCAAGGAGGTTTTATCCGGAATG
Right flanking sequence: Indices 36002 -- 36501
GAAACTGGTTCACGTAAGAATGGACGTCTTGGTTCACGCAAGAGTGCACGTAGAAAAAGGACTTA
TTCATGTTCAAGCAAGCTTCAACAATACCATTGTGACTGTTACAGATGTAAGGGGTCGGGTGGTT
TATTGGGCCTCCGCCGGTACTTGTGGATTCCGGGGTACAAGAAGAGGGACACCGTTTGCTGCTCA
AACTGCAGCGGGAAATGCTATTCGTACAGTAGTGGAGCAAGGTATGCAACGAGCGGAAGTGATGA
AAAAGGGTCCTGGTCTCGGAATCCCATCTTCCAGGGTCAGGAGCCACGGAGCCAGAAGACCGTTC
GACGATCCTACTTCTGATGTCATCCCCTTCTGTTCCCTCCCTGTTGAATATCCCAACTATTCTCT
ATCAATTCCGGGATGGATCATGAAAGATTTTGTCTTGAAATGCCGATAAGGAATAGCCAGTTATA
GAAGCGGGTGGCAGGGAATGAAAGCAAGCACTCCTGTGCTATCAA
Found at i:36052 original size:24 final size:24
Alignment explanation
Indices: 36007--36052 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
35997 GAAAAGAAAC
* *
36007 TGGTTCACGTAAGAATGGACGTCT
1 TGGTTCACGCAAGAATGCACGTCT
*
36031 TGGTTCACGCAAGAGTGCACGT
1 TGGTTCACGCAAGAATGCACGT
36053 AGAAAAAGGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (24 bp):
TGGTTCACGCAAGAATGCACGTCT
Left flanking sequence: Indices 35507 -- 36006
ACAGAATCCAACCACACCGGAATGGATGGTACAAAGTCCTCCAGCTTTTCATACTTTTGGAGAAC
TTCCAGCTATCAAGGAGACGAAAAGCTCTGTGAAGTAAAAGAAAAAAAGGTCGCCGATTGCTACT
AAGAACCTAACAGAACTTTTCAAAATTGAAAACGGATCAGTCGACCTGGTCTACGAATCTATTCT
AACTATCAACGAATTCTTCAAATTTTAGGTGGGATGGGGATTGTAATTATTTATACTTCTCGAGG
TATAATGACAGACCGGGAGGCTAGATTCGAAGGAATCGGCGGATCAATTTTGTGTTATATATGGT
ATTCTGATATCCGAATTAGATCCTAAATTTACTATTTGTGAAAAAAAGAGAAAGGGCGGGTTGTA
TAATCTCACTCCTCCCCCATTAGTTGATACTTCAAGGAGGTTTTATCCGGAATGAATAAAAAAAG
AAAAAAGAAAGAAAAATAAAATAAAGAAAAGAAAAGAAAAGAAAC
Right flanking sequence: Indices 36053 -- 36552
AGAAAAAGGACTTATTCATGTTCAAGCAAGCTTCAACAATACCATTGTGACTGTTACAGATGTAA
GGGGTCGGGTGGTTTATTGGGCCTCCGCCGGTACTTGTGGATTCCGGGGTACAAGAAGAGGGACA
CCGTTTGCTGCTCAAACTGCAGCGGGAAATGCTATTCGTACAGTAGTGGAGCAAGGTATGCAACG
AGCGGAAGTGATGAAAAAGGGTCCTGGTCTCGGAATCCCATCTTCCAGGGTCAGGAGCCACGGAG
CCAGAAGACCGTTCGACGATCCTACTTCTGATGTCATCCCCTTCTGTTCCCTCCCTGTTGAATAT
CCCAACTATTCTCTATCAATTCCGGGATGGATCATGAAAGATTTTGTCTTGAAATGCCGATAAGG
AATAGCCAGTTATAGAAGCGGGTGGCAGGGAATGAAAGCAAGCACTCCTGTGCTATCAAAGTGGA
GAGATTAGTTAGAGCTAGGGGCAGGCCATCTATTCCTGCTTGACT
Found at i:48464 original size:18 final size:17
Alignment explanation
Indices: 48441--48474 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
48431 TTGATTTCGC
*
48441 CCATTGTTGTTGCGAGCT
1 CCATTGTAGTTG-GAGCT
48459 CCATTGTAGTTGGAGC
1 CCATTGTAGTTGGAGC
48475 GAGAGGAACG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.15, C:0.21, G:0.29, T:0.35
Consensus pattern (17 bp):
CCATTGTAGTTGGAGCT
Left flanking sequence: Indices 47941 -- 48440
GTATCCCGACAAGGTGAAAGCCATTCAGGAGATGCCGATCCCACGAACTAACTGAGAAAGAAGTT
CACGGATTACGAGAACAGATATTCAGCACTAGAACGGACGTGCTGCGCATTCGCTTGGGCTGCTC
TGGCAGTACATGCTTTATCACACAACTTGGCTCATCGCTCGCATGGGCGCACTGAAATACATATT
CGAGAAAGCCTCTCTCTCTGGGGGGATAGCAAGGTGGCAAATGCTCCTGGCGGAATACTACATTG
TTTTCAAGACTCTCAAAGCCATCAAAGGCCAAGCACTGCCAGTGTGTTCAGGGGTTAAAGGTATC
TTCCTGACCACTATCCAAAGGATTCAGGCCTCTAAGACAGTCCCATCATTCTTGAGAGTCTTTAT
TTGTAGCTAAAGGCAGAGGGTCCGTTACAGACAGGTGCGGAGAACTAGTTAAGGTGACTTGGGAA
TAAGGGCTTGGAAGAGCAATGCGTAGAATCAGTTGTTGATTTCGC
Right flanking sequence: Indices 48475 -- 48974
GAGAGGAACGATTATCAGAAGCAGCTGAAGTCTGAGACACAAAGGCTGATTGCTGCTCACTGTGT
TGTGCAGCTTGTATGCGATGAAGACGCGATTCTTGGTTAAGGACCTTAGTCCGCAGCTCCTCAAA
CGATGGAACAGTCTTAGAGTCGGAGATGGTTGTAACAAAAGCTTCATATTCAAAGGGCTTTGTAG
TGAAAACTACTTTGGGGACATAGAAGAGAGTTGATAGCAGCCAAGGCATCAACCATAGACTTCAG
TTCCCGTAAATAGGCATCCATAGGCTTGTTACCTTTCCTGTTATTCTGAATATCGAACTTCAATT
TCATTTCTTTAGCCGTGGACTGATAAAAAAATCTTTGCTCTAAAGCCATCCAAACATCCATATAT
GTTTTGTTTTCATATTCTATTGTAGACTTCCGTCAACATGTCCACTGAGAGTGTCGCGTTCAACC
AAGAGCGAACACTTTGATCCGTTCTCACCCAAGCACTATAAGCGG
Found at i:65041 original size:22 final size:22
Alignment explanation
Indices: 65016--65072 Score: 105
Period size: 22 Copynumber: 2.5 Consensus size: 22
65006 CTCCTAAGGT
65016 CGGTCGACGGTAGTCTCCCTCA
1 CGGTCGACGGTAGTCTCCCTCA
65038 CGGTCGACGGTAGTCTCCCTCA
1 CGGTCGACGGTAGTCTCCCTCA
65060 CGGTCGACAGGTA
1 CGGTCGAC-GGTA
65073 TCACTTCTCC
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 30 0.88
23 4 0.12
ACGTcount: A:0.16, C:0.33, G:0.30, T:0.21
Consensus pattern (22 bp):
CGGTCGACGGTAGTCTCCCTCA
Left flanking sequence: Indices 64516 -- 65015
AGGTTGGGAGATAGCTCTTAGCCTGTTGGTTGCTTGCCTGTGACTTGACTTCCTCGTACTCCTTC
TCCTAGAAAGCGACTTCTTTCATTCCTCGACAGCTAGGTCTTTGCCGACTCTTAGCTTTCCAGGC
GGGTTGGTGTTCAACCTTCATTCAATAGGGCTATCTATCCGAAAGGTCTTAATAAAAGAATCCCT
GTAATAGAAGTTCATTCCTTAAATACCTTCCTAATCAGTAATTTGATGGTCTTCCGTAAAGACTT
TCATGCGCACCTTCCTTCATAAGGACAGGTAACCAGGCGGGTGACTCACTCGTAGGTAGCACTAT
CCGATGCTTTGACTCCTTCTTTTAGTAGTTCCTTTGAAGCTAGTAACTAGAATATAGGACCCGGA
AGGCGGGCTCTTATTGCTAAAACCGGAGCTGTTGTAGAGTTGATAAATCTCATTTGAGGGGATGC
CTCTAGCAACAAGCCCCTCAGGGGCGGTAGTCTCCCTCCTAAGGT
Right flanking sequence: Indices 65073 -- 65572
TCACTTCTCCGACTAAAAGAGAGCTTCCAAGCAGGCTTTTCCAAAGAATTTATGTAGCTTTCCCA
CTCCCTCTGAACAAATCGAAGAACCTAATGGATCGAACTCATCCTTGACTGCTACGAAAGATTAT
TCTAGTCTAGTTTAAGAAGTTTTGCTGCAGTCGATTCTTCTATCATTGGATTTTCAGTCTTGGAA
GTAGTGAAGCGGTTGTCCGATTGATTGAGTAGTCCATGGCCAGTGAAGGTGCTTTCGGGTCTATA
CCCATAGCCCTCTCATCTAGGAGATCAAACTGATGACTCAAAGCCTATCGTATCAGTCTTGGAGT
CAGCGCCTAATTCATCTGTCGTCCTATAGCTTGGGACTGGGGTTCCGCTTGTAGTACCCTTGGCC
ATGCCTTCTAATCGGCTAATCCTTCTTGCTGGAGTTGTTGTACCAGCTCAAGAAGCAAGTGCTGA
TTTCTTCCTTTTGGTATTGAAGCGGCTCATTCTTTCTGGTTCACG
Found at i:68806 original size:15 final size:15
Alignment explanation
Indices: 68786--68817 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
68776 TTAGAATCCA
68786 ATTGATTTTATATAT
1 ATTGATTTTATATAT
68801 ATTGATTTTATATAT
1 ATTGATTTTATATAT
68816 AT
1 AT
68818 ATATAAAGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.59
Consensus pattern (15 bp):
ATTGATTTTATATAT
Left flanking sequence: Indices 68286 -- 68785
ACCGGAAATGCGATATCTAAAGTCAATCTCAGTGAATTCCGTACCAAGCAGTCCAACCAAAACCT
AACAGTATATCAGATCTATCCTATAAAGGTAGTCCAACACAAGTAATCGATACTACGCCTTCGAC
CTTTGAGAAGTTACTTTGTGAAATAGGATTGATCCCTTGTACAATTTCTTCATTTTAGATAGCTA
GAGCTAAGCCTGTCCTAAGAATGAGTCGGGTAGGACCTTTCAGTCAAGTGCCTTGCCTTCCTTGC
CTATTCATTTAGTCCAACAATTGAAATACCTATTCGCATTCCTTCCCAGTCCACTTCGAAAGTTA
CTTTGTTCAGTCGATAGATGCAATGCTGCGATGGATAAATCTCATATGCTCTCCAACTTGAAAGA
CCTTCTCTTCCCCCTCTTGGAAACAGGCTAGCGATGAGGAGAAAAGATGATGACAAACGAACTGA
AAACTGCGAATGCTTCTAATTCATTGAATCTTATTTTAGAATCCA
Right flanking sequence: Indices 68818 -- 69317
ATATAAAGCAGAGTGATGTCTTTATGACAATTCGTCAAGTCCGATCGAGAAACCTGCGCCCAAAG
TGCTTACGTAGCCGGTCACCGTTTGGCTAAGATCCTTGATGACTGATTCAAAAACCACTCTAGCT
TGATTTCAGTCTTGTGTTAAGTGTTCGCATAGCGACTCAGGTCCTAACAACTTGATGTCAGACTG
TTCAACATGAGGGACATCTAACTCCTCTAACACAGAGAACATAAAGACTAGGATTAGATGCTTAA
CATAACGACTCGTATGCTTTCACGAAAGAAGAAGGAGCTCGCAGACATTTAACAAAGGATTGTGT
TGGTGTTCCGCGCGCTATCTCAACTCCTAGTTCTAGTAGTACAAGCTCGAATCTGATCTATAAGA
ATAGCGGAAATAGAGCTCTTTGAAATTGAAAGCGGTATTCCCCCTTATATCCAAAATCAGTAGAA
TCATGGAATTCTCTCCGAGAGCTGCTGAACTAACGACTCTATTAG
Found at i:79723 original size:1 final size:1
Alignment explanation
Indices: 79713--79780 Score: 64
Period size: 1 Copynumber: 68.0 Consensus size: 1
79703 AAGAATAATG
* * * * * * * *
79713 AAAAACAAAAAAACAAAAAACAAAAAACAAAAACAAAAAAAAAAAAAAAGAAAAAAGAAAGAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
79778 AAA
1 AAA
79781 GAAATAAAGA
Statistics
Matches: 51, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 51 1.00
ACGTcount: A:0.88, C:0.07, G:0.04, T:0.00
Consensus pattern (1 bp):
A
Left flanking sequence: Indices 79213 -- 79712
TGAAGTCTACAACAAGTGGGAGAGGCAGGATTCGAACCTACGTAGAAAAACTTCAACAGATTTAC
AGTCTGTCGCTTTTAACCACTCGGCCACTCTCCCCTTCCCGGGGCGAGGCCCCCCTTCGTAGCTT
CTGGCGAAGCTGCGAGTTCATGAGCAAGTGAATGAACGAGCCATGTTCCTAAAAGGAGTGACCCT
CTTTCTTTTCTTCCCTTTCCCTATCCCTTCAAAGCCCGGTTGGGCGCTAGCGCTTGACTAATAGA
AAGTCAGGCTCTTCTGCTGAGCGAAGCTGCGAGCCTACCCTTCTCGAGCCTACAACAATAGCTTA
CGCTTACCAAGCCTAAAAATAGGGCTACAGCAAGCCAAGCAAAGCAAGCTTTCCCCCTTCGTTTG
TTGTGGGTCGCGCCTCACCGCAGGTACTGAATGAATGAAATGAGTGGAGATCTTCCTTCCCCCTT
GCTAATTACCAAGAACTTCGTTGCCACTAGTGGCGAAGAATAATG
Right flanking sequence: Indices 79781 -- 80280
GAAATAAAGAACTCGGAGCCTAAAGAGAAGTAAGTCTACAAGAAGCTGGCAGAGCTTTAGCCATT
GGACCACATCGATCTATCCTACCTAAACAGTAAGCCTTTTCTTATTCGTTCTTCGAATGAGGCTA
GTGGAGACTAATTCCTTCCGGCTAATGAAGAGACTACTCCAGTCTTCCCATTCATTCCCATCCTT
CTTCTCCCTAAGAATTGAACGAACCAAGTTCACCTATTCGAGAGTGAGGAAGAAAAACCAACAAG
AAACTTCCCACTTTTGATGTCCTGCGATTCTGCTAGTTTAGAAACTAAGGAGAAGGACAGGGGGC
GCTAGGTCAGAAAAGCGAGAACTCTAAATTCTCCCCAAGTAGGATTTGAACCTACGACCAGTCAG
TTAACAGCCGACCGCTCTACCACTGAGCTACTGAGGAACAACGGACTTAAGGAAGCCGACTCTCG
TTCTTTGGACCAACCTATGACCGGAGTTCGTCACCCTCACATACA
Found at i:79753 original size:28 final size:26
Alignment explanation
Indices: 79713--79791 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 26
79703 AAGAATAATG
79713 AAAAACAAAAAAACAAAAAACAA-AAAA
1 AAAAACAAAAAAA-AAAAAA-AAGAAAA
79740 CAAAAACAAAAAAAAAAAAAAAGAAAA
1 -AAAAACAAAAAAAAAAAAAAAGAAAA
* * *
79767 AAGAAAGAAAAAAAGAAATAAAGAA
1 AA-AAACAAAAAAAAAAAAAAAGAA
79792 CTCGGAGCCT
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
26 4 0.09
27 29 0.63
28 13 0.28
ACGTcount: A:0.86, C:0.06, G:0.06, T:0.01
Consensus pattern (26 bp):
AAAAACAAAAAAAAAAAAAAAGAAAA
Left flanking sequence: Indices 79213 -- 79712
TGAAGTCTACAACAAGTGGGAGAGGCAGGATTCGAACCTACGTAGAAAAACTTCAACAGATTTAC
AGTCTGTCGCTTTTAACCACTCGGCCACTCTCCCCTTCCCGGGGCGAGGCCCCCCTTCGTAGCTT
CTGGCGAAGCTGCGAGTTCATGAGCAAGTGAATGAACGAGCCATGTTCCTAAAAGGAGTGACCCT
CTTTCTTTTCTTCCCTTTCCCTATCCCTTCAAAGCCCGGTTGGGCGCTAGCGCTTGACTAATAGA
AAGTCAGGCTCTTCTGCTGAGCGAAGCTGCGAGCCTACCCTTCTCGAGCCTACAACAATAGCTTA
CGCTTACCAAGCCTAAAAATAGGGCTACAGCAAGCCAAGCAAAGCAAGCTTTCCCCCTTCGTTTG
TTGTGGGTCGCGCCTCACCGCAGGTACTGAATGAATGAAATGAGTGGAGATCTTCCTTCCCCCTT
GCTAATTACCAAGAACTTCGTTGCCACTAGTGGCGAAGAATAATG
Right flanking sequence: Indices 79792 -- 80291
CTCGGAGCCTAAAGAGAAGTAAGTCTACAAGAAGCTGGCAGAGCTTTAGCCATTGGACCACATCG
ATCTATCCTACCTAAACAGTAAGCCTTTTCTTATTCGTTCTTCGAATGAGGCTAGTGGAGACTAA
TTCCTTCCGGCTAATGAAGAGACTACTCCAGTCTTCCCATTCATTCCCATCCTTCTTCTCCCTAA
GAATTGAACGAACCAAGTTCACCTATTCGAGAGTGAGGAAGAAAAACCAACAAGAAACTTCCCAC
TTTTGATGTCCTGCGATTCTGCTAGTTTAGAAACTAAGGAGAAGGACAGGGGGCGCTAGGTCAGA
AAAGCGAGAACTCTAAATTCTCCCCAAGTAGGATTTGAACCTACGACCAGTCAGTTAACAGCCGA
CCGCTCTACCACTGAGCTACTGAGGAACAACGGACTTAAGGAAGCCGACTCTCGTTCTTTGGACC
AACCTATGACCGGAGTTCGTCACCCTCACATACACCGGGAAAAAG
Found at i:79759 original size:20 final size:19
Alignment explanation
Indices: 79713--79780 Score: 75
Period size: 20 Copynumber: 3.5 Consensus size: 19
79703 AAGAATAATG
*
79713 AAAAACAAAAAAACAAAAA
1 AAAAAAAAAAAAACAAAAA
*
79732 ACAAAAAACAAAAACAAAAA
1 A-AAAAAAAAAAAACAAAAA
79752 AAAAAAAAAAGAAA-AAAGAA
1 AAAAAAAAAA-AAACAAA-AA
*
79772 AGAAAAAAA
1 AAAAAAAAA
79781 GAAATAAAGA
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
19 12 0.29
20 30 0.71
ACGTcount: A:0.88, C:0.07, G:0.04, T:0.00
Consensus pattern (19 bp):
AAAAAAAAAAAAACAAAAA
Left flanking sequence: Indices 79213 -- 79712
TGAAGTCTACAACAAGTGGGAGAGGCAGGATTCGAACCTACGTAGAAAAACTTCAACAGATTTAC
AGTCTGTCGCTTTTAACCACTCGGCCACTCTCCCCTTCCCGGGGCGAGGCCCCCCTTCGTAGCTT
CTGGCGAAGCTGCGAGTTCATGAGCAAGTGAATGAACGAGCCATGTTCCTAAAAGGAGTGACCCT
CTTTCTTTTCTTCCCTTTCCCTATCCCTTCAAAGCCCGGTTGGGCGCTAGCGCTTGACTAATAGA
AAGTCAGGCTCTTCTGCTGAGCGAAGCTGCGAGCCTACCCTTCTCGAGCCTACAACAATAGCTTA
CGCTTACCAAGCCTAAAAATAGGGCTACAGCAAGCCAAGCAAAGCAAGCTTTCCCCCTTCGTTTG
TTGTGGGTCGCGCCTCACCGCAGGTACTGAATGAATGAAATGAGTGGAGATCTTCCTTCCCCCTT
GCTAATTACCAAGAACTTCGTTGCCACTAGTGGCGAAGAATAATG
Right flanking sequence: Indices 79781 -- 80280
GAAATAAAGAACTCGGAGCCTAAAGAGAAGTAAGTCTACAAGAAGCTGGCAGAGCTTTAGCCATT
GGACCACATCGATCTATCCTACCTAAACAGTAAGCCTTTTCTTATTCGTTCTTCGAATGAGGCTA
GTGGAGACTAATTCCTTCCGGCTAATGAAGAGACTACTCCAGTCTTCCCATTCATTCCCATCCTT
CTTCTCCCTAAGAATTGAACGAACCAAGTTCACCTATTCGAGAGTGAGGAAGAAAAACCAACAAG
AAACTTCCCACTTTTGATGTCCTGCGATTCTGCTAGTTTAGAAACTAAGGAGAAGGACAGGGGGC
GCTAGGTCAGAAAAGCGAGAACTCTAAATTCTCCCCAAGTAGGATTTGAACCTACGACCAGTCAG
TTAACAGCCGACCGCTCTACCACTGAGCTACTGAGGAACAACGGACTTAAGGAAGCCGACTCTCG
TTCTTTGGACCAACCTATGACCGGAGTTCGTCACCCTCACATACA
Found at i:79780 original size:14 final size:13
Alignment explanation
Indices: 79713--79780 Score: 75
Period size: 13 Copynumber: 5.0 Consensus size: 13
79703 AAGAATAATG
79713 AAAAACAAAAAAACA
1 AAAAAC-AAAAAA-A
*
79728 AAAAACAAAAAAC
1 AAAAACAAAAAAA
79741 AAAAACAAAAAAA
1 AAAAACAAAAAAA
79754 AAAAA-AAAGAAAA
1 AAAAACAAA-AAAA
*
79767 AAGAAAGAAAAAAA
1 AA-AAACAAAAAAA
79781 GAAATAAAGA
Statistics
Matches: 48, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
12 3 0.06
13 23 0.48
14 13 0.27
15 9 0.19
ACGTcount: A:0.88, C:0.07, G:0.04, T:0.00
Consensus pattern (13 bp):
AAAAACAAAAAAA
Left flanking sequence: Indices 79213 -- 79712
TGAAGTCTACAACAAGTGGGAGAGGCAGGATTCGAACCTACGTAGAAAAACTTCAACAGATTTAC
AGTCTGTCGCTTTTAACCACTCGGCCACTCTCCCCTTCCCGGGGCGAGGCCCCCCTTCGTAGCTT
CTGGCGAAGCTGCGAGTTCATGAGCAAGTGAATGAACGAGCCATGTTCCTAAAAGGAGTGACCCT
CTTTCTTTTCTTCCCTTTCCCTATCCCTTCAAAGCCCGGTTGGGCGCTAGCGCTTGACTAATAGA
AAGTCAGGCTCTTCTGCTGAGCGAAGCTGCGAGCCTACCCTTCTCGAGCCTACAACAATAGCTTA
CGCTTACCAAGCCTAAAAATAGGGCTACAGCAAGCCAAGCAAAGCAAGCTTTCCCCCTTCGTTTG
TTGTGGGTCGCGCCTCACCGCAGGTACTGAATGAATGAAATGAGTGGAGATCTTCCTTCCCCCTT
GCTAATTACCAAGAACTTCGTTGCCACTAGTGGCGAAGAATAATG
Right flanking sequence: Indices 79781 -- 80280
GAAATAAAGAACTCGGAGCCTAAAGAGAAGTAAGTCTACAAGAAGCTGGCAGAGCTTTAGCCATT
GGACCACATCGATCTATCCTACCTAAACAGTAAGCCTTTTCTTATTCGTTCTTCGAATGAGGCTA
GTGGAGACTAATTCCTTCCGGCTAATGAAGAGACTACTCCAGTCTTCCCATTCATTCCCATCCTT
CTTCTCCCTAAGAATTGAACGAACCAAGTTCACCTATTCGAGAGTGAGGAAGAAAAACCAACAAG
AAACTTCCCACTTTTGATGTCCTGCGATTCTGCTAGTTTAGAAACTAAGGAGAAGGACAGGGGGC
GCTAGGTCAGAAAAGCGAGAACTCTAAATTCTCCCCAAGTAGGATTTGAACCTACGACCAGTCAG
TTAACAGCCGACCGCTCTACCACTGAGCTACTGAGGAACAACGGACTTAAGGAAGCCGACTCTCG
TTCTTTGGACCAACCTATGACCGGAGTTCGTCACCCTCACATACA
Found at i:79789 original size:8 final size:8
Alignment explanation
Indices: 79713--79791 Score: 51
Period size: 8 Copynumber: 10.0 Consensus size: 8
79703 AAGAATAATG
*
79713 AAAAACAA
1 AAAAAGAA
*
79721 AAAAACAA
1 AAAAAGAA
79729 AAAACA-AA
1 AAAA-AGAA
79737 AAACAA-AA
1 AAA-AAGAA
79745 ACAAAA-AA
1 A-AAAAGAA
79753 AAAAA-AA
1 AAAAAGAA
79760 AAGAAA-AA
1 AA-AAAGAA
*
79768 AGAAAGAA
1 AAAAAGAA
79776 AAAAAGAA
1 AAAAAGAA
*
79784 ATAAAGAA
1 AAAAAGAA
79792 CTCGGAGCCT
Statistics
Matches: 63, Mismatches: 3, Indels: 10
0.83 0.04 0.13
Matches are distributed among these distances:
7 11 0.17
8 48 0.76
9 4 0.06
ACGTcount: A:0.86, C:0.06, G:0.06, T:0.01
Consensus pattern (8 bp):
AAAAAGAA
Left flanking sequence: Indices 79213 -- 79712
TGAAGTCTACAACAAGTGGGAGAGGCAGGATTCGAACCTACGTAGAAAAACTTCAACAGATTTAC
AGTCTGTCGCTTTTAACCACTCGGCCACTCTCCCCTTCCCGGGGCGAGGCCCCCCTTCGTAGCTT
CTGGCGAAGCTGCGAGTTCATGAGCAAGTGAATGAACGAGCCATGTTCCTAAAAGGAGTGACCCT
CTTTCTTTTCTTCCCTTTCCCTATCCCTTCAAAGCCCGGTTGGGCGCTAGCGCTTGACTAATAGA
AAGTCAGGCTCTTCTGCTGAGCGAAGCTGCGAGCCTACCCTTCTCGAGCCTACAACAATAGCTTA
CGCTTACCAAGCCTAAAAATAGGGCTACAGCAAGCCAAGCAAAGCAAGCTTTCCCCCTTCGTTTG
TTGTGGGTCGCGCCTCACCGCAGGTACTGAATGAATGAAATGAGTGGAGATCTTCCTTCCCCCTT
GCTAATTACCAAGAACTTCGTTGCCACTAGTGGCGAAGAATAATG
Right flanking sequence: Indices 79792 -- 80291
CTCGGAGCCTAAAGAGAAGTAAGTCTACAAGAAGCTGGCAGAGCTTTAGCCATTGGACCACATCG
ATCTATCCTACCTAAACAGTAAGCCTTTTCTTATTCGTTCTTCGAATGAGGCTAGTGGAGACTAA
TTCCTTCCGGCTAATGAAGAGACTACTCCAGTCTTCCCATTCATTCCCATCCTTCTTCTCCCTAA
GAATTGAACGAACCAAGTTCACCTATTCGAGAGTGAGGAAGAAAAACCAACAAGAAACTTCCCAC
TTTTGATGTCCTGCGATTCTGCTAGTTTAGAAACTAAGGAGAAGGACAGGGGGCGCTAGGTCAGA
AAAGCGAGAACTCTAAATTCTCCCCAAGTAGGATTTGAACCTACGACCAGTCAGTTAACAGCCGA
CCGCTCTACCACTGAGCTACTGAGGAACAACGGACTTAAGGAAGCCGACTCTCGTTCTTTGGACC
AACCTATGACCGGAGTTCGTCACCCTCACATACACCGGGAAAAAG
Found at i:84555 original size:7 final size:7
Alignment explanation
Indices: 84543--84578 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
84533 TCTTCTCTTT
84543 TTTTTTC
1 TTTTTTC
84550 TTTTTTC
1 TTTTTTC
84557 -TTTTTC
1 TTTTTTC
84563 -TTTTTC
1 TTTTTTC
84569 TTTTTTC
1 TTTTTTC
84576 TTT
1 TTT
84579 AATATAATAG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 12 0.43
7 16 0.57
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (7 bp):
TTTTTTC
Left flanking sequence: Indices 84043 -- 84542
TTTGTTTGATTCCGGCACTTGCGTTCTCATGCCCGGAACCCTCGCGACTGATTGGGAGAAAGAGC
GAAAGCGAGAAAGATGGATTGTTATCCATCGGAAATCGATAGGAATTCCACGGGGATTGCCTTCT
CTTCTAATATATATATATGTTTTTATTTCATTATTAACATCCAATCCCATGCTAATAAGAAAAAC
GAGCGATTGCTAGTCAGCTTTCATTTTCTTAAAAAAAATGGTAGGGACTGAGGCTCTGAAGGCTT
TACAACTTTCTTCAATTAGGGAATAGCGCAGATGGATCAATCACGCGGTTCTGCAGCGTCCTCCA
ACTCGCTGTCCGCTCCCCTTCACTTTCTTTGCTGGACGGGAAGATGCGAATCGGGAAGGCCTTCC
CACCACGCGAAGTTCAAACCTCGCCGGAGAGGAATTGAAAACCGGGAAAAAAGCCCTTCGCAATC
GAAGGTGAAAGCGGGAAAAAGACGACGAAAGCCTTTCTTCTCTTT
Right flanking sequence: Indices 84579 -- 85078
AATATAATAGGTCTTCTCCCTTCGATCCGCGAAGTAGGCAAGCAGGAATCTCTCCCCCTTTCTGT
TTATGGATAGAAAGAATATCTCCTTAGGAGAGTATTTTATGAGTTGACTGTAACCCGAAGGCTTC
TTTCAATCGATCTAGTAGGTAAGAAATAAGATCTTCGTATAGTTAATGAATTAAAGCGAAACCAC
TAAGTTAGATCTCGTCTGTGATCCCTGGGCTTGTTAATTGAGAGAGAAACCCCTACTATTGATCG
TGGCCTTCATTGAGTGCATTTTTGGCTCTTTGACATAGTAAGGCGGGAAGGCATGAGCAAGCCAC
TTACAAAGGCCTTTCACAGCTCAAATCCATGCATTAAGCCGCTAATCCCTTTTCTAGCAAAGTCC
CAGCAGGCTACCTCATCGGGAAATTCAATTCTTTCACCGAACCCAGGGGGGGCACGATGAATACA
TTGATTATCTGGGTCCGATCATCGCTAGAGGCCCGTCGACTATAA
Found at i:84557 original size:19 final size:19
Alignment explanation
Indices: 84530--84578 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
84520 CGACGAAAGC
*
84530 CTTTCTTCTCTTTT-TTTTT
1 CTTTTTTCT-TTTTCTTTTT
84549 CTTTTTTCTTTTTCTTTTT
1 CTTTTTTCTTTTTCTTTTT
84568 CTTTTTTCTTT
1 CTTTTTTCTTT
84579 AATATAATAG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
18 4 0.14
19 24 0.86
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (19 bp):
CTTTTTTCTTTTTCTTTTT
Left flanking sequence: Indices 84030 -- 84529
GACGTTCGGACCTTTTGTTTGATTCCGGCACTTGCGTTCTCATGCCCGGAACCCTCGCGACTGAT
TGGGAGAAAGAGCGAAAGCGAGAAAGATGGATTGTTATCCATCGGAAATCGATAGGAATTCCACG
GGGATTGCCTTCTCTTCTAATATATATATATGTTTTTATTTCATTATTAACATCCAATCCCATGC
TAATAAGAAAAACGAGCGATTGCTAGTCAGCTTTCATTTTCTTAAAAAAAATGGTAGGGACTGAG
GCTCTGAAGGCTTTACAACTTTCTTCAATTAGGGAATAGCGCAGATGGATCAATCACGCGGTTCT
GCAGCGTCCTCCAACTCGCTGTCCGCTCCCCTTCACTTTCTTTGCTGGACGGGAAGATGCGAATC
GGGAAGGCCTTCCCACCACGCGAAGTTCAAACCTCGCCGGAGAGGAATTGAAAACCGGGAAAAAA
GCCCTTCGCAATCGAAGGTGAAAGCGGGAAAAAGACGACGAAAGC
Right flanking sequence: Indices 84579 -- 85078
AATATAATAGGTCTTCTCCCTTCGATCCGCGAAGTAGGCAAGCAGGAATCTCTCCCCCTTTCTGT
TTATGGATAGAAAGAATATCTCCTTAGGAGAGTATTTTATGAGTTGACTGTAACCCGAAGGCTTC
TTTCAATCGATCTAGTAGGTAAGAAATAAGATCTTCGTATAGTTAATGAATTAAAGCGAAACCAC
TAAGTTAGATCTCGTCTGTGATCCCTGGGCTTGTTAATTGAGAGAGAAACCCCTACTATTGATCG
TGGCCTTCATTGAGTGCATTTTTGGCTCTTTGACATAGTAAGGCGGGAAGGCATGAGCAAGCCAC
TTACAAAGGCCTTTCACAGCTCAAATCCATGCATTAAGCCGCTAATCCCTTTTCTAGCAAAGTCC
CAGCAGGCTACCTCATCGGGAAATTCAATTCTTTCACCGAACCCAGGGGGGGCACGATGAATACA
TTGATTATCTGGGTCCGATCATCGCTAGAGGCCCGTCGACTATAA
Found at i:98622 original size:16 final size:16
Alignment explanation
Indices: 98601--98640 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
98591 AAGGTGGAAA
98601 CTTTCTGCGGGATCCT
1 CTTTCTGCGGGATCCT
*
98617 CTTTCTGCGGGATGCT
1 CTTTCTGCGGGATCCT
98633 CTTT-TGCG
1 CTTTCTGCG
98641 CTACGATGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 4 0.17
16 19 0.83
ACGTcount: A:0.05, C:0.28, G:0.28, T:0.40
Consensus pattern (16 bp):
CTTTCTGCGGGATCCT
Left flanking sequence: Indices 98101 -- 98600
GCCGGCCCGCTCTGAAGAATTCATGGGTCGGCGGGCAGGCGAGACAGAATGGGCGGGCACTACTA
ACCAAGACAAGCCCAGTTCCCGCCGATAGGCGCTGGTAGCTTGCTTCCAAGCCTTGCCTTATATG
ATAGTTGTGCCCATGGCCCGAAGGAGCCTTAAGCACTTGTACAATGCTTCAAGTCAAGGCTCCCT
CCCACTCGTTGCCCAGAGCCTTGACTTTCCATGTTTTTAGTCAAATGTGCGCTAGCGCGCTACAA
CTAGCACTTTTTTCTCTGATAGACTCGCTTCTTCAAGCTCCGCCCCTTATTGAAAAAGAAAATAA
ATAAAAAGCGCTAACGCGCCTTTACTTTTTTGAGGAGATATAAAAAGAAGCAACCTTACTAAGCA
AACGTAGGCTTGGGCTCGAAAGCAAGAAGCAACGGCTTTCGCGCTTGTTGGAGCTATTAAGCATC
TTAGACTATTGCATTCCATTTTTCAGCTGGACAGAAAGGTGGAAA
Right flanking sequence: Indices 98641 -- 99140
CTACGATGTACTTTTTTACTCTTTAAGTGCGCCACTCCTTCTTTTGTCCTGTATCTGTAGCTGCT
TTTCCCGCACTCTCTTTTATCCCGCCGAAGGTCCCCCTTACATAATAGGGGTTAAGTTAAGGGGG
GTGCACACCATGGTCAAATCTGCATGAAAAACCGGGGGGAATCTTGAGTCTTTATATTATGCTCC
CGCACCCCCTATCTCTTAAAGGCTCTGCGCTCCCGCATTCTGATTGATCCTGTGCAATGTTGTAA
TCCTGCTGTTCCTTTATCCCCCGCTCCGCAGCTGCTGGAGACTTAGATTTTGAGCCTTTTGCGGT
ACTGATTGATGTTATGGGGGATTACTTGGGTTGGCCGGGCTGTTTGTTTGCGAAGGCCGAAGGAC
TTAAAAATAAGTTTTTTGTGTTATTGGACAGAATCGGTGCCGTTTTCCCACGCCTCATTTTCCAT
AATATGATTATGAGCTGCAGAACGCTTGAAGCTGGAATTTTAGCA
Found at i:103425 original size:20 final size:20
Alignment explanation
Indices: 103400--103439 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
103390 CCAACTCAAT
103400 ATCTTAAAATAGAAGTCATC
1 ATCTTAAAATAGAAGTCATC
103420 ATCTTAAAATAGAAGTCATC
1 ATCTTAAAATAGAAGTCATC
103440 TTTCTTCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.15, G:0.10, T:0.30
Consensus pattern (20 bp):
ATCTTAAAATAGAAGTCATC
Left flanking sequence: Indices 102900 -- 103399
GAATATTCCTAACCGGAATCATGAATTGGATTCGAACCAATATCAAGCTACTTTCCTTCGTTGAA
CACAAGACAGACGGGGACAAATCCAATCCCTTAATTCTTTGATCCCAATTCAATTGTTGTTTGAT
GTAATAATAGAGGTGTCAGGCTCAGACTCTGAGAAAGATGACATGCGGCTAGTCCCAACTCTTAG
TCTCGTAGTCTTGAAACTCAGCCGTACTTCCTTTGGCTGGCCTTTCGATCCCCTCGTTCACAAAG
GGGCGCAACTGAAGCTCATCTAACGATGTGATAGTGGCTGTTCGCTCCTCTTTCTCTTCCTCTTT
TTCTGCTTCTGCTAGGATTTTGTCCTGATAGCGCCGTGCTTGTTCAAGAAAGAGAGAGTCCCTTT
GACGGAGAGAAAGACTCCGGGGATAGATAGTCAATGGCCTATGAGGAAGACATCTCCTCTGTTTT
TGCTCTTATTTTTGGCCTTTGGGCTTTTTGACTGTCCAACTCAAT
Right flanking sequence: Indices 103440 -- 103939
TTTCTTCAAAGGCCGTTGACTCTGCTTCCTTGATTGAATAATCGAAGGTGAATCAATCAGACAGG
ACGGACGTGTGATAACAACACTTGCTTTCGTGCTGGAATTCCCCTTGGCGTCACTCACCTCTCTT
TCCCTTGCTTTGCCCCCGTTTACCACAATGGCTGTCTCGCTGTCTACTGGAGCTCGGATCCGACT
CAAAGTTCGTGTGTATGCGCCCTGCCCAGAGCTAGCCTGAAAGAAAGTTCAATAAAAATGATTGA
CACTTGAAAGTAAGGTGAAGACTCTTTCCCCTAATCCATCCATGAATATACTTTTTTCGCTAAGA
AAGCCTCTACTGGGCGGGCTACTCCAATCATTACTTTTTTTCTGGGTTGTTTCATAACATAAAGT
CATCTAAACAACAGCTTTTAGCTTGCTTCTTGATTGTGGCGATCCCCTTCTTCTGTTCTTGACTC
GTACCTGAAGCTAAGCCGGACTCAAGGAGGCTTCAAAGCCAGATC
Found at i:110993 original size:25 final size:25
Alignment explanation
Indices: 110962--111025 Score: 128
Period size: 25 Copynumber: 2.6 Consensus size: 25
110952 ACTTTCATCG
110962 ATTTTATCATTAGTATAATCTATCT
1 ATTTTATCATTAGTATAATCTATCT
110987 ATTTTATCATTAGTATAATCTATCT
1 ATTTTATCATTAGTATAATCTATCT
111012 ATTTTATCATTAGT
1 ATTTTATCATTAGT
111026 CTATAGTTTG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.31, C:0.11, G:0.05, T:0.53
Consensus pattern (25 bp):
ATTTTATCATTAGTATAATCTATCT
Left flanking sequence: Indices 110462 -- 110961
TGTACTGATTTGATCACTATTCTCCAAGAGGTGCCGATTGAGGCGACCCTCAAGTTCGTCGTAAC
GCTGCCCGTCTTCTATAACCGGTTTGATCACCTCAAGACCTACAGGAGGGGCGCTTCGGTGCGCT
ACAGGATGGTCCCGCAGGTAATCCTCTTCTGCCACGTGAGGCTGGTGAGAAGGTCCGGGAAGCAT
CCAATGCGCCAGAGAGGGGCTTGCTTCCGTAGTGACGAGTGCTCGAAAAGCACAGCCAATCACGA
AGGCCAGAGCGGAGGAGCAGCCCATCTTGCTAAAAAGCAAAGAGAGGGCCTTCACCCCTATGAAG
CCCGCTACTTTTGAAAGTACATCAATAAAAAACGAGATTCCCCCTATCGAAAGACAGAGAAGATA
GAAAAGCATCAGAAGAGCGATGAATAAGAGAAACGGAATGAACGCCCTAGCACTGCGAAATCAAT
TCATTCTCACTGAAGATCCAACCCGTATCATTTGCACTTTCATCG
Right flanking sequence: Indices 111026 -- 111525
CTATAGTTTGCAGCTTATCAAGCTTTCAATCCGTTCTTAGACCTACCGGTGACCAGCTTCGCGAG
ACCTTTTCGATCTACACATGACTAAGCTCTATTGGGCGGTGGCTTATCGAAGCACTACTTGATAA
GATCAGTAATAAAAAGAAAGACCTGCCCTTTCGGTGAAGTTGCTTTCTTCTCTTATGATATTTCT
AGTTGGATTCAAAGAGCGCTCCTAAATGCCTTACACAATTCAAGAGTTAAGAAAGGCTCTTATTC
ATTCTTTTTATAATATAGGAAGAAGGAGATCTGACTTCTTAGAAGGAAATGAGCTACCTAGACCT
TTGTTTTTTATGTACAGGTCTCGTGAAGAGAGAAGATAGGAAGAGGAGTACGCGAAAGGAGACTG
TGAAGTAGCTAGGTGATAAGAAGACTAGCTCGGGCTTGAAAGCTTGAACGTATAGGCTGTTGGAT
CACAATAGGTGGAGTCTCTAAAAGCCTTATAGAAGCATGAGACTG
Found at i:112467 original size:17 final size:17
Alignment explanation
Indices: 112445--112478 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
112435 ATTTCCAGCC
112445 TTCGTCAAGATAGAAAG
1 TTCGTCAAGATAGAAAG
112462 TTCGTCAAGATAGAAAG
1 TTCGTCAAGATAGAAAG
112479 AAAGGATCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.12, G:0.24, T:0.24
Consensus pattern (17 bp):
TTCGTCAAGATAGAAAG
Left flanking sequence: Indices 111945 -- 112444
AAAACTCAACGACTTCCAGGCCTCCAAGATCTGCTGAAGGAGACGGGATGACAATAGAATGACTG
ATTTACGGCTTTACGATCTCAGAGCAGCGTAAGGCAATTATAGCTCTTTTTTCGCCTTCTCAATC
TCATCTCAAGTCAGGGCTCAGTTGCACTAAGATAGAAAGATTTGTCTTTTTTTCCTCTCTTTATC
CAGTCGGGCTTGTCTCAAGACTAAATCGAATCTAACTAACGTTCTTCATCAAGCTGTCAGTTTCC
TTCCTCGCCTACAGGATATGATGCAGATGTAATGGGACTCAAGCTGTAAAACACACTAAGTCTTC
TATGTCCGATAGATTGGTCACGAAGTCAAGATGAATATAGCTTCTTACGGATTCATTTATAAGCA
TAAAGGTTATCTGAATTGAAAAGAAAAAAGAATAGACTAGCTTCACCCATGTCCTTCATCTCAAA
GTTGGATGATTAGTGGCATTTATCAATTCCTTGTCATTTCCAGCC
Right flanking sequence: Indices 112479 -- 112978
AAAGGATCCCTCCTTACTACCATCCATTTCTCTAAGACTAAGATCGATAGACGAATGCGCCCCGT
GATGAAGAGAAACTTCTTAGTCCCAGAGTCTTGTAACTCGCTTTGTCTTGAAACTCAGCGCTGAA
AGCCCAGTCAGCTAAGGAAGCTCAGTCAGTTGATAGATGTAACACTAAGCCAATCTGGAAAGTTG
AGTAGAATCAAGAAACTGGCATACCTTGAATCTAGCCTACAATCCGATCTTTCTTCTCTTAGTAA
ATTGATAGTCGTCACTGAGCTATGCTTCTTTGTTGAGATCGCTTGCCAAAAAGCTATAGTCAACT
TCACTTTCACTTGCCTGACTTCTTTCGCTTCCCTCAAGGCTAGCAGAGGGGGCTAACCTTCGAGT
AAGCTATATATAAGAATAAGAAAGATGGATTATCTATGCTAAAGGGAAAAGGGCATTCCTCTTTA
CTCTCAACAGCTTCTCAAAGAGCTTCTGAGACTAGTGAAAGAATT
Found at i:138753 original size:21 final size:21
Alignment explanation
Indices: 138729--138772 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
138719 TCTTTGAGAG
138729 CATAAAGAGGGCCTTATAATT
1 CATAAAGAGGGCCTTATAATT
*
138750 CATAAAGAGGGTCTTATAATT
1 CATAAAGAGGGCCTTATAATT
138771 CA
1 CA
138773 AACTAGATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.39, C:0.14, G:0.18, T:0.30
Consensus pattern (21 bp):
CATAAAGAGGGCCTTATAATT
Left flanking sequence: Indices 138229 -- 138728
CCCAGGCCTTCAGATCGCACTTCCTGCTTAAAGAGGATCGGAAGAAGTTGAAGGTTGAGAAAGAA
GGATCAGATGTGTACGAACAGAATGAACCCCAGATAGAGAAAGCGGACCAAGGGGAGATTCCCCT
TTCGATTGGAGTTCTACGGTGGGAAAGAAAGTAAGGAGTTAGAGCTCGGAAGTGAGAACTAGCTA
GACCATATTGATTTTTAGATAGTCTCGACCTTAAAAGAGGGAGTCAAAACTGACTTATAGGGGTT
GCCAGTCATAGCTATAGGAAGAGGGAATCCAACTATCGCAATTCAATCATAGGGCTAAACTGTGC
TTGATTAGTACCGGCTTTCGTTGAACTGAACAAGCGAAATGAGAATGTCAGTCTAGTGCTAAAAA
GGGCGAATAGCAATCGGGCTAAATGCATGGCTTCGACTCCTAATTCTACCTTTAAAGGGCTTCGT
TTCGGCCTATGGAATCTCAGTTCTGTAAAAGCCGGTCTTTGAGAG
Right flanking sequence: Indices 138773 -- 139272
AACTAGATATCGGATGAAAGTGGTATGACAACCTCAAAACCCGGTCCCATGGGGAGAGTTTTCTA
TTTGAGTTTCGGAAAAGAAAGGAGAAAGGACTTTTGAAGCTTGCTGACTAGGGTTGGAAGCTAAA
TTCAGTCTTCGCCATAACATAAGAAAGTCGTGGAGTGCATAAGCCCCTTTAGAGATAGGGGGCGG
CTTTCTTGTGGTAGTCATTGCGAATGAGCAAGTAGGGGGCGGCAACTAAAGAGGTAGCGAGACTG
ACCGCAATTGCAGGAATAGGTTTACTTTCTTTCATTTTGGTTATGGAAAGTGAAAGTTCTTTCGT
TTAGTACGAGATCGCTTCACACCTCGCGGTGCTTACACCTCTCGCCTATCGAAGTTCTGTTCAAA
AACCTCGTCCGAGAACTTGTATAGAGAAGGATTTCCCGCGGCGCAGCAGTTCTTCCATACCAACT
TAGCTGCCCGGCGCTGCTATTGCTAACAACTGGTACACCATAGGT
Found at i:140403 original size:18 final size:18
Alignment explanation
Indices: 140382--140424 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
140372 CAACCTTGTT
140382 GACTATGACAACAG-TCGC
1 GACTATGA-AACAGATCGC
140400 GACTAT-AAACAGACTCGC
1 GACTATGAAACAGA-TCGC
140418 GACTATG
1 GACTATG
140425 GCAGGGCGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.35, C:0.26, G:0.21, T:0.19
Consensus pattern (18 bp):
GACTATGAAACAGATCGC
Left flanking sequence: Indices 139882 -- 140381
TACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGA
GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTAC
CTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATAACACTTCT
CCTTCCGACTTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGT
CCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATAGGA
GAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAG
CGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTCACCGGGAGGAT
CGCCCTCCCAATTCGAAGTTTTTTCCTGGAAGTTTCAACCTTGTT
Right flanking sequence: Indices 140425 -- 140924
GCAGGGCGGTACGCTCTGCTCTCTCGCGACCCCTACTCTAATCAAAAGACTAAAGGCCCGATTCA
AAGGGCGAGCACTGAAATGAGAAAGGCTTGTAGACTCGTGACGCTGAACGAGACATTCGAAAACT
AAAGCGCACACTAGAAAGTGCTTCGAAAGGTGTCAGCAGGTGCGCGGAGCCGGAGCCCGGCATGT
TCGCCCGCTGGGCCGAGTGTTCGCCCACTTCCGAGTCTTCGCCTTTAGATAACAAAAAGTGTCCG
CCCCTTAGGTCGCCAAACTACGACGAGAGTTTCGCCTTTTGAAGCGCCAGTCGCGTAGGGCGACC
GGGCCAGGCCGAGTCAGAAAGGCTTTGATGACTCAAGGTTCATATTAGGGAAAGGAGAGTGAGGG
GAAGAGGGGGCAGCCCTCGGCCCGATCATCCAATTCGCTCCAACAGACAGGCATGGTTCTGTAGT
CAAAGCAACTTCGTCACTTTCGTGTACCCATCGGACGGCAGCCCT
Found at i:167975 original size:27 final size:27
Alignment explanation
Indices: 167937--167988 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
167927 ACTTATCAAT
*
167937 AAACAATTCTATGTTCAATTTGACTAC
1 AAACAATTCTATGTTCAACTTGACTAC
*
167964 AAACAATTCTATGTTCCACTTGACT
1 AAACAATTCTATGTTCAACTTGACT
167989 CCTACCCATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.35, C:0.21, G:0.08, T:0.37
Consensus pattern (27 bp):
AAACAATTCTATGTTCAACTTGACTAC
Left flanking sequence: Indices 167437 -- 167936
AGCAGTAACGCTCATAGCAAGCAAGAAAGATGGGGTAAAGGGGCGAAACGGCGGGAAAGAAAAGT
TCAGTTTATAGAGTCGGAGAGCTAGTAGAGCTCATAGGTTTCTACCTGTGACTAACTTAGTGTGC
TTTTGGTAGCAGCAGCCATACCAACAATCTATCTTTCGTAAATAAGCACTCACATTACGGTGCGA
GATCTGCCAAGCTAAGCTCAATCACAACCCACCGGCGAGTGAGGGCTAAACGGTATTTATAGATT
GAAACTAGAAAACCTTCATTCCTGAACTAGCCTCATGAACAAGCCAGTCTCAACTTTCCTGTTCA
ACTTTCTAGTGCGTCTATCTAAGGATAGATCTCGGTATCTGTGGAGAGGAAAAGAATGAATCCTA
CTAATGCGTCAAAATCTAAAAAAATTGATTTGTATTCCCCTTTCTTTACAGGTCTCGTGTTCCCC
CTATTGAACGAAATGCAAAAACCACATACCCACAAACTTATCAAT
Right flanking sequence: Indices 167989 -- 168488
CCTACCCATACCGTGTTCAATTGTACAACTACCAATTCAATCTTGAGATTTAGTAAGAATAGCAG
ACGGTATACTAGTCAGGACTCTTCTTTTCTACGAACAAGTCAGTACTCGCACTATTGGGAGAACA
TGCGTCAAAGAAGGTCGTTTTCTTTTCCGTCCTCGCACTATTGTACGAATTTCTCCCTGTACCTA
AAAAGTCTTTATTTCACGCTGGAGCATTTGTAAGCGACGGGATCTTAGCAGCTTCTTCCCGAGTT
GCATTAGCTAAAGTGGATCTACGATCACGGGAACTAATCAATCGGTCTGTTCTGCCCCATAAGCA
TCTGGATGGTCTACGATCAGTGCTATTCGTACACCCTATGCCTGATTTCGCAACTTCAACCCTTT
CCCTATCCAATGTAGCTGTAACTGCGCCTTATTGGCTTCTTTTCAGTTAACAAGCAAGTACGCAA
ACAGCCTTCGGTTCCTAACAAGCTAAGCACCTACCCGGGGAACTA
Found at i:202816 original size:20 final size:20
Alignment explanation
Indices: 202788--202834 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
202778 TGAGAAGTAT
* *
202788 ATCCGTAGCTCTGTACAGCA
1 ATCCTTAGCTCAGTACAGCA
202808 ATCCTTAGCTCAGTACAGCA
1 ATCCTTAGCTCAGTACAGCA
202828 ATCCTTA
1 ATCCTTA
202835 CTTGCTTCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.28
Consensus pattern (20 bp):
ATCCTTAGCTCAGTACAGCA
Left flanking sequence: Indices 202288 -- 202787
ATCAGGCCGAAAGGCGTAGTCGATGGACAACAGGTGAATATTCCTGTACTACCCCTTGTTGGTCC
CGAGGGACGGAGGAGGCTAGGTTAGCCGAAAGATGGTTATCGGTTCAAGGACGTAAGGTGACCCT
GCTTTTTCAGGGTAAGAAGGGGTAGAGAAAATGCCTCGAGCCAATGTTCGAGTACCAGGCGCTAC
GGCGCTGAAGTAACCCATGCCATACTCCCAGGAAAAGCTCGAACGGCCTTCAACAAAGGGAACCT
GTACCCGAAAGCGACACAGGGTTGTAAACCGTACTTGAGGTAGACACCCTTTGCCCCATATGGGT
GATGAGAGTTCTAACAAGCCTTTGCAGAGACAGGGTAAGAAATCCTTAGTCAAGCCCTTCACTAG
CCTCTGGCTTTCCAACTATCTTACCTATTCTAGCCTTTTTTCGTAGAAGTTTATCCACCAAAGGT
ACGTTGTCACTAGAGCGAAGCAATAGGTAAAGTGCTGAGAAGTAT
Right flanking sequence: Indices 202835 -- 203334
CTTGCTTCTTTGCCGTCGAAGTGTCCCGCTATTACACAGGAGATCTCGAGTAAAGGTAGGCCCGG
TGCTCCTTCCCTTGCCAGTCCTAGCGGGGTTATCAGGTACTCTGAACCCTCAACCTTTCTCCCAA
GCATCTTGGTTTCCCTCAAAGTACAGCTAAATAACTAAAGCCTCTTTCGCTTTTTTTACTCTTCC
TTGCTGAAGTGAGTCTATTTTATTCCGTATCCCATAGATTGTCCCGCAATCTCTTCCAAGCCGAT
GTGAGATCACTTTACCCTCCGGAACCAATGCTAAATGTCCAGGGAGTCTCTCCCATGACCGGTGA
GCTATCCAACCCACGCAGAACCAGCACCTCATTGCTTTCGGGTCTTTAGAGCAGATTCCTGAAGA
ATAACAAGCAAGAATATGGTACAGGTGAAAGCGCGGAGTGGATCGTTCCACTTTGTAACCCAAGT
TGTGGGATCGTTTCTCTATGGCAACGGACAGCTTCGAATGGACCT
Found at i:203659 original size:24 final size:24
Alignment explanation
Indices: 203632--203679 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
203622 GATGGCTATG
203632 CGCTACACCTTGGTAAGACTATAA
1 CGCTACACCTTGGTAAGACTATAA
203656 CGCTACACCTTGGTAAGACTATAA
1 CGCTACACCTTGGTAAGACTATAA
203680 GCGGAAACTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (24 bp):
CGCTACACCTTGGTAAGACTATAA
Left flanking sequence: Indices 203132 -- 203631
TCCAGGGAGTCTCTCCCATGACCGGTGAGCTATCCAACCCACGCAGAACCAGCACCTCATTGCTT
TCGGGTCTTTAGAGCAGATTCCTGAAGAATAACAAGCAAGAATATGGTACAGGTGAAAGCGCGGA
GTGGATCGTTCCACTTTGTAACCCAAGTTGTGGGATCGTTTCTCTATGGCAACGGACAGCTTCGA
ATGGACCTGGAAAGATCAGCTCTTCTTCAAGGTGTGAGGGAGCAAAACAAAAGAGAATAATTCAA
GGGAATGAGTCAGCATCTAGTAACTGCTAGGATAGCTAGCAAAAAACAATTGAGGATGGGTAGTA
ACCAGAGCATGAGTAAACACGGTCTAGCAGGCTTGCTAACATCTTGTTTCCATCCTCTTATCTTC
CGGTGTCTAGTTCCATTGGATTCTTGGTTGATAGGGTTTTCATAGGAGGGGGATAGGTTGCATTC
CTATACAACAGCTTAACAGCCTTCGCATACAAGTAGATGGCTATG
Right flanking sequence: Indices 203680 -- 204179
GCGGAAACTAATAAGATTCGTTTTCATCAACCTATTCTATTATTCACGGTAAGTCTTCGAACAAC
AACCATCTCAGCGGTGACACACGAATTAGGTAAAGAGCTTTGAAAAGCGATTACTTAATTCCTCT
TCCCTGCTAGTATCCCAGCCCACCTATTAAGGTTAAATTGGAACGGAACTGAAAGAAAGACAGCT
GGTGAATATAGGTCTACTTTTTTTCAGCTGGCAACCCCTGCTTTCAAAAGGAATGCGCTGTGAGG
GAGAAGACAGCAAGCTACTGACATTGTGAATGTCCGAGGAGTTAATAAGTGCCTCACTTTACAGT
AAAGGAAAGGTATAAAGTTTTCCATTGTCCTAGGGATTCGTATTTCCCATTGTCCTTATGGATGA
GGGAATCGAGTTGCGAAAGATGAGGGAATCTACTTGAGTCCCCCTAAAAGCAGGGTATTATTCCT
ATTTTCCCTCTTCCTCCAGCTATCAACAGGATAGAGTGGAGCCTC
Found at i:216189 original size:15 final size:15
Alignment explanation
Indices: 216169--216198 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
216159 GGCAGCTGCA
216169 CTTTCTTTTTATTTT
1 CTTTCTTTTTATTTT
*
216184 CTTTCTTTTTCTTTT
1 CTTTCTTTTTATTTT
216199 TGTTTTTTGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.80
Consensus pattern (15 bp):
CTTTCTTTTTATTTT
Left flanking sequence: Indices 215669 -- 216168
GGGAAAGTCAGTAAGATGTCGGAGAAGCAAAATATACGAGATCGCAAACGTAGATTGCTCGCGGC
TAAGTATGAATTGAGAAAGCTTTCTCAATTTGTAAAGATACCGATCGATCTAGTGATATGCGGGA
CAAACATCGAAAGTCTCAGGTGACTGAAGAACTCAGCGACGAGTTGACAAAAGAAGCCCTAAAAA
TGGACATGAACGATGTTTTGATGGGCATAAAGAAATCGTCTTGGTAGCATCAAACCAATAGAACA
AGGGTTAGCTCTGCAGCTGGTCTACAAGCAAGGTAAGTAGGTCCATGCGAGCGGCCCGGATGTAC
CTTTTAGCCGCGAGGGGAACCGGGTAAACAAAGTCGCGATCAGAATGAATGGTAGTTTGCTGGGC
CTGTTGCTCCCGGAGGCGCTGGTTCGAATCCAGTTCGTGACAACCACAAAGCCTTTGATCATAGA
ATATCTCGGGACCCCGCTGGTAAATACGGGGCTCTGGCAGCTGCA
Right flanking sequence: Indices 216199 -- 216698
TGTTTTTTGTTTTTTGTTTTTTTATGATGCATCGAATGCTTCCTCTGCTTTCAGTAAAAATCCCA
TGATCGAGGCACTCTTTCTCTTATAGCGCTCTTTCCTTCCCTTCGAGCTAGCCGGAATAAATCCA
TTTCTTTTGTCTGTAAGAGAAAAGGCGCTTATTCCATGAAATAGGAGCGCAGCGGAGTCATGAAT
AAACAAGAATAGCCACTTCCTTATCTACGCTATTTACTTTCCTCCCCTCGTGGGAAGTAGCAAGA
GCCTTTATCTAATCTACTATTGAACCATCTCACCTGAAAGTCAGTCGCTACCTTAAGGCATGCCT
TGACTCCAAGAGCTAACTCGATGGGACTTGCTTTCCTAAAGAGAAGACGAAGAGGATGACACTGG
GGATCGTTCTTACTTAAAGAAATTCCCATGAGCTGCCTTGAGCTGGTAACTCCAAAATCGATGAT
TCTTGGCCACTGACTTACTGCTTTCACTCAAATGCCACTGATGCG
Found at i:216211 original size:6 final size:7
Alignment explanation
Indices: 216195--216220 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
216185 TTTCTTTTTC
216195 TTTTTGT
1 TTTTTGT
216202 TTTTTGT
1 TTTTTGT
216209 TTTTTGT
1 TTTTTGT
216216 TTTTT
1 TTTTT
216221 TATGATGCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (7 bp):
TTTTTGT
Left flanking sequence: Indices 215695 -- 216194
GCAAAATATACGAGATCGCAAACGTAGATTGCTCGCGGCTAAGTATGAATTGAGAAAGCTTTCTC
AATTTGTAAAGATACCGATCGATCTAGTGATATGCGGGACAAACATCGAAAGTCTCAGGTGACTG
AAGAACTCAGCGACGAGTTGACAAAAGAAGCCCTAAAAATGGACATGAACGATGTTTTGATGGGC
ATAAAGAAATCGTCTTGGTAGCATCAAACCAATAGAACAAGGGTTAGCTCTGCAGCTGGTCTACA
AGCAAGGTAAGTAGGTCCATGCGAGCGGCCCGGATGTACCTTTTAGCCGCGAGGGGAACCGGGTA
AACAAAGTCGCGATCAGAATGAATGGTAGTTTGCTGGGCCTGTTGCTCCCGGAGGCGCTGGTTCG
AATCCAGTTCGTGACAACCACAAAGCCTTTGATCATAGAATATCTCGGGACCCCGCTGGTAAATA
CGGGGCTCTGGCAGCTGCACTTTCTTTTTATTTTCTTTCTTTTTC
Right flanking sequence: Indices 216221 -- 216720
TATGATGCATCGAATGCTTCCTCTGCTTTCAGTAAAAATCCCATGATCGAGGCACTCTTTCTCTT
ATAGCGCTCTTTCCTTCCCTTCGAGCTAGCCGGAATAAATCCATTTCTTTTGTCTGTAAGAGAAA
AGGCGCTTATTCCATGAAATAGGAGCGCAGCGGAGTCATGAATAAACAAGAATAGCCACTTCCTT
ATCTACGCTATTTACTTTCCTCCCCTCGTGGGAAGTAGCAAGAGCCTTTATCTAATCTACTATTG
AACCATCTCACCTGAAAGTCAGTCGCTACCTTAAGGCATGCCTTGACTCCAAGAGCTAACTCGAT
GGGACTTGCTTTCCTAAAGAGAAGACGAAGAGGATGACACTGGGGATCGTTCTTACTTAAAGAAA
TTCCCATGAGCTGCCTTGAGCTGGTAACTCCAAAATCGATGATTCTTGGCCACTGACTTACTGCT
TTCACTCAAATGCCACTGATGCGTAAGACATTGAGTTGGACTACT
Found at i:222423 original size:21 final size:21
Alignment explanation
Indices: 222399--222445 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
222389 GGACGCTGTT
222399 GAAGAGGCAGCGGAAGCCGCC
1 GAAGAGGCAGCGGAAGCCGCC
*
222420 GAAGAGGCAGCGGAATCCGCC
1 GAAGAGGCAGCGGAAGCCGCC
222441 GAAGA
1 GAAGA
222446 AGGGAAGGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.32, C:0.26, G:0.40, T:0.02
Consensus pattern (21 bp):
GAAGAGGCAGCGGAAGCCGCC
Left flanking sequence: Indices 221899 -- 222398
CGAGTAGTGAAGAACTAAACGATTTTGTTTTGTTGGTTGTTGACCAACGGAAAGAAAGGGATTGT
GTCAACTTTGTTCCTTCATCTTTCTATTTTGATTCTCTTTTTCTTTTTTATATTGTGTAAGGCAA
AGCGCATTCCTTTAAGAATGTATCTGGTTCCATTTTTCTTTCGTTAGTTCAGCAGCTACTAAACT
ACGACGCTACCTTGCTGAACTCATCCAGCAAATACAGTAGCTCCTGGAATCTCAAACTATCAATG
CTATTTATCAGAATATCGTAGTAGGTTTCCCTAAGAAAGCCGGGCTTAAAATGAATAATGTTATT
CCCATATAATAACCGAACCGCTTCATCCCCAAAGGTTCTCTGAATAGCTTCAGGCATGGTCAAGC
CCGGTGGTAATACCATCCCGGCTTCACGCAAAAGCCTGCCGCACTCATTACCTATTTCTTGGTAT
AATTGGAAAAAGTCAAGTGGAGCGCTTCGCGCGTCGGACGCTGTT
Right flanking sequence: Indices 222446 -- 222945
AGGGAAGGAATCCCAATCCGTCTCCATGAGAGCGTCCATCTCACTCCTTCGTAGTACGAGTTGTC
TACTGGTAATCATTTGATCTGTTTTCATTTTCTGTGTAAAAATTAGGAATTCCTCTTCCAACTCG
TCCCAGAATGGGCGTTATGGCAAAGAACAAGAAGAAAACAAAAGGAGAGATTTGTCCAATAGTCA
CAAATGGTGCCTCCACAGGTTGACATCCGATCCAACCTAGTAGTAAGCGATCCGCCAAAAGCAAC
CAAAATATTCCTTGGTGAATCGGGCGAAAACTTGAACTACGTACATACATACTTTTAAAAAAAGG
TAAAGCCAACAGACATATAAAAACTGGTGCTATTGCGGCTACACCTCCCGCTTTGTCAGGTATAC
TACGAAGAATGGCATGGATCGGTAGGAAATACCATTCCGGTACAATATGAGGCGGGGTGGGCATC
GGATTAGCAGGTATATAATTGTCGGGATGCCCCAAAACATTAGGA
Found at i:225013 original size:45 final size:45
Alignment explanation
Indices: 224945--225070 Score: 189
Period size: 45 Copynumber: 2.8 Consensus size: 45
224935 GGAGAAAAGG
* * * * ***
224945 AGGTGCATACGATCTCGTGCAATCATACGATCTTCCCTTTTTTTA
1 AGGTGCATACGCTCTTGTTCAATCAGACGAGAATCCCTTTTTTTA
224990 AGGTGCATACGCTCTTGTTCAATCAGACGAGAATCCCTTTTTTTA
1 AGGTGCATACGCTCTTGTTCAATCAGACGAGAATCCCTTTTTTTA
225035 AGGTGCATACGCTCTTGTTCAATCAGACGAGAATCC
1 AGGTGCATACGCTCTTGTTCAATCAGACGAGAATCC
225071 TATAAAGAAG
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 74 1.00
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.33
Consensus pattern (45 bp):
AGGTGCATACGCTCTTGTTCAATCAGACGAGAATCCCTTTTTTTA
Left flanking sequence: Indices 224445 -- 224944
CAGAGCATTGATTGCACTACGTACACTAATTCACAAACCTCGTGTGGGGCTAATCGTTTTCATTT
CCCATCTAAGAGAACTCAGAAGAGAAAGAAAGGTTCGTGTAACACAACTGGGAGTTCTATTACTT
AAGATGGTGTCCAGCTCCAGACTATATTTAGTCAGTTGCTTTCGCATCCTTACTCGGTGTAATCA
AGGCCTATTCGAAAGCTGCCTATGCGGTGGGTTTGAATCCCACAGGAGTGAAATAGCTTGGTTTC
TCACATAGACTTTAGTGAGTAGTGAGCTGCTTGAGATAGGGCGATGCCGTTTGCTTGCTAATGAG
TTCGGTAGCAGCCTACTTTCTATAAGGAAGTGAAAACAGGCTTGTGAAAGGAAGCTACCTACCTT
CGAACCGAGATTTCTTCTCTATACAATAAAAACTAGTACATGAAAATTGATAGGGAAAGTACACG
GGGCACTCACTTACTTATCTATTGCCCGGAATAAAGGAGAAAAGG
Right flanking sequence: Indices 225071 -- 225570
TATAAAGAAGCCAATTTGACGCATATTTCACTTGCTCTAATGAGCCGGCTAAAACTCTGTTTCCG
TTACAGGTTCTATTATTTTCTAACTCCTTGGTGTCTCGTACCTTGACTTTCGCTACCTATACCTA
GGCTTTTCTGCCTTTGTCTTTACGACCTTGGCTCTTTCCGTTCTCTGAGGTTCTTTCTATCTCGT
AAGAGGTAAGGCTTTCCCGTCTTTACTCCCTGGGAAGCTAGACTTTCTTCTCTACTCATTTTGGA
GAGCTAATCTGACTTCTATCTCTTCTCAGTTCTCTAGGGAAGGTAGGGATTACTTGAGCTTACCC
ATCACTTCATCATTCTATTTCCAGGGGATTCCTAAAGAGTAGAAGGAGTGCTTACTGATAGGCTA
ACTTCACTCCTTTCACATTTAAAGTAGCTGCGGGCACCCGACTTTCTGCTTTCTCACAAGATCTA
AGTCACTAGTAGTATAGCCGGTCCTCTAAGCAAAGGTTACCTAAA
Found at i:225811 original size:31 final size:31
Alignment explanation
Indices: 225776--225855 Score: 79
Period size: 31 Copynumber: 2.6 Consensus size: 31
225766 TAGATAAGAA
*
225776 AAGGATGCGAAAGCTACTGACTATAGAGAGT
1 AAGGATGCGAAAGCTACTGACTATAGAGAGG
*** ** * *
225807 AAGGATGCTTTAGCTACTTCCTATATATAGG
1 AAGGATGCGAAAGCTACTGACTATAGAGAGG
*
225838 AAGGATGTGAAAGCTACT
1 AAGGATGCGAAAGCTACT
225856 AACTTATATT
Statistics
Matches: 37, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (31 bp):
AAGGATGCGAAAGCTACTGACTATAGAGAGG
Left flanking sequence: Indices 225276 -- 225775
GCTTTCCCGTCTTTACTCCCTGGGAAGCTAGACTTTCTTCTCTACTCATTTTGGAGAGCTAATCT
GACTTCTATCTCTTCTCAGTTCTCTAGGGAAGGTAGGGATTACTTGAGCTTACCCATCACTTCAT
CATTCTATTTCCAGGGGATTCCTAAAGAGTAGAAGGAGTGCTTACTGATAGGCTAACTTCACTCC
TTTCACATTTAAAGTAGCTGCGGGCACCCGACTTTCTGCTTTCTCACAAGATCTAAGTCACTAGT
AGTATAGCCGGTCCTCTAAGCAAAGGTTACCTAAATAGCTTCTTCTAACCACTCCCTAGTTCTCT
TTCATCGATTGATATGGGAATAGCAAGCAACCCCTCCACTTCTATTTATTATAGGGAATCAGACT
CTATAGCGCCACTTCTTTTTCTTTTCACTTCTTTTCTATTATGCCTTTTCTCAACTTTAGTGTGA
AACCTGCCTAAGGAAAGAAACTTGAGGTAAGAACATAGATAAGAA
Right flanking sequence: Indices 225856 -- 226355
AACTTATATTAGAGTTTGCTTCCTTTAGCTGACTTATCAGAGATCGAGAGAATTGCCATAAAGTG
AAGACAGAAACCACGCAAAGGTGTACTAGTATCAAAAGTGAGTAGACAAGAAGGCTGTCATTGGG
GGGACCCTGCTTTGAGACTCTATTACCTATAAGATATCAGTAAGACGTGATATGAGGAAGTTAAT
GGAAAAGTAAAGCATAGTCCTTAGGTACAAGATCAGAGGAGTCAAAGAGGAGATGCCCTACCGGG
GAGGTGGCGGGCTATCATTAGAATATAGAAAGCAAGCAAATGGGGGAATTCTCCACCTTGGCTGG
TACCAGACCTTTTTTTGCCGCACCTTTGCCTCACAGGTCGATCTCCCATATGGTAGGCGTTGGCC
CCTCTGGCACTTTCGACGAAAGAAGTTCTCCACCCCTTTTCTGGTGCTTCGTGCCTGCTATGATT
GCTTGTCTCTTCGATTGCCGGACCTATCTCCGATCATGTATTTGA
Found at i:227409 original size:12 final size:12
Alignment explanation
Indices: 227392--227421 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
227382 CGGGCAGGCA
227392 TTTTTTCTTTCT
1 TTTTTTCTTTCT
*
227404 TTTTTTTTTTCT
1 TTTTTTCTTTCT
227416 TTTTTT
1 TTTTTT
227422 ACTTGGTTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (12 bp):
TTTTTTCTTTCT
Left flanking sequence: Indices 226892 -- 227391
TTGGCATAACTCCCAATCCGCTTTTTCTCATCTTGAACCTCCACTCTAGACTAAGGAGAAAGAGA
GGCATCAGATTGCTTCTTCCTTCTTGAGGGGCAGTCTAATAGGGAAGCCCCGCTTTTAGGGAAAT
GCTCTTGGTCTGCTTTCGATGTGGTCAATTCCGTCCTAGCTGTCCGGTCTGCTTGTCTGAAAAGG
ATTCAATTCCTAAAAAGTGGTCCAATCGTGGAAGGTACTTCGAATCGAATAAAGGTGTGAGCGAG
CGAGCTTATGTGCCGCCATTGACATATGGTCTGGCCATTTCCTTAACAGAATTTCAATCGTAGGT
CCCCTCGTCCGGCTATCCCCTGTGTCTAAGTCGAGTATTCGATTCCCTCTAGGCTATTCCTACGT
AAAAAATGACCTCTCGTGGTCCGCCGGCTGTGCTTTTCATTCTGTTTTATCTTCGAGCGAGGGCC
TCTGCTTTCATGGAGAATGCCCAACTGCTTTTCCGCGGGCAGGCA
Right flanking sequence: Indices 227422 -- 227921
ACTTGGTTCCAGCCTCGGTGGTCCTACAAGGGTTTACTTTACCATACCATTTAGCATCCTTTTTC
TTCGAACCTTTTTCCTATCTCTGAAGTGTATCCGCTGCTCCCCGCCGGTATAGGTCTAAGGGCGT
TTTGTCCCCTATCTCTCAATAGCACGGAACAAGATATATGTTGTGGCGGTTTCGCCGCCTATTCT
AAGGTAAATGGAGTCAGAGGAGAGGTAGGTAGTATGCCTTTCCCCATTCTGCTAGGGTGGCTTTT
CTTAACTGGGCTAGTGTCCCCTTCTGTTTAAGGTGCATTTTCTTTTCGACTGGTCCTATAAGTAG
TTGTGTGAGGGGGTGCGCGCCTCTTTTTCTTCTTCCGGCTTGAGTTCTTAATGCCTGAAGGGAAA
GACTCTTCGACCACATTAACGGCTTGAGCAAGAGCATTGGTGCTTACACGATGAAAGTAATTTGG
CCAAGCTAGAGGATTTTCCATCGATCGTGACTCAAGAACGTAAGG
Found at i:227413 original size:16 final size:15
Alignment explanation
Indices: 227392--227421 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
227382 CGGGCAGGCA
227392 TTTTTTCTTTCTTTTT
1 TTTTTTCTTT-TTTTT
227408 TTTTTTCTTTTTTT
1 TTTTTTCTTTTTTT
227422 ACTTGGTTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (15 bp):
TTTTTTCTTTTTTTT
Left flanking sequence: Indices 226892 -- 227391
TTGGCATAACTCCCAATCCGCTTTTTCTCATCTTGAACCTCCACTCTAGACTAAGGAGAAAGAGA
GGCATCAGATTGCTTCTTCCTTCTTGAGGGGCAGTCTAATAGGGAAGCCCCGCTTTTAGGGAAAT
GCTCTTGGTCTGCTTTCGATGTGGTCAATTCCGTCCTAGCTGTCCGGTCTGCTTGTCTGAAAAGG
ATTCAATTCCTAAAAAGTGGTCCAATCGTGGAAGGTACTTCGAATCGAATAAAGGTGTGAGCGAG
CGAGCTTATGTGCCGCCATTGACATATGGTCTGGCCATTTCCTTAACAGAATTTCAATCGTAGGT
CCCCTCGTCCGGCTATCCCCTGTGTCTAAGTCGAGTATTCGATTCCCTCTAGGCTATTCCTACGT
AAAAAATGACCTCTCGTGGTCCGCCGGCTGTGCTTTTCATTCTGTTTTATCTTCGAGCGAGGGCC
TCTGCTTTCATGGAGAATGCCCAACTGCTTTTCCGCGGGCAGGCA
Right flanking sequence: Indices 227422 -- 227921
ACTTGGTTCCAGCCTCGGTGGTCCTACAAGGGTTTACTTTACCATACCATTTAGCATCCTTTTTC
TTCGAACCTTTTTCCTATCTCTGAAGTGTATCCGCTGCTCCCCGCCGGTATAGGTCTAAGGGCGT
TTTGTCCCCTATCTCTCAATAGCACGGAACAAGATATATGTTGTGGCGGTTTCGCCGCCTATTCT
AAGGTAAATGGAGTCAGAGGAGAGGTAGGTAGTATGCCTTTCCCCATTCTGCTAGGGTGGCTTTT
CTTAACTGGGCTAGTGTCCCCTTCTGTTTAAGGTGCATTTTCTTTTCGACTGGTCCTATAAGTAG
TTGTGTGAGGGGGTGCGCGCCTCTTTTTCTTCTTCCGGCTTGAGTTCTTAATGCCTGAAGGGAAA
GACTCTTCGACCACATTAACGGCTTGAGCAAGAGCATTGGTGCTTACACGATGAAAGTAATTTGG
CCAAGCTAGAGGATTTTCCATCGATCGTGACTCAAGAACGTAAGG
Found at i:243965 original size:20 final size:20
Alignment explanation
Indices: 243940--243979 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
243930 CCAACTCAAT
243940 ATCTTAAAATAGAAGTCATC
1 ATCTTAAAATAGAAGTCATC
243960 ATCTTAAAATAGAAGTCATC
1 ATCTTAAAATAGAAGTCATC
243980 TTTCTTCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.15, G:0.10, T:0.30
Consensus pattern (20 bp):
ATCTTAAAATAGAAGTCATC
Left flanking sequence: Indices 243440 -- 243939
TTGAAGTAGCTCTTTCCTGAGATGTCTTTCAAGCTGAAGAAGGAAGGGCGCTTTCCTTCGTTGAA
CACAAGACAGACGGGGACAAATCCAATCCCTTAATTCTTTGATCCCAATTCAATTGTTGTTTGAT
GTAATAATAGAGGTGTCAGGCTCAGACTCTGAGAAAGATGACATGCGGCTAGTCCCAACTCTTAG
TCTCGTAGTCTTGAAACTCAGCCGTACTTCCTTTGGCTGGCCTTTCGATCCCCTCGTTCACAAAG
GGGCGCAACTGAAGCTCATCTAACGATGTGATAGTGGCTGTTCGCTCCTCTTTCTCTTCCTCTTT
TTCTGCTTCTGCTAGGATTTTGTCCTGATAGCGCCGTGCTTGTTCAAGAAAGAGAGAGTCCCTTT
GACGGAGAGAAAGACTCCGGGGATAGATAGTCAATGGCCTATGAGGAAGACATCTCCTCTGTTTT
TGCTCTTATTTTTGGCCTTTGGGCTTTTTGACTGTCCAACTCAAT
Right flanking sequence: Indices 243980 -- 244479
TTTCTTCAAAGGCCGTTGACTCTGCTTCCTTGATTGAATAATCGAAGGTGAATCAATCAGACAGG
ACGGACGTGTGATAACAACACTTGCTTTCGTGCTGGAATTCCCCTTGGCGTCACTCACCTCTCTT
TCCCTTGCTTTGCCCCCGTTTACCACAATGGCTGTCTCGCTGTCTACTGGAGCTCGGATCCGACT
CAAAGTTCGTGTGTATGCGCCCTGCCCAGAGCTAGCCTGAAAGAAAGTTCAATAAAAATGATTGA
CACTTGAAAGTAAGGTGAAGACTCTTTCCCCTAATCCATCCATGAATATACTTTTTTCGCTAAGA
AAGCCTCTACTGGGCGGGCTACTCCAATCATTACTTTTTTTCTGGGTTGTTTCATAACATAAAGT
CATCTAAACAACAGCTTTTAGCTTGCTTCTTGATTGTGGCGATCCCCTTCTTCTGTTCTTGACTC
GTACCTGAAGCTAAGCCGGACTCAAGGAGGCTTCAAAGCCAGATC
Done.