Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_066410
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 300933
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Found at i:6206 original size:8 final size:8
Alignment explanation
Indices: 6193--6219 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
6183 AATGAAAAAC
6193 AAAAACAA
1 AAAAACAA
6201 AAAAACAA
1 AAAAACAA
6209 AAAAACAA
1 AAAAACAA
6217 AAA
1 AAA
6220 GAAAGAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (8 bp):
AAAAACAA
Left flanking sequence: Indices 5693 -- 6192
CTACAACAAGTGGGAGAGGCAGGATTCGAACCTACGTAGAAAAACTTCAACAGATTTACAGTCTG
TCGCTTTTAACCACTCGGCCACTCTCCCCTTCCCGGGGCGAGGCCCCCCTTCGTAGCTTCTGGCG
AAGCTGCGAGTTCATGAGCAAGTGAATGAACGAGCCATGTTCCTAAAAGGAGTGACCCTCTTTCT
TTTCTTCCCTTTCCCTATCCCTTCAAAGCCCGGTTGGGCGCTAGCGCTTGACTAATAGAAAGTCA
GGCTCTTCTGCTGAGCGAAGCTGCGAGCCTACCCTTCTCGAGCCTACAACAATAGCTTACGCTTA
CCAAGCCTAAAAATAGGGCTACAGCAAGCCAAGCAAAGCAAGCTTTCCCCCTTCGTTTGTTGTGG
GTCGCGCCTCACCGCAGGTACTGAATGAATGAAATGAGTGGAGATCTTCCTTCCCCCTTGCTAAT
TACCAAGAACTTCGTTGCCACTAGTGGCGAAGAATAATGAAAAAC
Right flanking sequence: Indices 6220 -- 6719
GAAAGAAAAAAAGAAATAAAGAACTCGGAGCCTAAAGAGAAGTAAGTCTACAAGAAGCTGGCAGA
GCTTTAGCCATTGGACCACATCGATCTATCCTACCTAAACAGTAAGCCTTTTCTTATTCGTTCTT
CGAATGAGGCTAGTGGAGACTAATTCCTTCCGGCTAATGAAGAGACTACTCCAGTCTTCCCATTC
ATTCCCATCCTTCTTCTCCCTAAGAATTGAACGAACCAAGTTCACCTATTCGAGAGTGAGGAAGA
AAAACCAACAAGAAACTTCCCACTTTTGATGTCCTGCGATTCTGCTAGTTTAGAAACTAAGGAGA
AGGACAGGGGGCGCTAGGTCAGAAAAGCGAGAACTCTAAATTCTCCCCAAGTAGGATTTGAACCT
ACGACCAGTCAGTTAACAGCCGACCGCTCTACCACTGAGCTACTGAGGAACAACGGACTTAAGGA
AGCCGACTCTCGTTCTTTGGACCAACCTATGACCGGAGTTCGTCA
Found at i:6228 original size:16 final size:15
Alignment explanation
Indices: 6187--6242 Score: 51
Period size: 16 Copynumber: 3.5 Consensus size: 15
6177 AAGAATAATG
*
6187 AAAAACAAAAACAAA
1 AAAAAGAAAAACAAA
*
6202 AAAACAAAAAAACAAA
1 AAAA-AGAAAAACAAA
6218 AAGAAAGAAAAA-AAGA
1 AA-AAAGAAAAACAA-A
6234 AATAAAGAA
1 AA-AAAGAA
6243 CTCGGAGCCT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
15 6 0.17
16 27 0.77
17 2 0.06
ACGTcount: A:0.84, C:0.07, G:0.07, T:0.02
Consensus pattern (15 bp):
AAAAAGAAAAACAAA
Left flanking sequence: Indices 5687 -- 6186
TGAAGTCTACAACAAGTGGGAGAGGCAGGATTCGAACCTACGTAGAAAAACTTCAACAGATTTAC
AGTCTGTCGCTTTTAACCACTCGGCCACTCTCCCCTTCCCGGGGCGAGGCCCCCCTTCGTAGCTT
CTGGCGAAGCTGCGAGTTCATGAGCAAGTGAATGAACGAGCCATGTTCCTAAAAGGAGTGACCCT
CTTTCTTTTCTTCCCTTTCCCTATCCCTTCAAAGCCCGGTTGGGCGCTAGCGCTTGACTAATAGA
AAGTCAGGCTCTTCTGCTGAGCGAAGCTGCGAGCCTACCCTTCTCGAGCCTACAACAATAGCTTA
CGCTTACCAAGCCTAAAAATAGGGCTACAGCAAGCCAAGCAAAGCAAGCTTTCCCCCTTCGTTTG
TTGTGGGTCGCGCCTCACCGCAGGTACTGAATGAATGAAATGAGTGGAGATCTTCCTTCCCCCTT
GCTAATTACCAAGAACTTCGTTGCCACTAGTGGCGAAGAATAATG
Right flanking sequence: Indices 6243 -- 6742
CTCGGAGCCTAAAGAGAAGTAAGTCTACAAGAAGCTGGCAGAGCTTTAGCCATTGGACCACATCG
ATCTATCCTACCTAAACAGTAAGCCTTTTCTTATTCGTTCTTCGAATGAGGCTAGTGGAGACTAA
TTCCTTCCGGCTAATGAAGAGACTACTCCAGTCTTCCCATTCATTCCCATCCTTCTTCTCCCTAA
GAATTGAACGAACCAAGTTCACCTATTCGAGAGTGAGGAAGAAAAACCAACAAGAAACTTCCCAC
TTTTGATGTCCTGCGATTCTGCTAGTTTAGAAACTAAGGAGAAGGACAGGGGGCGCTAGGTCAGA
AAAGCGAGAACTCTAAATTCTCCCCAAGTAGGATTTGAACCTACGACCAGTCAGTTAACAGCCGA
CCGCTCTACCACTGAGCTACTGAGGAACAACGGACTTAAGGAAGCCGACTCTCGTTCTTTGGACC
AACCTATGACCGGAGTTCGTCACCCTCACATACACCGGGAAAAAG
Found at i:11004 original size:7 final size:7
Alignment explanation
Indices: 10992--11027 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
10982 TTCTTCTCTT
10992 TTTTTTC
1 TTTTTTC
10999 TTTTTTC
1 TTTTTTC
11006 -TTTTTC
1 TTTTTTC
11012 -TTTTTC
1 TTTTTTC
11018 TTTTTTC
1 TTTTTTC
11025 TTT
1 TTT
11028 AATATAATAG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 12 0.43
7 16 0.57
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (7 bp):
TTTTTTC
Left flanking sequence: Indices 10492 -- 10991
TTTTGTTTGATTCCGGCACTTGCGTTCTCATGCCCGGAACCCTCGCGACTGATTGGGAGAAAGAG
CGAAAGCGAGAAAGATGGATTGTTATCCATCGGAAATCGATAGGAATTCCACGGGGATTGCCTTC
TCTTCTAATATATATATATGTTTTTATTTCATTATTAACATCCAATCCCATGCTAATAAGAAAAA
CGAGCGATTGCTAGTCAGCTTTCATTTTCTTAAAAAAAATGGTAGGGACTGAGGCTCTGAAGGCT
TTACAACTTTCTTCAATTAGGGAATAGCGCAGATGGATCAATCACGCGGTTCTGCAGCGTCCTCC
AACTCCCTGTCCGCTCCCCTTCACTTTCTTTGCTGGACGGGAAGATGCGAATCGGGAAGGCCTTC
CCACCACGCGAAGTTCAAACCTCGCCGGAGAGGAATTGAAAACCGGGAAAAAAGCCCTTCGCAAT
CGAAGGTGAAAGCGGGAAAAAGACGACGAAAGCCTTTCTTCTCTT
Right flanking sequence: Indices 11028 -- 11527
AATATAATAGGTCTTCTCCCTTCGATCCGCGAAGTAGGCAAGCAGGAATCTCTCCCCCTTTCTGT
TTATGGATAGAAAGAATATCTCCTTAGGAGAGTATTTTATGAGTTGACTGTAACCCGAAGGCTTC
TTTCAATCGATCTAGTAGGTAAGAAATAAGATCTTCGTATAGTTAATGAATTAAAGCGAAACCAC
TAGGTTAGATCTCGTCTGTGATCCCTCTGGGCTTGTTAATTGAGAGAGAAACCCCTACTATTGAT
CGTGGCCTTCATTGAGTGCATTTTTGGCTCTTTGACATAGTAAGGCGGGAAGGCATGAGCAAGCC
ACTTACAAAGGCCTTTCACAGCTCAAATCCATGCATTAAGCCGCTAATCCCTTTTCTAGCAAAGT
CCCAGCAGGCTACCTCATCGGGAAATTCAATTCTTTCACCGAACCCAGGGGGGGCACGATGAATA
CATTGATTATCTGGGTCCGATCATCGCTAGAGGCCCGTCGACTAT
Found at i:11011 original size:13 final size:12
Alignment explanation
Indices: 10990--11027 Score: 58
Period size: 13 Copynumber: 3.0 Consensus size: 12
10980 CTTTCTTCTC
10990 TTTTTTTTCTTT
1 TTTTTTTTCTTT
11002 TTTCTTTTTCTTT
1 TTT-TTTTTCTTT
11015 TTCTTTTTTCTTT
1 TT-TTTTTTCTTT
11028 AATATAATAG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 3 0.12
13 20 0.83
14 1 0.04
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (12 bp):
TTTTTTTTCTTT
Left flanking sequence: Indices 10490 -- 10989
CCTTTTGTTTGATTCCGGCACTTGCGTTCTCATGCCCGGAACCCTCGCGACTGATTGGGAGAAAG
AGCGAAAGCGAGAAAGATGGATTGTTATCCATCGGAAATCGATAGGAATTCCACGGGGATTGCCT
TCTCTTCTAATATATATATATGTTTTTATTTCATTATTAACATCCAATCCCATGCTAATAAGAAA
AACGAGCGATTGCTAGTCAGCTTTCATTTTCTTAAAAAAAATGGTAGGGACTGAGGCTCTGAAGG
CTTTACAACTTTCTTCAATTAGGGAATAGCGCAGATGGATCAATCACGCGGTTCTGCAGCGTCCT
CCAACTCCCTGTCCGCTCCCCTTCACTTTCTTTGCTGGACGGGAAGATGCGAATCGGGAAGGCCT
TCCCACCACGCGAAGTTCAAACCTCGCCGGAGAGGAATTGAAAACCGGGAAAAAAGCCCTTCGCA
ATCGAAGGTGAAAGCGGGAAAAAGACGACGAAAGCCTTTCTTCTC
Right flanking sequence: Indices 11028 -- 11527
AATATAATAGGTCTTCTCCCTTCGATCCGCGAAGTAGGCAAGCAGGAATCTCTCCCCCTTTCTGT
TTATGGATAGAAAGAATATCTCCTTAGGAGAGTATTTTATGAGTTGACTGTAACCCGAAGGCTTC
TTTCAATCGATCTAGTAGGTAAGAAATAAGATCTTCGTATAGTTAATGAATTAAAGCGAAACCAC
TAGGTTAGATCTCGTCTGTGATCCCTCTGGGCTTGTTAATTGAGAGAGAAACCCCTACTATTGAT
CGTGGCCTTCATTGAGTGCATTTTTGGCTCTTTGACATAGTAAGGCGGGAAGGCATGAGCAAGCC
ACTTACAAAGGCCTTTCACAGCTCAAATCCATGCATTAAGCCGCTAATCCCTTTTCTAGCAAAGT
CCCAGCAGGCTACCTCATCGGGAAATTCAATTCTTTCACCGAACCCAGGGGGGGCACGATGAATA
CATTGATTATCTGGGTCCGATCATCGCTAGAGGCCCGTCGACTAT
Found at i:11017 original size:19 final size:18
Alignment explanation
Indices: 10980--11027 Score: 69
Period size: 19 Copynumber: 2.6 Consensus size: 18
10970 CGACGAAAGC
* *
10980 CTTTCTTCTCTTTTTTTT
1 CTTTTTTCTTTTTTTTTT
10998 CTTTTTTCTTTTTCTTTTT
1 CTTTTTTCTTTTT-TTTTT
11017 CTTTTTTCTTT
1 CTTTTTTCTTT
11028 AATATAATAG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
18 11 0.41
19 16 0.59
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (18 bp):
CTTTTTTCTTTTTTTTTT
Left flanking sequence: Indices 10480 -- 10979
GACGTTCGGACCTTTTGTTTGATTCCGGCACTTGCGTTCTCATGCCCGGAACCCTCGCGACTGAT
TGGGAGAAAGAGCGAAAGCGAGAAAGATGGATTGTTATCCATCGGAAATCGATAGGAATTCCACG
GGGATTGCCTTCTCTTCTAATATATATATATGTTTTTATTTCATTATTAACATCCAATCCCATGC
TAATAAGAAAAACGAGCGATTGCTAGTCAGCTTTCATTTTCTTAAAAAAAATGGTAGGGACTGAG
GCTCTGAAGGCTTTACAACTTTCTTCAATTAGGGAATAGCGCAGATGGATCAATCACGCGGTTCT
GCAGCGTCCTCCAACTCCCTGTCCGCTCCCCTTCACTTTCTTTGCTGGACGGGAAGATGCGAATC
GGGAAGGCCTTCCCACCACGCGAAGTTCAAACCTCGCCGGAGAGGAATTGAAAACCGGGAAAAAA
GCCCTTCGCAATCGAAGGTGAAAGCGGGAAAAAGACGACGAAAGC
Right flanking sequence: Indices 11028 -- 11527
AATATAATAGGTCTTCTCCCTTCGATCCGCGAAGTAGGCAAGCAGGAATCTCTCCCCCTTTCTGT
TTATGGATAGAAAGAATATCTCCTTAGGAGAGTATTTTATGAGTTGACTGTAACCCGAAGGCTTC
TTTCAATCGATCTAGTAGGTAAGAAATAAGATCTTCGTATAGTTAATGAATTAAAGCGAAACCAC
TAGGTTAGATCTCGTCTGTGATCCCTCTGGGCTTGTTAATTGAGAGAGAAACCCCTACTATTGAT
CGTGGCCTTCATTGAGTGCATTTTTGGCTCTTTGACATAGTAAGGCGGGAAGGCATGAGCAAGCC
ACTTACAAAGGCCTTTCACAGCTCAAATCCATGCATTAAGCCGCTAATCCCTTTTCTAGCAAAGT
CCCAGCAGGCTACCTCATCGGGAAATTCAATTCTTTCACCGAACCCAGGGGGGGCACGATGAATA
CATTGATTATCTGGGTCCGATCATCGCTAGAGGCCCGTCGACTAT
Found at i:23310 original size:12 final size:12
Alignment explanation
Indices: 23293--23317 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
23283 TATGCGACCT
23293 TCATTCACTAGA
1 TCATTCACTAGA
23305 TCATTCACTAGA
1 TCATTCACTAGA
23317 T
1 T
23318 GTAAAGAAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.24, G:0.08, T:0.36
Consensus pattern (12 bp):
TCATTCACTAGA
Left flanking sequence: Indices 22793 -- 23292
CTCCTCTACCCTTGGTACAGAGCTTCCATTTCGAGAACCTTTCATCCGAATCTCCCGGCTGATTC
AACACGAGCAATTAAAACTACCGACTCTAGAACAGCGAAAACAGAGCTAATACCGATTCCTGGAC
CTGGTGAAAGCTTTTTCCCTGCCTTTATTCAACAGTCCGAGAGGATCTTGGACAAAGGATTACCG
GCCTCCCTATCCCATCTAATAGCCTATTGGTCTTACCAGCAGCCTATCCTATGCTCTGCTTCCGA
AGAGGCTAGACCGCTAATGCCGTTGAATGAACGTCCTTTCGGACATGCTGTTGAAAGATGAGTCC
TCTGTGCACATCAAATTATTCCTGAAACCAGGGCATTTCTTGCTTCTGATCTTTCCTGTCTTCTC
TTATCTGCGGCGTCTTGCTTGCCCTTTTAATATGCTATTTATCTCCCCTTCGTTTAGTTCAATAG
CAGCGAATTCTATAACAGACGAGTCTTGCAGCGCATATGCGACCT
Right flanking sequence: Indices 23318 -- 23817
GTAAAGAAACCTTCCTAAGGGGAAAGCCACATACCCACTTTTCCCCCTCCTCCTTCCTCCGTTAT
TTTAGCTGCTACGGCGACAGACGCATGAACAAGTGCCATTTGGAGGGAGGATTCTATGGGAAATG
GAAAAACGTCGAAGTAAGCAGTGGCTTATAAATCGGTACTAGAAGCCCGAGAGCTTGCCTGTAAG
ACAATTAACCCCACCTTATGTGCCTAGCCCAGCCCTTCTTCTCTTCCCCTCCGTACTGTATGACT
GTATGTAGGGAACACCGCCTCAGAAGGTATTTGATCTGTATTTCCATTTCCAATACATCTGAAGG
AGTTTCCCTGAAAGCTATGCTATGCCTTTTTACCTCTCCCTGTCGCAGGAGCTTAGCCATGTGTG
ACCTGAAATGGATGTAGAATAAATACCCGGTAAAAGAAGGGACTCTGATGAAAGGCCCTTAAGGA
AAGGAGCTTTCCTATTTTTTTTCAGGCGGGGAATCCTCATTGTGT
Found at i:42413 original size:6 final size:7
Alignment explanation
Indices: 42396--42421 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
42386 ATGCATCATA
42396 AAAAAAC
1 AAAAAAC
42403 AAAAAAC
1 AAAAAAC
42410 AAAAAAC
1 AAAAAAC
42417 AAAAA
1 AAAAA
42422 GAAAAAGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (7 bp):
AAAAAAC
Left flanking sequence: Indices 41896 -- 42395
AGTAGTCCAACTCAATGTCTTACGCATCAGTGGCATTTGAGTGAAAGCAGTAAGTCAGTGGCCAA
GAATCATCGATTTTGGAGTTACCAGCTCAAGGCAGCTCATGGGAATTTATTTAAGTAAGAACGAT
CCCCAGTGTCATCCTCTTCGTCTTCTCTTTAGGAAAGCAAGTCCCATCGAGTTAGCTCTTGGAGT
CAAGGCATGCCTTAAGGTAGCGACTGACTTTCAGGTGAGATGGTTCAATAGTAGATTAGATAAAG
GCTCTTGCTACTTCCCACGAGGGGAGGAAAGTAAATAGCGTAGATAAGGAAGTGGCTATTCTTGT
TTATTCATGACTCCGCTGCGCTCCTATTTCATGGAATAAGCGCCTTTTCTCTTACAGACAAAAGA
AATGGATTTCTTCCGGCTAGCTCGAAGGGAAGGAAAGAGCGCTATAAGAGAAAGAGTGCCTCGAT
CATGGGATTTTTACTGAAAGCAGAGGAAGCATTCGATGCATCATA
Right flanking sequence: Indices 42422 -- 42921
GAAAAAGAAAGAAAATAAAAAGAAAGTGCAGCTGCCAGAGCCCCGTATTTACCAGCGGGGTCCCG
AGATATTCTATGATCAAAGGCTTTGTGGTTGTCACGAACTGGATTCGAACCAGCGCCTCCGGGAG
CAACAGGCCCAGCAAACTACCATTCATTCTGATCGCGACTTTGTTTACCCGGTTCCCCTCGCGGC
TAAAAGGTACATCCGGGCCGCTCGCATGGACCTACTTACCTTGCTTGTAGACCAGCTGCAGAGCT
AACCCTTGTTCTATTGGTTTGATGCTACCAAGACGATTTCTTTATGCCCATCAAAACATCGTTCA
TGTCCATTTTTAGGGCTTCTTTTGTCAACTCGTCGCTGAGTTCTTCAGTCACCTGAGACTTTCGA
TGTTTGTCCCGCATATCACTAGATCGATCGGTATCTTTACAAATTGAGAAAGCTTTCTCAATTCA
TACTTAGCCGCGAGCAATCTACGTTTGCGATCTCGTATATTTTGC
Found at i:42427 original size:21 final size:21
Alignment explanation
Indices: 42397--42446 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
42387 TGCATCATAA
* *
42397 AAAAACAAAAA-ACAAAAAAC
1 AAAAAGAAAAAGAAAAAAAAC
* *
42417 AAAAAGAAAAAGAAAGAAAAT
1 AAAAAGAAAAAGAAAAAAAAC
42438 AAAAAGAAA
1 AAAAAGAAA
42447 GTGCAGCTGC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 10 0.40
21 15 0.60
ACGTcount: A:0.84, C:0.06, G:0.08, T:0.02
Consensus pattern (21 bp):
AAAAAGAAAAAGAAAAAAAAC
Left flanking sequence: Indices 41897 -- 42396
GTAGTCCAACTCAATGTCTTACGCATCAGTGGCATTTGAGTGAAAGCAGTAAGTCAGTGGCCAAG
AATCATCGATTTTGGAGTTACCAGCTCAAGGCAGCTCATGGGAATTTATTTAAGTAAGAACGATC
CCCAGTGTCATCCTCTTCGTCTTCTCTTTAGGAAAGCAAGTCCCATCGAGTTAGCTCTTGGAGTC
AAGGCATGCCTTAAGGTAGCGACTGACTTTCAGGTGAGATGGTTCAATAGTAGATTAGATAAAGG
CTCTTGCTACTTCCCACGAGGGGAGGAAAGTAAATAGCGTAGATAAGGAAGTGGCTATTCTTGTT
TATTCATGACTCCGCTGCGCTCCTATTTCATGGAATAAGCGCCTTTTCTCTTACAGACAAAAGAA
ATGGATTTCTTCCGGCTAGCTCGAAGGGAAGGAAAGAGCGCTATAAGAGAAAGAGTGCCTCGATC
ATGGGATTTTTACTGAAAGCAGAGGAAGCATTCGATGCATCATAA
Right flanking sequence: Indices 42447 -- 42946
GTGCAGCTGCCAGAGCCCCGTATTTACCAGCGGGGTCCCGAGATATTCTATGATCAAAGGCTTTG
TGGTTGTCACGAACTGGATTCGAACCAGCGCCTCCGGGAGCAACAGGCCCAGCAAACTACCATTC
ATTCTGATCGCGACTTTGTTTACCCGGTTCCCCTCGCGGCTAAAAGGTACATCCGGGCCGCTCGC
ATGGACCTACTTACCTTGCTTGTAGACCAGCTGCAGAGCTAACCCTTGTTCTATTGGTTTGATGC
TACCAAGACGATTTCTTTATGCCCATCAAAACATCGTTCATGTCCATTTTTAGGGCTTCTTTTGT
CAACTCGTCGCTGAGTTCTTCAGTCACCTGAGACTTTCGATGTTTGTCCCGCATATCACTAGATC
GATCGGTATCTTTACAAATTGAGAAAGCTTTCTCAATTCATACTTAGCCGCGAGCAATCTACGTT
TGCGATCTCGTATATTTTGCTTCTCCGACATCTTACTGACTTTCC
Found at i:42436 original size:15 final size:15
Alignment explanation
Indices: 42418--42447 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
42408 ACAAAAAACA
42418 AAAAGAAAAAGAAAG
1 AAAAGAAAAAGAAAG
*
42433 AAAATAAAAAGAAAG
1 AAAAGAAAAAGAAAG
42448 TGCAGCTGCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.03
Consensus pattern (15 bp):
AAAAGAAAAAGAAAG
Left flanking sequence: Indices 41918 -- 42417
CGCATCAGTGGCATTTGAGTGAAAGCAGTAAGTCAGTGGCCAAGAATCATCGATTTTGGAGTTAC
CAGCTCAAGGCAGCTCATGGGAATTTATTTAAGTAAGAACGATCCCCAGTGTCATCCTCTTCGTC
TTCTCTTTAGGAAAGCAAGTCCCATCGAGTTAGCTCTTGGAGTCAAGGCATGCCTTAAGGTAGCG
ACTGACTTTCAGGTGAGATGGTTCAATAGTAGATTAGATAAAGGCTCTTGCTACTTCCCACGAGG
GGAGGAAAGTAAATAGCGTAGATAAGGAAGTGGCTATTCTTGTTTATTCATGACTCCGCTGCGCT
CCTATTTCATGGAATAAGCGCCTTTTCTCTTACAGACAAAAGAAATGGATTTCTTCCGGCTAGCT
CGAAGGGAAGGAAAGAGCGCTATAAGAGAAAGAGTGCCTCGATCATGGGATTTTTACTGAAAGCA
GAGGAAGCATTCGATGCATCATAAAAAAACAAAAAACAAAAAACA
Right flanking sequence: Indices 42448 -- 42947
TGCAGCTGCCAGAGCCCCGTATTTACCAGCGGGGTCCCGAGATATTCTATGATCAAAGGCTTTGT
GGTTGTCACGAACTGGATTCGAACCAGCGCCTCCGGGAGCAACAGGCCCAGCAAACTACCATTCA
TTCTGATCGCGACTTTGTTTACCCGGTTCCCCTCGCGGCTAAAAGGTACATCCGGGCCGCTCGCA
TGGACCTACTTACCTTGCTTGTAGACCAGCTGCAGAGCTAACCCTTGTTCTATTGGTTTGATGCT
ACCAAGACGATTTCTTTATGCCCATCAAAACATCGTTCATGTCCATTTTTAGGGCTTCTTTTGTC
AACTCGTCGCTGAGTTCTTCAGTCACCTGAGACTTTCGATGTTTGTCCCGCATATCACTAGATCG
ATCGGTATCTTTACAAATTGAGAAAGCTTTCTCAATTCATACTTAGCCGCGAGCAATCTACGTTT
GCGATCTCGTATATTTTGCTTCTCCGACATCTTACTGACTTTCCC
Found at i:51759 original size:53 final size:53
Alignment explanation
Indices: 51679--51784 Score: 212
Period size: 53 Copynumber: 2.0 Consensus size: 53
51669 GAAAAAGGGG
51679 GGGGGCAGGGAGCGGAATATCATTCCTAACCTAACGGGGGATCTTTTCTTTTT
1 GGGGGCAGGGAGCGGAATATCATTCCTAACCTAACGGGGGATCTTTTCTTTTT
51732 GGGGGCAGGGAGCGGAATATCATTCCTAACCTAACGGGGGATCTTTTCTTTTT
1 GGGGGCAGGGAGCGGAATATCATTCCTAACCTAACGGGGGATCTTTTCTTTTT
51785 TCGTTTCGCA
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.21, C:0.19, G:0.30, T:0.30
Consensus pattern (53 bp):
GGGGGCAGGGAGCGGAATATCATTCCTAACCTAACGGGGGATCTTTTCTTTTT
Left flanking sequence: Indices 51179 -- 51678
TGAATAATGAAACATGAGGAAGAGTATACCCTGTAGTGACATAGCAGTTCTCCTAATCGACTACT
TATCATAATGAACATTCAAAAAAAGCCCTTTCTCGGATTTGAAGCGATGACTTAAGCCTCTTTCT
TAGCTCAGGGCCTTTAAAGTGAAAGAGCGTGACTCTTTAAAATAAAACCATTTGATTCAATTCAT
GAATTAGCCCACTATGAGTCTACTCTACTGCATTTAAAAAATAGATAATTATATAGATATATATA
ATTAATTATTATTATTATTAGAATATAATATAGTATATCATTCGTGTTTCTGTTACAACACGGCG
AAAGTCAATAGTTCGAATGAAGAGAAAAAGTGGAGGCTGTACACCTGGGATTGTAGTTCAATCGG
TCAGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAGCCCCGTCAGTCCCGACGCCGGATT
CAAAAAATACATCAATTCATCTCTCCATTTTCTGTGAAAAAGGGG
Right flanking sequence: Indices 51785 -- 52284
TCGTTTCGCATTTCTCATCAAATAAATAGGGGAATTCTCATTACTGCAACTAGTACCGGGAGAGA
GACATATGTGGATTAGTACAATTATTGGCATATTCAGGATTCCAAGAGAGACTGGGTCTGCCGAT
TGCTCTCGTTAACGACCACAAAGGCATACATAGAAGGCAGATGAGAGAAAGCGCTCGATGAACGA
TGATTGAAGATTGCAGCATCTTTTTGATAAAGACAGCATTAGACCTGTACATTTTTGAAGCAGAA
TTCGGTCAGCGCGTCGACCTGGTACAAAAGGGCCATCTTACTGAATCCGAAAGGTCGACTACGAC
AAAAACGTAGTGATTCCCCCCTTGAATTTAAGAGATAGGGCAATCGTCCTACGAAATCTATGGTT
ATGCTTTTCCCATGGCCAGGAAGGTATTGGGCTGACAAAGCCCCAACTTACTGTTGGACGGCTTC
CACGTGCTGCATAGAGCACACACAACCCATCACCGTTGGACATCT
Found at i:55018 original size:24 final size:24
Alignment explanation
Indices: 54990--55037 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
54980 TAGTTTCCGC
54990 TTATAGTCTTACCAAGGTGTAGCG
1 TTATAGTCTTACCAAGGTGTAGCG
55014 TTATAGTCTTACCAAGGTGTAGCG
1 TTATAGTCTTACCAAGGTGTAGCG
55038 CATAGCCATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (24 bp):
TTATAGTCTTACCAAGGTGTAGCG
Left flanking sequence: Indices 54490 -- 54989
GAGGCTCCACTCTATCCTGTTGATAGCTGGAGGAAGAGGGAAAATAGGAATAATACCCTGCTTTT
AGGGGGACTCAAGTAGATTCCCTCATCTTTCGCAACTCGATTCCCTCATCCATAAGGACAATGGG
AAATACGAATCCCTAGGACAATGGAAAACTTTATACCTTTCCTTTACTGTAAAGTGAGGCACTTA
TTAACTCCTCGGACATTCACAATGTCAGTAGCTTGCTGTCTTCTCCCTCACAGCGCATTCCTTTT
GAAAGCAGGGGTTGCCAGCTGAAAAAAAGTAGACCTATATTCACCAGCTGTCTTTCTTTCAGTTC
CGTTCCAATTTAACCTTAATAGGTGGGCTGGGATACTAGCAGGGAAGAGGAATTAAGTAATCGCT
TTTCAAAGCTCTTTACCTAATTCGTGTGTCACCGCTGAGATGGTTGTTGTTCGAAGACTTACCGT
GAATAATAGAATAGGTTGATGAAAACGAATCTTATTAGTTTCCGC
Right flanking sequence: Indices 55038 -- 55537
CATAGCCATCTACTTGTATGCGAAGGCTGTTAAGCTGTTGTATAGGAATGCAACCTATCCCCCTC
CTATGAAAACCCTATCAACCAAGAATCCAATGGAACTAGACACCGGAAGATAAGAGGATGGAAAC
AAGATGTTAGCAAGCCTGCTAGACCGTGTTTACTCATGCTCTGGTTACTACCCATCCTCAATTGT
TTTTTGCTAGCTATCCTAGCAGTTACTAGATGCTGACTCATTCCCTTGAATTATTCTCTTTTGTT
TTGCTCCCTCACACCTTGAAGAAGAGCTGATCTTTCCAGGTCCATTCGAAGCTGTCCGTTGCCAT
AGAGAAACGATCCCACAACTTGGGTTACAAAGTGGAACGATCCACTCCGCGCTTTCACCTGTACC
ATATTCTTGCTTGTTATTCTTCAGGAATCTGCTCTAAAGACCCGAAAGCAATGAGGTGCTGGTTC
TGCGTGGGTTGGATAGCTCACCGGTCATGGGAGAGACTCCCTGGA
Found at i:55860 original size:20 final size:20
Alignment explanation
Indices: 55835--55881 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
55825 AAGAAGCAAG
*
55835 TAAGGATTGCTGTACTGAGC
1 TAAGGATTGCTGTACAGAGC
55855 TAAGGATTGCTGTACAGAGC
1 TAAGGATTGCTGTACAGAGC
*
55875 TACGGAT
1 TAAGGAT
55882 ATACTTCTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.28
Consensus pattern (20 bp):
TAAGGATTGCTGTACAGAGC
Left flanking sequence: Indices 55335 -- 55834
AGGTCCATTCGAAGCTGTCCGTTGCCATAGAGAAACGATCCCACAACTTGGGTTACAAAGTGGAA
CGATCCACTCCGCGCTTTCACCTGTACCATATTCTTGCTTGTTATTCTTCAGGAATCTGCTCTAA
AGACCCGAAAGCAATGAGGTGCTGGTTCTGCGTGGGTTGGATAGCTCACCGGTCATGGGAGAGAC
TCCCTGGACATTTAGCATTGGTTCCGGAGGGTAAAGTGATCTCACATCGGCTTGGAAGAGATTGC
GGGACAATCTATGGGATACGGAATAAAATAGACTCACTTCAGCAAGGAAGAGTAAAAAAAGCGAA
AGAGGCTTTAGTTATTTAGCTGTACTTTGAGGGAAACCAAGATGCTTGGGAGAAAGGTTGAGGGT
TCAGAGTACCTGATAACCCCGCTAGGACTGGCAAGGGAAGGAGCACCGGGCCTACCTTTACTCGA
GATCTCCTGTGTAATAGCGGGACACTTCGACGGCAAAGAAGCAAG
Right flanking sequence: Indices 55882 -- 56381
ATACTTCTCAGCACTTTACCTATTGCTTCGCTCTAGTGACAACGTACCTTTGGTGGATAAACTTC
TACGAAAAAAGGCTAGAATAGGTAAGATAGTTGGAAAGCCAGAGGCTAGTGAAGGGCTTGACTAA
GGATTTCTTACCCTGTCTCTGCAAAGGCTTGTTAGAACTCTCATCACCCATATGGGGCAAAGGGT
GTCTACCTCAAGTACGGTTTACAACCCTGTGTCGCTTTCGGGTACAGGTTCCCTTTGTTGAAGGC
CGTTCGAGCTTTTCCTGGGAGTATGGCATGGGTTACTTCAGCGCCTGGTACTCGAACATTGGCTC
GAGGTATGAGTTGATAGAAAAAAGCTAAATGCTCTTAAGATCGTCTCTCTGTCTGCATTGTTGTG
GTACCTAGGCTTTCTGACAGATCTGAGCGTGCTATTACGCATTCAATCTTCTTGACATAAGTACT
AGGTTATCAAAGTGCAGGGAACGTATCCGGCATAGCTACAGGGGA
Found at i:60677 original size:18 final size:18
Alignment explanation
Indices: 60656--60690 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
60646 TTCTTATCTG
*
60656 TCTTAACCACCTTGGTTT
1 TCTTAACAACCTTGGTTT
60674 TCTTAACAACCTTGGTT
1 TCTTAACAACCTTGGTT
60691 GTTTCCTTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.20, C:0.26, G:0.11, T:0.43
Consensus pattern (18 bp):
TCTTAACAACCTTGGTTT
Left flanking sequence: Indices 60156 -- 60655
TAAATGCCTATATTGCTTTATAATGTTATTGTTATGTTGATGTTATATTAAAGAATGAAATCTAA
AAAAGTTGCTTAGTCCCATTCTTTATAATTGTCTTTCTCATACTGTGTAAACGAACTTCAAGTCT
GAATTGTGTACTGTACTCAACAGGAAGCGTCACAGCCCATCCCGATGTCATTCTCCATTCCAATT
GAAATAGCACAGAATCTAGCTCTCGCTATCGTGCCTCAGAAGCTCTAACTATGCCTTCATCCGCC
CCTCCGAAAGAACTCCAACTATTGGTTTATGCGCTCCAGTAAGCGATTTCGTCTCAAGTGCAGCT
TTTACGTTACGACTATACTTCGTTGCTGTGCTGCTCTCTGGGTTGTGAAAGAAGTGCAGTTTTTA
CGTTAGAGGGGGATCTCTCTGGTATACTTTTTACGGAGGTTTCGTCTTGTCAGTCTGGTTTTTCC
TCTCTGTTTTCTTAACAACCTTGGTTTTCTTGGTTTTCTTATCTG
Right flanking sequence: Indices 60691 -- 61190
GTTTCCTTAGTGAATTTCTTCATCTCATCTTGAAGATGATCTATCTTACTTTTCATCTCGGAGAT
CTCTCTATCCTTCTCTGAAATGATGCCGATCATCTCTCTATCCCTTTGAGAGAGTTTTTCACTGA
GAATCTCACTCTTAGTCTGAAGGCGATTCATTTCATTCCTTAGATAGAATACAATTTTTTCGCCA
CTGCGGGGGTTTATGTTAGACAGATCTTCTACATGTATAGGTTTAGTATCAATCCATTTATTATT
ACTATATACAGGTATCCTCTTTGTACCTCAAGTTCTATATAGAACAGATTTCTTTACAACTGTTC
AGGATTATATGAAAAAAGACCCTATCAATGTATGGGTTTATGATCGAATTCACAAGAAGAGGCGT
CAGGTTACTCTTAGAGTCCCTTCGGAAACTAGAGATAAAAGGAAGACTCAAGTATCTACCTTCGT
CAATTTCATTCACCAAAAGGATGCATATATTGCTATGAATGTTAT
Found at i:61716 original size:21 final size:21
Alignment explanation
Indices: 61692--61737 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
61682 TGTATTTCCG
*
61692 GAATCATTTGAGTCATTCATC
1 GAATCATTTGAGTAATTCATC
61713 GAATCATTTGAGTAATTCATC
1 GAATCATTTGAGTAATTCATC
61734 GAAT
1 GAAT
61738 TATAGTGTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (21 bp):
GAATCATTTGAGTAATTCATC
Left flanking sequence: Indices 61192 -- 61691
TTGGAAATGCTTAACCAGGGATCCCCCATATACACAGTTCATGACAACTTTATAACTACAGCTGA
TCATAGCAAGAAACTGCCTGATACTTATGTCAATATATTTTGTAAAATGGATCCTCTTTCTATCA
TCAATGAGTATATCTATCACAATGTGATTGATTATCAAGAAAAATGATTAGATGGTGGTGAATTT
GTTTACGATGAAAAAGGTATTGATACAGAAAACTGGAAAGGTATAATCAAGCAGGAGGATCTGAA
AAAATACTTGTATAAAAATATACCAGAAAAACAAAAAAAGAAGAAAAAGGATAGGGATACGTGGG
AACAAAAGATTCAAACCATAATGACTTCTTACGAGAACTATGTTAATTTCTTATGCGAACCTTTT
GATAAGAGTTTAGGAAAAAATGAAAAAAAAAGATGTTTTTCGAAGGTAATTAGTAAACTTGATCG
TGATACTAAGTATCAATATTATAGGGAGAAATTGATGTATTTCCG
Right flanking sequence: Indices 61738 -- 62237
TATAGTGTTCATTATTAAAGAAAAAAAGATGTGGACTGGACCCACTTACTTTTCTTTGTATTTCC
TGCTGAAACCAACCTAAGAGAAAGAGACCCAGGTGATATGGATTCGCTAGGACGGAGTTGCTGTC
GATTGAGGATTGGCCGAGGGGAGTGCCATCATGTAGCTGGGTACAAATAAGCCAGTGAAAGAGGA
GTAGTCAGGGTACGACGAAGCACGCCTGGTACGTAAGCGAATACGGATCACGTGGGTTTGTACTG
ATCCGCTTTCGAGCTGTCGAGTGACGATTGCTCCATCTATTAAGAAAGGACGCGGGGGGCCTGTC
TTATAATAAAGGGGGTACTCTCTTCTCTGATGTGCGCTATATTATTGTGTCCTATTCCTGAAGGA
GTGATCCGGGATTAAGCCACGTGGCGATACCCGCCAAAAGAAAGGGGGCCTTTCGTACGGATTGG
AGTACGAAGAGAATTCTTCAGCACACTAAAATCTAGTGGATCCGG
Found at i:95918 original size:39 final size:39
Alignment explanation
Indices: 95863--95941 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
95853 CCCATCCTTC
*
95863 AATATCATGATTGGGTCGACCAGGCCAGATCATGAGTGA
1 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
*
95902 AATATCATGATCGGGTCGACTAGGCCAGATCATGAGTGA
1 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
95941 A
1 A
95942 TAGAAAATCG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.32, C:0.18, G:0.28, T:0.23
Consensus pattern (39 bp):
AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
Left flanking sequence: Indices 95363 -- 95862
GGAAGCCGGCTTGTGCTGGATTCCTGCATACCTCTGGCAGGCATCGCAGCTCTTAGCATGTGCTA
CGTAATCTGCAAGGACCGTAGGCCAGTAGTGGCCATGTCTCCGGATCTCTCGAATTTCCCTCAGC
GCGCTCGATCTACCTATCTTTCTGAGTTTGATTGGTTTTCGCTCCAGCTGACCTTTCCATTTAAT
CACTGACAAAACCTACCTTTCAATTCTTCTTACCCTATGAGCTTTCAGCAAAGGACAGATTTCTT
GGTCCATTGACATCGATCAACGAAATAGACCTCCTTCTTTCACTTTTGTCGTTGTCTTCCAATTC
AAAGAGCCCCATTAAGTAAGTGTTCCGCGAGAAAAGAGAGGCTGACATCTTTTCTTATCTATCTA
TTTTCGTAAATGAAGAAGATAAGTGAGAGCTTACTGACTGCATCTTCTAAGAAGGGCTTGGAAGA
AGAAATAGAATCTCCTTTCTTTTTCGAGAAAAGGTCCCATCCTTC
Right flanking sequence: Indices 95942 -- 96441
TAGAAAATCGAAAATGTACATAGCAGTTCCAGCTGAAATACTTGGAATAATTCTACCACTTCTAC
TAGGAGTAGCCTTTTTAGTGCTAGCTGAACGTAAAGTAATGGCTTTTGTGCAACGTCGAAAGGGT
CCTGATGTAGTGGGATCGTTTGGATTGTTACAACCTCTAGCAGATGGTTTTAAATTGATTATAAA
AGAACCTATTTCACCAAGTAGTGCAAATTTCTCCCTTTTTAGAATGGCTCCAGTGGCTACATTTA
TGTTAAGTCTGGTCGCTCGGGCCGTTGTACCTTTTGATTATGGTATGGTATTGTCAGATCCGAAC
ATAGGGCTACTTTATTTGTTTGCCATATCTTCGCTAGGTGTTTATGGAATTATTATAGCAGGTCG
GTCTAGTAATTAGGGGGCGGCCGTTCGGTCGCCTATGATACTAGGATCAATAGGTCAAAAATGGG
TTTGTGCCGCAGGTGTTGAACGATCCACTCTACACAGGTGTGGGC
Found at i:105531 original size:1 final size:1
Alignment explanation
Indices: 105525--105580 Score: 112
Period size: 1 Copynumber: 56.0 Consensus size: 1
105515 AGGAAATTTC
105525 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
105581 GCCTTGCGAG
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 55 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Left flanking sequence: Indices 105025 -- 105524
TTTACTTTTTTGAATGCAGTTCGGGATCGAACGAGGTTCTTAAAAAGAAAGGCTATTCATCTTCC
CTTACGGGCTTATGGATCTAGTGGATCGTCCCAGTAAACTACTACTTATACTAATTATACTAACT
ACTTAGTTATCGTCACTGGCTGCAGATCTGGCTTGGCTCGATAGCCTATTGAATAGGATGGAGGA
AGCCTTGTCCCTAGCTTCTGAAACAAGAGAACGGACCGACTCTAACTAATCCACTCCTACTAACA
GGAAGTGTAAGGGCAGACCTCGTCCTACTTTCACTCTACTTTTTCCATTTCAATGCTAGCTCGAT
TGCAGCTAGATTTCTCAGTAGGGACTACTAATGGACTATCAGAAACGAAGTGAGGGATTGGACGA
CGGACGGGACAACTAGCTAATTGGGGGACGGAGGGACAGAGAGAACTCTTCAACGAAAATCAATC
TTGAAATTAAATAATAATAATCTCTATCGTTCAGTAGGAAATTTC
Right flanking sequence: Indices 105581 -- 106080
GCCTTGCGAGATCGTAGCTCGTTCACCTAAGATGGAAAAGCACTTGGTTGAAAGCCTAGCAACGA
GAAAAAAGAGTCCCATGCATCCTTTAGTCAACAACCATTAGTAAAGAATAGGATCAGACCAAGTG
CGAGATTGGATCAAAAATAACGTATAGAAAGGATTTGCAACAGAGAGCCTCAACAGCAGCTCTTA
ACCCACACTTTTTGCTAGTCAATTGCATTTCAAGTTCCCGCACAGTTGATCCAGCAAAAAATAGA
ATCTAGTCTCCGTGAGTCTATACCAATATTACACTTTCTTTAAATACTTTTTTTCTATAGGTTAT
GTTATAAGGAAGCCGAATTTCCTAGGAAGAGAAGCGTGAGGAAAAAGAACAGGGAATAAAGGAGA
AAAGGAGGATTGAAGGGGACGTGTAAGCATGAAGGCGGATACTAAGGTCAATCTTGGTAGTGAAT
AGGTCAGCAGTTGGAGAGGAGAATCTTTCTATAGATAGAAGCAAG
Found at i:108246 original size:24 final size:24
Alignment explanation
Indices: 108201--108246 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
108191 GAAAAGAAAC
* *
108201 TGGTTCACGTAAGAATGGACGTCT
1 TGGTTCACGCAAGAATGCACGTCT
*
108225 TGGTTCACGCAAGAGTGCACGT
1 TGGTTCACGCAAGAATGCACGT
108247 AGAAAAAGGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (24 bp):
TGGTTCACGCAAGAATGCACGTCT
Left flanking sequence: Indices 107701 -- 108200
ACAGAATCCAACCACACCGGAATGGATGGTACAAAGTCCTCCAGCTTTTCATACTTTTGGAGAAC
TTCCAGCTATCAAGGAGACGAAAAGCTCTGTGAAGTAAAAGAAAAAAAGGTCGCCGATTGCTACT
AAGAACCTAACAGAACTTTTCAAAATTGAAAACGGATCAGTCGACCTGGTCTACGAATCTATTCT
AACTATCAACGAATTCTTCAAATTTTAGGTGGGATGGGGATTGTAATTATTTATACTTCTCGAGG
TATAATGACAGACCGGGAGGCTAGATTCGAAGGAATCGGCGGATCAATTTTGTGTTATATATGGT
ATTCTGATATCCGAATTAGATCCTAAATTTACTATTTGTGAAAAAAAGAGAAAGGGCGGGTTGTA
TAATCTCACTCCTCCCCCATTAGTTGATACTTCAAGGAGGTTTTATCCGGAATGAATAAAAAAAG
AAAAAAGAAAGAAAAAGAAAATAAATAAAAGAAAAGAAAAGAAAC
Right flanking sequence: Indices 108247 -- 108746
AGAAAAAGGACTTATTCATGTTCAAGCAAGCTTCAACAATACCATTGTGACTGTTACAGATGTAA
GGGGTCGGGTGGTTTATTGGGCCTCCGCCGGTACTTGTGGATTCCGGGGTACAAGAAGAGGGACA
CCGTTTGCTGCTCAAACTGCAGCGGGAAATGCTATTCGTACAGTAGTGGAGCAAGGTATGCAACG
AGCGGAAGTGATGAAAAAGGGTCCTGGTCTCGGAATCCCATCTTCCAGGGTCAGGAGCCACGGAG
CCAGAAGACCGTTCGACGATCCTACTTCTGATGTCATCCCCTTCTGTTCCCTCCCTGTTGAATAT
CCCAACTATTCTCTATCAATTCCGGGATGGATCATGAAAGATTTTGTCTTGAAATGCCGATAAGG
AATAGCCAGTTATAGAAGCGGGTGGCAGGGAATGAAAGCAAGCACTCCTGTGCTATCAAAGTGGA
GAGATTAGTTAGAGCTAGGGGCAGGCCATCTATTCCTGCTTGACT
Found at i:120662 original size:18 final size:17
Alignment explanation
Indices: 120639--120672 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
120629 TTGATTTCGC
*
120639 CCATTGTTGTTGCGAGCT
1 CCATTGTAGTTG-GAGCT
120657 CCATTGTAGTTGGAGC
1 CCATTGTAGTTGGAGC
120673 GAGAGGAACG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.15, C:0.21, G:0.29, T:0.35
Consensus pattern (17 bp):
CCATTGTAGTTGGAGCT
Left flanking sequence: Indices 120139 -- 120638
GTATCCCGACAAGGTGAAAGCCATTCAGGAGATGCCGATCCCACGAACTAACTGAGAAAGAAGTT
CACGGATTACGAGAACAGATATTCAGCACTAGAACGGACGTGCTGCGCATTCGCTTGGGCTGCTC
TGGCAGTACATGCTTTATCACACAACTTGGCTCATCGCTCGCATGGGCGCACTGAAATACATATT
CGAGAAAGCCTCTCTCTCTGGGGGGATAGCAAGGTGGCAAATGCTCCTGGCGGAATACTACATTG
TTTTCAAGACTCTCAAAGCCATCAAAGGCCAAGCACTGCCAGTGTGTTCAGGGGTTAAAGGTATC
TTCCTGACCACTATCCAAAGGATTCAGGCCTCTAAGACAGTCCCATCATTCTTGAGAGTCTTTAT
TTGTAGCTAAAGGCAGAGGGTCCGTTACAGACAGGTGCGGAGAACTAGTTAAGGTGACTTGGGAA
TAAGGGCTTGGAAGAGCAATGCGTAGAATCAGTTGTTGATTTCGC
Right flanking sequence: Indices 120673 -- 121172
GAGAGGAACGATTATCAGAAGCAGCTGAAGTCTGAGACACAAAGGCTGATTGCTGCTCACTGTGT
TGTGCAGCTTGTATGCGATGAAGACGCGATTCTTGGTTAAGGACCTTAGTCCGCAGCTCCTCAAA
CGATGGAACAGTCTTAGAGTCGGAGATGGTTGTAACAAAAGCTTCATATTCAAAGGGCTTTGTAG
TGAAAACTACTTTGGGGACATAGAAGAGAGTTGATAGCAGCCAAGGCATCAACCATAGACTTCAG
TTCCCGTAAATAGGCATCCATAGGCTTGTTACCTTTCCTGTTATTCTGAATATCGAACTTCAATT
TCATTTCTTTAGCCGTGGACTGATAAAAAAATCTTTGCTCTAAAGCCATCCAAACATCCATATAT
GTTTTGTTTTCATATTCTATTGTAGACCCGTCAACATGTCCACTGAGAGTGTCGCGTTCAACCAA
GAGCGAACACTTTGATCCGTTCTCACCCAAGCACTATAAGCGGGG
Found at i:129325 original size:46 final size:46
Alignment explanation
Indices: 129258--129395 Score: 276
Period size: 46 Copynumber: 3.0 Consensus size: 46
129248 GTCTAACGCT
129258 TGCCTCCGGTGGCTAACCTAGGTTGAGCTGAAAACTCCAAAACTAG
1 TGCCTCCGGTGGCTAACCTAGGTTGAGCTGAAAACTCCAAAACTAG
129304 TGCCTCCGGTGGCTAACCTAGGTTGAGCTGAAAACTCCAAAACTAG
1 TGCCTCCGGTGGCTAACCTAGGTTGAGCTGAAAACTCCAAAACTAG
129350 TGCCTCCGGTGGCTAACCTAGGTTGAGCTGAAAACTCCAAAACTAG
1 TGCCTCCGGTGGCTAACCTAGGTTGAGCTGAAAACTCCAAAACTAG
129396 GGTTCCAAAC
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 92 1.00
ACGTcount: A:0.28, C:0.26, G:0.24, T:0.22
Consensus pattern (46 bp):
TGCCTCCGGTGGCTAACCTAGGTTGAGCTGAAAACTCCAAAACTAG
Left flanking sequence: Indices 128758 -- 129257
CAAGATCGAAAAGAATGCATTGGATGGATGCCCGGGCATTGAGAAGGAAGGACGCTTTCAGAGGC
GAAAGGCCATGGGGAGATACCGTCTGTGATCCATGGATCTCCGATCGGGAAACCGTATCCAAGCT
CCGTGGCTAGTCTGCGCTCTTTGGACTTTTCAAACTTAGCGAACTGAAACATCTGAGTAGCTAAA
GGAAGGGAAATCAACCGAGACCCCGTTAGTAGCGGCGAGCGAGAGCGGATTGGGGCTTTGAAGAA
AAACAAAGACGAAGCTTCGTTCCTCAGCAAAGTGTTCATTTCTTTTTCGCCAGGTTTCATTCTCT
TTCTTGGATGATGGAAAAACCAGCAAGCTACGGCTTGAAAGCTTACCTTCTTCTCTTCTGGAGAA
AGGGCTTTCTTTATAGATGAAGACGTTGAGTAAGGGGGGCGGAGCTTGAAGAGCGAAGCGAGCTG
CGCTAGCCTATTACGTTTTTCAGCAGCAAGCTACGGTCTAACGCT
Right flanking sequence: Indices 129396 -- 129895
GGTTCCAAACCTTTCTCTAATAATCAGGTAAGCTTTCAAGCCCCTTGACTTTCTATTAGTTTAGT
CAAGGGCGCTGTGAACTGTAATTGTGAAAAGGTTGGAAGATCTGGCCAAAGAAGGTGATAGCCCT
GTAGATTCGTTCCCATGGTTCGATCCTTCCCAGTAAAACGCGGCGTGTTCGAATTCTGATCGCTT
TTACGCGAGAAAGGGGGACCACCCTCTAAGCCTAAGTATTCCTCAATGACCGATAGCGTACAAGT
ACCGTGAGGGAAAGGTGAAAAGAACCCTATTTAGGGAGTGCAATAGAGAACCTGAGATCCGATGC
GAACAATCAGTCGAAGGAGCGGAGCTTAGAGCCTTGACTTTCTATATTAGTCAAGCGCACTCACT
CTAACGGCGTACCTTTTGCATGATGGGTCAGCGAGGAAATGGGAACAGCGGCTTAAGCCATTAGG
TGTAGGCGCTTTCCAGAGGTGGAATCTTCTAGTTCTTCCTATTTG
Found at i:131147 original size:18 final size:18
Alignment explanation
Indices: 131107--131149 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
131097 ACCGCCCTGC
131107 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
131126 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
131143 CATAGTC
1 CATAGTC
131150 AACAAGGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 130607 -- 131106
AGGGCTGCCGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTACAGAACCATGCCTGTC
TGTTGGAGCGAATTGGATGATCGGGCCGAGGGCTGCCCCCTCTTCCCCTCACTCTCCTTTCCCTA
ATATGAACCTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGCCCGGTCGCCCTACGCGACTGGC
GCTTCAAAAGGCGAAACTCTCGTCGTAGTTTGGCGACCTAAGGGGCGGACACTTTTTGTTATCTA
AAGGCGAAGACTCGGAAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGGCTCCGGCTCC
GCGCACCTGCTGACACCTTTCGAAGCACTTTCTAGTGTGCGCTTTAGTTTTCGAATGTCTCGTTC
AGCGTCACGAGTCTACAAGCCTTTCTCATTTCAGTGCTCGCCCTTTGAATCGGGCCTTTAGTCTT
TTGATTAGAGTAGGGGTCGCGAGAGAGCAGAGCGTACCGCCCTGC
Right flanking sequence: Indices 131150 -- 131649
AACAAGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACC
GTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAA
GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAA
AGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACAC
GATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAAGTCGGAAGGAGAAGTGTTATAAGCTTTGA
ATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGC
ATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAA
ATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTA
Found at i:132785 original size:21 final size:21
Alignment explanation
Indices: 132759--132802 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
132749 ATATCTAGTT
132759 TGAATTATAAGACCCTCTTTA
1 TGAATTATAAGACCCTCTTTA
*
132780 TGAATTATAAGGCCCTCTTTA
1 TGAATTATAAGACCCTCTTTA
132801 TG
1 TG
132803 CTCTCAAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.39
Consensus pattern (21 bp):
TGAATTATAAGACCCTCTTTA
Left flanking sequence: Indices 132259 -- 132758
ACCTATGGTGTACCAGTTGTTAGCAATAGCAGCGCCGGGCAGCTAAGTTGGTATGGAAGAACTGC
TGCGCCGCGGGAAATCCTTCTCTATACAAGTTCTCGGACGAGGTTTTTGAACAGAACTTCGATAG
GCGAGAGGTGTAAGCACCGCGAGGTGTGAAGCGATCTCGTACTAAACGAAAGAACTTTCACTTTC
CATAACCAAAATGAAAGAAAGTAAACCTATTCCTGCAATTGCGGTCAGTCTCGCTACCTCTTTAG
TTGCCGCCCCCTACTTGCTCATTCGCAATGACTACCACAAGAAAGCCGCCCCCTATCTCTAAAGG
GGCTTATGCACTCCACGACTTTCTTATGTTATGGCGAAGACTGAATTTAGCTTCCAACCCTAGTC
AGCAAGCTTCAAAAGTCCTTTCTCCTTTCTTTTCCGAAACTCAAATAGAAAACTCTCCCCATGGG
ACCGGGTTTTGAGGTTGTCATACCACTTTCATCCGATATCTAGTT
Right flanking sequence: Indices 132803 -- 133302
CTCTCAAAGACCGGCTTTTACAGAACTGAGATTCCATAGGCCGAAACGAAGCCCTTTAAAGGTAG
AATTAGGAGTCGAAGCCATGCATTTAGCCCGATTGCTATTCGCCCTTTTTAGCACTAGACTGACA
TTCTCATTTCGCTTGTTCAGTTCAACGAAAGCCGGTACTAATCAAGCACAGTTTAGCCCTATGAT
TGAATTGCGATAGTTGGATTCCCTCTTCCTATAGCTATGACTGGCAACCCCTATAAGTCAGTTTT
GACTCCCTCTTTTAAGGTCGAGACTATCTAAAAATCAATATGGTCTAGCTAGTTCTCACTTCCGA
GCTCTAACTCCTTACTTTCTTTCCCACCGTAGAACTCCAATCGAAAGGGGAATCTCCCCTTGGTC
CGCTTTCTCTATCTGGGGTTCATTCTGTTCGTACACATCTGATCCTTCTTTCTCAACCTTCAACT
TCTTCCGATCCTCTTTAAGCAGGAAGTGCGATCTGAAGGCCTGGG
Found at i:159080 original size:17 final size:17
Alignment explanation
Indices: 159058--159091 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
159048 GGGATCCTTT
159058 CTTTCTATCTTGACGAA
1 CTTTCTATCTTGACGAA
159075 CTTTCTATCTTGACGAA
1 CTTTCTATCTTGACGAA
159092 GGCTGGAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.41
Consensus pattern (17 bp):
CTTTCTATCTTGACGAA
Left flanking sequence: Indices 158558 -- 159057
AATTCTTTCACTAGTCTCAGAAGCTCTTTGAGAAGCTGTTGAGAGTAAAGAGGAATGCCCTTTTC
CCTTTAGCATAGATAATCCATCTTTCTTATTCTTATATATAGCTTACTCGAAGGTTAGCCCCCTC
TGCTAGCCTTGAGGGAAGCGAAAGAAGTCAGGCAAGTGAAAGTGAAGTTGACTATAGCTTTTTGG
CAAGCGATCTCAACAAAGAAGCATAGCTCAGTGACGACTATCAATTTACTAAGAGAAGAAAGATC
GGATTGTAGGCTAGATTCAAGGTATGCCAGTTTCTTGATTCTACTCAACTTTCCAGATTGGCTTA
GTGTTACATCTATCAACTGACTGAGCTTCCTTAGCTGACTGGGCTTTCAGCGCTGAGTTTCAAGA
CAAAGCGAGTTACAAGACTCTGGGACTAAGAAGTTTCTCTTCATCACGGGGCGCATTCGTCTATC
GATCTTAGTCTTAGAGAAATGGATGGTAGTAAGGAGGGATCCTTT
Right flanking sequence: Indices 159092 -- 159591
GGCTGGAAATGACAAGGAATTGATAAATGCCACTAATCATCCAACTTTGAGATGAAGGACATGGG
TGAAGCTAGTCTATTCTTTTTTCTTTTCAATTCAGATAACCTTTATGCTTATAAATGAATCCGTA
AGAAGCTATATTCATCTTGACTTCGTGACCAATCTATCGGACATAGAAGACTTAGTGTGTTTTAC
AGCTTGAGTCCCATTACATCTGCATCATATCCTGTAGGCGAGGAAGGAAACTGACAGCTTGATGA
AGAACGTTAGTTAGATTCGATTTAGTCTTGAGACAAGCCCGACTGGATAAAGAGAGGAAAAAAAG
ACAAATCTTTCTATCTTAGTGCAACTGAGCCCTGACTTGAGATGAGATTGAGAAGGCGAAAAAAG
AGCTATAATTGCCTTACGCTGCTCTGAGATCGTAAAGCCGTAAATCAGTCATTCTATTGTCATCC
CGTCTCCTTCAGCAGATCTTGGAGGCCTGGAAGTCGTTGAGTTTT
Found at i:160539 original size:25 final size:25
Alignment explanation
Indices: 160511--160574 Score: 128
Period size: 25 Copynumber: 2.6 Consensus size: 25
160501 CAAACTATAG
160511 ACTAATGATAAAATAGATAGATTAT
1 ACTAATGATAAAATAGATAGATTAT
160536 ACTAATGATAAAATAGATAGATTAT
1 ACTAATGATAAAATAGATAGATTAT
160561 ACTAATGATAAAAT
1 ACTAATGATAAAAT
160575 CGATGAAAGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.53, C:0.05, G:0.11, T:0.31
Consensus pattern (25 bp):
ACTAATGATAAAATAGATAGATTAT
Left flanking sequence: Indices 160011 -- 160510
CAGTCTCATGCTTCTATAAGGCTTTTAGAGACTCCACCTATTGTGATCCAACAGCCTATACGTTC
AAGCTTTCAAGCCCGAGCTAGTCTTCTTATCACCTAGCTACTTCACAGTCTCCTTTCGCGTACTC
CTCTTCCTATCTTCTCTCTTCACGAGACCTGTACATAAAAAACAAAGGTCTAGGTAGCTCATTTC
CTTCTAAGAAGTCAGATCTCCTTCTTCCTATATTATAAAAAGAATGAATAAGAGCCTTTCTTAAC
TCTTGAATTGTGTAAGGCATTTAGGAGCGCTCTTTGAATCCAACTAGAAATATCATAAGAGAAGA
AAGCAACTTCACCGAAAGGGCAGGTCTTTCTTTTTATTACTGATCTTATCAAGTAGTGCTTCGAT
AAGCCACCGCCCAATAGAGCTTAGTCATGTGTAGATCGAAAAGGTCTCGCGAAGCTGGTCACCGG
TAGGTCTAAGAACGGATTGAAAGCTTGATAAGCTGCAAACTATAG
Right flanking sequence: Indices 160575 -- 161074
CGATGAAAGTGCAAATGATACGGGTTGGATCTTCAGTGAGAATGAATTGATTTCGCAGTGCTAGG
GCGTTCATTCCGTTTCTCTTATTCATCGCTCTTCTGATGCTTTTCTATCTTCTCTGTCTTTCGAT
AGGGGGAATCTCGTTTTTTATTGATGTACTTTCAAAAGTAGCGGGCTTCATAGGGGTGAAGGCCC
TCTCTTTGCTTTTTAGCAAGATGGGCTGCTCCTCCGCTCTGGCCTTCGTGATTGGCTGTGCTTTT
CGAGCACTCGTCACTACGGAAGCAAGCCCCTCTCTGGCGCATTGGATGCTTCCCGGACCTTCTCA
CCAGCCTCACGTGGCAGAAGAGGATTACCTGCGGGACCATCCTGTAGCGCACCGAAGCGCCCCTC
CTGTAGGTCTTGAGGTGATCAAACCGGTTATAGAAGACGGGCAGCGTTACGACGAACTTGAGGGT
CGCCTCAATCGGCACCTCTTGGAGAATAGTGATCAAATCAGTACA
Found at i:168126 original size:20 final size:20
Alignment explanation
Indices: 168101--168140 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
168091 TTTGAAGAAA
168101 GATGACTTCTATTTTAAGAT
1 GATGACTTCTATTTTAAGAT
168121 GATGACTTCTATTTTAAGAT
1 GATGACTTCTATTTTAAGAT
168141 ATTGAGTTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.10, G:0.15, T:0.45
Consensus pattern (20 bp):
GATGACTTCTATTTTAAGAT
Left flanking sequence: Indices 167601 -- 168100
GATCTGGCTTTGAAGCCTCCTTGAGTCCGGCTTAGCTTCAGGTACGAGTCAAGAACAGAAGAAGG
GGATCGCCACAATCAAGAAGCAAGCTAAAAGCTGTTGTTTAGATGACTTTATGTTATGAAACAAC
CCAGAAAAAAAGTAATGATTGGAGTAGCCCGCCCAGTAGAGGCTTTCTTAGCGAAAAAAGTATAT
TCATGGATGGATTAGGGGAAAGAGTCTTCACCTTACTTTCAAGTGTCAATCATTTTTATTGAACT
TTCTTTCAGGCTAGCTCTGGGCAGGGCGCATACACACGAACTTTGAGTCGGATCCGAGCTCCAGT
AGACAGCGAGACAGCCATTGTGGTAAACGGGGGCAAAGCAAGGGAAAGAGAGGTGAGTGACGCCA
AGGGGAATTCCAGCACGAAAGCAAGTGTTGTTATCACACGTCCGTCCTGTCTGATTGATTCACCT
TCGATTATTCAATCAAGGAAGCAGAGTCAACGGCCTTTGAAGAAA
Right flanking sequence: Indices 168141 -- 168640
ATTGAGTTGGACAGTCAAAAAGCCCAAAGGCCAAAAATAAGAGCAAAAACAGAGGAGATGTCTTC
CTCATAGGCCATTGACTATCTATCCCCGGAGTCTTTCTCTCCGTCAAAGGGACTCTCTCTTTCTT
GAACAAGCACGGCGCTATCAGGACAAAATCCTAGCAGAAGCAGAAAAAGAGGAAGAGAAAGAGGA
GCGAACAGCCACTATCACATCGTTAGATGAGCTTCAGTTGCGCCCCTTTGTGAACGAGGGGATCG
AAAGGCCAGCCAAAGGAAGTACGGCTGAGTTTCAAGACTACGAGACTAAGAGTTGGGACTAGCCG
CATGTCATCTTTCTCAGAGTCTGAGCCTGACACCTCTATTATTACATCAAACAACAATTGAATTG
GGATCAAAGAATTAAGGGATTGGATTTGTCCCCGTCTGTCTTGTGTTCAACGAAGGAAAGCGCCC
TTCCTTCTTCAGCTTGAAAGACATCTCAGGAAAGAGCTACTTCAA
Found at i:170131 original size:13 final size:13
Alignment explanation
Indices: 170113--170151 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
170103 AAGAAACAGC
170113 TTTTTTTCTTTTT
1 TTTTTTTCTTTTT
170126 TTTTTTTC--TTT
1 TTTTTTTCTTTTT
*
170137 TCTTTTTCTTTTT
1 TTTTTTTCTTTTT
170150 TT
1 TT
170152 CCATTTTGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
11 10 0.45
13 12 0.55
ACGTcount: A:0.00, C:0.10, G:0.00, T:0.90
Consensus pattern (13 bp):
TTTTTTTCTTTTT
Left flanking sequence: Indices 169613 -- 170112
TCAAACCAGAGACCAAAGCAAGGCTCGACAAAACAGAAAGTATCATAGTACGTCGTCCTTCCCTG
TTCTAGTGCTTGCATACCCATAAGGATACACTTATATACCCGAATTTCGCCGGATTGTAGGAATG
ATAACTGATCATTTGATCAGAAAACTAAGGGAGCCTGGGCATAAAGAAACTGGAAAAAGGTTTCT
AAGCAAAGTTGCTGAGTATAGGTCTCGTGTGCTTGCTATAGAAAGTACATATACGAGTCACGAGT
AAGAGGAAGTGGTAACGGTCGATGGATGTTCATATTTGAGTATTTGCTGACGGAATGCCTCACAT
CAAGGTGACAGGATTCGAACCTATGGCCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGC
TACACCTCGTCTCACCACCCCGGAGCATATAGATCCACCCGATCGATGAACACTCAAACCGAACT
CACCCATCCTTTTGGGCACAGGGACGCGAGAACCTAAGAAACAGC
Right flanking sequence: Indices 170152 -- 170651
CCATTTTGATAGATTTTATATATTTTCTATTTTATATATCTATTTTGAATATGCCTCCAGCAAGA
TAGGGCGACGCAAAAAAGCCGTATAGTGCAGGAGCGCTCACATTTTTTGGCTTACTCTTGCACTT
GAATTTCAAAATCCGGCCTTTGGACCCTTGGCCCGCTTAGAAGTGGATTCGAACCACTGACACAA
GGATTTTCAGTCCTTTGCTCTAACCAGCTGAGCTACCTGAACCACTTTCCTAAAAGATGTTTTCT
TCATCGAATAGCGCCCTACCTTACCACTTGACTAGTAAAAAGCCCTTGTACTAAAAATAGAATAA
TAATGAATAATAAGAAAGAATAGAATCTATATATAGGCCTTTTTCGCTTCTTCGTCAAGCTTTCG
AGCAGCTCTTTCAACTGCCGCCTAATCCCCCTCAAGAACCGAGAGCCGCCCAGCCCCTGGACAGC
CGGAGGGAGCTTGCTTATAGAAAGAAGATAGGCCGATCAAACAAA
Found at i:170139 original size:18 final size:19
Alignment explanation
Indices: 170116--170152 Score: 67
Period size: 18 Copynumber: 2.0 Consensus size: 19
170106 AAACAGCTTT
170116 TTTTCTTTTT-TTTTTTTC
1 TTTTCTTTTTCTTTTTTTC
170134 TTTTCTTTTTCTTTTTTTC
1 TTTTCTTTTTCTTTTTTTC
170153 CATTTTGATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (19 bp):
TTTTCTTTTTCTTTTTTTC
Left flanking sequence: Indices 169616 -- 170115
AACCAGAGACCAAAGCAAGGCTCGACAAAACAGAAAGTATCATAGTACGTCGTCCTTCCCTGTTC
TAGTGCTTGCATACCCATAAGGATACACTTATATACCCGAATTTCGCCGGATTGTAGGAATGATA
ACTGATCATTTGATCAGAAAACTAAGGGAGCCTGGGCATAAAGAAACTGGAAAAAGGTTTCTAAG
CAAAGTTGCTGAGTATAGGTCTCGTGTGCTTGCTATAGAAAGTACATATACGAGTCACGAGTAAG
AGGAAGTGGTAACGGTCGATGGATGTTCATATTTGAGTATTTGCTGACGGAATGCCTCACATCAA
GGTGACAGGATTCGAACCTATGGCCCTCTGTACCCAAAACAGATGCGCTGACCAGACTGCGCTAC
ACCTCGTCTCACCACCCCGGAGCATATAGATCCACCCGATCGATGAACACTCAAACCGAACTCAC
CCATCCTTTTGGGCACAGGGACGCGAGAACCTAAGAAACAGCTTT
Right flanking sequence: Indices 170153 -- 170652
CATTTTGATAGATTTTATATATTTTCTATTTTATATATCTATTTTGAATATGCCTCCAGCAAGAT
AGGGCGACGCAAAAAAGCCGTATAGTGCAGGAGCGCTCACATTTTTTGGCTTACTCTTGCACTTG
AATTTCAAAATCCGGCCTTTGGACCCTTGGCCCGCTTAGAAGTGGATTCGAACCACTGACACAAG
GATTTTCAGTCCTTTGCTCTAACCAGCTGAGCTACCTGAACCACTTTCCTAAAAGATGTTTTCTT
CATCGAATAGCGCCCTACCTTACCACTTGACTAGTAAAAAGCCCTTGTACTAAAAATAGAATAAT
AATGAATAATAAGAAAGAATAGAATCTATATATAGGCCTTTTTCGCTTCTTCGTCAAGCTTTCGA
GCAGCTCTTTCAACTGCCGCCTAATCCCCCTCAAGAACCGAGAGCCGCCCAGCCCCTGGACAGCC
GGAGGGAGCTTGCTTATAGAAAGAAGATAGGCCGATCAAACAAAA
Found at i:184681 original size:12 final size:13
Alignment explanation
Indices: 184664--184693 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
184654 GGAACCAAGT
184664 AAAAAAAGAAA-A
1 AAAAAAAGAAAGA
184676 AAAAAAAGAAAGA
1 AAAAAAAGAAAGA
184689 AAAAA
1 AAAAA
184694 TGCCTGCCCG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.65
13 6 0.35
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (13 bp):
AAAAAAAGAAAGA
Left flanking sequence: Indices 184164 -- 184663
CCTTACGTTCTTGAGTCACGATCGATGGAAAATCCTCTAGCTTGGCCAAATTACTTTCATCGTGT
AAGCACCAATGCTCTTGCTCAAGCCGTTAATGTGGTCGAAGAGTCTTTCCCTTCAGGCATTAAGA
ACTCAAGCCGGAAGAAGAAAAAGAGGCGCGCACCCCCTCACACAACTACTTATAGGACCAGTCGA
AAAGAAAATGCACCTTAAACAGAAGGGGACACTAGCCCAGTTAAGAAAAGCCACCCTAGCAGAAT
GGGGAAAGGCATACTACCTACCTCTCCTCTGACTCCATTTACCTTAGAATAGGCGGCGAAACCGC
CACAACATATATCTTGTTCCGTGCTATTGAGAGATAGGGGACAAAACGCCCTTAGACCTATACCG
GCGGGGAGCAGCGGATACACTTCAGAGATAGGAAAAAGGTTCGAAGAAAAAGGATGCTAAATGGT
ATGGTAAAGTAAACCCTTGTAGGACCACCGAGGCTGGAACCAAGT
Right flanking sequence: Indices 184694 -- 185193
TGCCTGCCCGCGGAAAAGCAGTTGGGCATTCTCCATGAAAGCAGAGGCCCTCGCTCGAAGATAAA
ACAGAATGAAAAGCACAGCCGGCGGACCACGAGAGGTCATTTTTTACGTAGGAATAGCCTAGAGG
GAATCGAATACTCGACTTAGACACAGGGGATAGCCGGACGAGGGGACCTACGATTGAAATTCTGT
TAAGGAAATGGCCAGACCATATGTCAATGGCGGCACATAAGCTCGCTCGCTCACACCTTTATTCG
ATTCGAAGTACCTTCCACGATTGGACCACTTTTTAGGAATTGAATCCTTTTCAGACAAGCAGACC
GGACAGCTAGGACGGAATTGACCACATCGAAAGCAGACCAAGAGCATTTCCCTAAAAGCGGGGCT
TCCCTATTAGACTGCCCCTCAAGAAGGAAGAAGCAATCTGATGCCTCTCTTTCTCCTTAGTCTAG
AGTGGAGGTTCAAGATGAGAAAAAGCGGATTGGGAGTTATGCCAA
Found at i:184689 original size:16 final size:15
Alignment explanation
Indices: 184664--184693 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
184654 GGAACCAAGT
184664 AAAAAAAGAAAAAAA
1 AAAAAAAGAAAAAAA
184679 AAAAGAAAGAAAAAA
1 AAAA-AAAGAAAAAA
184694 TGCCTGCCCG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (15 bp):
AAAAAAAGAAAAAAA
Left flanking sequence: Indices 184164 -- 184663
CCTTACGTTCTTGAGTCACGATCGATGGAAAATCCTCTAGCTTGGCCAAATTACTTTCATCGTGT
AAGCACCAATGCTCTTGCTCAAGCCGTTAATGTGGTCGAAGAGTCTTTCCCTTCAGGCATTAAGA
ACTCAAGCCGGAAGAAGAAAAAGAGGCGCGCACCCCCTCACACAACTACTTATAGGACCAGTCGA
AAAGAAAATGCACCTTAAACAGAAGGGGACACTAGCCCAGTTAAGAAAAGCCACCCTAGCAGAAT
GGGGAAAGGCATACTACCTACCTCTCCTCTGACTCCATTTACCTTAGAATAGGCGGCGAAACCGC
CACAACATATATCTTGTTCCGTGCTATTGAGAGATAGGGGACAAAACGCCCTTAGACCTATACCG
GCGGGGAGCAGCGGATACACTTCAGAGATAGGAAAAAGGTTCGAAGAAAAAGGATGCTAAATGGT
ATGGTAAAGTAAACCCTTGTAGGACCACCGAGGCTGGAACCAAGT
Right flanking sequence: Indices 184694 -- 185193
TGCCTGCCCGCGGAAAAGCAGTTGGGCATTCTCCATGAAAGCAGAGGCCCTCGCTCGAAGATAAA
ACAGAATGAAAAGCACAGCCGGCGGACCACGAGAGGTCATTTTTTACGTAGGAATAGCCTAGAGG
GAATCGAATACTCGACTTAGACACAGGGGATAGCCGGACGAGGGGACCTACGATTGAAATTCTGT
TAAGGAAATGGCCAGACCATATGTCAATGGCGGCACATAAGCTCGCTCGCTCACACCTTTATTCG
ATTCGAAGTACCTTCCACGATTGGACCACTTTTTAGGAATTGAATCCTTTTCAGACAAGCAGACC
GGACAGCTAGGACGGAATTGACCACATCGAAAGCAGACCAAGAGCATTTCCCTAAAAGCGGGGCT
TCCCTATTAGACTGCCCCTCAAGAAGGAAGAAGCAATCTGATGCCTCTCTTTCTCCTTAGTCTAG
AGTGGAGGTTCAAGATGAGAAAAAGCGGATTGGGAGTTATGCCAA
Found at i:186306 original size:31 final size:31
Alignment explanation
Indices: 186230--186309 Score: 79
Period size: 31 Copynumber: 2.6 Consensus size: 31
186220 AATATAAGTT
* *
186230 AGTAGCTTTCACATCCTTCCTATATATAGGA
1 AGTAGCTTTCGCATCCTTACTATATATAGGA
*** * * **
186261 AGTAGCTAAAGCATCCTTACTCTCTATAGTC
1 AGTAGCTTTCGCATCCTTACTATATATAGGA
186292 AGTAGCTTTCGCATCCTT
1 AGTAGCTTTCGCATCCTT
186310 TTCTTATCTA
Statistics
Matches: 37, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.26, C:0.25, G:0.14, T:0.35
Consensus pattern (31 bp):
AGTAGCTTTCGCATCCTTACTATATATAGGA
Left flanking sequence: Indices 185730 -- 186229
TCAAATACATGATCGGAGATAGGTCCGGCAATCGAAGAGACAAGCAATCATAGCAGGCACGAAGC
ACCAGAAAAGGGGTGGAGAACTTCTTTCGTCGAAAGTGCCAGAGGGGCCAACGCCTACCATATGG
GAGATCGACCTGTGAGGCAAAGGTGCGGCAAAAAAAGGTCTGGTACCAGCCAAGGTGGAGAATTC
CCCCATTTGCTTGCTTTCTATATTCTAATGATAGCCCGCCACCTCCCCGGTAGGGCATCTCCTCT
TTGACTCCTCTGATCTTGTACCTAAGGACTATGCTTTACTTTTCCATTAACTTCCTCATATCACG
TCTTACTGATATCTTATAGGTAATAGAGTCTCAAAGCAGGGTCCCCCCAATGACAGCCTTCTTGT
CTACTCACTTTTGATACTAGTACACCTTTGCGTGGTTTCTGTCTTCACTTTATGGCAATTCTCTC
GATCTCTGATAAGTCAGCTAAAGGAAGCAAACTCTAATATAAGTT
Right flanking sequence: Indices 186310 -- 186809
TTCTTATCTATGTTCTTACCTCAAGTTTCTTTCCTTAGGCAGGTTTCACACTAAAGTTGAGAAAA
GGCATAATAGAAAAGAAGTGAAAAGAAAAAGAAGTGGCGCTATAGAGTCTGATTCCCTATAATAA
ATAGAAGTGGAGGGGTTGCTTGCTATTCCCATATCAATCGATGAAAGAGAACTAGGGAGTGGTTA
GAAGAAGCTATTTAGGTAACCTTTGCTTAGAGGACCGGCTATACTACTAGTGACTTAGATCTTGT
GAGAAAGCAGAAAGTCGGGTGCCCGCAGCTACTTTAAATGTGAAAGGAGTGAAGTTAGCCTATCA
GTAAGCACTCCTTCTACTCTTTAGGAATCCCCTGGAAATAGAATGATGAAGTGATGGGTAAGCTC
AAGTAATCCCTACCTTCCCTAGAGAACTGAGAAGAGATAGAAGTCAGATTAGCTCTCCAAAATGA
GTAGAGAAGAAAGTCTAGCTTCCCAGGGAGTAAAGACGGGAAAGC
Found at i:187079 original size:45 final size:45
Alignment explanation
Indices: 187015--187140 Score: 189
Period size: 45 Copynumber: 2.8 Consensus size: 45
187005 CTTCTTTATA
187015 GGATTCTCGTCTGATTGAACAAGAGCGTATGCACCTTAAAAAAAG
1 GGATTCTCGTCTGATTGAACAAGAGCGTATGCACCTTAAAAAAAG
187060 GGATTCTCGTCTGATTGAACAAGAGCGTATGCACCTTAAAAAAAG
1 GGATTCTCGTCTGATTGAACAAGAGCGTATGCACCTTAAAAAAAG
*** * * * *
187105 GGAAGATCGTATGATTGCACGAGATCGTATGCACCT
1 GGATTCTCGTCTGATTGAACAAGAGCGTATGCACCT
187141 CCTTTTCTCC
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 74 1.00
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (45 bp):
GGATTCTCGTCTGATTGAACAAGAGCGTATGCACCTTAAAAAAAG
Left flanking sequence: Indices 186515 -- 187014
TTTAGGTAACCTTTGCTTAGAGGACCGGCTATACTACTAGTGACTTAGATCTTGTGAGAAAGCAG
AAAGTCGGGTGCCCGCAGCTACTTTAAATGTGAAAGGAGTGAAGTTAGCCTATCAGTAAGCACTC
CTTCTACTCTTTAGGAATCCCCTGGAAATAGAATGATGAAGTGATGGGTAAGCTCAAGTAATCCC
TACCTTCCCTAGAGAACTGAGAAGAGATAGAAGTCAGATTAGCTCTCCAAAATGAGTAGAGAAGA
AAGTCTAGCTTCCCAGGGAGTAAAGACGGGAAAGCCTTACCTCTTACGAGATAGAAAGAACCTCA
GAGAACGGAAAGAGCCAAGGTCGTAAAGACAAAGGCAGAAAAGCCTAGGTATAGGTAGCGAAAGT
CAAGGTACGAGACACCAAGGAGTTAGAAAATAATAGAACCTGTAACGGAAACAGAGTTTTAGCCG
GCTCATTAGAGCAAGTGAAATATGCGTCAAATTGGCTTCTTTATA
Right flanking sequence: Indices 187141 -- 187640
CCTTTTCTCCTTTATTCCGGGCAATAGATAAGTAAGTGAGTGCCCCGTGTACTTTCCCTATCAAT
TTTCATGTACTAGTTTTTATTGTATAGAGAAGAAATCTCGGTTCGAAGGTAGGTAGCTTCCTTTC
ACAAGCCTGTTTTCACTTCCTTATAGAAAGTAGGCTGCTACCGAACTCATTAGCAAGCAAACGGC
ATCGCCCTATCTCAAGCAGCTCACTACTCACTAAAGTCTATGTGAGAAACCAAGCTATTTCACTC
CTGTGGGATTCAAACCCACCGCATAGGCAGCTTTCGAATAGGCCTTGATTACACCGAGTAAGGAT
GCGAAAGCAACTGACTAAATATAGTCTGGAGCTGGACACCATCTTAAGTAATAGAACTCCCAGTT
GTGTTACACGAACCTTTCTTTCTCTTCTGAGTTCTCTTAGATGGGAAATGAAAACGATTAGCCCC
ACACGAGGTTTGTGAATTAGTGTACGTAGTGCAATCAATGCTCTG
Found at i:189665 original size:21 final size:21
Alignment explanation
Indices: 189641--189687 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
189631 TTCCTTCCCT
189641 TCTTCGGCGGATTCCGCTGCC
1 TCTTCGGCGGATTCCGCTGCC
*
189662 TCTTCGGCGGCTTCCGCTGCC
1 TCTTCGGCGGATTCCGCTGCC
189683 TCTTC
1 TCTTC
189688 AACAGCGTCC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.02, C:0.40, G:0.26, T:0.32
Consensus pattern (21 bp):
TCTTCGGCGGATTCCGCTGCC
Left flanking sequence: Indices 189141 -- 189640
TCCTAATGTTTTGGGGCATCCCGACAATTATATACCTGCTAATCCGATGCCCACCCCGCCTCATA
TTGTACCGGAATGGTATTTCCTACCGATCCATGCCATTCTTCGTAGTATACCTGACAAAGCGGGA
GGTGTAGCCGCAATAGCACCAGTTTTTATATGTCTGTTGGCTTTACCTTTTTTTAAAAGTATGTA
TGTACGTAGTTCAAGTTTTCGCCCGATTCACCAAGGAATATTTTGGTTGCTTTTGGCGGATCGCT
TACTACTAGGTTGGATCGGATGTCAACCTGTGGAGGCACCATTTGTGACTATTGGACAAATCTCT
CCTTTTGTTTTCTTCTTGTTCTTTGCCATAACGCCCATTCTGGGACGAGTTGGAAGAGGAATTCC
TAATTTTTACACAGAAAATGAAAACAGATCAAATGATTACCAGTAGACAACTCGTACTACGAAGG
AGTGAGATGGACGCTCTCATGGAGACGGATTGGGATTCCTTCCCT
Right flanking sequence: Indices 189688 -- 190187
AACAGCGTCCGACGCGCGAAGCGCTCCACTTGACTTTTTCCAATTATACCAAGAAATAGGTAATG
AGTGCGGCAGGCTTTTGCGTGAAGCCGGGATGGTATTACCACCGGGCTTGACCATGCCTGAAGCT
ATTCAGAGAACCTTTGGGGATGAAGCGGTTCGGTTATTATATGGGAATAACATTATTCATTTTAA
GCCCGGCTTTCTTAGGGAAACCTACTACGAGATTCTGATAAATAGCATTGATAGTTTGAGATTCC
AGGAGCTACTGTATTTGCTGGATGAGTTCAGCAAGGTAGCGTCGTAGTTTAGTAGCTGCTGAACT
AACGAAAGAAAAATGGAACCAGATACATTCTTAAAGGAATGCGCTTTGCCTTACACAATATAAAA
AAGAAAAAGAGAATAAAAATAGAAAGATGAAGGAACAAAGTTGACACAATCCCTTTCTTTCCGTT
GGTCAACAACCAACAAAACAAAATCGTTTAGTTCTTCACTACTCG
Found at i:189698 original size:21 final size:21
Alignment explanation
Indices: 189653--189698 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
189643 TTCGGCGGAT
** * *
189653 TCCGCTGCCTCTTCGGCGGCT
1 TCCGCTGCCTCTTCAACAGCG
189674 TCCGCTGCCTCTTCAACAGCG
1 TCCGCTGCCTCTTCAACAGCG
189695 TCCG
1 TCCG
189699 ACGCGCGAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.07, C:0.43, G:0.24, T:0.26
Consensus pattern (21 bp):
TCCGCTGCCTCTTCAACAGCG
Left flanking sequence: Indices 189153 -- 189652
GGGGCATCCCGACAATTATATACCTGCTAATCCGATGCCCACCCCGCCTCATATTGTACCGGAAT
GGTATTTCCTACCGATCCATGCCATTCTTCGTAGTATACCTGACAAAGCGGGAGGTGTAGCCGCA
ATAGCACCAGTTTTTATATGTCTGTTGGCTTTACCTTTTTTTAAAAGTATGTATGTACGTAGTTC
AAGTTTTCGCCCGATTCACCAAGGAATATTTTGGTTGCTTTTGGCGGATCGCTTACTACTAGGTT
GGATCGGATGTCAACCTGTGGAGGCACCATTTGTGACTATTGGACAAATCTCTCCTTTTGTTTTC
TTCTTGTTCTTTGCCATAACGCCCATTCTGGGACGAGTTGGAAGAGGAATTCCTAATTTTTACAC
AGAAAATGAAAACAGATCAAATGATTACCAGTAGACAACTCGTACTACGAAGGAGTGAGATGGAC
GCTCTCATGGAGACGGATTGGGATTCCTTCCCTTCTTCGGCGGAT
Right flanking sequence: Indices 189699 -- 190198
ACGCGCGAAGCGCTCCACTTGACTTTTTCCAATTATACCAAGAAATAGGTAATGAGTGCGGCAGG
CTTTTGCGTGAAGCCGGGATGGTATTACCACCGGGCTTGACCATGCCTGAAGCTATTCAGAGAAC
CTTTGGGGATGAAGCGGTTCGGTTATTATATGGGAATAACATTATTCATTTTAAGCCCGGCTTTC
TTAGGGAAACCTACTACGAGATTCTGATAAATAGCATTGATAGTTTGAGATTCCAGGAGCTACTG
TATTTGCTGGATGAGTTCAGCAAGGTAGCGTCGTAGTTTAGTAGCTGCTGAACTAACGAAAGAAA
AATGGAACCAGATACATTCTTAAAGGAATGCGCTTTGCCTTACACAATATAAAAAAGAAAAAGAG
AATAAAAATAGAAAGATGAAGGAACAAAGTTGACACAATCCCTTTCTTTCCGTTGGTCAACAACC
AACAAAACAAAATCGTTTAGTTCTTCACTACTCGTACAGGAAGGC
Found at i:198706 original size:16 final size:16
Alignment explanation
Indices: 198681--198720 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
198671 TACATCGTAG
198681 CGCA-AAAGAGCATCC
1 CGCAGAAAGAGCATCC
*
198696 CGCAGAAAGAGGATCC
1 CGCAGAAAGAGCATCC
198712 CGCAGAAAG
1 CGCAGAAAG
198721 TTTCCACCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 4 0.17
16 19 0.83
ACGTcount: A:0.40, C:0.28, G:0.28, T:0.05
Consensus pattern (16 bp):
CGCAGAAAGAGCATCC
Left flanking sequence: Indices 198181 -- 198680
GCTAAAATTCCAGCTTCAAGCGTTCTGCAGCTCATAATCATATTATGGAAAATGAGGCGTGGGAA
AACGGCACCGATTCTGTCCAATAACACAAAAAACTTATTTTTAAGTCCTTCGGCCTTCGCAAACA
AACAGCCCGGCCAACCCAAGTAATCCCCCATAACATCAATCAGTACCGCAAAAGGCTCAAAATCT
AAGTCTCCAGCAGCTGCGGAGCGGGGGATAAAGGAACAGCAGGATTACAACATTGCACAGGATCA
ATCAGAATGCGGGAGCGCAGAGCCTTTAAGAGATAGGGGGTGCGGGAGCATAATACTAAAGACTC
AAGATTCCCCCCGGTTTTTCATGCAGATTTGACCATGGTGTGCACCCCCCTTAACTTAACCCCTA
TTATGTAAGGGGGACCTTCGGCGGGATAAAAGAGAGTGCGGGAAAAGCAGCTACAGATACAGGAC
AAAAGAAGGAGTGGCGCACTTAAAGAGTAAAAAAGTACATCGTAG
Right flanking sequence: Indices 198721 -- 199220
TTTCCACCTTTCTGTCCAGCTGAAAAATGGAATGCAATAGTCTAAGATGCTTAATAGCTCCAACA
AGCGCGAAAGCCGTTGCTTCTTGCTTTCGAGCCCAAGCCTACGTTTGCTTAGTAAGGTTGCTTCT
TTTTATATCTCCTCAAAAAAGTAAAGGCGCGTTAGCGCTTTTTATTTATTTTCTTTTTCAATAAG
GGGCGGAGCTTGAAGAAGCGAGTCTATCAGAGAAAAAAGTGCTAGTTGTAGCGCGCTAGCGCACA
TTTGACTAAAAACATGGAAAGTCAAGGCTCTGGGCAACGAGTGGGAGGGAGCCTTGACTTGAAGC
ATTGTACAAGTGCTTAAGGCTCCTTCGGGCCATGGGCACAACTATCATATAAGGCAAGGCTTGGA
AGCAAGCTACCAGCGCCTATCGGCGGGAACTGGGCTTGTCTTGGTTAGTAGTGCCCGCCCATTCT
GTCTCGCCTGCCCGCCGACCCATGAATTCTTCAGAGCGGGCCGGC
Found at i:204773 original size:15 final size:14
Alignment explanation
Indices: 204753--204783 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
204743 TGCTTTATAT
204753 ATATATATAAAATAA
1 ATATATATAAAA-AA
204768 ATATATATAAAAAA
1 ATATATATAAAAAA
204782 AT
1 AT
204784 TGGATTCTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (14 bp):
ATATATATAAAAAA
Left flanking sequence: Indices 204253 -- 204752
CTAATAGAGTCGTTAGTTCAGCAGCTCTCGGAGAGAATTCCATGATTCTACTGATTTTGGATATA
AGGGGGAATACCGCTTTCAATTTCAAAGAGCTCTATTTCCGCTATTCTTATAGATCAGATTCGAG
CTTGTACTACTAGAACTAGGAGTTGAGATAGCGCGCGGAACACCAACACAATCCTTTGTTAAATG
TCTGCGAGCTCCTTCTTCTTTCGTGAAAGCATACGAGTCGTTATGTTAAGCATCTAATCCTAGTC
TTTATGTTCTCTGTGTTAGAGGAGTTAGATGTCCCTCATGTTGAACAGTCTGACATCAAGTTGTT
AGGACCTGAGTCGCTATGCGAACACTTAACACAAGACTGAAATCAAGCTAGAGTGGTTTTTGAAT
CAGTCATCAAGGATCTTAGCCAAACGGTGACCGGCTACGTAAGCACTTTGGGCGCAGGTTTCTCG
ATCGGACTTGACGAATTGTCATAAAGACATCACTCTGCTTTATAT
Right flanking sequence: Indices 204784 -- 205283
TGGATTCTAAAATAAGATTCAATGAATTAGAAGCATTCGCAGTTTTCAGTTCGTTTGTCATCATC
TTTTCTCCTCATCGCTAGCCTGTTTCCAAGAGGGGGAAGAGAAGGTCTTTCAAGTTGGAGAGCAT
ATGAGATTTCTCCATCGCAGCATTGCATCTATCGACTGAACAAAGTAACTTTCGAAGTGGACTGG
GAAGGAATGCGAATAGGTATTTCAATTGTTGGACTAAATGAATAGGCAAGGAAGGCAAGGCACTT
GACTGAAAGGTCCTACCCGACTCATTCTTAGGACAGGCTTAGCTCTAGCTATCTAAAATGAAGAA
ATTGTACAAGGGATCAATCCTATTTCACAAAGTAACTTCTCAAAGGTCGAAGGCGTAGTATCGAT
TACTTGTGTTGGACTACCTTTATAGGATAGATCTGATATACTGTTAGGTTTTGGTTGGACTGCTT
GGTACGGAATTCACTGAGATTGACTTTAGATATCGCATTTCCGGT
Found at i:208575 original size:28 final size:22
Alignment explanation
Indices: 208498--208554 Score: 105
Period size: 22 Copynumber: 2.5 Consensus size: 22
208488 GGAGAAGTGA
208498 TACCTGTCGACCGTGAGGGAGAC
1 TACC-GTCGACCGTGAGGGAGAC
208521 TACCGTCGACCGTGAGGGAGAC
1 TACCGTCGACCGTGAGGGAGAC
208543 TACCGTCGACCG
1 TACCGTCGACCG
208555 ACCTTAGGAG
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 30 0.88
23 4 0.12
ACGTcount: A:0.21, C:0.30, G:0.33, T:0.16
Consensus pattern (22 bp):
TACCGTCGACCGTGAGGGAGAC
Left flanking sequence: Indices 207998 -- 208497
CGTGAACCAGAAAGAATGAGCCGCTTCAATACCAAAAGGAAGAAATCAGCACTTGCTTCTTGAGC
TGGTACAACAACTCCAGCAAGAAGGATTAGCCGATTAGAAGGCATGGCCAAGGGTACTACAAGCG
GAACCCCAGTCCCAAGCTATAGGACGACAGATGAATTAGGCGCTGACTCCAAGACTGATACGATA
GGCTTTGAGTCATCAGTTTGATCTCCTAGATGAGAGGGCTATGGGTATAGACCCGAAAGCACCTT
CACTGGCCATGGACTACTCAATCAATCGGACAACCGCTTCACTACTTCCAAGACTGAAAATCCAA
TGATAGAAGAATCGACTGCAGCAAAACTTCCTAAACTAGACTAGAATAATCTTTCGTAGCAGTCA
AGGATGAGTTCGATCCATTAGGTTCTTCGATTTGTTCAGAGGGAGTGGGAAAGCTACATAAATTC
TTTGGAAAAGCCTGCTTGGAAGCTCTCTTTTAGTCGGAGAAGTGA
Right flanking sequence: Indices 208555 -- 209054
ACCTTAGGAGGGAGACTACCGCCCCTGAGGGGCTTGTTGCTAGAGGCATCCCCTCAAATGAGATT
TATCAACTCTACAACAGCTCCGGTTTTAGCAATAAGAGCCCGCCTTCCGGGTCCTATATTCTAGT
TACTAGCTTCAAAGGAACTACTAAAAGAAGGAGTCAAAGCATCGGATAGTGCTACCTACGAGTGA
GTCACCCGCCTGGTTACCTGTCCTTATGAAGGAAGGTGCGCATGAAAGTCTTTACGGAAGACCAT
CAAATTACTGATTAGGAAGGTATTTAAGGAATGAACTTCTATTACAGGGATTCTTTTATTAAGAC
CTTTCGGATAGATAGCCCTATTGAATGAAGGTTGAACACCAACCCGCCTGGAAAGCTAAGAGTCG
GCAAAGACCTAGCTGTCGAGGAATGAAAGAAGTCGCTTTCTAGGAGAAGGAGTACGAGGAAGTCA
AGTCACAGGCAAGCAACCAACAGGCTAAGAGCTATCTCCCAACCT
Found at i:222439 original size:31 final size:31
Alignment explanation
Indices: 222401--222462 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
222391 ATATGTCATA
222401 CCTTCTTTCGAATCAATACCATTCCATGAGT
1 CCTTCTTTCGAATCAATACCATTCCATGAGT
222432 CCTTCTTTCGAATCAATACCATTCCATGAGT
1 CCTTCTTTCGAATCAATACCATTCCATGAGT
222463 GTCCTGTGGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.26, C:0.29, G:0.10, T:0.35
Consensus pattern (31 bp):
CCTTCTTTCGAATCAATACCATTCCATGAGT
Left flanking sequence: Indices 221901 -- 222400
AATATGGGCACATACTAGAAACTGAGCCAGGCACATCCCTGTTTTCTTGTCTTAGCACTTCAAAT
TAGCTGCACCCTTCCAAGTTAGTCCAGGAGCCCTCTCAGATGCAGGTCTTTTCAAAGTGCAAAGT
TTCAGTGATCACTTATGCAATTGTGAGTTGCTGTTTTGAGTTTCCTGCTTTTCGGGCTGTCCTCT
TTTAGGGAAGGGAGCGTGCCCTAGTAGCATGAGACGACAGCCTTGCATAGGAGTAGTTCTGACTC
CGAGAATAGAATCTTATCCCCGCCGACTAAGCCCGGACTCTTTCGCATCGCGCTAATTCAGTGCC
AGCCGTTGGTGAAAGACCTGCATGGAGCCGAGCCCTTCTCACCTACCTGCTTTGGGGAGAGTTTG
ACCCGGACAAAACTAGTGGGTGTCGCCTCCTCGAAGCAGCTCCCTCTCGCCCCGATTGATGAAGT
CCCTGATTGAGAACACCATTGCTAACTTATGTATAATATGTCATA
Right flanking sequence: Indices 222463 -- 222962
GTCCTGTGGGTCTGATCAAGGCCAGTAGCTACGCCCTGCACTTTTGATAACCGGTTAGATATCCT
AGCACTTTAGAGTTTGAGAAGGGTAAAGAAAATCGTCCTTTCTTTTGAGATCTGGACTCCTGAGG
GAGGGTAATTTGATGCTAGCGAACGTTGTGGGTAACAAGGCGAATGAGTCAGTATCTAGTAACGG
CTAGGATGCCAAGCGATGCAATGTAAAGAAGAAGAAGGTTTGGATGACCTCTGGGGGAATAGCAC
GCCCACAGAACGATATCGTGGAAATGCTGCACGGACCCGTATATATAGGAACAGAAACAAAATGA
CTTTTGGAGTTTGACGGTCCGTCCTCAAACCCACCTGTTGCCGATCCGACGTGGTAAAAGCAGAT
CGTGATTGATTGCTCTTAGAACACGCCGATACGGCACGCTCTCCCGGGTTCCAAGTTCTCTAATT
TGAGTGACGTACGATTCATACGTACGCACACTCAAAAGATGCCCT
Found at i:233413 original size:18 final size:18
Alignment explanation
Indices: 233381--233420 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
233371 CTGGTCGAAT
*
233381 TCAAGGATTCCAATCAGC
1 TCAAGGATTACAATCAGC
* *
233399 TCAAGGATTAGAATCAGT
1 TCAAGGATTACAATCAGC
233417 TCAA
1 TCAA
233421 CACTGCAGTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (18 bp):
TCAAGGATTACAATCAGC
Left flanking sequence: Indices 232881 -- 233380
TTGCCTGTAGGCTGATCTCCATATGGATGCGCGAGTGAAGGCCTTTCCTCAACTTCAACTGTTTT
GTTTGGGACGCTCCGGCACATTAAATGCGAGAAGTGCGCTATTTCCCAATCCAAATAGTCAAAAC
TCACGTAATCGTAATAAGAAGAGTTTCTCCCTTTTTCTTCTGTAAAATCCGAAGCAGCTACGCCT
ATTGAAAGAAGAAATCTTCCCCCGTCCTTTAACCTGGACTCCATTCTTCCTCTAGAAGGATAATG
GGATCCAGACTATAATCAAGCTATGATCGTCAAATTTCATATAGAAAGATCAGGTTATTGCTGAT
CATCTGGTCTATCGCTCCTTTTGAGAGTGACATAAGCCTTTCCCCTGCAGTGAAGTTTCTTCCTT
CCCTGACTTACTTGAAAAAAGGCTTTTCTTTTCCTCCGCTCGTAGGAAGCTAGGCACAAGACGCA
GACGATCAGACGAAAAATGAGATGATACCTATTCCCTGGTCGAAT
Right flanking sequence: Indices 233421 -- 233920
CACTGCAGTCCATGTGAGGCTAGATCTTCAAAGAGGGTCATCTCTAGCTAGCGCTCAAGATCGAT
TCAATTCCATTCAAAATCTCGAGTATCGAGCAGATCATGTAAACCACCCTTATAATCAGAAGCAC
ACGCCTGAAAAGGGCCTCGAACACTCATTTTAAGCAACTCTTGCCTGAGACAGCTAAACCTGGAT
TGGGCTCTTTTAACCTCTCCTTTTCAAAGGCCTTCCAGAAACCCGTAATGGATTAGCTGAACTGA
GGAACCACAGCCTAGCGTTTAATTGGAATCGTTAACTTCATTGTTGCCTTCGACCAAGGGATAGT
TTTGCAATTCTCAGTAAAGGTTACTAAAGCCAAAACCTCATTGGTGGTCTCTGACATCAAAAATA
CGTGGACATCTAAGAACGTCGATTTCAGATTAGTCAACTTTCATTGAAAGAAAGAACCGAGACAG
CAGACAAGAGCCTTCTTGGCAAGCCCGATCACGGTTTGACTTCCT
Found at i:242328 original size:27 final size:27
Alignment explanation
Indices: 242290--242341 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
242280 ACTTGTCAAT
*
242290 AAACAATTCTATGTTCAATTTGACTAC
1 AAACAATTCTATGTTCAACTTGACTAC
*
242317 AAACAATTCTATGTTCCACTTGACT
1 AAACAATTCTATGTTCAACTTGACT
242342 CCTACCCATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.35, C:0.21, G:0.08, T:0.37
Consensus pattern (27 bp):
AAACAATTCTATGTTCAACTTGACTAC
Left flanking sequence: Indices 241790 -- 242289
AGCAGTAACGCTCATAGCAAGCAAGAAAGATGGGGTAAAGGGGCGAAACGGCGGGAAATAAAAGT
TCAGTTTATAGAGTCGGAGAGCTAGTAGAGCTCATAGGTTTCTACCTGTGACTAACTTAGTGTGC
TTTTGGTAGCAGCAGCCATACCAACAATCTATCTTTCGTAAATAAGCACTCACATTACGGTGCGA
GATCTGCCAAGCTAAGCTCAATCACAACCCACCGGCGAGTGAGGGCTAAACGGTATTTATAGATT
GAAACTAGAAAACCTTCATTCCTGAACTAGCCTCATGAACAAGCCAGTCTCAACTTTCCTGTTCA
ACTTTCTAGTGCGTCTATCTAAGGATAGATCTCGGTATCTGTGGAGAGGAAAAGAATGAATCCTA
CTAATGCGTCAAAATCTAAAAAAATTGATTTGTATTCCCCTTTCTTTACAGGTCTCGTGTTCCCC
CTATTGAACGAAATGCAAAAACCACATACCCACAAACTTGTCAAT
Right flanking sequence: Indices 242342 -- 242841
CCTACCCATACCGTGTTCAATTGTACAACTACCAATTCAATCTTGAGATTTAGTAAGAATAGCAG
ACGGTATACTAGTCAGGACTCTTCTTTTCTACGAACAAGTCAGTACTCGCACTATTGGGAGAACA
TGCGTCAAAGAAGGTCGTTTTCTTTTCCGTCCTCGCACTATTGTACGAATTTCTCCCTGTACCTA
AAAAGTCTTTATTTCACGCTGGAGCATTTGTAAGCGACGGGATCTTAGCAGCTTCTTCCCGAGTT
GCATTAGCTAAAGTGGATCTACGATCACGGGAACTAATCAATCGGTCTGTTCTGCCCCATAAGCA
TCTGGATGGTCTACGATCAGTGCTATTCGTACACCCTATGCCTGATTTCGCAACTTCAACCCTTT
CCCTATCCAATGTAGCTGTAACTGCGCCTTATTGGCTTCTTTTCAGTTAACAAGCAAGTACGCAA
ACAGCCTTCGGTTCCTAACAAGCTAAGCACCTACCCGGGGAACTA
Found at i:245169 original size:52 final size:52
Alignment explanation
Indices: 245091--245194 Score: 208
Period size: 52 Copynumber: 2.0 Consensus size: 52
245081 AAACGTAATT
245091 GTGCCAATTCCAGTTTTGAACTACCGCAGACTTGTTTCATAGTTTTCAACTG
1 GTGCCAATTCCAGTTTTGAACTACCGCAGACTTGTTTCATAGTTTTCAACTG
245143 GTGCCAATTCCAGTTTTGAACTACCGCAGACTTGTTTCATAGTTTTCAACTG
1 GTGCCAATTCCAGTTTTGAACTACCGCAGACTTGTTTCATAGTTTTCAACTG
245195 AGCGGCAGAC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (52 bp):
GTGCCAATTCCAGTTTTGAACTACCGCAGACTTGTTTCATAGTTTTCAACTG
Left flanking sequence: Indices 244591 -- 245090
TAAAGCTTCAAATGAAACTTCATATCCGAAACGCAGGAACGATCTGACTAGAAAGTCATTAAAAA
CTTGATCGAAGAACCAGCGTTTATTGAAGAAGCTATAGAGTCGATTACAAAAAGTACTAGTTTGA
AAGGCTCGTTGGAATTGATCCGCTACTGGATTTACATTATACGCAACAGAAGCACCTGAAGTACT
AAACAGAATAGGTATTAGTTTGGTAATGGTTGGAGCAGCAAACTCGGATTCGGCAAGAATCTCAT
TTTTTGGTAGTACGAAGGGGGAATTGGCCCAAAAATTGGATAGGGGTCAAGACGCTGTCGGGCGC
CGGCGGCTGACTCAAGTGCCCCCCGAACCGCGCGAAATGGTCGCCTATTACACGGCTCACTAACT
CTGCCTGGAGTGGTGGTACCTATTATTCGTCGGCGGGGGCGGTCCGGCGATACGTAGATGACTTT
TGGCTGGTACAACCACTCGATTGTCCACTTCTAATAAACGTAATT
Right flanking sequence: Indices 245195 -- 245694
AGCGGCAGACCCAACACGACTGACAGATAAGCCGACGTTAATGAAACTAGGAGTCTAATTTGGTA
ATGGGCGGTGATTTTTCTAGTTCATTTTAGGATCGCAACTTCCTGCGCAGTCCGTGCCAGTAGTG
ATATCCTAATTCGGCTACCTCTCCCACTCATCAAGGCAGAACATTAGAAAGGTAAACTATTGCCA
AGAGAGACCGGGGAACGCTCTGCCCCTTCACCTGCAAAAGGATCCGTTACCGGAGTGCTGCGCTT
CTCAGGGCCGTCTGAGTCAGAGCAACCCCGCCGGGGCGATCCAGTTACCCGGAATTTTCACTATT
ATTCTACAAGCATTGAACCGTACTAGCTTCGTTACAGACTTGATACTGAACTGTTCACCATCCGA
ACATTCGCTAGCTGGCAACACAACTTTTACCACCCCAAAAAGATCTCAAGTGATTAGGCGGGGAC
AGGATTCGAACCTGTAGTCTTCAGATCATGAGCCTGATGAGTTGA
Found at i:271938 original size:24 final size:24
Alignment explanation
Indices: 271911--271963 Score: 106
Period size: 24 Copynumber: 2.2 Consensus size: 24
271901 CTCATTCAAT
271911 CCCCTTTGCTCCAGCTTTCATCTA
1 CCCCTTTGCTCCAGCTTTCATCTA
271935 CCCCTTTGCTCCAGCTTTCATCTA
1 CCCCTTTGCTCCAGCTTTCATCTA
271959 CCCCT
1 CCCCT
271964 ATCTTTCTGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.11, C:0.45, G:0.08, T:0.36
Consensus pattern (24 bp):
CCCCTTTGCTCCAGCTTTCATCTA
Left flanking sequence: Indices 271411 -- 271910
CTTTTTAACCGAAAGAGAGACTGAACCAAGGAAGCAACCATACTGACTGAAGCCAGAAGAAGCGC
GGGGACTGACTATCAGACAGAACGGAAGAGAATTGATAGCTCAGGAAAGACTTTATCTCAACTTA
GTCCTCAGCTCGTGAATCAGGCTATCCTTTCTGATGCTCCTTATGTTTTTACCAAAAGGTAAAAC
ATTTCCTTCCTTTCTAGGTGTTAGCAGGCTCTCAATCAATGCGGTTCGTCCCATTCCTAAATCAG
GTTGACCATCGTACCAGTATTCAGGTTCATTCCTGACTTTCACATGGAAAAGGTTTAGGGTTCAG
AGTACCTGATAACCCCGCTAGGACTGGCAAGGGAAGGAGCACCGGCGAGTAGACCAGTGAGAGCC
CTCCATCAAAGGTCGATATCTTACCTTTAAAGCGGGTATAAGAATTGGAAGTCGGGATATCCCAA
TCTTCCAGCTCTCAAGCAGTTCAGAAGATTCATCCCTCATTCAAT
Right flanking sequence: Indices 271964 -- 272463
ATCTTTCTGCTTTCTTCGTCTATGCCTATGCCTCCAGGGATGGATCCAATTTCCTGTCCTTTTTT
GGAGAAAGAACCAAATGATTCATCTTGCTCCCTGTGCAACCTGCCCATTTTTTTAACTGTCTACA
GTTGTCAGCCTGCCATTCAATGCAATTCACATGAGCTTAGGAACCAGTCATGAACATTTTCTCTT
GGATAAAGAGGGAGCAAGAGTAAGCCTTCTTGATTCCATCAGTTATGCCCGGTAGAGTTCAGATC
AGTCCTGGAAAGACTTCCTGGCACTTAGGATTTTCCTGATGACCCAACTGGGATTGTAGCCTGGT
CAATTTCTTGCTGCTTCAGATAGTAGGTATGGACCCAGCCACAGTCTTTTCTCAAGGACCCGGAG
ATGTTTACAAATGCTTGTTCCACAGGTCAAGACACCCCTGCAGAAAGTTGGTATTCAAGAGACGG
AAACTATGTCAAGAAGGTGGAACTAGGAATAAGAACAGGGACCCA
Found at i:273298 original size:34 final size:34
Alignment explanation
Indices: 273260--273327 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
273250 GTCCGCTGTT
273260 GCAGCCTTGTTGATCACTTTTGGTATTTTCTTTC
1 GCAGCCTTGTTGATCACTTTTGGTATTTTCTTTC
273294 GCAGCCTTGTTGATCACTTTTGGTATTTTCTTTC
1 GCAGCCTTGTTGATCACTTTTGGTATTTTCTTTC
273328 AAGGTTATAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.12, C:0.21, G:0.18, T:0.50
Consensus pattern (34 bp):
GCAGCCTTGTTGATCACTTTTGGTATTTTCTTTC
Left flanking sequence: Indices 272760 -- 273259
TAACAATTTGAATAGAATATGAATAGGAACAGCCTTCAGAGAAAAGAGACATAGACAATGTATCC
TGAACAGTATGGCAATCTCTTCCTCTTTCGATTGGCAAAGAAGCAACTCCTTGAGCGGCTCTATC
AAGGAGCAGAGGCAAGGAAGATTCTCCAGTGGTCATTAATAATGCACTTTGCGGTCCTTATTGGG
TGCTGGCGAAGCATAAGAGGAGATTCTTAACGTCAGGAACTACAATCAAGTATACTCTTTCAGTC
GAAGTTGGTCTTAATCGTCCGAGCAGAGAGCTCTCACTCAAGTCAAGCAGATCCGGCAGGTAGCA
ACATGTCTGTGGTATCGGAAGAGCTGCATTCATTAGTATGTTAGTTCATTACTTCCTTAGTCCTA
ATGAGTTCAGTCGCTGCGCAGTATTTCCCTGCTGGATGTCTGGCCTCTAGATAGGCCTGTAACCG
TAGTTAGGAATTCTCCTGTATGAGGTGTTGGTGTAGTCCGCTGTT
Right flanking sequence: Indices 273328 -- 273827
AAGGTTATAGCCTTGTGTCCTTAGACTTGCCTTTCGTGTGTGTAAGTCCTTTAACAAACACTTCC
GCTGCCCTCGTGTTTCAGCCTTTATTGAGCAGTATGTCCCACCTTGCGACTGTTTGGCTTTAGCT
AGATCTTTGCCTAGCTTTACCGTGTTATATGGCTTGACCGAGCTCGGGTCTCAGTCTTTACCTCG
ACTGTTGTGGGCTTGGGCTAAGCTTTATGCTTCAACCTTGCCTGTCGTTCTTCGTGTCTTGCTAG
TCGTAGATTAGGTTGTAACTCAAGCCTTTGCGTTGCTGTAGATTAGGTTGTAACTCAAGCCTTTG
CGTTGCTGCAGAGGGCTTTGGCTCTATGCTCCTCCCTCTGCTTTTCTTTCTGCGCTTATTGACGC
GTTTTGGGCCCCTTTTTGTTAAAGGACTATTAACGTCATCTAATTGTGCACGGATAAGAGCAAAT
GTTAGTGCGAATAATTCATAATAAGAACTTTAAGAGTTCTTTTAT
Found at i:273631 original size:35 final size:35
Alignment explanation
Indices: 273590--273660 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
273580 CTTGCTAGTC
273590 GTAGATTAGGTTGTAACTCAAGCCTTTGCGTTGCT
1 GTAGATTAGGTTGTAACTCAAGCCTTTGCGTTGCT
273625 GTAGATTAGGTTGTAACTCAAGCCTTTGCGTTGCT
1 GTAGATTAGGTTGTAACTCAAGCCTTTGCGTTGCT
273660 G
1 G
273661 CAGAGGGCTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.20, C:0.17, G:0.27, T:0.37
Consensus pattern (35 bp):
GTAGATTAGGTTGTAACTCAAGCCTTTGCGTTGCT
Left flanking sequence: Indices 273090 -- 273589
TCTGTGGTATCGGAAGAGCTGCATTCATTAGTATGTTAGTTCATTACTTCCTTAGTCCTAATGAG
TTCAGTCGCTGCGCAGTATTTCCCTGCTGGATGTCTGGCCTCTAGATAGGCCTGTAACCGTAGTT
AGGAATTCTCCTGTATGAGGTGTTGGTGTAGTCCGCTGTTGCAGCCTTGTTGATCACTTTTGGTA
TTTTCTTTCGCAGCCTTGTTGATCACTTTTGGTATTTTCTTTCAAGGTTATAGCCTTGTGTCCTT
AGACTTGCCTTTCGTGTGTGTAAGTCCTTTAACAAACACTTCCGCTGCCCTCGTGTTTCAGCCTT
TATTGAGCAGTATGTCCCACCTTGCGACTGTTTGGCTTTAGCTAGATCTTTGCCTAGCTTTACCG
TGTTATATGGCTTGACCGAGCTCGGGTCTCAGTCTTTACCTCGACTGTTGTGGGCTTGGGCTAAG
CTTTATGCTTCAACCTTGCCTGTCGTTCTTCGTGTCTTGCTAGTC
Right flanking sequence: Indices 273661 -- 274160
CAGAGGGCTTTGGCTCTATGCTCCTCCCTCTGCTTTTCTTTCTGCGCTTATTGACGCGTTTTGGG
CCCCTTTTTGTTAAAGGACTATTAACGTCATCTAATTGTGCACGGATAAGAGCAAATGTTAGTGC
GAATAATTCATAATAAGAACTTTAAGAGTTCTTTTATTTCATACTTGGGCTCTACTGGCCTTTCT
TACAAAGCATATTGCTAATGACAATATGGAAACGAAGTACTTTTTCAGGACATCTGCATTAAAGC
TGTTTTTCAGTGGTTCTCCTTCTACAGTCATGAGCTTGTATGACCCTGGTGCCACCTGCTCGCAG
ATCTGGTAGGGGCTTTCCCTGTTGGCTGTGAATTTTCCATGTACATTTACCTTTCCTACCGCTGT
TGTTCTTCTCAGCACCAGGTCTCCCTCTATCAAAGGTCTGTGCCTGACTCTCCTGTTTTCAATCC
TGCTCATCCAGTTATTCTGTGCTGCTAGCTTAAGAGCTGCTTGGA
Found at i:291286 original size:24 final size:24
Alignment explanation
Indices: 291258--291305 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
291248 TAGTTTCCGC
291258 TTATAGTCTTACCAAGGTGTAGCG
1 TTATAGTCTTACCAAGGTGTAGCG
291282 TTATAGTCTTACCAAGGTGTAGCG
1 TTATAGTCTTACCAAGGTGTAGCG
291306 CATAGCCATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (24 bp):
TTATAGTCTTACCAAGGTGTAGCG
Left flanking sequence: Indices 290758 -- 291257
GAGGCTCCACTCTATCCTGTTGATAGCTGGAGGAAGAGGGAAAATAGGAATAATACCCTGCTTTT
AGGGGGACTCAAGTAGATTCCCTCATCTTTCGCAACTCGATTCCCTCATCCATAAGGACAATGGG
AAATACGAATCCCTAGGACAATGGAAAACTTTATACCTTTCCTTTACTGTAAAGTGAGGCACTTA
TTAACTCCTCGGACATTCACAATGTCAGTAGCTTGCTGTCTTCTCCCTCACAGCGCATTCCTTTT
GAAAGCAGGGGTTGCCAGCTGAAAAAAAGTAGACCTATATTCACCAGCTGTCTTTCTTTCAGTTC
CGTTCCAATTTAACCTTAATAGGTGGGCTGGGATACTAGCAGGGAAGAGGAATTAAGTAATCGCT
TTTCAAAGCTCTTTACCTAATTCGTGTGTCACCGCTGAGATGGTTGTTGTTCGAAGACTTACCGT
GAATAATAGAATAGGTTGATGAAAACGAATCTTATTAGTTTCCGC
Right flanking sequence: Indices 291306 -- 291805
CATAGCCATCTACTTGTATGCGAAGGCTGTTAAGCTGTTGTATAGGAATGCAACCTATCCCCCTC
CTATGAAAACCCTATCAACCAAGAATCCAATGGAACTAGACACCGGAAGATAAGAGGATGGAAAC
AAGATGTTAGCAAGCCTGCTAGACCGTGTTTACTCATGCTCTGGTTACTACCCATCCTCAATTGT
TTTTTGCTAGCTATCCTAGCAGTTACTAGATGCTGACTCATTCCCTTGAATTATTCTCTTTTGTT
TTGCTCCCTCACACCTTGAAGAAGAGCTGATCTTTCCAGGTCCATTCGAAGCTGTCCGTTGCCAT
AGAGAAACGATCCCACAACTTGGGTTACAAAGTGGAACGATCCACTCCGCGCTTTCACCTGTACC
ATATTCTTGCTTGTTATTCTTCAGGAATCTGCTCTAAAGACCCGAAAGCAATGAGGTGCTGGTTC
TGCGTGGGTTGGATAGCTCACCGGTCATGGGAGAGACTCCCTGGA
Found at i:292128 original size:20 final size:20
Alignment explanation
Indices: 292103--292149 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
292093 AAGAAGCAAG
*
292103 TAAGGATTGCTGTACTGAGC
1 TAAGGATTGCTGTACAGAGC
292123 TAAGGATTGCTGTACAGAGC
1 TAAGGATTGCTGTACAGAGC
*
292143 TACGGAT
1 TAAGGAT
292150 ATACTTCTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.28
Consensus pattern (20 bp):
TAAGGATTGCTGTACAGAGC
Left flanking sequence: Indices 291603 -- 292102
AGGTCCATTCGAAGCTGTCCGTTGCCATAGAGAAACGATCCCACAACTTGGGTTACAAAGTGGAA
CGATCCACTCCGCGCTTTCACCTGTACCATATTCTTGCTTGTTATTCTTCAGGAATCTGCTCTAA
AGACCCGAAAGCAATGAGGTGCTGGTTCTGCGTGGGTTGGATAGCTCACCGGTCATGGGAGAGAC
TCCCTGGACATTTAGCATTGGTTCCGGAGGGTAAAGTGATCTCACATCGGCTTGGAAGAGATTGC
GGGACAATCTATGGGATACGGAATAAAATAGACTCACTTCAGCAAGGAAGAGTAAAAAAAGCGAA
AGAGGCTTTAGTTATTTAGCTGTACTTTGAGGGAAACCAAGATGCTTGGGAGAAAGGTTGAGGGT
TCAGAGTACCTGATAACCCCGCTAGGACTGGCAAGGGAAGGAGCACCGGGCCTACCTTTACTCGA
GATCTCCTGTGTAATAGCGGGACACTTCGACGGCAAAGAAGCAAG
Right flanking sequence: Indices 292150 -- 292649
ATACTTCTCAGCACTTTACCTATTGCTTCGCTCTAGTGACAACGTACCTTTGGTGGATAAACTTC
TACGAAAAAAGGCTAGAATAGGTAAGATAGTTGGAAAGCCAGAGGCTAGTGAAGGGCTTGACTAA
GGATTTCTTACCCTGTCTCTGCAAAGGCTTGTTAGAACTCTCATCACCCATATGGGGCAAAGGGT
GTCTACCTCAAGTACGGTTTACAACCCTGTGTCGCTTTCGGGTACAGGTTCCCTTTGTTGAAGGC
CGTTCGAGCTTTTCCTGGGAGTATGGCATGGGTTACTTCAGCGCCTGGTACTCGAACATTGGCTC
GAGGTATGAGTTGATAGAAAAAAGCTAAATGCTCTTAAGATCGTCTCTCTGTCTGCATTGTTGTG
GTACCTAGGCTTTCTGACAGATCTGAGCGTGCTATTACGCATTCAATCTTCTTGACATAAGTACT
AGGTTATCAAAGTGCAGGGAACGTATCCGGCATAGCTACAGGGGA
Found at i:296945 original size:18 final size:18
Alignment explanation
Indices: 296924--296958 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
296914 TTCTTATCTG
*
296924 TCTTAACCACCTTGGTTT
1 TCTTAACAACCTTGGTTT
296942 TCTTAACAACCTTGGTT
1 TCTTAACAACCTTGGTT
296959 GTTTCCTTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.20, C:0.26, G:0.11, T:0.43
Consensus pattern (18 bp):
TCTTAACAACCTTGGTTT
Left flanking sequence: Indices 296424 -- 296923
TAAATGCCTATATTGCTTTATAATGTTATTGTTATGTTGATGTTATATTAAAGAATGAAATCTAA
AAAAGTTGCTTAGTCCCATTCTTTATAATTGTCTTTCTCATACTGTGTAAACGAACTTCAAGTCT
GAATTGTGTACTGTACTCAACAGGAAGCGTCACAGCCCATCCCGATGTCATTCTCCATTCCAATT
GAAATAGCACAGAATCTAGCTCTCGCTATCGTGCCTCAGAAGCTCTAACTATGCCTTCATCCGCC
CCTCCGAAAGAACTCCAACTATTGGTTTATGCGCTCCAGTAAGCGATTTCGTCTCAAGTGCAGCT
TTTACGTTACGACTATACTTCGTTGCTGTGCTGCTCTCTGGGTTGTGAAAGAAGTGCAGTTTTTA
CGTTAGAGGGGGATCTCTCTGGTATACTTTTTACGGAGGTTTCGTCTTGTCAGTCTGGTTTTTCC
TCTCTGTTTTCTTAACAACCTTGGTTTTCTTGGTTTTCTTATCTG
Right flanking sequence: Indices 296959 -- 297458
GTTTCCTTAGTGAATTTCTTCATCTCATCTTGAAGATGATCTATCTTACTTTTCATCTCGGAGAT
CTCTCTATCCTTCTCTGAAATGATGCCGATCATCTCTCTATCCCTTTGAGAGAGTTTTTCACTGA
GAATCTCACTCTTAGTCTGAAGGCGATTCATTTCATTCCTTAGATAGAATACAATTTTTTCGCCA
CTGCGGGGGTTTATGTTAGACAGATCTTCTACATGTATAGGTTTAGTATCAATCCATTTATTATT
ACTATATACAGGTATCCTCTTTGTACCTCAAGTTCTATATAGAACAGATTTCTTTACAACTGTTC
AGGATTATATGAAAAAAGACCCTATCAATGTATGGGTTTATGATCGAATTCACAAGAAGAGGCGT
CAGGTTACTCTTAGAGTCCCTTCGGAAACTAGAGATAAAAGGAAGACTCAAGTATCTACCTTCGT
CAATTTCATTCACCAAAAGGATGCATATATTGCTATGAATGTTAT
Found at i:297984 original size:21 final size:21
Alignment explanation
Indices: 297960--298005 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
297950 TGTATTTCCG
*
297960 GAATCATTTGAGTCATTCATC
1 GAATCATTTGAGTAATTCATC
297981 GAATCATTTGAGTAATTCATC
1 GAATCATTTGAGTAATTCATC
298002 GAAT
1 GAAT
298006 TATAGTGTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (21 bp):
GAATCATTTGAGTAATTCATC
Left flanking sequence: Indices 297460 -- 297959
TTGGAAATGCTTAACCAGGGATCCCCCATATACACAGTTCATGACAACTTTATAACTACAGCTGA
TCATAGCAAGAAACTGCCTGATACTTATGTCAATATATTTTGTAAAATGGATCCTCTTTCTATCA
TCAATGAGTATATCTATCACAATGTGATTGATTATCAAGAAAAATGATTAGATGGTGGTGAATTT
GTTTACGATGAAAAAGGTATTGATACAGAAAACTGGAAAGGTATAATCAAGCAGGAGGATCTGAA
AAAATACTTGTATAAAAATATACCAGAAAAACAAAAAAAGAAGAAAAAGGATAGGGATACGTGGG
AACAAAAGATTCAAACCATAATGACTTCTTACGAGAACTATGTTAATTTCTTATGCGAACCTTTT
GATAAGAGTTTAGGAAAAAATGAAAAAAAAAGATGTTTTTCGAAGGTAATTAGTAAACTTGATCG
TGATACTAAGTATCAATATTATAGGGAGAAATTGATGTATTTCCG
Right flanking sequence: Indices 298006 -- 298505
TATAGTGTTCATTATTAAAGAAAAAAAGATGTGGACTGGACCCACTTACTTTTCTTTGTATTTCC
TGCTGAAACCAACCTAAGAGAAAGAGACCCAGGTGATATGGATTCGCTAGGACGGAGTTGCTGTC
GATTGAGGATTGGCCGAGGGGAGTGCCATCATGTAGCTGGGTACAAATAAGCCAGTGAAAGAGGA
GTAGTCAGGGTACGACGAAGCACGCCTGGTACGTAAGCGAATACGGATCACGTGGGTTTGTACTG
ATCCGCTTTCGAGCTGTCGAGTGACGATTGCTCCATCTATTAAGAAAGGACGCGGGGGGCCTGTC
TTATAATAAAGGGGGTACTCTCTTCTCTGATGTGCGCTATATTATTGTGTCCTATTCCTGAAGGA
GTGATCCGGGATTAAGCCACGTGGCGATACCCGCCAAAAGAAAGGGGGCCTTTCGTACGGATTGG
AGTACGAAGAGAATTCTTCAGCACACTAAAATCTAGTGGATCCGG
Done.