Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_051989
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 273543
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Found at i:23733 original size:39 final size:39
Alignment explanation
Indices: 23678--23756 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
23668 CCCATCCTTC
*
23678 AATATCATGATTGGGTCGACCAGGCCAGATCATGAGTGA
1 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
*
23717 AATATCATGATCGGGTCGACTAGGCCAGATCATGAGTGA
1 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
23756 A
1 A
23757 TAGAAAATCG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.32, C:0.18, G:0.28, T:0.23
Consensus pattern (39 bp):
AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
Left flanking sequence: Indices 23178 -- 23677
GGAAGCCGGCTTGTGCTGGATTCCTGCATACCTCTGGCAGGCATCGCAGCTCTTAGCATGTGCTA
CGTAATCTGCAAGGACCGTAGGCCAGTAGTGGCCATGTCTCCGGATCTCTCGAATTTCCCTCAGC
GCGCTCGATCTACCTATCTTTCTGAGTTTGATTGGTTTTCGCTCCAGCTGACCTTTCCATTTAAT
CACTGACAAAACCTACCTTTCAATTCTTCTTACCCTATGAGCTTTCAGCAAAGGACAGATTTCTT
GGTCCATTGACATCGATCAACGAAATAGACCTCCTTCTTTCACTTTTGTCGTTGTCTTCCAATTC
AAAGAGCCCCATTAAGTAAGTGTTCCGCGAGAAAAGAGAGGCTGACATCTTTTCTTATCTATCTA
TTTTCGTAAATGAAGAAGATAAGTGAGAGCTTACTGACTGCATCTTCTAAGAAGGGCTTGGAAGA
AGAAATAGAATCTCCTTTCTTTTTCGAGAAAAGGTCCCATCCTTC
Right flanking sequence: Indices 23757 -- 24256
TAGAAAATCGAAAATGTACATAGCAGTTCCAGCTGAAATACTTGGAATAATTCTACCACTTCTAC
TAGGAGTAGCCTTTTTAGTGCTAGCTGAACGTAAAGTAATGGCTTTTGTGCAACGTCGAAAGGGT
CCTGATGTAGTGGGATCGTTTGGATTGTTACAACCTCTAGCAGATGGTTTTAAATTGATTATAAA
AGAACCTATTTCACCAAGTAGTGCAAATTTCTCCCTTTTTAGAATGGCTCCAGTGGCTACATTTA
TGTTAAGTCTGGTCGCTCGGGCCGTTGTACCTTTTGATTATGGTATGGTATTGTCAGATCCGAAC
ATAGGGCTACTTTATTTGTTTGCCATATCTTCGCTAGGTGTTTATGGAATTATTATAGCAGGTCG
GTCTAGTAATTAGGGGGCGGCCGTTCGGTCGCCTATGATACTAGGATCAATAGGTCAAAAATGGG
TTTGTGCCGCAGGTGTTGAACGATCCACTCTACACAGGTGTGGGC
Found at i:33346 original size:1 final size:1
Alignment explanation
Indices: 33340--33405 Score: 114
Period size: 1 Copynumber: 66.0 Consensus size: 1
33330 AGGAAATTTC
* *
33340 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTCTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
33405 T
1 T
33406 AAATAAAAGA
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 61 1.00
ACGTcount: A:0.02, C:0.02, G:0.00, T:0.97
Consensus pattern (1 bp):
T
Left flanking sequence: Indices 32840 -- 33339
TTTACTTTTTTGAATGCAGTTCGGGATCGAACGAGGTTCTTAAAAAGAAAGGCTATTCATCTTCC
CTTACGGGCTTATGGATCTAGTGGATCGTCCCAGTAAACTACTACTTATACTAATTATACTAACT
ACTTAGTTATCGTCACTGGCTGCAGATCTGGCTTGGCTCGATAGCCTATTGAATAGGATGGAGGA
AGCCTTGTCCCTAGCTTCTGAAACAAGAGAACGGACCGACTCTAACTAATCCACTCCTACTAACA
GGAAGTGTAAGGGCAGACCTCGTCCTACTTTCACTCTACTTTTTCCATTTCAATGCTAGCTCGAT
TGCAGCTAGATTTCTCAGTAGGGACTACTAATGGACTATCAGAAACGAAGTGAGGGATTGGACGA
CGGACGGGACAACTAGCTAATTGGGGGACGGAGGGACAGAGAGAACTCTTCAACGAAAATCAATC
TTGAAATTAAATAATAATAATCTCTATCGTTCAGTAGGAAATTTC
Right flanking sequence: Indices 33406 -- 33905
AAATAAAAGATAGAATCGTTCAGTAGGCTAATCTTCAAAGTTTATCGATTGAGACAGCGGCAGGC
CCAAAGAGCTCTACAGTAGTGCCTTGCGAGATCGTAGCTCGTTCACCTAAGATGGAAAAGCACTT
GGTTGAAAGCCTAGCAACGAGAAAAAAGAGTCCCATGCATCCTTTAGTCAACAACCATTAGTAAA
GAATAGGATCAGACCAAGTGCGAGATTGGATCAAAAATAACGTATAGAAAGGATTTGCAACAGAG
AGCCTCAACAGCAGCTCTTAACCCACACTTTTTGCTAGTCAATTGCATTTCAAGTTCCCGCACAG
TTGATCCAGCAAAAAATAGAATCTAGTCTCCGTGAGTCTATACCAATATTACACTTTCTTTAAAT
ACTTTTTTTCTATAGGTTATGTTATAAGGAAGCCGAATTTCCTAGGAAGAGAAGCGTGAGGAAAA
AGAACAGGGAATAAAGGAGAAAAGGAGGATTGAAGGGGACGTGTA
Found at i:36156 original size:24 final size:24
Alignment explanation
Indices: 36111--36156 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
36101 GAAAAGAAAC
* *
36111 TGGTTCACGTAAGAATGGACGTCT
1 TGGTTCACGCAAGAATGCACGTCT
*
36135 TGGTTCACGCAAGAGTGCACGT
1 TGGTTCACGCAAGAATGCACGT
36157 AGAAAAAGGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (24 bp):
TGGTTCACGCAAGAATGCACGTCT
Left flanking sequence: Indices 35611 -- 36110
ACAGAATCCAACCACACCGGAATGGATGGTACAAAGTCCTCCAGCTTTTCATACTTTTGGAGAAC
TTCCAGCTATCAAGGAGACGAAAAGCTCTGTGAAGTAAAAGAAAAAAAGGTCGCCGATTGCTACT
AAGAACCTAACAGAACTTTTCAAAATTGAAAACGGATCAGTCGACCTGGTCTACGAATCTATTCT
AACTATCAACGAATTCTTCAAATTTTAGGTGGGATGGGGATTGTAATTATTTATACTTCTCGAGG
TATAATGACAGACCGGGAGGCTAGATTCGAAGGAATCGGCGGATCAATTTTGTGTTATATATGGT
ATTCTGATATCCGAATTAGATCCTAAATTTACTATTTGTGAAAAAAAGAGAAAGGGCGGGTTGTA
TAATCTCACTCCTCCCCCATTAGTTGATACTTCAAGGAGGTTTTATCCGGAATGAATAAAAAAAG
AAAAAAGAAAGAAAAAGAAAATAAATAAAAGAAAAGAAAAGAAAC
Right flanking sequence: Indices 36157 -- 36656
AGAAAAAGGACTTATTCATGTTCAAGCAAGCTTCAACAATACCATTGTGACTGTTACAGATGTAA
GGGGTCGGGTGGTTTATTGGGCCTCCGCCGGTACTTGTGGATTCCGGGGTACAAGAAGAGGGACA
CCGTTTGCTGCTCAAACTGCAGCGGGAAATGCTATTCGTACAGTAGTGGAGCAAGGTATGCAACG
AGCGGAAGTGATGAAAAAGGGTCCTGGTCTCGGAATCCCATCTTCCAGGGTCAGGAGCCACGGAG
CCAGAAGACCGTTCGACGATCCTACTTCTGATGTCATCCCCTTCTGTTCCCTCCCTGTTGAATAT
CCCAACTATTCTCTATCAATTCCGGGATGGATCATGAAAGATTTTGTCTTGAAATGCCGATAAGG
AATAGCCAGTTATAGAAGCGGGTGGCAGGGAATGAAAGCAAGCACTCCTGTGCTATCAAAGTGGA
GAGATTAGTTAGAGCTAGGGGCAGGCCATCTATTCCTGCTTGACT
Found at i:47612 original size:18 final size:17
Alignment explanation
Indices: 47589--47622 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
47579 TTGATTTCGC
*
47589 CCATTGTTGTTGCGAGCT
1 CCATTGTAGTTG-GAGCT
47607 CCATTGTAGTTGGAGC
1 CCATTGTAGTTGGAGC
47623 GAGAGGAACG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.15, C:0.21, G:0.29, T:0.35
Consensus pattern (17 bp):
CCATTGTAGTTGGAGCT
Left flanking sequence: Indices 47089 -- 47588
GTATCCCGACAAGGTGAAAGCCATTCAGGAGATGCCGATCCCACGAACTAACTGAGAAAGAAGTT
CACGGATTACGAGAACAGATATTCAGCACTAGAACGGACGTGCTGCGCATTCGCTTGGGCTGCTC
TGGCAGTACATGCTTTATCACACAACTTGGCTCATCGCTCGCATGGGCGCACTGAAATACATATT
CGAGAAAGCCTCTCTCTCTGGGGGGATAGCAAGGTGGCAAATGCTCCTGGCGGAATACTACATTG
TTTTCAAGACTCTCAAAGCCATCAAAGGCCAAGCACTGCCAGTGTGTTCAGGGGTTAAAGGTATC
TTCCTGACCACTATCCAAAGGATTCAGGCCTCTAAGACAGTCCCATCATTCTTGAGAGTCTTTAT
TTGTAGCTAAAGGCAGAGGGTCCGTTACAGACAGGTGCGGAGAACTAGTTAAGGTGACTTGGGAA
TAAGGGCTTGGAAGAGCAATGCGTAGAATCAGTTGTTGATTTCGC
Right flanking sequence: Indices 47623 -- 48122
GAGAGGAACGATTATCAGAAGCAGCTGAAGTCTGAGACACAAAGGCTGATTGCTGCTCACTGTGT
TGTGCAGCTTGTATGCGATGAAGACGCGATTCTTGGTTAAGGACCTTAGTCCGCAGCTCCTCAAA
CGATGGAACAGTCTTAGAGTCGGAGATGGTTGTAACAAAAGCTTCATATTCAAAGGGCTTTGTAG
TGAAAACTACTTTGGGGACATAGAAGAGAGTTGATAGCAGCCAAGGCATCAACCATAGACTTCAG
TTCCCGTAAATAGGCATCCATAGGCTTGTTACCTTTCCTGTTATTCTGAATATCGAACTTCAATT
TCATTTCTTTAGCCGTGGACTGATAAAAAAATCTTTGCTCTAAAGCCATCCAAACATCCATATAT
GTTTTGTTTTCATATTCTATTGTAGACTTCCGTCAACATGTCCACTGAGAGTGTCGCGTTCAACC
AAGAGCGAACACTTTGATCCGTTCTCACCCAAGCACTATAAGCGG
Found at i:56277 original size:46 final size:46
Alignment explanation
Indices: 56210--56301 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
56200 GTCTAACGCT
56210 TGCCTCCGGTGGCTAACCTAGGTTGAGCTGAAAACTCCAAAACTAG
1 TGCCTCCGGTGGCTAACCTAGGTTGAGCTGAAAACTCCAAAACTAG
56256 TGCCTCCGGTGGCTAACCTAGGTTGAGCTGAAAACTCCAAAACTAG
1 TGCCTCCGGTGGCTAACCTAGGTTGAGCTGAAAACTCCAAAACTAG
56302 GGTTCCAAAC
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.28, C:0.26, G:0.24, T:0.22
Consensus pattern (46 bp):
TGCCTCCGGTGGCTAACCTAGGTTGAGCTGAAAACTCCAAAACTAG
Left flanking sequence: Indices 55710 -- 56209
CAAGATCGAAAAGAATGCATTGGATGGATGCCCGGGCATTGAGAAGGAAGGACGCTTTCAGAGGC
GAAAGGCCATGGGGAGATACCGTCTGTGATCCATGGATCTCCGATCGGGAAACCGTATCCAAGCT
CCGTGGCTAGTCTGCGCTCTTTGGACTTTTCAAACTTAGCGAACTGAAACATCTGAGTAGCTAAA
GGAAGGGAAATCAACCGAGACCCCGTTAGTAGCGGCGAGCGAGAGCGGATTGGGGCTTTGAAGAA
AAACAAAGACGAAGCTTCGTTCCTCAGCAAAGTGTTCATTTCTTTTTCGCCAGGTTTCATTCTCT
TTCTTGGATGATGGAAAAACCAGCAAGCTACGGCTTGAAAGCTTACCTTCTTCTCTTCTGGAGAA
AGGGCTTTCTTTATAGATGAAGACGTTGAGTAAGGGGGGCGGAGCTTGAAGAGCGAAGCGAGCTG
CGCTAGCCTATTACGTTTTTCAGCAGCAAGCTACGGTCTAACGCT
Right flanking sequence: Indices 56302 -- 56801
GGTTCCAAACCTTTCTCTAATAATCAGGTAAGCTTTCAAGCCCCTTGACTTTCTATTAGTTTAGT
CAAGGGCGCTGTGAACTGTAATTGTGAAAAGGTTGGAAGATCTGGCCAAAGAAGGTGATAGCCCT
GTAGATTCGTTCCCATGGTTCGATCCTTCCCAGTAAAACGCGGCGTGTTCGAATTCTGATCGCTT
TTACGCGAGAAAGGGGGACCACCCTCTAAGCCTAAGTATTCCTCAATGACCGATAGCGTACAAGT
ACCGTGAGGGAAAGGTGAAAAGAACCCTATTTAGGGAGTGCAATAGAGAACCTGAGATCCGATGC
GAACAATCAGTCGAAGGAGCGGAGCTTAGAGCCTTGACTTTCTATATTAGTCAAGCGCACTCACT
CTAACGGCGTACCTTTTGCATGATGGGTCAGCGAGGAAATGGGAACAGCGGCTTAAGCCATTAGG
TGTAGGCGCTTTCCAGAGGTGGAATCTTCTAGTTCTTCCTATTTG
Found at i:58053 original size:18 final size:18
Alignment explanation
Indices: 58013--58055 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
58003 ACCGCCCTGC
58013 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
58032 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
58049 CATAGTC
1 CATAGTC
58056 AACAAGGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 57513 -- 58012
AGGGCTGCCGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTACAGAACCATGCCTGTC
TGTTGGAGCGAATTGGATGATCGGGCCGAGGGCTGCCCCCTCTTCCCCTCACTCTCCTTTCCCTA
ATATGAACCTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGCCCGGTCGCCCTACGCGACTGGC
GCTTCAAAAGGCGAAACTCTCGTCGTAGTTTGGCGACCTAAGGGGCGGACACTTTTTGTTATCTA
AAGGCGAAGACTCGGAAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGGCTCCGGCTCC
GCGCACCTGCTGACACCTTTCGAAGCACTTTCTAGTGTGCGCTTTAGTTTTCGAATGTCTCGTTC
AGCGTCACGAGTCTACAAGCCTTTCTCATTTCAGTGCTCGCCCTTTGAATCGGGCCTTTAGTCTT
TTGATTAGAGTAGGGGTCGCGAGAGAGCAGAGCGTACCGCCCTGC
Right flanking sequence: Indices 58056 -- 58555
AACAAGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACC
GTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAA
GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAA
AGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACAC
GATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAAGTCGGAAGGAGAAGTGTTATAAGCTTTGA
ATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGC
ATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAA
ATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTA
Found at i:59691 original size:21 final size:21
Alignment explanation
Indices: 59665--59708 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
59655 ATATCTAGTT
59665 TGAATTATAAGACCCTCTTTA
1 TGAATTATAAGACCCTCTTTA
*
59686 TGAATTATAAGGCCCTCTTTA
1 TGAATTATAAGACCCTCTTTA
59707 TG
1 TG
59709 CTCTCAAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.39
Consensus pattern (21 bp):
TGAATTATAAGACCCTCTTTA
Left flanking sequence: Indices 59165 -- 59664
ACCTATGGTGTACCAGTTGTTAGCAATAGCAGCGCCGGGCAGCTAAGTTGGTATGGAAGAACTGC
TGCGCCGCGGGAAATCCTTCTCTATACAAGTTCTCGGACGAGGTTTTTGAACAGAACTTCGATAG
GCGAGAGGTGTAAGCACCGCGAGGTGTGAAGCGATCTCGTACTAAACGAAAGAACTTTCACTTTC
CATAACCAAAATGAAAGAAAGTAAACCTATTCCTGCAATTGCGGTCAGTCTCGCTACCTCTTTAG
TTGCCGCCCCCTACTTGCTCATTCGCAATGACTACCACAAGAAAGCCGCCCCCTATCTCTAAAGG
GGCTTATGCACTCCACGACTTTCTTATGTTATGGCGAAGACTGAATTTAGCTTCCAACCCTAGTC
AGCAAGCTTCAAAAGTCCTTTCTCCTTTCTTTTCCGAAACTCAAATAGAAAACTCTCCCCATGGG
ACCGGGTTTTGAGGTTGTCATACCACTTTCATCCGATATCTAGTT
Right flanking sequence: Indices 59709 -- 60208
CTCTCAAAGACCGGCTTTTACAGAACTGAGATTCCATAGGCCGAAACGAAGCCCTTTAAAGGTAG
AATTAGGAGTCGAAGCCATGCATTTAGCCCGATTGCTATTCGCCCTTTTTAGCACTAGACTGACA
TTCTCATTTCGCTTGTTCAGTTCAACGAAAGCCGGTACTAATCAAGCACAGTTTAGCCCTATGAT
TGAATTGCGATAGTTGGATTCCCTCTTCCTATAGCTATGACTGGCAACCCCTATAAGTCAGTTTT
GACTCCCTCTTTTAAGGTCGAGACTATCTAAAAATCAATATGGTCTAGCTAGTTCTCACTTCCGA
GCTCTAACTCCTTACTTTCTTTCCCACCGTAGAACTCCAATCGAAAGGGGAATCTCCCCTTGGTC
CGCTTTCTCTATCTGGGGTTCATTCTGTTCGTACACATCTGATCCTTCTTTCTCAACCTTCAACT
TCTTCCGATCCTCTTTAAGCAGGAAGTGCGATCTGAAGGCCTGGG
Found at i:82229 original size:17 final size:17
Alignment explanation
Indices: 82207--82240 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
82197 GGGATCCTTT
82207 CTTTCTATCTTGACGAA
1 CTTTCTATCTTGACGAA
82224 CTTTCTATCTTGACGAA
1 CTTTCTATCTTGACGAA
82241 GGCTGGAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.41
Consensus pattern (17 bp):
CTTTCTATCTTGACGAA
Left flanking sequence: Indices 81707 -- 82206
AATTCTTTCACTAGTCTCAGAAGCTCTTTGAGAAGCTGTTGAGAGTAAAGAGGAATGCCCTTTTC
CCTTTAGCATAGATAATCCATCTTTCTTATTCTTATATATAGCTTACTCGAAGGTTAGCCCCCTC
TGCTAGCCTTGAGGGAAGCGAAAGAAGTCAGGCAAGTGAAAGTGAAGTTGACTATAGCTTTTTGG
CAAGCGATCTCAACAAAGAAGCATAGCTCAGTGACGACTATCAATTTACTAAGAGAAGAAAGATC
GGATTGTAGGCTAGATTCAAGGTATGCCAGTTTCTTGATTCTACTCAACTTTCCAGATTGGCTTA
GTGTTACATCTATCAACTGACTGAGCTTCCTTAGCTGACTGGGCTTTCAGCGCTGAGTTTCAAGA
CAAAGCGAGTTACAAGACTCTGGGACTAAGAAGTTTCTCTTCATCACGGGGCGCATTCGTCTATC
GATCTTAGTCTTAGAGAAATGGATGGTAGTAAGGAGGGATCCTTT
Right flanking sequence: Indices 82241 -- 82740
GGCTGGAAATGACAAGGAATTGATAAATGCCACTAATCATCCAACTTTGAGATGAAGGACATGGG
TGAAGCTAGTCTATTCTTTTTTCTTTTCAATTCAGATAACCTTTATGCTTATAAATGAATCCGTA
AGAAGCTATATTCATCTTGACTTCGTGACCAATCTATCGGACATAGAAGACTTAGTGTGTTTTAC
AGCTTGAGTCCCATTACATCTGCATCATATCCTGTAGGCGAGGAAGGAAACTGACAGCTTGATGA
AGAACGTTAGTTAGATTCGATTTAGTCTTGAGACAAGCCCGACTGGATAAAGAGAGGAAAAAAAG
ACAAATCTTTCTATCTTAGTGCAACTGAGCCCTGACTTGAGATGAGATTGAGAAGGCGAAAAAAG
AGCTATAATTGCCTTACGCTGCTCTGAGATCGTAAAGCCGTAAATCAGTCATTCTATTGTCATCC
CGTCTCCTTCAGCAGATCCTGGAGGCCTGGAAGTCGTTGAGTTTT
Found at i:83688 original size:25 final size:25
Alignment explanation
Indices: 83660--83723 Score: 119
Period size: 25 Copynumber: 2.6 Consensus size: 25
83650 CAAACTATAG
83660 ACTAATGATAAAATAGATAGATTAT
1 ACTAATGATAAAATAGATAGATTAT
*
83685 ACTAATGATAAAATAGATAGATTCT
1 ACTAATGATAAAATAGATAGATTAT
83710 ACTAATGATAAAAT
1 ACTAATGATAAAAT
83724 CGATGAAAGT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.52, C:0.06, G:0.11, T:0.31
Consensus pattern (25 bp):
ACTAATGATAAAATAGATAGATTAT
Left flanking sequence: Indices 83160 -- 83659
CAGTCTCATGCTTCTATAAGGCTTTTAGAGACTCCACCTATTGTGATCCAACAGCCTATACGTTC
AAGCTTTCAAGCCCGAGCTAGTCTTCTTATCACCTAGCTACTTCACAGTCTCCTTTCGCGTACTC
CTCTTCCTATCTTCTCTCTTCACGAGACCTGTACATAAAAAACAAAGGTCTAGGTAGCTCATTTC
CTTCTAAGAAGTCAGATCTCCTTCTTCCTATATTATAAAAAGAATGAATAAGAGCCTTTCTTAAC
TCTTGAATTGTGTAAGGCATTTAGGAGCGCTCTTTGAATCCAACTAGAAATATCATAAGAGAAGA
AAGCAACTTCACCGAAAGGGCAGGTCTTTCTTTTTATTACTGATCTTATCAAGTAGTGCTTCGAT
AAGCCACCGCCCAATAGAGCTTAGTCATGTGTAGATCGAAAAGGTCTCGCGAAGCTGGTCACCGG
TAGGTCTAAGAACGGATTGAAAGCTTGATAAGCTGCAAACTATAG
Right flanking sequence: Indices 83724 -- 84223
CGATGAAAGTGCAAATGATACGGGTTGGATCTTCAGTGAGAATGAATTGATTTCGCAGTGCTAGG
GCGTTCATTCCGTTTCTCTTATTCATCGCTCTTCTGATGCTTTTCTATCTTCTCTGTCTTTCGAT
AGGGGGAATCTCGTTTTTTATTGATGTACTTTCAAAAGTAGCGGGCTTCATAGGGGTGAAGGCCC
TCTCTTTGCTTTTTAGCAAGATGGGCTGCTCCTCCGCTCTGGCCTTCGTGATTGGCTGTGCTTTT
CGAGCACTCGTCACTACGGAAGCAAGCCCCTCTCTGGCGCATTGGATGCTTCCCGGACCTTCTCA
CCAGCCTCACGTGGCAGAAGAGGATTACCTGCGGGACCATCCTGTAGCGCACCGAAGCGCCCCTC
CTGTAGGTCTTGAGGTGATCAAACCGGTTATAGAAGACGGGCAGCGTTACGACGAACTTGAGGGT
CGCCTCAATCGGCACCTCTTGGAGAATAGTGATCAAATCAGTACA
Found at i:89690 original size:16 final size:16
Alignment explanation
Indices: 89665--89704 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
89655 TACATCGTAG
89665 CGCA-AAAGAGCATCC
1 CGCAGAAAGAGCATCC
*
89680 CGCAGAAAGAGGATCC
1 CGCAGAAAGAGCATCC
89696 CGCAGAAAG
1 CGCAGAAAG
89705 TTTCCACCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 4 0.17
16 19 0.83
ACGTcount: A:0.40, C:0.28, G:0.28, T:0.05
Consensus pattern (16 bp):
CGCAGAAAGAGCATCC
Left flanking sequence: Indices 89165 -- 89664
GCTAAAATTCCAGCTTCAAGCGTTCTGCAGCTCATAATCATATTATGGAAAATGAGGCGTGGGAA
AACGGCACCGATTCTGTCCAATAACACAAAAAACTTATTTTTAAGTCCTTCGGCCTTCGCAAACA
AACAGCCCGGCCAACCCAAGTAATCCCCCATAACATCAATCAGTACCGCAAAAGGCTCAAAATCT
AAGTCTCCAGCAGCTGCGGAGCGGGGGATAAAGGAACAGCAGGATTACAACATTGCACAGGATCA
ATCAGAATGCGGGAGCGCAGAGCCTTTAAGAGATAGGGGGTGCGGGAGCATAATACTAAAGACTC
AAGATTCCCCCCGGTTTTTCATGCAGATTTGACCATGGTGTGCACCCCCCTTAACTTAACCCCTA
TTATGTAAGGGGGACCTTCGGCGGGATAAAAGAGAGTGCGGGAAAAGCAGCTACAGATACAGGAC
AAAAGAAGGAGTGGCGCACTTAAAGAGTAAAAAAGTACATCGTAG
Right flanking sequence: Indices 89705 -- 90204
TTTCCACCTTTCTGTCCAGCTGAAAAATGGAATGCAATAGTCTAAGATGCTTAATAGCTCCAACA
AGCGCGAAAGCCGTTGCTTCTTGCTTTCGAGCCCAAGCCTACGTTTGCTTAGTAAGGTTGCTTCT
TTTTATATCTCCTCAAAAAAGTAAAGGCGCGTTAGCGCTTTTTATTTATTTTCTTTTTCAATAAG
GGGCGGAGCTTGAAGAAGCGAGTCTATCAGAGAAAAAAGTGCTAGTTGTAGCGCGCTAGCGCACA
TTTGACTAAAAACATGGAAAGTCAAGGCTCTGGGCAACGAGTGGGAGGGAGCCTTGACTTGAAGC
ATTGTACAAGTGCTTAAGGCTCCTTCGGGCCATGGGCACAACTATCATATAAGGCAAGGCTTGGA
AGCAAGCTACCAGCGCCTATCGGCGGGAACTGGGCTTGTCTTGGTTAGTAGTGCCCGCCCATTCT
GTCTCGCCTGCCCGCCGACCCATGAATTCTTCAGAGCGGGCCGGC
Found at i:95757 original size:15 final size:15
Alignment explanation
Indices: 95737--95768 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
95727 TGCTTTATAT
95737 ATATATATAAAATAA
1 ATATATATAAAATAA
95752 ATATATATAAAATAA
1 ATATATATAAAATAA
95767 AT
1 AT
95769 TGGATTCTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (15 bp):
ATATATATAAAATAA
Left flanking sequence: Indices 95237 -- 95736
CTAATAGAGTCGTTAGTTCAGCAGCTCTCGGAGAGAATTCCATGATTCTACTGATTTTGGATATA
AGGGGGAATACCGCTTTCAATTTCAAAGAGCTCTATTTCCGCTATTCTTATAGATCAGATTCGAG
CTTGTACTACTAGAACTAGGAGTTGAGATAGCGCGCGGAACACCAACACAATCCTTTGTTAAATG
TCTGCGAGCTCCTTCTTCTTTCGTGAAAGCATACGAGTCGTTATGTTAAGCATCTAATCCTAGTC
TTTATGTTCTCTGTGTTAGAGGAGTTAGATGTCCCTCATGTTGAACAGTCTGACATCAAGTTGTT
AGGACCTGAGTCGCTATGCGAACACTTAACACAAGACTGAAATCAAGCTAGAGTGGTTTTTGAAT
CAGTCATCAAGGATCTTAGCCAAACGGTGACCGGCTACGTAAGCACTTTGGGCGCAGGTTTCTCG
ATCGGACTTGACGAATTGTCATAAAGACATCACTCTGCTTTATAT
Right flanking sequence: Indices 95769 -- 96268
TGGATTCTAAAATAAGATTCAATGAATTAGAAGCATTCGCAGTTTTCAGTTCGTTTGTCATCATC
TTTTCTCCTCATCGCTAGCCTGTTTCCAAGAGGGGGAAGAGAAGGTCTTTCAAGTTGGAGAGCAT
ATGAGATTTCTCCATCGCAGCATTGCATCTATCGACTGAACAAAGTAACTTTCGAAGTGGACTGG
GAAGGAATGCGAATAGGTATTTCAATTGTTGGACTAAATGAATAGGCAAGGAAGGCAAGGCACTT
GACTGAAAGGTCCTACCCGACTCATTCTTAGGACAGGCTTAGCTCTAGCTATCTAAAATGAAGAA
ATTGTACAAGGGATCAATCCTATTTCACAAAGTAACTTCTCAAAGGTCGAAGGCGTAGTATCGAT
TACTTGTGTTGGACTACCTTTATAGGATAGATCTGATATACTGTTAGGTTTTGGTTGGACTGCTT
GGTACGGAATTCACTGAGATTGACTTTAGATATCGCATTTCCGGT
Found at i:99560 original size:28 final size:22
Alignment explanation
Indices: 99483--99539 Score: 105
Period size: 22 Copynumber: 2.5 Consensus size: 22
99473 GGAGAAGTGA
99483 TACCTGTCGACCGTGAGGGAGAC
1 TACC-GTCGACCGTGAGGGAGAC
99506 TACCGTCGACCGTGAGGGAGAC
1 TACCGTCGACCGTGAGGGAGAC
99528 TACCGTCGACCG
1 TACCGTCGACCG
99540 ACCTTAGGAG
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 30 0.88
23 4 0.12
ACGTcount: A:0.21, C:0.30, G:0.33, T:0.16
Consensus pattern (22 bp):
TACCGTCGACCGTGAGGGAGAC
Left flanking sequence: Indices 98983 -- 99482
CGTGAACCAGAAAGAATGAGCCGCTTCAATACCAAAAGGAAGAAATCAGCACTTGCTTCTTGAGC
TGGTACAACAACTCCAGCAAGAAGGATTAGCCGATTAGAAGGCATGGCCAAGGGTACTACAAGCG
GAACCCCAGTCCCAAGCTATAGGACGACAGATGAATTAGGCGCTGACTCCAAGACTGATACGATA
GGCTTTGAGTCATCAGTTTGATCTCCTAGATGAGAGGGCTATGGGTATAGACCCGAAAGCACCTT
CACTGGCCATGGACTACTCAATCAATCGGACAACCGCTTCACTACTTCCAAGACTGAAAATCCAA
TGATAGAAGAATCGACTGCAGCAAAACTTCCTAAACTAGACTAGAATAATCTTTCGTAGCAGTCA
AGGATGAGTTCGATCCATTAGGTTCTTCGATTTGTTCAGAGGGAGTGGGAAAGCTACATAAATTC
TTTGGAAAAGCCTGCTTGGAAGCTCTCTTTTAGTCGGAGAAGTGA
Right flanking sequence: Indices 99540 -- 100039
ACCTTAGGAGGGAGACTACCGCCCCTGAGGGGCTTGTTGCTAGAGGCATCCCCTCAAATGAGATT
TATCAACTCTACAACAGCTCCGGTTTTAGCAATAAGAGCCCGCCTTCCGGGTCCTATATTCTAGT
TACTAGCTTCAAAGGAACTACTAAAAGAAGGAGTCAAAGCATCGGATAGTGCTACCTACGAGTGA
GTCACCCGCCTGGTTACCTGTCCTTATGAAGGAAGGTGCGCATGAAAGTCTTTACGGAAGACCAT
CAAATTACTGATTAGGAAGGTATTTAAGGAATGAACTTCTATTACAGGGATTCTTTTATTAAGAC
CTTTCGGATAGATAGCCCTATTGAATGAAGGTTGAACACCAACCCGCCTGGAAAGCTAAGAGTCG
GCAAAGACCTAGCTGTCGAGGAATGAAAGAAGTCGCTTTCTAGGAGAAGGAGTACGAGGAAGTCA
AGTCACAGGCAAGCAACCAACAGGCTAAGAGCTATCTCCCAACCT
Found at i:123684 original size:21 final size:21
Alignment explanation
Indices: 123660--123705 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
123650 GAACACTATA
123660 ATTCGATGAATGACTCAAATG
1 ATTCGATGAATGACTCAAATG
123681 ATTCGATGAATGACTCAAATG
1 ATTCGATGAATGACTCAAATG
123702 ATTC
1 ATTC
123706 CGGAAATACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.30
Consensus pattern (21 bp):
ATTCGATGAATGACTCAAATG
Left flanking sequence: Indices 123160 -- 123659
CCGGATCCACTAGATTTTAGTGTGCTGAAGAATTCTCTTCGTACTCCAATCCGTACGAAAGGCCC
CCTTTCTTTTGGCGGGTATCGCCACGTGGCTTAATCCCGGATCACTCCTTCAGGAATAGGACACA
ATAATATAGCGCACATCAGAGAAGAGAGTACCCCCTTTATTATAAGACAGGCCCCCCGCGTCCTT
TCTTAATAGATGGAGCAATCGTCACTCGACAGCTCGAAAGCGGATCAGTACAAACCCACGTGATC
CGTATTCGCTTACGTACCAGGCGTGCTTCGTCGTACCCTGACTACTCCTCTTTCACTGGCTTATT
TGTACCCAGCTACATGATGGCACTCCCCTCGGCCAATCCTCAATCGACAGCAACTCCGTCCTAGC
GAATCCATATCACCTGGGTCTCTTTCTCTTAGGTTGGTTTCAGCAGGAAATACAAAGAAAAGTAA
GTGGGTCCAGTCCACATCTTTTTTTCTTTAATAATGAACACTATA
Right flanking sequence: Indices 123706 -- 124205
CGGAAATACATCAATTTCTCCCTATAATATTGATACTTAGTATCACGATCAAGTTTACTAATTAC
CTTCGAAAAACATCTTTTTTTTTCATTTTTTCCTAAACTCTTATCAAAAGGTTCGCATAAGAAAT
TAACATAGTTCTCGTAAGAAGTCATTATGGTTTGAATCTTTTGTTCCCACGTATCCCTATCCTTT
TTCTTCTTTTTTTGTTTTTCTGGTATATTTTTATACAAGTATTTTTTCAGATCCTCCTGCTTGAT
TATACCTTTCCAGTTTTCTGTATCAATACCTTTTTCATCGTAAACAAATTCACCACCATCTAATC
ATTTTTCTTGATAATCAATCACATTGTGATAGATATACTCATTGATGATAGAAAGAGGATCCATT
TTACAAAATATATTGACATAAGTATCAGGCAGTTTCTTGCTATGATCAGCTGTAGTTATAAAGTT
GTCATGAACTGTGTATATGGGGGATCCCTGGTTAAGCATTTCCAA
Found at i:124806 original size:40 final size:41
Alignment explanation
Indices: 124742--124819 Score: 122
Period size: 40 Copynumber: 1.9 Consensus size: 41
124732 AAGAAACCTC
124742 CGTGGAAATGACTCCATTCAATACAGACA-AAGGTGGCTAG
1 CGTGGAAATGACTCCATTCAATACAGACAGAAGGTGGCTAG
* * *
124782 CGTGGAAATGACTCCTTTCTATACAGACAGATGGTGGC
1 CGTGGAAATGACTCCATTCAATACAGACAGAAGGTGGC
124820 ATTCAATACA
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
40 27 0.79
41 7 0.21
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.23
Consensus pattern (41 bp):
CGTGGAAATGACTCCATTCAATACAGACAGAAGGTGGCTAG
Left flanking sequence: Indices 124242 -- 124741
AATGAAATTGACGAAGGTAGATACTTGAGTCTTCCTTTTATCTCTAGTTTCCGAAGGGACTCTAA
GAGTAACCTGACGCCTCTTCTTGTGAATTCGATCATAAACCCATACATTGATAGGGTCTTTTTTC
ATATAATCCTGAACAGTTGTAAAGAAATCTGTTCTATATAGAACTTGAGGTACAAAGAGGATACC
TGTATATAGTAATAATAAATGGATTGATACTAAACCTATACATGTAGAAGATCTGTCTAACATAA
ACCCCCGCAGTGGCGAAAAAATTGTATTCTATCTAAGGAATGAAGTGAATCGTTATCAAAGTGAT
CATACCATTCTCTGTGAAAAAATCATACAGATGGAAAGACTTCTTTCAGATAAAGAGAATACTGA
AGAGATCACTAACCAGAATACCAATACTGATATGGAAACTAAGAAAACAAAGAATAAAAGAAAGC
CTCCAAGAAACACTAATACTAGCAAGAAAGCTAAGAAGAAACCTC
Right flanking sequence: Indices 124820 -- 125319
ATTCAATACAGACAGATGGTGGCTGGCGTGGATGAGTTTCTCTTATAGAATATCTAAAGCTCTGA
TCATGGATGCCAAAACTAAAGTACCACGAATCTCTTGGTGTGGCTTATCACTTCATTCCTTCTTA
AGCTGGAATAATGCCTACCGACGGCTAACCCTCTCTCATAGAATTGAGGCCTCTCCGTCGGTATT
TACCTTCTCAGGTCTGAGGTGGAAATCCTGATCAATTACCGTCCATTTCTCCACTCAACCATCGA
TTATCATAGTAGAAATCATTCTTCTTTTCGTGCAGATGAAGGGCTATGTAGGCACAAATTCTACT
TGGTGAGGGGACTAGGCAGGCAAGGTTGGATAGGACCTTGGCGAGCGATGAATGGGGGCACACTC
TTCCCTGATTTGGTCATCCATCATCTACCAAAGCGAAAATGAACCACCTATCAACTCTTACTTAC
TGTGAGGGTTTCCGGTGTGCTAGATTCAATTTTCCTGTTGCTGAT
Found at i:126033 original size:20 final size:20
Alignment explanation
Indices: 126005--126051 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
125995 TGAGAAGTAT
* *
126005 ATCCGTAGCTCTGTACAGCA
1 ATCCTTAGCTCAGTACAGCA
126025 ATCCTTAGCTCAGTACAGCA
1 ATCCTTAGCTCAGTACAGCA
126045 ATCCTTA
1 ATCCTTA
126052 CTTGCTTCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.28
Consensus pattern (20 bp):
ATCCTTAGCTCAGTACAGCA
Left flanking sequence: Indices 125505 -- 126004
TCCCCTGTAGCTATGCCGGATACGTTCCCTGCACTTTGATAACCTAGTACTTATGTCAAGAAGAT
TGAATGCGTAATAGCACGCTCAGATCTGTCAGAAAGCCTAGGTACCACAACAATGCAGACAGAGA
GACGATCTTAAGAGCATTTAGCTTTTTTCTATCAACTCATACCTCGAGCCAATGTTCGAGTACCA
GGCGCTGAAGTAACCCATGCCATACTCCCAGGAAAAGCTCGAACGGCCTTCAACAAAGGGAACCT
GTACCCGAAAGCGACACAGGGTTGTAAACCGTACTTGAGGTAGACACCCTTTGCCCCATATGGGT
GATGAGAGTTCTAACAAGCCTTTGCAGAGACAGGGTAAGAAATCCTTAGTCAAGCCCTTCACTAG
CCTCTGGCTTTCCAACTATCTTACCTATTCTAGCCTTTTTTCGTAGAAGTTTATCCACCAAAGGT
ACGTTGTCACTAGAGCGAAGCAATAGGTAAAGTGCTGAGAAGTAT
Right flanking sequence: Indices 126052 -- 126551
CTTGCTTCTTTGCCGTCGAAGTGTCCCGCTATTACACAGGAGATCTCGAGTAAAGGTAGGCCCGG
TGCTCCTTCCCTTGCCAGTCCTAGCGGGGTTATCAGGTACTCTGAACCCTCAACCTTTCTCCCAA
GCATCTTGGTTTCCCTCAAAGTACAGCTAAATAACTAAAGCCTCTTTCGCTTTTTTTACTCTTCC
TTGCTGAAGTGAGTCTATTTTATTCCGTATCCCATAGATTGTCCCGCAATCTCTTCCAAGCCGAT
GTGAGATCACTTTACCCTCCGGAACCAATGCTAAATGTCCAGGGAGTCTCTCCCATGACCGGTGA
GCTATCCAACCCACGCAGAACCAGCACCTCATTGCTTTCGGGTCTTTAGAGCAGATTCCTGAAGA
ATAACAAGCAAGAATATGGTACAGGTGAAAGCGCGGAGTGGATCGTTCCACTTTGTAACCCAAGT
TGTGGGATCGTTTCTCTATGGCAACGGACAGCTTCGAATGGACCT
Found at i:126876 original size:24 final size:24
Alignment explanation
Indices: 126849--126896 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
126839 GATGGCTATG
126849 CGCTACACCTTGGTAAGACTATAA
1 CGCTACACCTTGGTAAGACTATAA
126873 CGCTACACCTTGGTAAGACTATAA
1 CGCTACACCTTGGTAAGACTATAA
126897 GCGGAAACTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (24 bp):
CGCTACACCTTGGTAAGACTATAA
Left flanking sequence: Indices 126349 -- 126848
TCCAGGGAGTCTCTCCCATGACCGGTGAGCTATCCAACCCACGCAGAACCAGCACCTCATTGCTT
TCGGGTCTTTAGAGCAGATTCCTGAAGAATAACAAGCAAGAATATGGTACAGGTGAAAGCGCGGA
GTGGATCGTTCCACTTTGTAACCCAAGTTGTGGGATCGTTTCTCTATGGCAACGGACAGCTTCGA
ATGGACCTGGAAAGATCAGCTCTTCTTCAAGGTGTGAGGGAGCAAAACAAAAGAGAATAATTCAA
GGGAATGAGTCAGCATCTAGTAACTGCTAGGATAGCTAGCAAAAAACAATTGAGGATGGGTAGTA
ACCAGAGCATGAGTAAACACGGTCTAGCAGGCTTGCTAACATCTTGTTTCCATCCTCTTATCTTC
CGGTGTCTAGTTCCATTGGATTCTTGGTTGATAGGGTTTTCATAGGAGGGGGATAGGTTGCATTC
CTATACAACAGCTTAACAGCCTTCGCATACAAGTAGATGGCTATG
Right flanking sequence: Indices 126897 -- 127396
GCGGAAACTAATAAGATTCGTTTTCATCAACCTATTCTATTATTCACGGTAAGTCTTCGAACAAC
AACCATCTCAGCGGTGACACACGAATTAGGTAAAGAGCTTTGAAAAGCGATTACTTAATTCCTCT
TCCCTGCTAGTATCCCAGCCCACCTATTAAGGTTAAATTGGAACGGAACTGAAAGAAAGACAGCT
GGTGAATATAGGTCTACTTTTTTTCAGCTGGCAACCCCTGCTTTCAAAAGGAATGCGCTGTGAGG
GAGAAGACAGCAAGCTACTGACATTGTGAATGTCCGAGGAGTTAATAAGTGCCTCACTTTACAGT
AAAGGAAAGGTATAAAGTTTTCCATTGTCCTAGGGATTCGTATTTCCCATTGTCCTTATGGATGA
GGGAATCGAGTTGCGAAAGATGAGGGAATCTACTTGAGTCCCCCTAAAAGCAGGGTATTATTCCT
ATTTTCCCTCTTCCTCCAGCTATCAACAGGATAGAGTGGAGCCTC
Found at i:149974 original size:18 final size:18
Alignment explanation
Indices: 149942--149981 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
149932 CTGGTCGAAT
*
149942 TCAAGGATTCCAATCAGC
1 TCAAGGATTACAATCAGC
* *
149960 TCAAGGATTAGAATCAGT
1 TCAAGGATTACAATCAGC
149978 TCAA
1 TCAA
149982 CACTGCAGTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (18 bp):
TCAAGGATTACAATCAGC
Left flanking sequence: Indices 149442 -- 149941
TTGCCTGTAGGCTGATCTCCATATGGATGCGCGAGTGAAGGCCTTTCCTCAACTTCAACTGTTTT
GTTTGGGACGCTCCGGCACATTAAATGCGAGAAGTGCGCTATTTCCCAATCCAAATAGTCAAAAC
TCACGTAATCGTAATAAGAAGAGTTTCTCCCTTTTTCTTCTGTAAAATCCGAAGCAGCTACGCCT
ATTGAAAGAAGAAATCTTCCCCCGTCCTTTAACCTGGACTCCATTCTTCCTCTAGAAGGATAATG
GGATCCAGACTATAATCAAGCTATGATCGTCAAATTTCATATAGAAAGATCAGGTTATTGCTGAT
CATCTGGTCTATCGCTCCTTTTGAGAGTGACATAAGCCTTTCCCCTGCAGTGAAGTTTCTTCCTT
CCCTGACTTACTTGAAAAAAGGCTTTTCTTTTCCTCCGCTCGTAGGAAGCTAGGCACAAGACGCA
GACGATCAGACGAAAAATGAGATGATACCTATTCCCTGGTCGAAT
Right flanking sequence: Indices 149982 -- 150481
CACTGCAGTCCATGTGAGGCTAGATCTTCAAAGAGGGTCATCTCTAGCTAGCGCTCAAGATCGAT
TCAATTCCATTCAAAATCTCGAGTATCGAGCAGATCATGTAAACCACCCTTATAATCAGAAGCAC
ACGCCTGAAAAGGGCCTCGAACACTCATTTTAAGCAACTCTTGCCTGAGACAGCTAAACCTGGAT
TGGGCTCTTTTAACCTCTCCTTTTCAAAGGCCTTCCAGAAACCCGTAATGGATTAGCTGAACTGA
GGAACCACAGCCTAGCGTTTAATTGGAATCGTTAACTTCATTGTTGCCTTCGACCAAGGGATAGT
TTTGCAATTCTCAGTAAAGGTTACTAAAGCCAAAACCTCATTGGTGGTCTCTGACATCAAAAAAA
ATACGTGGACATCTAAGAACGTCGATTTCAGATTAGTCAACTTTCATTGAAAGAAAGAACCGAGA
CAGCAGACAAGAGCCTTCTTGGCAAGCCCGATCACGGTTTGACTT
Found at i:158892 original size:27 final size:27
Alignment explanation
Indices: 158854--158905 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
158844 ACTTGTCAAT
*
158854 AAACAATTCTATGTTCAATTTGACTAC
1 AAACAATTCTATGTTCAACTTGACTAC
*
158881 AAACAATTCTATGTTCCACTTGACT
1 AAACAATTCTATGTTCAACTTGACT
158906 CCTACCCATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.35, C:0.21, G:0.08, T:0.37
Consensus pattern (27 bp):
AAACAATTCTATGTTCAACTTGACTAC
Left flanking sequence: Indices 158354 -- 158853
AGCAGTAACGCTCATAGCAAGCAAGAAAGATGGGGTAAAGGGGCGAAACGGCGGGAAATAAAAGT
TCAGTTTATAGAGTCGGAGAGCTAGTAGAGCTCATAGGTTTCTACCTGTGACTAACTTAGTGTGC
TTTTGGTAGCAGCAGCCATACCAACAATCTATCTTTCGTAAATAAGCACTCACATTACGGTGCGA
GATCTGCCAAGCTAAGCTCAATCACAACCCACCGGCGAGTGAGGGCTAAACGGTATTTATAGATT
GAAACTAGAAAACCTTCATTCCTGAACTAGCCTCATGAACAAGCCAGTCTCAACTTTCCTGTTCA
ACTTTCTAGTGCGTCTATCTAAGGATAGATCTCGGTATCTGTGGAGAGGAAAAGAATGAATCCTA
CTAATGCGTCAAAATCTAAAAAAATTGATTTGTATTCCCCTTTCTTTACAGGTCTCGTGTTCCCC
CTATTGAACGAAATGCAAAAACCACATACCCACAAACTTGTCAAT
Right flanking sequence: Indices 158906 -- 159405
CCTACCCATACCGTGTTCAATTGTACAACTACCAATTCAATCTTGAGATTTAGTAAGAATAGCAG
ACGGTATACTAGTCAGGACTCTTCTTTTCTACGAACAAGTCAGTACTCGCACTATTGGGAGAACA
TGCGTCAAAGAAGGTCGTTTTCTTTTCCGTCCTCGCACTATTGTACGAATTTCTCCCTGTACCTA
AAAAGTCTTTATTTCACGCTGGAGCATTTGTAAGCGACGGGATCTTAGCAGCTTCTTCCCGAGTT
GCATTAGCTAAAGTGGATCTACGATCACGGGAACTAATCAATCGGTCTGTTCTGCCCCATAAGCA
TCTGGATGGTCTACGATCAGTGCTATTCGTACACCCTATGCCTGATTTCGCAACTTCAACCCTTT
CCCTATCCAATGTAGCTGTAACTGCGCCTTATTGGCTTCTTTTCAGTTAACAAGCAAGTACGCAA
ACAGCCTTCGGTTCCTAACAAGCTAAGCACCTACCCGGGGAACTA
Found at i:194507 original size:12 final size:12
Alignment explanation
Indices: 194490--194514 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
194480 GTTTCTTTAC
194490 ATCTAGTGAATG
1 ATCTAGTGAATG
194502 ATCTAGTGAATG
1 ATCTAGTGAATG
194514 A
1 A
194515 AGGTCGCATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.36, C:0.08, G:0.24, T:0.32
Consensus pattern (12 bp):
ATCTAGTGAATG
Left flanking sequence: Indices 193990 -- 194489
ACACAATGAGGATTCCCCGCCTGAAAAAAAATAGGAAAGCTCCTTTCCTTAAGGGCCTTTCATCA
GAGTCCCTTCTTTTACCGGGTATTTATTCTACATCCATTTCAGGTCACACATGGCTAAGCTCCTG
CGACAGGGAGAGGTAAAAAGGCATAGCATAGCTTTCAGGGAAACTCCTTCAGATGTATTGGAAAT
GGAAATACAGATCAAATACCTTCTGAGGTGGTGTTCCCTACATACAGTCATACAGTACGGAGGGG
AAGAGAAGAAGGGCTGGGCTAGGCACATAAGGTGGGGTTAATTGTCTTACAGGCAAGCTCTCGGG
CTTCTAGTACCGATTTATAAGCCACTGCTTACTTCGACGTTTTTCCATTTCCCATAGAATCCTCC
CTCCAAATGGCACTTGTTCATGCGTCTGTCGCCGTAGCAGCTAAAATAACGGAGGAAGGAGGAGG
GGGAAAAGTGGGTATGTGGCTTTCCCCTTAGGAAGGTTTCTTTAC
Right flanking sequence: Indices 194515 -- 195014
AGGTCGCATATGCGCTGCAAGACTCGTCTGTTATAGAATTCGCTGCTATTGAACTAAACGAAGGG
GAGATAAATAGCATATTAAAAGGGCAAGCAAGACGCCGCAGATAAGAGAAGACAGGAAAGATCAG
AAGCAAGAAATGCCCTGGTTTCAGGAATAATTTGATGTGCACAGAGGACTCATCTTTCAACAGCA
TGTCCGAAAGGACGTTCATTCAACGGCATTAGCGGTCTAGCCTCTTCGGAAGCAGAGCATAGGAT
AGGCTGCTGGTAAGACCAATAGGCTATTAGATGGGATAGGGAGGCCGGTAATCCTTTGTCCAAGA
TCCTCTCGGACTGTTGAATAAAGGCAGGGAAAAAGCTTTCACCAGGTCCAGGAATCGGTATTAGC
TCTGTTTTCGCTGTTCTAGAGTCGGTAGTTTTAATTGCTCGTGTTGAATCAGCCGGGAGATTCGG
ATGAAAGGTTCTCGAAATGGAAGCTCTGTACCAAGGGTAGAGGAG
Found at i:206791 original size:7 final size:7
Alignment explanation
Indices: 206779--206816 Score: 62
Period size: 7 Copynumber: 5.7 Consensus size: 7
206769 CTATTATATT
206779 AAAGAAA
1 AAAGAAA
206786 AAAG-AA
1 AAAGAAA
206792 AAAGAAA
1 AAAGAAA
206799 AAAGAAA
1 AAAGAAA
206806 AAA-AAA
1 AAAGAAA
206812 AAAGA
1 AAAGA
206817 GAAGAAAGGC
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
6 12 0.41
7 17 0.59
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (7 bp):
AAAGAAA
Left flanking sequence: Indices 206279 -- 206778
TTATAGTCGACGGGCCTCTAGCGATGATCGGACCCAGATAATCAATGTATTCATCGTGCCCCCCC
TGGGTTCGGTGAAAGAATTGAATTTCCCGATGAGGTAGCCTGCTGGGACTTTGCTAGAAAAGGGA
TTAGCGGCTTAATGCATGGATTTGAGCTGTGAAAGGCCTTTGTAAGTGGCTTGCTCATGCCTTCC
CGCCTTACTATGTCAAAGAGCCAAAAATGCACTCAATGAAGGCCACGATCAATAGTAGGGGTTTC
TCTCTCAATTAACAAGCCCAGGGATCACAGACGAGATCTAACCTAGTGGTTTCGCTTTAATTCAT
TAACTATACGAAGATCTTATTTCTTACCTACTAGATCGATTGAAAGAAGCCTTCGGGTTACAGTC
AACTCATAAAATACTCTCCTAAGGAGATATTCTTTCTATCCATAAACAGAAAGGGGGAGAGATTC
CTGCTTGCCTACTTCGCGGATCGAAGGGAGAAGACCTATTATATT
Right flanking sequence: Indices 206817 -- 207316
GAAGAAAGGCTTTCGTCGTCTTTTTCCCGCTTTCACCTTCGATTGCGAAGGGCTTTTTTCCCGGT
TTTCAATTCCTCTCCGGCGAGGTTTGAACTTCGCGTGGTGGGAAGGCCTTCCCGATTCGCATCTT
CCCGTCCAGCAAAGAAAGTGAAGGGGAGCGGACAGCGAGTTGGAGGACGCTGCAGAACCGCGTGA
TTGATCCATCTGCGCTATTCCCTAATTGAAGAAAGTTGTAAAGCCTTCAGAGCCTCAGTCCCTAC
CATTTTTTTTAAGAAAATGAAAGCTGACTAGCAATCGCTCGTTTTTCTTATTAGCATGGGATTGG
ATGTTAATAATGAAATAAAAACATATATATATATTAGAAGAGAAGGCAATCCCCGTGGAATTCCT
ATCGATTTCCGATGGATAACAATCCATCTTTCTCGCTTTCGCTCTTTCTCCCAATCAGTCGCGAG
GGTTCCGGGCATGAGAACGCAAGTGCCGGAATCAAACAAAAGGTC
Found at i:206797 original size:13 final size:13
Alignment explanation
Indices: 206779--206816 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
206769 CTATTATATT
206779 AAAGAAAAAAGAA
1 AAAGAAAAAAGAA
206792 AAAGAAAAAAGAA
1 AAAGAAAAAAGAA
*
206805 AAAAAAAAAAGA
1 AAAGAAAAAAGA
206817 GAAGAAAGGC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (13 bp):
AAAGAAAAAAGAA
Left flanking sequence: Indices 206279 -- 206778
TTATAGTCGACGGGCCTCTAGCGATGATCGGACCCAGATAATCAATGTATTCATCGTGCCCCCCC
TGGGTTCGGTGAAAGAATTGAATTTCCCGATGAGGTAGCCTGCTGGGACTTTGCTAGAAAAGGGA
TTAGCGGCTTAATGCATGGATTTGAGCTGTGAAAGGCCTTTGTAAGTGGCTTGCTCATGCCTTCC
CGCCTTACTATGTCAAAGAGCCAAAAATGCACTCAATGAAGGCCACGATCAATAGTAGGGGTTTC
TCTCTCAATTAACAAGCCCAGGGATCACAGACGAGATCTAACCTAGTGGTTTCGCTTTAATTCAT
TAACTATACGAAGATCTTATTTCTTACCTACTAGATCGATTGAAAGAAGCCTTCGGGTTACAGTC
AACTCATAAAATACTCTCCTAAGGAGATATTCTTTCTATCCATAAACAGAAAGGGGGAGAGATTC
CTGCTTGCCTACTTCGCGGATCGAAGGGAGAAGACCTATTATATT
Right flanking sequence: Indices 206817 -- 207316
GAAGAAAGGCTTTCGTCGTCTTTTTCCCGCTTTCACCTTCGATTGCGAAGGGCTTTTTTCCCGGT
TTTCAATTCCTCTCCGGCGAGGTTTGAACTTCGCGTGGTGGGAAGGCCTTCCCGATTCGCATCTT
CCCGTCCAGCAAAGAAAGTGAAGGGGAGCGGACAGCGAGTTGGAGGACGCTGCAGAACCGCGTGA
TTGATCCATCTGCGCTATTCCCTAATTGAAGAAAGTTGTAAAGCCTTCAGAGCCTCAGTCCCTAC
CATTTTTTTTAAGAAAATGAAAGCTGACTAGCAATCGCTCGTTTTTCTTATTAGCATGGGATTGG
ATGTTAATAATGAAATAAAAACATATATATATATTAGAAGAGAAGGCAATCCCCGTGGAATTCCT
ATCGATTTCCGATGGATAACAATCCATCTTTCTCGCTTTCGCTCTTTCTCCCAATCAGTCGCGAG
GGTTCCGGGCATGAGAACGCAAGTGCCGGAATCAAACAAAAGGTC
Found at i:206804 original size:20 final size:20
Alignment explanation
Indices: 206779--206816 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
206769 CTATTATATT
*
206779 AAAGAAAAAAGAAAAAGAAA
1 AAAGAAAAAAAAAAAAGAAA
206799 AAAGAAAAAAAAAAAAGA
1 AAAGAAAAAAAAAAAAGA
206817 GAAGAAAGGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (20 bp):
AAAGAAAAAAAAAAAAGAAA
Left flanking sequence: Indices 206279 -- 206778
TTATAGTCGACGGGCCTCTAGCGATGATCGGACCCAGATAATCAATGTATTCATCGTGCCCCCCC
TGGGTTCGGTGAAAGAATTGAATTTCCCGATGAGGTAGCCTGCTGGGACTTTGCTAGAAAAGGGA
TTAGCGGCTTAATGCATGGATTTGAGCTGTGAAAGGCCTTTGTAAGTGGCTTGCTCATGCCTTCC
CGCCTTACTATGTCAAAGAGCCAAAAATGCACTCAATGAAGGCCACGATCAATAGTAGGGGTTTC
TCTCTCAATTAACAAGCCCAGGGATCACAGACGAGATCTAACCTAGTGGTTTCGCTTTAATTCAT
TAACTATACGAAGATCTTATTTCTTACCTACTAGATCGATTGAAAGAAGCCTTCGGGTTACAGTC
AACTCATAAAATACTCTCCTAAGGAGATATTCTTTCTATCCATAAACAGAAAGGGGGAGAGATTC
CTGCTTGCCTACTTCGCGGATCGAAGGGAGAAGACCTATTATATT
Right flanking sequence: Indices 206817 -- 207316
GAAGAAAGGCTTTCGTCGTCTTTTTCCCGCTTTCACCTTCGATTGCGAAGGGCTTTTTTCCCGGT
TTTCAATTCCTCTCCGGCGAGGTTTGAACTTCGCGTGGTGGGAAGGCCTTCCCGATTCGCATCTT
CCCGTCCAGCAAAGAAAGTGAAGGGGAGCGGACAGCGAGTTGGAGGACGCTGCAGAACCGCGTGA
TTGATCCATCTGCGCTATTCCCTAATTGAAGAAAGTTGTAAAGCCTTCAGAGCCTCAGTCCCTAC
CATTTTTTTTAAGAAAATGAAAGCTGACTAGCAATCGCTCGTTTTTCTTATTAGCATGGGATTGG
ATGTTAATAATGAAATAAAAACATATATATATATTAGAAGAGAAGGCAATCCCCGTGGAATTCCT
ATCGATTTCCGATGGATAACAATCCATCTTTCTCGCTTTCGCTCTTTCTCCCAATCAGTCGCGAG
GGTTCCGGGCATGAGAACGCAAGTGCCGGAATCAAACAAAAGGTC
Found at i:211577 original size:1 final size:1
Alignment explanation
Indices: 211571--211680 Score: 130
Period size: 1 Copynumber: 110.0 Consensus size: 1
211561 TCTTTATTTC
* * * *
211571 TTTTTTTCTTTCTTTTTTTTTGTTTTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * * *
211636 TTATTTTTTTATTTTCTTTTTTTTCTTTTTTTTGTTTTTGTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
211681 CATTATTCTT
Statistics
Matches: 89, Mismatches: 20, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
1 89 1.00
ACGTcount: A:0.03, C:0.04, G:0.03, T:0.91
Consensus pattern (1 bp):
T
Left flanking sequence: Indices 211071 -- 211570
TGTATGTGAGGGTGACGAACTCCGGTCATAGGTTGGTCCAAAGAACGAGAGTCGGCTTCCTTAAG
TCCGTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCAA
ATCCTACTTGGGGAGAATTTAGAGTTCTCGCTTTTCTGACCTAGCGCCCCCTGTCCTTCTCCTTA
GTTTCTAAACTAGCAGAATCGCAGGACATCAAAAGTGGGAAGTTTCTTGTTGGTTTTTCTTCCTC
ACTCTCGAATAGGTGAACTTGGTTCGTTCAATTCTTAGGGAGAAGAAGGATGGGAATGAATGGGA
AGACTGGAGTAGTCTCTTCATTAGCCGGAAGGAATTAGTCTCCACTAGCCTCATTCGAAGAACGA
ATAAGAAAAGGCTTACTGTTTAGGTAGGATAGATCGATGTGGTCCAATGGCTAAAGCTCTGCCAG
CTTCTTGTAGACTTACTTCTCTTTAGGCTCCGAGTTCTTTATTTC
Right flanking sequence: Indices 211681 -- 212180
CATTATTCTTCGCCACTAGTGGCAACGAAGTTCTTGGTAATTAGCAAGGGGGAAGGAAGATCTCC
ACTCATTTCATTCATTCAGTACCTGCGGTGAGGCGCGACCCACAACAAACGAAGGGGGAAAGCTT
GCTTTGCTTGGCTTGCTGTAGCCCTATTTTTAGGCTTGGTAAGCGTAAGCTATTGTTGTAGGCTC
GAGAAGGGTAGGCTCGCAGCTTCGCTCAGCAGAAGAGCCTGACTTTCTATTAGTCAAGCGCTAGC
GCCCAACCGGGCTTTGAAGGGATAGGGAAAGGGAAGAAAAGAAAGAGGGTCACTCCTTTTAGGAA
CATGGCTCGTTCATTCACTTGCTCATGAACTCGCAGCTTCGCCAGAAGCTACGAAGGGGGGCCTC
GCCCCGGGAAGGGGAGAGTGGCCGAGTGGTTAAAAGCGACAGACTGTAAATCTGTTGAAGTTTTT
CTACGTAGGTTCGAATCCTGCCTCTCCCACTTGTTGTAGACTTCA
Found at i:211624 original size:47 final size:49
Alignment explanation
Indices: 211560--211674 Score: 155
Period size: 47 Copynumber: 2.3 Consensus size: 49
211550 AGGCTCCGAG
211560 TTCTTTATTTCTTTTTTTCTTTCTTTTTTTTT-GTTTTTTATTTT-TTTTTT
1 TTCTTT-TTT-TTTTTTT-TTTCTTTTTTTTTAGTTTTTTATTTTCTTTTTT
* *
211610 TT-TTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTATTTTCTTTTTT
1 TTCTTTTTTTTTTTTTTTTCTTTTTTTTTAGTTTTTTATTTTCTTTTTT
*
211658 TTCTTTTTTTTGTTTTT
1 TTCTTTTTTTTTTTTTT
211675 GTTTTTCATT
Statistics
Matches: 59, Mismatches: 3, Indels: 7
0.86 0.04 0.10
Matches are distributed among these distances:
46 12 0.20
47 18 0.31
48 11 0.19
49 16 0.27
50 2 0.03
ACGTcount: A:0.03, C:0.05, G:0.02, T:0.90
Consensus pattern (49 bp):
TTCTTTTTTTTTTTTTTTTCTTTTTTTTTAGTTTTTTATTTTCTTTTTT
Left flanking sequence: Indices 211060 -- 211559
CTTTTTCCCGGTGTATGTGAGGGTGACGAACTCCGGTCATAGGTTGGTCCAAAGAACGAGAGTCG
GCTTCCTTAAGTCCGTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGT
CGTAGGTTCAAATCCTACTTGGGGAGAATTTAGAGTTCTCGCTTTTCTGACCTAGCGCCCCCTGT
CCTTCTCCTTAGTTTCTAAACTAGCAGAATCGCAGGACATCAAAAGTGGGAAGTTTCTTGTTGGT
TTTTCTTCCTCACTCTCGAATAGGTGAACTTGGTTCGTTCAATTCTTAGGGAGAAGAAGGATGGG
AATGAATGGGAAGACTGGAGTAGTCTCTTCATTAGCCGGAAGGAATTAGTCTCCACTAGCCTCAT
TCGAAGAACGAATAAGAAAAGGCTTACTGTTTAGGTAGGATAGATCGATGTGGTCCAATGGCTAA
AGCTCTGCCAGCTTCTTGTAGACTTACTTCTCTTTAGGCTCCGAG
Right flanking sequence: Indices 211675 -- 212174
GTTTTTCATTATTCTTCGCCACTAGTGGCAACGAAGTTCTTGGTAATTAGCAAGGGGGAAGGAAG
ATCTCCACTCATTTCATTCATTCAGTACCTGCGGTGAGGCGCGACCCACAACAAACGAAGGGGGA
AAGCTTGCTTTGCTTGGCTTGCTGTAGCCCTATTTTTAGGCTTGGTAAGCGTAAGCTATTGTTGT
AGGCTCGAGAAGGGTAGGCTCGCAGCTTCGCTCAGCAGAAGAGCCTGACTTTCTATTAGTCAAGC
GCTAGCGCCCAACCGGGCTTTGAAGGGATAGGGAAAGGGAAGAAAAGAAAGAGGGTCACTCCTTT
TAGGAACATGGCTCGTTCATTCACTTGCTCATGAACTCGCAGCTTCGCCAGAAGCTACGAAGGGG
GGCCTCGCCCCGGGAAGGGGAGAGTGGCCGAGTGGTTAAAAGCGACAGACTGTAAATCTGTTGAA
GTTTTTCTACGTAGGTTCGAATCCTGCCTCTCCCACTTGTTGTAG
Found at i:211626 original size:39 final size:42
Alignment explanation
Indices: 211563--211680 Score: 172
Period size: 40 Copynumber: 2.9 Consensus size: 42
211553 CTCCGAGTTC
* *
211563 TTTA-TTTCTTTTTTTCTTTCTTTTTTTTTGTTTTTTATTTT
1 TTTATTTTCTTTTTTTTTTTTTTTTTTTTTGTTTTTTATTTT
211604 TTT-TTTT-TTTTTTTTTTTTTTTTTTTTT-TTTTTTATTTT
1 TTTATTTTCTTTTTTTTTTTTTTTTTTTTTGTTTTTTATTTT
211643 TTTATTTTCTTTTTTTTCTTTTTTTTGTTTTTGTTTTT
1 TTTATTTTCTTTTTTTT-TTTTTTTT-TTTTTGTTTTT
211681 CATTATTCTT
Statistics
Matches: 69, Mismatches: 2, Indels: 9
0.86 0.03 0.11
Matches are distributed among these distances:
39 14 0.20
40 23 0.33
41 14 0.20
42 8 0.12
43 5 0.07
44 5 0.07
ACGTcount: A:0.03, C:0.04, G:0.03, T:0.90
Consensus pattern (42 bp):
TTTATTTTCTTTTTTTTTTTTTTTTTTTTTGTTTTTTATTTT
Left flanking sequence: Indices 211063 -- 211562
TTTCCCGGTGTATGTGAGGGTGACGAACTCCGGTCATAGGTTGGTCCAAAGAACGAGAGTCGGCT
TCCTTAAGTCCGTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGT
AGGTTCAAATCCTACTTGGGGAGAATTTAGAGTTCTCGCTTTTCTGACCTAGCGCCCCCTGTCCT
TCTCCTTAGTTTCTAAACTAGCAGAATCGCAGGACATCAAAAGTGGGAAGTTTCTTGTTGGTTTT
TCTTCCTCACTCTCGAATAGGTGAACTTGGTTCGTTCAATTCTTAGGGAGAAGAAGGATGGGAAT
GAATGGGAAGACTGGAGTAGTCTCTTCATTAGCCGGAAGGAATTAGTCTCCACTAGCCTCATTCG
AAGAACGAATAAGAAAAGGCTTACTGTTTAGGTAGGATAGATCGATGTGGTCCAATGGCTAAAGC
TCTGCCAGCTTCTTGTAGACTTACTTCTCTTTAGGCTCCGAGTTC
Right flanking sequence: Indices 211681 -- 212180
CATTATTCTTCGCCACTAGTGGCAACGAAGTTCTTGGTAATTAGCAAGGGGGAAGGAAGATCTCC
ACTCATTTCATTCATTCAGTACCTGCGGTGAGGCGCGACCCACAACAAACGAAGGGGGAAAGCTT
GCTTTGCTTGGCTTGCTGTAGCCCTATTTTTAGGCTTGGTAAGCGTAAGCTATTGTTGTAGGCTC
GAGAAGGGTAGGCTCGCAGCTTCGCTCAGCAGAAGAGCCTGACTTTCTATTAGTCAAGCGCTAGC
GCCCAACCGGGCTTTGAAGGGATAGGGAAAGGGAAGAAAAGAAAGAGGGTCACTCCTTTTAGGAA
CATGGCTCGTTCATTCACTTGCTCATGAACTCGCAGCTTCGCCAGAAGCTACGAAGGGGGGCCTC
GCCCCGGGAAGGGGAGAGTGGCCGAGTGGTTAAAAGCGACAGACTGTAAATCTGTTGAAGTTTTT
CTACGTAGGTTCGAATCCTGCCTCTCCCACTTGTTGTAGACTTCA
Found at i:211687 original size:39 final size:35
Alignment explanation
Indices: 211563--211690 Score: 138
Period size: 33 Copynumber: 3.7 Consensus size: 35
211553 CTCCGAGTTC
* * *
211563 TTTA-TTTCTTTTTTT-CTTTCTTTTTTTTTGTTT
1 TTTATTTTTTTTTTTTATTTTCTTTTTTTTTTTTT
211596 TTTATTTTTTTTTTTT-TTTT-TTTTTTTTTTTTT
1 TTTATTTTTTTTTTTTATTTTCTTTTTTTTTTTTT
*
211629 TTTTTTTTTATTTTTTTATTTTCTTTTTTTTCTTTTT
1 TTTATTTTT-TTTTTTTATTTTCTTTTTTTT-TTTTT
* * *
211666 TTTGTTTTTGTTTTTCATTATTCTT
1 TTTATTTTTTTTTTTTATT-TTCTT
211691 CGCCACTAGT
Statistics
Matches: 82, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
33 24 0.29
34 20 0.24
35 4 0.05
36 16 0.20
37 18 0.22
ACGTcount: A:0.05, C:0.05, G:0.02, T:0.88
Consensus pattern (35 bp):
TTTATTTTTTTTTTTTATTTTCTTTTTTTTTTTTT
Left flanking sequence: Indices 211063 -- 211562
TTTCCCGGTGTATGTGAGGGTGACGAACTCCGGTCATAGGTTGGTCCAAAGAACGAGAGTCGGCT
TCCTTAAGTCCGTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGT
AGGTTCAAATCCTACTTGGGGAGAATTTAGAGTTCTCGCTTTTCTGACCTAGCGCCCCCTGTCCT
TCTCCTTAGTTTCTAAACTAGCAGAATCGCAGGACATCAAAAGTGGGAAGTTTCTTGTTGGTTTT
TCTTCCTCACTCTCGAATAGGTGAACTTGGTTCGTTCAATTCTTAGGGAGAAGAAGGATGGGAAT
GAATGGGAAGACTGGAGTAGTCTCTTCATTAGCCGGAAGGAATTAGTCTCCACTAGCCTCATTCG
AAGAACGAATAAGAAAAGGCTTACTGTTTAGGTAGGATAGATCGATGTGGTCCAATGGCTAAAGC
TCTGCCAGCTTCTTGTAGACTTACTTCTCTTTAGGCTCCGAGTTC
Right flanking sequence: Indices 211691 -- 212190
CGCCACTAGTGGCAACGAAGTTCTTGGTAATTAGCAAGGGGGAAGGAAGATCTCCACTCATTTCA
TTCATTCAGTACCTGCGGTGAGGCGCGACCCACAACAAACGAAGGGGGAAAGCTTGCTTTGCTTG
GCTTGCTGTAGCCCTATTTTTAGGCTTGGTAAGCGTAAGCTATTGTTGTAGGCTCGAGAAGGGTA
GGCTCGCAGCTTCGCTCAGCAGAAGAGCCTGACTTTCTATTAGTCAAGCGCTAGCGCCCAACCGG
GCTTTGAAGGGATAGGGAAAGGGAAGAAAAGAAAGAGGGTCACTCCTTTTAGGAACATGGCTCGT
TCATTCACTTGCTCATGAACTCGCAGCTTCGCCAGAAGCTACGAAGGGGGGCCTCGCCCCGGGAA
GGGGAGAGTGGCCGAGTGGTTAAAAGCGACAGACTGTAAATCTGTTGAAGTTTTTCTACGTAGGT
TCGAATCCTGCCTCTCCCACTTGTTGTAGACTTCAGAGAAGAGAA
Found at i:220792 original size:21 final size:21
Alignment explanation
Indices: 220768--220813 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
220758 GAACACTATA
220768 ATTCGATGAATGACTCAAATG
1 ATTCGATGAATGACTCAAATG
220789 ATTCGATGAATGACTCAAATG
1 ATTCGATGAATGACTCAAATG
220810 ATTC
1 ATTC
220814 CGGAAATACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.30
Consensus pattern (21 bp):
ATTCGATGAATGACTCAAATG
Left flanking sequence: Indices 220268 -- 220767
CCGGATCCACTAGATTTTAGTGTGCTGAAGAATTCTCTTCGTACTCCAATCCGTACGAAAGGCCC
CCTTTCTTTTGGCGGGTATCGCCACGTGGCTTAATCCCGGATCACTCCTTCAGGAATAGGACACA
ATAATATAGCGCACATCAGAGAAGAGAGTACCCCCTTTATTATAAGACAGGCCCCCCGCGTCCTT
TCTTAATAGATGGAGCAATCGTCACTCGACAGCTCGAAAGCGGATCAGTACAAACCCACGTGATC
CGTATTCGCTTACGTACCAGGCGTGCTTCGTCGTACCCTGACTACTCCTCTTTCACTGGCTTATT
TGTACCCAGCTACATGATGGCACTCCCCTCGGCCAATCCTCAATCGACAGCAACTCCGTCCTAGC
GAATCCATATCACCTGGGTCTCTTTCTCTTAGGTTGGTTTCAGCAGGAAATACAAAGAAAAGTAA
GTGGGTCCAGTCCACATCTTTTTTTCTTTAATAATGAACACTATA
Right flanking sequence: Indices 220814 -- 221313
CGGAAATACATCAATTTCTCCCTATAATATTGATACTTAGTATCACGATCAAGTTTACTAATTAC
CTTCGAAAAACATCTTTTTTTTTCATTTTTTCCTAAACTCTTATCAAAAGGTTCGCATAAGAAAT
TAACATAGTTCTCGTAAGAAGTCATTATGGTTTGAATCTTTTGTTCCCACGTATCCCTATCCTTT
TTCTTCTTTTTTTGTTTTTCTGGTATATTTTTATACAAGTATTTTTTCAGATCCTCCTGCTTGAT
TATACCTTTCCAGTTTTCTGTATCAATACCTTTTTCATCGTAAACAAATTCACCACCATCTAATC
ATTTTTCTTGATAATCAATCACATTGTGATAGATATACTCATTGATGATAGAAAGAGGATCCATT
TTACAAAATATATTGACATAAGTATCAGGCAGTTTCTTGCTATGATCAGCTGTAGTTATAAAGTT
GTCATGAACTGTGTATATGGGGGATCCCTGGTTAAGCATTTCCAA
Found at i:221914 original size:40 final size:41
Alignment explanation
Indices: 221850--221927 Score: 122
Period size: 40 Copynumber: 1.9 Consensus size: 41
221840 AAGAAACCTC
221850 CGTGGAAATGACTCCATTCAATACAGACA-AAGGTGGCTAG
1 CGTGGAAATGACTCCATTCAATACAGACAGAAGGTGGCTAG
* * *
221890 CGTGGAAATGACTCCTTTCTATACAGACAGATGGTGGC
1 CGTGGAAATGACTCCATTCAATACAGACAGAAGGTGGC
221928 ATTCAATACA
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
40 27 0.79
41 7 0.21
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.23
Consensus pattern (41 bp):
CGTGGAAATGACTCCATTCAATACAGACAGAAGGTGGCTAG
Left flanking sequence: Indices 221350 -- 221849
AATGAAATTGACGAAGGTAGATACTTGAGTCTTCCTTTTATCTCTAGTTTCCGAAGGGACTCTAA
GAGTAACCTGACGCCTCTTCTTGTGAATTCGATCATAAACCCATACATTGATAGGGTCTTTTTTC
ATATAATCCTGAACAGTTGTAAAGAAATCTGTTCTATATAGAACTTGAGGTACAAAGAGGATACC
TGTATATAGTAATAATAAATGGATTGATACTAAACCTATACATGTAGAAGATCTGTCTAACATAA
ACCCCCGCAGTGGCGAAAAAATTGTATTCTATCTAAGGAATGAAGTGAATCGTTATCAAAGTGAT
CATACCATTCTCTGTGAAAAAATCATACAGATGGAAAGACTTCTTTCAGATAAAGAGAATACTGA
AGAGATCACTAACCAGAATACCAATACTGATATGGAAACTAAGAAAACAAAGAATAAAAGAAAGC
CTCCAAGAAACACTAATACTAGCAAGAAAGCTAAGAAGAAACCTC
Right flanking sequence: Indices 221928 -- 222427
ATTCAATACAGACAGATGGTGGCTGGCGTGGATGAGTTTCTCTTATAGAATATCTAAAGCTCTGA
TCATGGATGCCAAAACTAAAGTACCACGAATCTCTTGGTGTGGCTTATCACTTCATTCCTTCTTA
AGCTGGAATAATGCCTACCGACGGCTAACCCTCTCTCATAGAATTGAGGCCTCTCCGTCGGTATT
TACCTTCTCAGGTCTGAGGTGGAAATCCTGATCAATTACCGTCCATTTCTCCACTCAACCATCGA
TTATCATAGTAGAAATCATTCTTCTTTTCGTGCAGATGAAGGGCTATGTAGGCACAAATTCTACT
TGGTGAGGGGACTAGGCAGGCAAGGTTGGATAGGACCTTGGCGAGCGATGAATGGGGGCACACTC
TTCCCTGATTTGGTCATCCATCATCTACCAAAGCGAAAATGAACCACCTATCAACTCTTACTTAC
TGTGAGGGTTTCCGGTGTGCTAGATTCAATTTTCCTGTTGCTGAT
Found at i:223141 original size:20 final size:20
Alignment explanation
Indices: 223113--223159 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
223103 TGAGAAGTAT
* *
223113 ATCCGTAGCTCTGTACAGCA
1 ATCCTTAGCTCAGTACAGCA
223133 ATCCTTAGCTCAGTACAGCA
1 ATCCTTAGCTCAGTACAGCA
223153 ATCCTTA
1 ATCCTTA
223160 CTTGCTTCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.28
Consensus pattern (20 bp):
ATCCTTAGCTCAGTACAGCA
Left flanking sequence: Indices 222613 -- 223112
TCCCCTGTAGCTATGCCGGATACGTTCCCTGCACTTTGATAACCTAGTACTTATGTCAAGAAGAT
TGAATGCGTAATAGCACGCTCAGATCTGTCAGAAAGCCTAGGTACCACAACAATGCAGACAGAGA
GACGATCTTAAGAGCATTTAGCTTTTTTCTATCAACTCATACCTCGAGCCAATGTTCGAGTACCA
GGCGCTGAAGTAACCCATGCCATACTCCCAGGAAAAGCTCGAACGGCCTTCAACAAAGGGAACCT
GTACCCGAAAGCGACACAGGGTTGTAAACCGTACTTGAGGTAGACACCCTTTGCCCCATATGGGT
GATGAGAGTTCTAACAAGCCTTTGCAGAGACAGGGTAAGAAATCCTTAGTCAAGCCCTTCACTAG
CCTCTGGCTTTCCAACTATCTTACCTATTCTAGCCTTTTTTCGTAGAAGTTTATCCACCAAAGGT
ACGTTGTCACTAGAGCGAAGCAATAGGTAAAGTGCTGAGAAGTAT
Right flanking sequence: Indices 223160 -- 223659
CTTGCTTCTTTGCCGTCGAAGTGTCCCGCTATTACACAGGAGATCTCGAGTAAAGGTAGGCCCGG
TGCTCCTTCCCTTGCCAGTCCTAGCGGGGTTATCAGGTACTCTGAACCCTCAACCTTTCTCCCAA
GCATCTTGGTTTCCCTCAAAGTACAGCTAAATAACTAAAGCCTCTTTCGCTTTTTTTACTCTTCC
TTGCTGAAGTGAGTCTATTTTATTCCGTATCCCATAGATTGTCCCGCAATCTCTTCCAAGCCGAT
GTGAGATCACTTTACCCTCCGGAACCAATGCTAAATGTCCAGGGAGTCTCTCCCATGACCGGTGA
GCTATCCAACCCACGCAGAACCAGCACCTCATTGCTTTCGGGTCTTTAGAGCAGATTCCTGAAGA
ATAACAAGCAAGAATATGGTACAGGTGAAAGCGCGGAGTGGATCGTTCCACTTTGTAACCCAAGT
TGTGGGATCGTTTCTCTATGGCAACGGACAGCTTCGAATGGACCT
Found at i:223984 original size:24 final size:24
Alignment explanation
Indices: 223957--224004 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
223947 GATGGCTATG
223957 CGCTACACCTTGGTAAGACTATAA
1 CGCTACACCTTGGTAAGACTATAA
223981 CGCTACACCTTGGTAAGACTATAA
1 CGCTACACCTTGGTAAGACTATAA
224005 GCGGAAACTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (24 bp):
CGCTACACCTTGGTAAGACTATAA
Left flanking sequence: Indices 223457 -- 223956
TCCAGGGAGTCTCTCCCATGACCGGTGAGCTATCCAACCCACGCAGAACCAGCACCTCATTGCTT
TCGGGTCTTTAGAGCAGATTCCTGAAGAATAACAAGCAAGAATATGGTACAGGTGAAAGCGCGGA
GTGGATCGTTCCACTTTGTAACCCAAGTTGTGGGATCGTTTCTCTATGGCAACGGACAGCTTCGA
ATGGACCTGGAAAGATCAGCTCTTCTTCAAGGTGTGAGGGAGCAAAACAAAAGAGAATAATTCAA
GGGAATGAGTCAGCATCTAGTAACTGCTAGGATAGCTAGCAAAAAACAATTGAGGATGGGTAGTA
ACCAGAGCATGAGTAAACACGGTCTAGCAGGCTTGCTAACATCTTGTTTCCATCCTCTTATCTTC
CGGTGTCTAGTTCCATTGGATTCTTGGTTGATAGGGTTTTCATAGGAGGGGGATAGGTTGCATTC
CTATACAACAGCTTAACAGCCTTCGCATACAAGTAGATGGCTATG
Right flanking sequence: Indices 224005 -- 224504
GCGGAAACTAATAAGATTCGTTTTCATCAACCTATTCTATTATTCACGGTAAGTCTTCGAACAAC
AACCATCTCAGCGGTGACACACGAATTAGGTAAAGAGCTTTGAAAAGCGATTACTTAATTCCTCT
TCCCTGCTAGTATCCCAGCCCACCTATTAAGGTTAAATTGGAACGGAACTGAAAGAAAGACAGCT
GGTGAATATAGGTCTACTTTTTTTCAGCTGGCAACCCCTGCTTTCAAAAGGAATGCGCTGTGAGG
GAGAAGACAGCAAGCTACTGACATTGTGAATGTCCGAGGAGTTAATAAGTGCCTCACTTTACAGT
AAAGGAAAGGTATAAAGTTTTCCATTGTCCTAGGGATTCGTATTTCCCATTGTCCTTATGGATGA
GGGAATCGAGTTGCGAAAGATGAGGGAATCTACTTGAGTCCCCCTAAAAGCAGGGTATTATTCCT
ATTTTCCCTCTTCCTCCAGCTATCAACAGGATAGAGTGGAGCCTC
Found at i:236515 original size:15 final size:15
Alignment explanation
Indices: 236495--236524 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
236485 GGCAGCTGCA
236495 CTTTCTTTTTATTTT
1 CTTTCTTTTTATTTT
*
236510 CTTTCTTTTTCTTTT
1 CTTTCTTTTTATTTT
236525 TGTTTTTTGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.80
Consensus pattern (15 bp):
CTTTCTTTTTATTTT
Left flanking sequence: Indices 235995 -- 236494
GGGAAAGTCAGTAAGATGTCGGAGAAGCAAAATATACGAGATCGCAAACGTAGATTGCTCGCGGC
TAAGTATGAATTGAGAAAGCTTTCTCAATTTGTAAAGATACCGATCGATCTAGTGATATGCGGGA
CAAACATCGAAAGTCTCAGGTGACTGAAGAACTCAGCGACGAGTTGACAAAAGAAGCCCTAAAAA
TGGACATGAACGATGTTTTGATGGGCATAAAGAAATCGTCTTGGTAGCATCAAACCAATAGAACA
AGGGTTAGCTCTGCAGCTGGTCTACAAGCAAGGTAAGTAGGTCCATGCGAGCGGCCCGGATGTAC
CTTTTAGCCGCGAGGGGAACCGGGTAAACAAAGTCGCGATCAGAATGAATGGTAGTTTGCTGGGC
CTGTTGCTCCCGGAGGCGCTGGTTCGAATCCAGTTCGTGACAACCACAAAGCCTTTGATCATAGA
ATATCTCGGGACCCCGCTGGTAAATACGGGGCTCTGGCAGCTGCA
Right flanking sequence: Indices 236525 -- 237024
TGTTTTTTGTTTTTTGTTTTTTTATGATGCATCGAATGCTTCCTCTGCTTTCAGTAAAAATCCCA
TGATCGAGGCACTCTTTCTCTTATAGCGCTCTTTCCTTCCCTTCGAGCTAGCCGGAATAAATCCA
TTTCTTTTGTCTGTAAGAGAAAAGGCGCTTATTCCATGAAATAGGAGCGCAGCGGAGTCATGAAT
AAACAAGAATAGCCACTTCCTTATCTACGCTATTTACTTTCCTCCCCTCGTGGGAAGTAGCAAGA
GCCTTTATCTAATCTACTATTGAACCATCTCACCTGAAAGTCAGTCGCTACCTTAAGGCATGCCT
TGACTCCAAGAGCTAACTCGATGGGACTTGCTTTCCTAAAGAGAAGACGAAGAGGATGACACTGG
GGATCGTTCTTACTTAAATAAATTCCCATGAGCTGCCTTGAGCTGGTAACTCCAAAATCGATGAT
TCTTGGCCACTGACTTACTGCTTTCACTCAAATGCCACTGATGCG
Found at i:236537 original size:6 final size:7
Alignment explanation
Indices: 236521--236546 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
236511 TTTCTTTTTC
236521 TTTTTGT
1 TTTTTGT
236528 TTTTTGT
1 TTTTTGT
236535 TTTTTGT
1 TTTTTGT
236542 TTTTT
1 TTTTT
236547 TATGATGCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (7 bp):
TTTTTGT
Left flanking sequence: Indices 236021 -- 236520
GCAAAATATACGAGATCGCAAACGTAGATTGCTCGCGGCTAAGTATGAATTGAGAAAGCTTTCTC
AATTTGTAAAGATACCGATCGATCTAGTGATATGCGGGACAAACATCGAAAGTCTCAGGTGACTG
AAGAACTCAGCGACGAGTTGACAAAAGAAGCCCTAAAAATGGACATGAACGATGTTTTGATGGGC
ATAAAGAAATCGTCTTGGTAGCATCAAACCAATAGAACAAGGGTTAGCTCTGCAGCTGGTCTACA
AGCAAGGTAAGTAGGTCCATGCGAGCGGCCCGGATGTACCTTTTAGCCGCGAGGGGAACCGGGTA
AACAAAGTCGCGATCAGAATGAATGGTAGTTTGCTGGGCCTGTTGCTCCCGGAGGCGCTGGTTCG
AATCCAGTTCGTGACAACCACAAAGCCTTTGATCATAGAATATCTCGGGACCCCGCTGGTAAATA
CGGGGCTCTGGCAGCTGCACTTTCTTTTTATTTTCTTTCTTTTTC
Right flanking sequence: Indices 236547 -- 237046
TATGATGCATCGAATGCTTCCTCTGCTTTCAGTAAAAATCCCATGATCGAGGCACTCTTTCTCTT
ATAGCGCTCTTTCCTTCCCTTCGAGCTAGCCGGAATAAATCCATTTCTTTTGTCTGTAAGAGAAA
AGGCGCTTATTCCATGAAATAGGAGCGCAGCGGAGTCATGAATAAACAAGAATAGCCACTTCCTT
ATCTACGCTATTTACTTTCCTCCCCTCGTGGGAAGTAGCAAGAGCCTTTATCTAATCTACTATTG
AACCATCTCACCTGAAAGTCAGTCGCTACCTTAAGGCATGCCTTGACTCCAAGAGCTAACTCGAT
GGGACTTGCTTTCCTAAAGAGAAGACGAAGAGGATGACACTGGGGATCGTTCTTACTTAAATAAA
TTCCCATGAGCTGCCTTGAGCTGGTAACTCCAAAATCGATGATTCTTGGCCACTGACTTACTGCT
TTCACTCAAATGCCACTGATGCGTAAGACATTGAGTTGGACTACT
Found at i:244676 original size:1 final size:1
Alignment explanation
Indices: 244666--244746 Score: 126
Period size: 1 Copynumber: 81.0 Consensus size: 1
244656 CTTTATATAT
* * * *
244666 AAAAATAAAAAGAAAAAAAAGAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
244731 AAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAA
244747 GATCTCAAAA
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
1 72 1.00
ACGTcount: A:0.95, C:0.00, G:0.02, T:0.02
Consensus pattern (1 bp):
A
Left flanking sequence: Indices 244166 -- 244665
CCAAGGTGGTACGTATCCTATAAAAGCTGTTACAATCATTAATAGTAAGATTACAACTCCGATAC
ACCGAACAAATTCCCTAGGACTGCTATAACTCGCATGATATAGACCACGAAAAAGATGAAGGTAA
ACCACAATGAGAAACATACTTGCCCCATTAGCATGCATATAACGGAGCAACCAGCCCCCTTCAAC
ATCTCTCATAATGTGTTCTACGCTGTTGAAAGCTAGATCCACATGAGGTGTGTAATGCATAGCTA
AAAAAACGCCAGTCACTATCTGAATGACTAAACAAATACCAGCTAACGGACCGAACCCCCACCAA
TAACTAAGATTGCTCGGGGTTGGATAATCTATCAAATGCTGATTCAGTGTGGAGAAGATAGGTTG
TTTAAGAATCGATAATCGTTGGTTCCTTATAGTCACTTATTTTTATTTTGATTTTTTAGAAAGAG
AACTCAGGTTCCCTCACCTTTTAGCGTTCTGGGGCCTTTATATAT
Right flanking sequence: Indices 244747 -- 245246
GATCTCAAAATATTTAAAGTACCCTTAGCGTAGGCCGAAAGAAAGTCAATATGAGATTTGCGTTT
TTCCAACGAAACAGTGAAAGATGCTGTTTTATCCTTATCCATGGATGGAGGGAGTGGATGGGGTC
GCATCCGCGTATACGCCGAATTGCCTACATATCTTCTTCAAAAGAATCAGACCATTGTAGTTCAG
TTAAAAAGACGTTTTAAAAAGCAATCAAAGATAAGATCGAAGAGAATGAAACGCACGTAGTGGTC
ATTATAGCGGTTCCTTCTGATCCTAGAAAACGCCCGAAAAAACCTGCTACGGAAGGGTCAGCGCG
AACGAAGGTCTACAATAACGAAATGTAGTAGATCACACTGGAAAGGTATGGAATGTGACAAATAA
ACAATAGCATAACAGCCGAAATCCGTCAATTTTCCATTTTCATTTACCCGTGTTACAGAAAGCCG
TCCCGGGAACCTTGCTACTAAATGAACTGAGTCCTCTATTGACCA
Found at i:245956 original size:45 final size:45
Alignment explanation
Indices: 245888--246013 Score: 189
Period size: 45 Copynumber: 2.8 Consensus size: 45
245878 GGAGAAAAGG
* * * * ***
245888 AGGTGCATACGATCTCGTGCAATCATACGATCTTCCCTTTTTTTA
1 AGGTGCATACGCTCTTGTTCAATCAGACGAGAATCCCTTTTTTTA
245933 AGGTGCATACGCTCTTGTTCAATCAGACGAGAATCCCTTTTTTTA
1 AGGTGCATACGCTCTTGTTCAATCAGACGAGAATCCCTTTTTTTA
245978 AGGTGCATACGCTCTTGTTCAATCAGACGAGAATCC
1 AGGTGCATACGCTCTTGTTCAATCAGACGAGAATCC
246014 TATAAAGAAG
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 74 1.00
ACGTcount: A:0.25, C:0.24, G:0.18, T:0.33
Consensus pattern (45 bp):
AGGTGCATACGCTCTTGTTCAATCAGACGAGAATCCCTTTTTTTA
Left flanking sequence: Indices 245388 -- 245887
CAGAGCATTGATTGCACTACGTACACTAATTCACAAACCTCGTGTGGGGCTAATCGTTTTCATTT
CCCATCTAAGAGAACTCAGAAGAGAAAGAAAGGTTCGTGTAACACAACTGGGAGTTCTATTACTT
AAGATGGTGTCCAGCTCCAGACTATATTTAGTCAGTTGCTTTCGCATCCTTACTCGGTGTAATCA
AGGCCTATTCGAAAGCTGCCTATGCGGTGGGTTTGAATCCCACAGGAGTGAAATAGCTTGGTTTC
TCACATAGACTTTAGTGAGTAGTGAGCTGCTTGAGATAGGGCGATGCCGTTTGCTTGCTAATGAG
TTCGGTAGCAGCCTACTTTCTATAAGGAAGTGAAAACAGGCTTGTGAAAGGAAGCTACCTACCTT
CGAACCGAGATTTCTTCTCTATACAATAAAAACTAGTACATGAAAATTGATAGGGAAAGTACACG
GGGCACTCACTTACTTATCTATTGCCCGGAATAAAGGAGAAAAGG
Right flanking sequence: Indices 246014 -- 246513
TATAAAGAAGCCAATTTGACGCATATTTCACTTGCTCTAATGAGCCGGCTAAAACTCTGTTTCCG
TTACAGGTTCTATTATTTTCTAACTCCTTGGTGTCTCGTACCTTGACTTTCGCTACCTATACCTA
GGCTTTTCTGCCTTTGTCTTTACGACCTTGGCTCTTTCCGTTCTCTGAGGTTCTTTCTATCTCGT
AAGAGGTAAGGCTTTCCCGTCTTTACTCCCTGGGAAGCTAGACTTTCTTCTCTACTCATTTTGGA
GAGCTAATCTGACTTCTATCTCTTCTCAGTTCTCTAGGGAAGGTAGGGATTACTTGAGCTTACCC
ATCACTTCATCATTCTATTTCCAGGGGATTCCTAAAGAGTAGAAGGAGTGCTTACTGATAGGCTA
ACTTCACTCCTTTCACATTTAAAGTAGCTGCGGGCACCCGACTTTCTGCTTTCTCACAAGATCTA
AGTCACTAGTAGTATAGCCGGTCCTCTAAGCAAAGGTTACCTAAA
Found at i:246754 original size:31 final size:31
Alignment explanation
Indices: 246719--246798 Score: 79
Period size: 31 Copynumber: 2.6 Consensus size: 31
246709 TAGATAAGAA
*
246719 AAGGATGCGAAAGCTACTGACTATAGAGAGT
1 AAGGATGCGAAAGCTACTGACTATAGAGAGG
*** ** * *
246750 AAGGATGCTTTAGCTACTTCCTATATATAGG
1 AAGGATGCGAAAGCTACTGACTATAGAGAGG
*
246781 AAGGATGTGAAAGCTACT
1 AAGGATGCGAAAGCTACT
246799 AACTTATATT
Statistics
Matches: 37, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.26
Consensus pattern (31 bp):
AAGGATGCGAAAGCTACTGACTATAGAGAGG
Left flanking sequence: Indices 246219 -- 246718
GCTTTCCCGTCTTTACTCCCTGGGAAGCTAGACTTTCTTCTCTACTCATTTTGGAGAGCTAATCT
GACTTCTATCTCTTCTCAGTTCTCTAGGGAAGGTAGGGATTACTTGAGCTTACCCATCACTTCAT
CATTCTATTTCCAGGGGATTCCTAAAGAGTAGAAGGAGTGCTTACTGATAGGCTAACTTCACTCC
TTTCACATTTAAAGTAGCTGCGGGCACCCGACTTTCTGCTTTCTCACAAGATCTAAGTCACTAGT
AGTATAGCCGGTCCTCTAAGCAAAGGTTACCTAAATAGCTTCTTCTAACCACTCCCTAGTTCTCT
TTCATCGATTGATATGGGAATAGCAAGCAACCCCTCCACTTCTATTTATTATAGGGAATCAGACT
CTATAGCGCCACTTCTTTTTCTTTTCACTTCTTTTCTATTATGCCTTTTCTCAACTTTAGTGTGA
AACCTGCCTAAGGAAAGAAACTTGAGGTAAGAACATAGATAAGAA
Right flanking sequence: Indices 246799 -- 247298
AACTTATATTAGAGTTTGCTTCCTTTAGCTGACTTATCAGAGATCGAGAGAATTGCCATAAAGTG
AAGACAGAAACCACGCAAAGGTGTACTAGTATCAAAAGTGAGTAGACAAGAAGGCTGTCATTGGG
GGGACCCTGCTTTGAGACTCTATTACCTATAAGATATCAGTAAGACGTGATATGAGGAAGTTAAT
GGAAAAGTAAAGCATAGTCCTTAGGTACAAGATCAGAGGAGTCAAAGAGGAGATGCCCTACCGGG
GAGGTGGCGGGCTATCATTAGAATATAGAAAGCAAGCAAATGGGGGAATTCTCCACCTTGGCTGG
TACCAGACCTTTTTTTGCCGCACCTTTGCCTCACAGGTCGATCTCCCATATGGTAGGCGTTGGCC
CCTCTGGCACTTTCGACGAAAGAAGTTCTCCACCCCTTTTCTGGTGCTTCGTGCCTGCTATGATT
GCTTGTCTCTTCGATTGCCGGACCTATCTCCGATCATGTATTTGA
Found at i:248350 original size:1 final size:1
Alignment explanation
Indices: 248335--248428 Score: 80
Period size: 1 Copynumber: 94.0 Consensus size: 1
248325 CGGGCAGGCA
* * * * * * * * *
248335 TTTTTTCTTTCTTTTTTGTTTTTTTCTTTTTTTTTGTTTTTTTCTTTTTTTCTTTTCTTTTTTCT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * *
248400 TTTCTTTTTTTTTGTTTTTTTCTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
248429 ACTTGGTTCC
Statistics
Matches: 69, Mismatches: 24, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 69 1.00
ACGTcount: A:0.00, C:0.10, G:0.03, T:0.87
Consensus pattern (1 bp):
T
Left flanking sequence: Indices 247835 -- 248334
TTGGCATAACTCCCAATCCGCTTTTTCTCATCTTGAACCTCCACTCTAGACTAAGGAGAAAGAGA
GGCATCAGATTGCTTCTTCCTTCTTGAGGGGCAGTCTAATAGGGAAGCCCCGCTTTTAGGGAAAT
GCTCTTGGTCTGCTTTCGATGTGGTCAATTCCGTCCTAGCTGTCCGGTCTGCTTGTCTGAAAAGG
ATTCAATTCCTAAAAAGTGGTCCAATCGTGGAAGGTACTTCGAATCGAATAAAGGTGTGAGCGAG
CGAGCTTATGTGCCGCCATTGACATATGGTCTGGCCATTTCCTTAACAGAATTTCAATCGTAGGT
CCCCTCGTCCGGCTATCCCCTGTGTCTAAGTCGAGTATTCGATTCCCTCTAGGCTATTCCTACGT
AAAAAATGACCTCTCGTGGTCCGCCGGCTGTGCTTTTCATTCTGTTTTATCTTCGAGCGAGGGCC
TCTGCTTTCATGGAGAATGCCCAACTGCTTTTCCGCGGGCAGGCA
Right flanking sequence: Indices 248429 -- 248928
ACTTGGTTCCAGCCTCGGTGGTCCTACAAGGGTTTACTTTACCATACCATTTAGCATCCTTTTTC
TTCGAACCTTTTTCCTATCTCTGAAGTGTATCCGCTGCTCCCCGCCGGTATAGGTCTAAGGGCGT
TTTGTCCCCTATCTCTCAATAGCACGGAACAAGATATATGTTGTGGCGGTTTCGCCGCCTATTCT
AAGGTAAATGGAGTCAGAGGAGAGGTAGGTAGTATGCCTTTCCCCATTCTGCTAGGGTGGCTTTT
CTTAACTGGGCTAGTGTCCCCTTCTGTTTAAGGTGCATTTTCTTTTCGACTGGTCCTATAAGTAG
TTGTGTGAGGGGGTGCGCGCCTCTTTTTCTTCTTCCGGCTTGAGTTCTTAATGCCTGAAGGGAAA
GACTCTTCGACCACATTAACGGCTTGAGCAAGAGCATTGGTGCTTACACGATGAAAGTAATTTGG
CCAAGCTAGAGGATTTTCCATCGATCGTGACTCAAGAACGTAAGG
Found at i:248356 original size:18 final size:19
Alignment explanation
Indices: 248335--248427 Score: 113
Period size: 18 Copynumber: 4.9 Consensus size: 19
248325 CGGGCAGGCA
248335 TTTTTTCTTTCTTTTTTGT
1 TTTTTTCTTTCTTTTTTGT
248354 TTTTTTCTTT-TTTTTTGT
1 TTTTTTCTTTCTTTTTTGT
*
248372 TTTTTTCTTT-TTTTCTTTT
1 TTTTTTCTTTCTTTT-TTGT
248391 CTTTTTTCTTTTCTTTTTT-T
1 -TTTTTTC-TTTCTTTTTTGT
248411 TTGTTTT-TTTCTTTTTT
1 TT-TTTTCTTTCTTTTTT
248428 TACTTGGTTC
Statistics
Matches: 68, Mismatches: 1, Indels: 11
0.85 0.01 0.14
Matches are distributed among these distances:
18 32 0.47
19 15 0.22
20 12 0.18
21 5 0.07
22 4 0.06
ACGTcount: A:0.00, C:0.10, G:0.03, T:0.87
Consensus pattern (19 bp):
TTTTTTCTTTCTTTTTTGT
Left flanking sequence: Indices 247835 -- 248334
TTGGCATAACTCCCAATCCGCTTTTTCTCATCTTGAACCTCCACTCTAGACTAAGGAGAAAGAGA
GGCATCAGATTGCTTCTTCCTTCTTGAGGGGCAGTCTAATAGGGAAGCCCCGCTTTTAGGGAAAT
GCTCTTGGTCTGCTTTCGATGTGGTCAATTCCGTCCTAGCTGTCCGGTCTGCTTGTCTGAAAAGG
ATTCAATTCCTAAAAAGTGGTCCAATCGTGGAAGGTACTTCGAATCGAATAAAGGTGTGAGCGAG
CGAGCTTATGTGCCGCCATTGACATATGGTCTGGCCATTTCCTTAACAGAATTTCAATCGTAGGT
CCCCTCGTCCGGCTATCCCCTGTGTCTAAGTCGAGTATTCGATTCCCTCTAGGCTATTCCTACGT
AAAAAATGACCTCTCGTGGTCCGCCGGCTGTGCTTTTCATTCTGTTTTATCTTCGAGCGAGGGCC
TCTGCTTTCATGGAGAATGCCCAACTGCTTTTCCGCGGGCAGGCA
Right flanking sequence: Indices 248428 -- 248927
TACTTGGTTCCAGCCTCGGTGGTCCTACAAGGGTTTACTTTACCATACCATTTAGCATCCTTTTT
CTTCGAACCTTTTTCCTATCTCTGAAGTGTATCCGCTGCTCCCCGCCGGTATAGGTCTAAGGGCG
TTTTGTCCCCTATCTCTCAATAGCACGGAACAAGATATATGTTGTGGCGGTTTCGCCGCCTATTC
TAAGGTAAATGGAGTCAGAGGAGAGGTAGGTAGTATGCCTTTCCCCATTCTGCTAGGGTGGCTTT
TCTTAACTGGGCTAGTGTCCCCTTCTGTTTAAGGTGCATTTTCTTTTCGACTGGTCCTATAAGTA
GTTGTGTGAGGGGGTGCGCGCCTCTTTTTCTTCTTCCGGCTTGAGTTCTTAATGCCTGAAGGGAA
AGACTCTTCGACCACATTAACGGCTTGAGCAAGAGCATTGGTGCTTACACGATGAAAGTAATTTG
GCCAAGCTAGAGGATTTTCCATCGATCGTGACTCAAGAACGTAAG
Found at i:248383 original size:43 final size:44
Alignment explanation
Indices: 248336--248428 Score: 147
Period size: 43 Copynumber: 2.2 Consensus size: 44
248326 GGGCAGGCAT
248336 TTTTTCTTTCTTTT-TTGTTT-TTTTCTTTTTTTTTGTTTTTTTC
1 TTTTT-TTTCTTTTCTTGTTTCTTTTCTTTTTTTTTGTTTTTTTC
*
248379 -TTTTTTTCTTTTCTTTTTTCTTTTCTTTTTTTTTGTTTTTTTC
1 TTTTTTTTCTTTTCTTGTTTCTTTTCTTTTTTTTTGTTTTTTTC
248422 TTTTTTT
1 TTTTTTT
248429 ACTTGGTTCC
Statistics
Matches: 46, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
41 8 0.17
42 9 0.20
43 23 0.50
44 6 0.13
ACGTcount: A:0.00, C:0.10, G:0.03, T:0.87
Consensus pattern (44 bp):
TTTTTTTTCTTTTCTTGTTTCTTTTCTTTTTTTTTGTTTTTTTC
Left flanking sequence: Indices 247836 -- 248335
TGGCATAACTCCCAATCCGCTTTTTCTCATCTTGAACCTCCACTCTAGACTAAGGAGAAAGAGAG
GCATCAGATTGCTTCTTCCTTCTTGAGGGGCAGTCTAATAGGGAAGCCCCGCTTTTAGGGAAATG
CTCTTGGTCTGCTTTCGATGTGGTCAATTCCGTCCTAGCTGTCCGGTCTGCTTGTCTGAAAAGGA
TTCAATTCCTAAAAAGTGGTCCAATCGTGGAAGGTACTTCGAATCGAATAAAGGTGTGAGCGAGC
GAGCTTATGTGCCGCCATTGACATATGGTCTGGCCATTTCCTTAACAGAATTTCAATCGTAGGTC
CCCTCGTCCGGCTATCCCCTGTGTCTAAGTCGAGTATTCGATTCCCTCTAGGCTATTCCTACGTA
AAAAATGACCTCTCGTGGTCCGCCGGCTGTGCTTTTCATTCTGTTTTATCTTCGAGCGAGGGCCT
CTGCTTTCATGGAGAATGCCCAACTGCTTTTCCGCGGGCAGGCAT
Right flanking sequence: Indices 248429 -- 248928
ACTTGGTTCCAGCCTCGGTGGTCCTACAAGGGTTTACTTTACCATACCATTTAGCATCCTTTTTC
TTCGAACCTTTTTCCTATCTCTGAAGTGTATCCGCTGCTCCCCGCCGGTATAGGTCTAAGGGCGT
TTTGTCCCCTATCTCTCAATAGCACGGAACAAGATATATGTTGTGGCGGTTTCGCCGCCTATTCT
AAGGTAAATGGAGTCAGAGGAGAGGTAGGTAGTATGCCTTTCCCCATTCTGCTAGGGTGGCTTTT
CTTAACTGGGCTAGTGTCCCCTTCTGTTTAAGGTGCATTTTCTTTTCGACTGGTCCTATAAGTAG
TTGTGTGAGGGGGTGCGCGCCTCTTTTTCTTCTTCCGGCTTGAGTTCTTAATGCCTGAAGGGAAA
GACTCTTCGACCACATTAACGGCTTGAGCAAGAGCATTGGTGCTTACACGATGAAAGTAATTTGG
CCAAGCTAGAGGATTTTCCATCGATCGTGACTCAAGAACGTAAGG
Found at i:262962 original size:15 final size:14
Alignment explanation
Indices: 262935--262971 Score: 56
Period size: 15 Copynumber: 2.6 Consensus size: 14
262925 TATCAAAATG
*
262935 GAAAAAAAGAAAAA
1 GAAAAAAAAAAAAA
262949 GAAAAGAAAAAAAAA
1 GAAAA-AAAAAAAAA
262964 GAAAAAAA
1 GAAAAAAA
262972 GCTGTTTCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 8 0.38
15 13 0.62
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (14 bp):
GAAAAAAAAAAAAA
Left flanking sequence: Indices 262435 -- 262934
CTTTTTGTTTGATCGGCCTATCTTCTTTCTATAAGCAAGCTCCCTCCGGCTGTCCAGGGGCTGGG
CGGCTCTCGGTTCTTGAGGGGGATTAGGCGGCAGTTGAAAGAGCTGCTCGAAAGCTTGACGAAGA
AGCGAAAAAGGCCTATATATAGATTCTATTATTTCTTATTATATTATTATTCTATTTTTAGTACA
AGGGCTTTTTACTAGTCAAGTGGTAAGGTAGGGCGCTATTCGATGAAGAAAACATCTTTTAGGAA
AGTGGTTCAGGTAGCTCAGCTGGTTAGAGCAAAGGACTGAAAATCCTTGTGTCAGTGGTTCGAAT
CCACTTCTAAGCGGGCCAAGGGTCCAAAGGCCGGATTTTGAAATTCAAGTGCAAGAGTAAGCCAA
AAAATGTGAGCGCTCCTGCACTATACGGCTTTTTTGCGTCGCCCTATCTTGCTGGAGGCATATTC
AAAATAGATATATAAAATAGAAAATATATAAAATCTATCAAAATG
Right flanking sequence: Indices 262972 -- 263471
GCTGTTTCTTAGGTTCTCGCGTCCCTGTGCCCAAAAGGATGGGTGAGTTCGGTTTGAGTGTTCAT
CGATCGGGTGGATCTATATGCTCCGGGGTGGTGAGACGAGGTGTAGCGCAGTCTGGTCAGCGCAT
CTGTTTTGGGTACAGAGGGCCATAGGTTCGAATCCTGTCACCTTGATGTGAGGCATTCCGTCAGC
AAATACTCAAATATGAACATCCATCGACCGTTACCACTTCCTCTTACTCGTGACTCGTATATGTA
CTTTCTATAGCAAGCACACGAGACCTATACTCAGCAACTTTGCTTAGAAACCTTTTTCCAGTTTC
TTTATGCCCAGGCTCCCTTAGTTTTCTGATCAAATGATCAGTTATCATTCCTACAATCCGGCGAA
ATTCGGGTATATAAGTGTATCCTTATGGGTATGCAAGCACTAGAACAGGGAAGGACGACGTACTA
TGATACTTTCTGTTTTGTCGAGCCTTGCTTTGGTCTCTGGTTTGA
Found at i:262969 original size:10 final size:10
Alignment explanation
Indices: 262936--262971 Score: 63
Period size: 10 Copynumber: 3.5 Consensus size: 10
262926 ATCAAAATGG
262936 AAAAAAAGAA
1 AAAAAAAGAA
262946 AAAGAAAAGAA
1 AAA-AAAAGAA
262957 AAAAAAAGAA
1 AAAAAAAGAA
262967 AAAAA
1 AAAAA
262972 GCTGTTTCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 15 0.60
11 10 0.40
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (10 bp):
AAAAAAAGAA
Left flanking sequence: Indices 262436 -- 262935
TTTTTGTTTGATCGGCCTATCTTCTTTCTATAAGCAAGCTCCCTCCGGCTGTCCAGGGGCTGGGC
GGCTCTCGGTTCTTGAGGGGGATTAGGCGGCAGTTGAAAGAGCTGCTCGAAAGCTTGACGAAGAA
GCGAAAAAGGCCTATATATAGATTCTATTATTTCTTATTATATTATTATTCTATTTTTAGTACAA
GGGCTTTTTACTAGTCAAGTGGTAAGGTAGGGCGCTATTCGATGAAGAAAACATCTTTTAGGAAA
GTGGTTCAGGTAGCTCAGCTGGTTAGAGCAAAGGACTGAAAATCCTTGTGTCAGTGGTTCGAATC
CACTTCTAAGCGGGCCAAGGGTCCAAAGGCCGGATTTTGAAATTCAAGTGCAAGAGTAAGCCAAA
AAATGTGAGCGCTCCTGCACTATACGGCTTTTTTGCGTCGCCCTATCTTGCTGGAGGCATATTCA
AAATAGATATATAAAATAGAAAATATATAAAATCTATCAAAATGG
Right flanking sequence: Indices 262972 -- 263471
GCTGTTTCTTAGGTTCTCGCGTCCCTGTGCCCAAAAGGATGGGTGAGTTCGGTTTGAGTGTTCAT
CGATCGGGTGGATCTATATGCTCCGGGGTGGTGAGACGAGGTGTAGCGCAGTCTGGTCAGCGCAT
CTGTTTTGGGTACAGAGGGCCATAGGTTCGAATCCTGTCACCTTGATGTGAGGCATTCCGTCAGC
AAATACTCAAATATGAACATCCATCGACCGTTACCACTTCCTCTTACTCGTGACTCGTATATGTA
CTTTCTATAGCAAGCACACGAGACCTATACTCAGCAACTTTGCTTAGAAACCTTTTTCCAGTTTC
TTTATGCCCAGGCTCCCTTAGTTTTCTGATCAAATGATCAGTTATCATTCCTACAATCCGGCGAA
ATTCGGGTATATAAGTGTATCCTTATGGGTATGCAAGCACTAGAACAGGGAAGGACGACGTACTA
TGATACTTTCTGTTTTGTCGAGCCTTGCTTTGGTCTCTGGTTTGA
Found at i:264980 original size:13 final size:13
Alignment explanation
Indices: 264962--264987 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
264952 GGATTCTTCT
264962 TAAATAGATAGAA
1 TAAATAGATAGAA
264975 TAAATAGATAGAA
1 TAAATAGATAGAA
264988 AAGGCCTTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.15, T:0.23
Consensus pattern (13 bp):
TAAATAGATAGAA
Left flanking sequence: Indices 264462 -- 264961
TCTCTGCCTGCAGACTAACACTCTGGAGACTGCGGGTACCTACGGTGCAACCCCGCTTAGGTCGG
AAGCCATCCCAGCCCGGGCGAATTGGGTCTTTGCATTAACTAAAAAAAGGATAAAAAGCGCATCA
GGTATAGGAAGGACTTCTTACAGGAGCACAGGAGAACAACCTATATCAAGGATGGTAGCTGACTA
GCACTAACAAGAGGGCACTGATGGGATGAGTTCCTTGATTTACTAGTCAAGAGATTCTCTGGGGA
GCTTATTACAGATATATTTCATGAAATAGAAGATGAAAAGAAACCTACAGAGGTTACTAACCCGG
CATTAGAAAAGACGATATCCACAATGTTTCCTTCATTTTTGGATAAATATCCTGATCTGATCGAT
GGGCGCATCAAATACCAAGATGATCTACCTGATAATGACTGATAACTATAGCAATAACTATAAAA
AAAGTACTATCCTATTAAAGAATTAAATTAGAAAGGGATTCTTCT
Right flanking sequence: Indices 264988 -- 265487
AAGGCCTTCTACTTACAGGCAAATAAGTCCCTACTAGTGGGATAGCCACGTACTCAGAAAAGAGT
CCGCACTACTAGGGCGAGGATACCTATTTCTATATAAGAGAGAACTACATAACAGTTGGGGCGTT
AAGCCATCATATTCCTTTCAGTAGTCTAATGAGTACGCCCCTACTAAAGGGCCTCCCTTTAAAGA
TAAAGACAGAAGCGCCTCCAATTGCTCACCAAGAATAAGTTTGAGCGCGAGAGCAAAGAAATCGG
GGTCATTTACGCTGTTGTGACAAGAGAAGTCGACCAAAGGGGTGCTGATCAGTCCATAAAAGTCC
CTAACGTGAGTGCTCTAGAATTTGCTAAAAGATTTATGGCCTATTCTATAAGGTTACACTTTACT
TTAGTCCTGTGTCCCTTCGGGTTCTCCGTACTCTCTCTTCTCTTCTGGAGTTTCCACTTTCCTGT
TTTCGGAACTGCGAGTCAATTTGCTGTGTTCGTACAGGTTACGCG
Found at i:266901 original size:13 final size:13
Alignment explanation
Indices: 266883--266914 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
266873 TAGCCCCTAA
266883 CCTACAGCTGTAT
1 CCTACAGCTGTAT
266896 CCTACAGCTGTAT
1 CCTACAGCTGTAT
266909 CCTACA
1 CCTACA
266915 TCTGCGAGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.25, C:0.34, G:0.12, T:0.28
Consensus pattern (13 bp):
CCTACAGCTGTAT
Left flanking sequence: Indices 266383 -- 266882
TTTCATTCATTCTTATTCTTCACTTATCAATTATATTATATATATTATAATATATTATATAAGTC
AAAGCCTTAAGCTAAGCAGCATACTCGAATCCTTCAACGATGATGCTGCCGTTTCGGCTTACGAC
TCTTGAACTTGAAGGTGAGCGAGCCGGTTTAGTTTAGCTCACATCATGTGAATTCTTCAGGGAAT
TGGGCCTGTGTACAGTAATTGTTCAAAAAAACCCTACTCTTACTTAGTTCATGCTGCCGGGTGTC
GATATGGCAAGTCTGGAGTCAGAAGATCGGTCCCTTCCTGCGCGTATAACACTCAGCATGTAAAC
TTCCTAACTATCTTGTTGAATGGCTTGTCTCCGGAAAGAAAAACAACCCTATCAGAGGAACGGAG
TAGCTCGACTGAAAGGCGCGACTTGCCAGGCTTGAACTGGCTGCAAATCTTTTGATTTACCTACC
GTAGGAGTCGCTTTGGTAACGCAGTTCGGATTCTTTAGCCCCTAA
Right flanking sequence: Indices 266915 -- 267414
TCTGCGAGTCACATTACATTATAGAGCAAATTCGCTTATTCTAATTCTAAGAGAATATGTCTGCG
AATTTGCTGGAGGGGGGGGAAATGTTGAATTCCGTTCGTTTGAAGGTTTCCCCACAACCGTTCAT
ACGCTGGGACCGTGTAGCGCTGCCCTGAAAAGAGCTGTTGCCGAATTGCAGGCCAATTCCGCATT
AAAAAAGCACGCTCGTATCCTTCAGCTAAGAGGGTTTTTTCCACCTCCCGTTCTATAAGACCCTG
ATAGTCTATTATTTGGTTCATCACCCGAGGACTAAGCGGGTGTTTGTTTAGCAGATTCCGCAGAC
TCAAGTGGGCCTGCAGAGCTGCCTTGCGGTTCTCGTCTGACCACAAGGGCTCCGGGGCGATAGCC
GCCGGAATCTGCTCCGGGTCTGCTATAACAGGACCCACCTGCCCATTTTGCGCCCACGCATAGGG
GGAAGGGGGTTCTGCAAAGAAACCGGAGGTATCCATAGGAGGAGT
Found at i:269329 original size:15 final size:15
Alignment explanation
Indices: 269309--269340 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
269299 TGCTTTATAT
269309 ATATATATAAAATAA
1 ATATATATAAAATAA
269324 ATATATATAAAATAA
1 ATATATATAAAATAA
269339 AT
1 AT
269341 TGGATTCTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (15 bp):
ATATATATAAAATAA
Left flanking sequence: Indices 268809 -- 269308
CTAATAGAGTCGTTAGTTCAGCAGCTCTCGGAGAGAATTCCATGATTCTACTGATTTTGGATATA
AGGGGGAATACCGCTTTCAATTTCAAAGAGCTCTATTTCCGCTATTCTTATAGATCAGATTCGAG
CTTGTACTACTAGAACTAGGAGTTGAGATAGCGCGCGGAACACCAACACAATCCTTTGTTAAATG
TCTGCGAGCTCCTTCTTCTTTCGTGAAAGCATACGAGTCGTTATGTTAAGCATCTAATCCTAGTC
TTTATGTTCTCTGTGTTAGAGGAGTTAGATGTCCCTCATGTTGAACAGTCTGACATCAAGTTGTT
AGGACCTGAGTCGCTATGCGAACACTTAACACAAGACTGAAATCAAGCTAGAGTGGTTTTTGAAT
CAGTCATCAAGGATCTTAGCCAAACGGTGACCGGCTACGTAAGCACTTTGGGCGCAGGTTTCTCG
ATCGGACTTGACGAATTGTCATAAAGACATCACTCTGCTTTATAT
Right flanking sequence: Indices 269341 -- 269840
TGGATTCTAAAATAAGATTCAATGAATTAGAAGCATTCGCAGTTTTCAGTTCGTTTGTCATCATC
TTTTCTCCTCATCGCTAGCCTGTTTCCAAGAGGGGGAAGAGAAGGTCTTTCAAGTTGGAGAGCAT
ATGAGATTTCTCCATCGCAGCATTGCATCTATCGACTGAACAAAGTAACTTTCGAAGTGGACTGG
GAAGGAATGCGAATAGGTATTTCAATTGTTGGACTAAATGAATAGGCAAGGAAGGCAAGGCACTT
GACTGAAAGGTCCTACCCGACTCATTCTTAGGACAGGCTTAGCTCTAGCTATCTAAAATGAAGAA
ATTGTACAAGGGATCAATCCTATTTCACAAAGTAACTTCTCAAAGGTCGAAGGCGTAGTATCGAT
TACTTGTGTTGGACTACCTTTATAGGATAGATCTGATATACTGTTAGGTTTTGGTTGGACTGCTT
GGTACGGAATTCACTGAGATTGACTTTAGATATCGCATTTCCGGT
Found at i:273132 original size:28 final size:22
Alignment explanation
Indices: 273055--273111 Score: 105
Period size: 22 Copynumber: 2.5 Consensus size: 22
273045 GGAGAAGTGA
273055 TACCTGTCGACCGTGAGGGAGAC
1 TACC-GTCGACCGTGAGGGAGAC
273078 TACCGTCGACCGTGAGGGAGAC
1 TACCGTCGACCGTGAGGGAGAC
273100 TACCGTCGACCG
1 TACCGTCGACCG
273112 ACCTTAGGAG
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 30 0.88
23 4 0.12
ACGTcount: A:0.21, C:0.30, G:0.33, T:0.16
Consensus pattern (22 bp):
TACCGTCGACCGTGAGGGAGAC
Left flanking sequence: Indices 272555 -- 273054
CGTGAACCAGAAAGAATGAGCCGCTTCAATACCAAAAGGAAGAAATCAGCACTTGCTTCTTGAGC
TGGTACAACAACTCCAGCAAGAAGGATTAGCCGATTAGAAGGCATGGCCAAGGGTACTACAAGCG
GAACCCCAGTCCCAAGCTATAGGACGACAGATGAATTAGGCGCTGACTCCAAGACTGATACGATA
GGCTTTGAGTCATCAGTTTGATCTCCTAGATGAGAGGGCTATGGGTATAGACCCGAAAGCACCTT
CACTGGCCATGGACTACTCAATCAATCGGACAACCGCTTCACTACTTCCAAGACTGAAAATCCAA
TGATAGAAGAATCGACTGCAGCAAAACTTCCTAAACTAGACTAGAATAATCTTTCGTAGCAGTCA
AGGATGAGTTCGATCCATTAGGTTCTTCGATTTGTTCAGAGGGAGTGGGAAAGCTACATAAATTC
TTTGGAAAAGCCTGCTTGGAAGCTCTCTTTTAGTCGGAGAAGTGA
Right flanking sequence: Indices 273112 -- 273543
ACCTTAGGAGGGAGACTACCGCCCCTGAGGGGCTTGTTGCTAGAGGCATCCCCTCAAATGAGATT
TATCAACTCTACAACAGCTCCGGTTTTAGCAATAAGAGCCCGCCTTCCGGGTCCTATATTCTAGT
TACTAGCTTCAAAGGAACTACTAAAAGAAGGAGTCAAAGCATCGGATAGTGCTACCTACGAGTGA
GTCACCCGCCTGGTTACCTGTCCTTATGAAGGAAGGTGCGCATGAAAGTCTTTACGGAAGACCAT
CAAATTACTGATTAGGAAGGTATTTAAGGAATGAACTTCTATTACAGGGATTCTTTTATTAAGAC
CTTTCGGATAGATAGCCCTATTGAATGAAGGTTGAACACCAACCCGCCTGGAAAGCTAAGAGTCG
GCAAAGACCTAGCTGTCGAGGAATGAAAGAAGTCGCTTTCTA
Done.