123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_066410
Parameters: 2 7 7 80 10 50 500
Length:  300933

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6193--6219	8	3.4	8	100	0	54	88	11	0	0	0.50
6187--6242	16	3.5	15	81	11	51	83	7	7	1	0.86
10992--11027	7	5.4	7	93	6	58	0	13	0	86	0.58
10990--11027	13	3.0	12	88	11	58	0	13	0	86	0.56
10980--11027	19	2.6	18	90	3	69	0	18	0	81	0.70
23293--23317	12	2.1	12	100	0	50	32	24	8	36	1.84
42396--42421	7	3.7	7	100	0	52	88	11	0	0	0.52
42397--42446	21	2.4	21	83	3	57	84	6	8	2	0.86
42418--42447	15	2.0	15	93	0	51	80	0	16	3	0.85
51679--51784	53	2.0	53	100	0	212	20	18	30	30	1.97
54990--55037	24	2.0	24	100	0	96	25	16	25	33	1.96
55835--55881	20	2.3	20	92	0	76	27	14	29	27	1.96
60656--60690	18	1.9	18	94	0	61	20	25	11	42	1.85
61692--61737	21	2.2	21	96	0	83	32	15	15	36	1.88
95863--95941	39	2.0	39	95	0	140	31	17	27	22	1.97
105525--105580	1	56.0	1	100	0	112	0	0	0	100	0.00
108201--108246	24	1.9	24	86	0	65	23	19	30	26	1.98
120639--120672	18	1.9	17	88	5	50	14	20	29	35	1.93
129258--129395	46	3.0	46	100	0	276	28	26	23	21	1.99
131107--131149	18	2.4	18	81	18	54	18	20	25	34	1.96
132759--132802	21	2.1	21	95	0	79	29	18	13	38	1.89
159058--159091	17	2.0	17	100	0	68	23	23	11	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
160511--160574	25	2.6	25	100	0	128	53	4	10	31	1.57
168101--168140	20	2.0	20	100	0	80	30	10	15	45	1.78
170113--170151	13	3.2	13	78	14	55	0	10	0	89	0.48
170116--170152	18	2.0	19	94	5	67	0	13	0	86	0.57
184664--184693	12	2.4	13	94	5	53	90	0	10	0	0.47
184664--184693	16	1.9	15	93	6	51	90	0	10	0	0.47
186230--186309	31	2.6	31	75	0	79	26	25	13	35	1.93
187015--187140	45	2.8	45	91	0	189	33	18	23	24	1.97
189641--189687	21	2.2	21	96	0	85	2	40	25	31	1.68
189653--189698	21	2.2	21	84	0	56	6	43	23	26	1.78
198681--198720	16	2.6	16	92	4	64	40	27	27	5	1.77
204753--204783	15	2.1	14	94	5	53	67	0	0	32	0.91
208498--208554	22	2.5	22	97	2	105	21	29	33	15	1.94
222401--222462	31	2.0	31	100	0	124	25	29	9	35	1.88
233381--233420	18	2.2	18	86	0	53	37	20	17	25	1.94
242290--242341	27	1.9	27	92	0	86	34	21	7	36	1.82
245091--245194	52	2.0	52	100	0	208	23	23	17	36	1.95
271911--271963	24	2.2	24	100	0	106	11	45	7	35	1.69
273260--273327	34	2.0	34	100	0	136	11	20	17	50	1.77
273590--273660	35	2.0	35	100	0	142	19	16	26	36	1.94
291258--291305	24	2.0	24	100	0	96	25	16	25	33	1.96
292103--292149	20	2.3	20	92	0	76	27	14	29	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
296924--296958	18	1.9	18	94	0	61	20	25	11	42	1.85
297960--298005	21	2.2	21	96	0	83	32	15	15	36	1.88

Tables:   1

The End!