Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_023337
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 300945
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Found at i:6211 original size:9 final size:9
Alignment explanation
Indices: 6193--6232 Score: 55
Period size: 9 Copynumber: 4.4 Consensus size: 9
6183 AATGAAAAAC
6193 AAAAAC-AA
1 AAAAACAAA
6201 AAAAACAAA
1 AAAAACAAA
6210 AAAAACAAA
1 AAAAACAAA
*
6219 AAGAAAGAAA
1 AA-AAACAAA
6229 AAAA
1 AAAA
6233 GAAATAAAGA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
8 6 0.21
9 15 0.52
10 8 0.28
ACGTcount: A:0.88, C:0.07, G:0.05, T:0.00
Consensus pattern (9 bp):
AAAAACAAA
Left flanking sequence: Indices 5693 -- 6192
CTACAACAAGTGGGAGAGGCAGGATTCGAACCTACGTAGAAAAACTTCAACAGATTTACAGTCTG
TCGCTTTTAACCACTCGGCCACTCTCCCCTTCCCGGGGCGAGGCCCCCCTTCGTAGCTTCTGGCG
AAGCTGCGAGTTCATGAGCAAGTGAATGAACGAGCCATGTTCCTAAAAGGAGTGACCCTCTTTCT
TTTCTTCCCTTTCCCTATCCCTTCAAAGCCCGGTTGGGCGCTAGCGCTTGACTAATAGAAAGTCA
GGCTCTTCTGCTGAGCGAAGCTGCGAGCCTACCCTTCTCGAGCCTACAACAATAGCTTACGCTTA
CCAAGCCTAAAAATAGGGCTACAGCAAGCCAAGCAAAGCAAGCTTTCCCCCTTCGTTTGTTGTGG
GTCGCGCCTCACCGCAGGTACTGAATGAATGAAATGAGTGGAGATCTTCCTTCCCCCTTGCTAAT
TACCAAGAACTTCGTTGCCACTAGTGGCGAAGAATAATGAAAAAC
Right flanking sequence: Indices 6233 -- 6732
GAAATAAAGAACTCGGAGCCTAAAGAGAAGTAAGTCTACAAGAAGCTGGCAGAGCTTTAGCCATT
GGACCACATCGATCTATCCTACCTAAACAGTAAGCCTTTTCTTATTCGTTCTTCGAATGAGGCTA
GTGGAGACTAATTCCTTCCGGCTAATGAAGAGACTACTCCAGTCTTCCCATTCATTCCCATCCTT
CTTCTCCCTAAGAATTGAACGAACCAAGTTCACCTATTCGAGAGTGAGGAAGAAAAACCAACAAG
AAACTTCCCACTTTTGATGTCCTGCGATTCTGCTAGTTTAGAAACTAAGGAGAAGGACAGGGGGC
GCTAGGTCAGAAAAGCGAGAACTCTAAATTCTCCCCAAGTAGGATTTGAACCTACGACCAGTCAG
TTAACAGCCGACCGCTCTACCACTGAGCTACTGAGGAACAACGGACTTAAGGAAGCCGACTCTCG
TTCTTTGGACCAACCTATGACCGGAGTTCGTCACCCTCACATACA
Found at i:6229 original size:16 final size:16
Alignment explanation
Indices: 6187--6243 Score: 53
Period size: 16 Copynumber: 3.5 Consensus size: 16
6177 AAGAATAATG
*
6187 AAAAACAAAAACAAAA
1 AAAAAGAAAAACAAAA
*
6203 AAACAAAAAAAACAAAA
1 AAA-AAGAAAAACAAAA
*
6220 AGAAAGAAAAA-AAGAA
1 AAAAAGAAAAACAA-AA
*
6236 ATAAAGAA
1 AAAAAGAA
6244 CTCGGAGCCT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
15 2 0.06
16 19 0.54
17 14 0.40
ACGTcount: A:0.84, C:0.07, G:0.07, T:0.02
Consensus pattern (16 bp):
AAAAAGAAAAACAAAA
Left flanking sequence: Indices 5687 -- 6186
TGAAGTCTACAACAAGTGGGAGAGGCAGGATTCGAACCTACGTAGAAAAACTTCAACAGATTTAC
AGTCTGTCGCTTTTAACCACTCGGCCACTCTCCCCTTCCCGGGGCGAGGCCCCCCTTCGTAGCTT
CTGGCGAAGCTGCGAGTTCATGAGCAAGTGAATGAACGAGCCATGTTCCTAAAAGGAGTGACCCT
CTTTCTTTTCTTCCCTTTCCCTATCCCTTCAAAGCCCGGTTGGGCGCTAGCGCTTGACTAATAGA
AAGTCAGGCTCTTCTGCTGAGCGAAGCTGCGAGCCTACCCTTCTCGAGCCTACAACAATAGCTTA
CGCTTACCAAGCCTAAAAATAGGGCTACAGCAAGCCAAGCAAAGCAAGCTTTCCCCCTTCGTTTG
TTGTGGGTCGCGCCTCACCGCAGGTACTGAATGAATGAAATGAGTGGAGATCTTCCTTCCCCCTT
GCTAATTACCAAGAACTTCGTTGCCACTAGTGGCGAAGAATAATG
Right flanking sequence: Indices 6244 -- 6743
CTCGGAGCCTAAAGAGAAGTAAGTCTACAAGAAGCTGGCAGAGCTTTAGCCATTGGACCACATCG
ATCTATCCTACCTAAACAGTAAGCCTTTTCTTATTCGTTCTTCGAATGAGGCTAGTGGAGACTAA
TTCCTTCCGGCTAATGAAGAGACTACTCCAGTCTTCCCATTCATTCCCATCCTTCTTCTCCCTAA
GAATTGAACGAACCAAGTTCACCTATTCGAGAGTGAGGAAGAAAAACCAACAAGAAACTTCCCAC
TTTTGATGTCCTGCGATTCTGCTAGTTTAGAAACTAAGGAGAAGGACAGGGGGCGCTAGGTCAGA
AAAGCGAGAACTCTAAATTCTCCCCAAGTAGGATTTGAACCTACGACCAGTCAGTTAACAGCCGA
CCGCTCTACCACTGAGCTACTGAGGAACAACGGACTTAAGGAAGCCGACTCTCGTTCTTTGGACC
AACCTATGACCGGAGTTCGTCACCCTCACATACACCGGGAAAAAG
Found at i:11005 original size:7 final size:7
Alignment explanation
Indices: 10993--11028 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
10983 TTCTTCTCTT
10993 TTTTTTC
1 TTTTTTC
11000 TTTTTTC
1 TTTTTTC
11007 -TTTTTC
1 TTTTTTC
11013 -TTTTTC
1 TTTTTTC
11019 TTTTTTC
1 TTTTTTC
11026 TTT
1 TTT
11029 AATATAATAG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 12 0.43
7 16 0.57
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (7 bp):
TTTTTTC
Left flanking sequence: Indices 10493 -- 10992
TTTTGTTTGATTCCGGCACTTGCGTTCTCATGCCCGGAACCCTCGCGACTGATTGGGAGAAAGAG
CGAAAGCGAGAAAGATGGATTGTTATCCATCGGAAATCGATAGGAATTCCACGGGGATTGCCTTC
TCTTCTAATATATATATATGTTTTTATTTCATTATTAACATCCAATCCCATGCTAATAAGAAAAA
CGAGCGATTGCTAGTCAGCTTTCATTTTCTTAAAAAAAATGGTAGGGACTGAGGCTCTGAAGGCT
TTACAACTTTCTTCAATTAGGGAATAGCGCAGATGGATCAATCACGCGGTTCTGCAGCGTCCTCC
AACTCCCTGTCCGCTCCCCTTCACTTTCTTTGCTGGACGGGAAGATGCGAATCGGGAAGGCCTTC
CCACCACGCGAAGTTCAAACCTCGCCGGAGAGGAATTGAAAACCGGGAAAAAAGCCCTTCGCAAT
CGAAGGTGAAAGCGGGAAAAAGACGACGAAAGCCTTTCTTCTCTT
Right flanking sequence: Indices 11029 -- 11528
AATATAATAGGTCTTCTCCCTTCGATCCGCGAAGTAGGCAAGCAGGAATCTCTCCCCCTTTCTGT
TTATGGATAGAAAGAATATCTCCTTAGGAGAGTATTTTATGAGTTGACTGTAACCCGAAGGCTTC
TTTCAATCGATCTAGTAGGTAAGAAATAAGATCTTCGTATAGTTAATGAATTAAAGCGAAACCAC
TAGGTTAGATCTCGTCTGTGATCCCTCTGGGCTTGTTAATTGAGAGAGAAACCCCTACTATTGAT
CGTGGCCTTCATTGAGTGCATTTTTGGCTCTTTGACATAGTAAGGCGGGAAGGCATGAGCAAGCC
ACTTACAAAGGCCTTTCACAGCTCAAATCCATGCATTAAGCCGCTAATCCCTTTTCTAGCAAAGT
CCCAGCAGGCTACCTCATCGGGAAATTCAATTCTTTCACCGAACCCAGGGGGGGCACGATGAATA
CATTGATTATCTGGGTCCGATCATCGCTAGAGGCCCGTCGACTAT
Found at i:11012 original size:13 final size:12
Alignment explanation
Indices: 10991--11028 Score: 58
Period size: 13 Copynumber: 3.0 Consensus size: 12
10981 CTTTCTTCTC
10991 TTTTTTTTCTTT
1 TTTTTTTTCTTT
11003 TTTCTTTTTCTTT
1 TTT-TTTTTCTTT
11016 TTCTTTTTTCTTT
1 TT-TTTTTTCTTT
11029 AATATAATAG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 3 0.12
13 20 0.83
14 1 0.04
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (12 bp):
TTTTTTTTCTTT
Left flanking sequence: Indices 10491 -- 10990
CCTTTTGTTTGATTCCGGCACTTGCGTTCTCATGCCCGGAACCCTCGCGACTGATTGGGAGAAAG
AGCGAAAGCGAGAAAGATGGATTGTTATCCATCGGAAATCGATAGGAATTCCACGGGGATTGCCT
TCTCTTCTAATATATATATATGTTTTTATTTCATTATTAACATCCAATCCCATGCTAATAAGAAA
AACGAGCGATTGCTAGTCAGCTTTCATTTTCTTAAAAAAAATGGTAGGGACTGAGGCTCTGAAGG
CTTTACAACTTTCTTCAATTAGGGAATAGCGCAGATGGATCAATCACGCGGTTCTGCAGCGTCCT
CCAACTCCCTGTCCGCTCCCCTTCACTTTCTTTGCTGGACGGGAAGATGCGAATCGGGAAGGCCT
TCCCACCACGCGAAGTTCAAACCTCGCCGGAGAGGAATTGAAAACCGGGAAAAAAGCCCTTCGCA
ATCGAAGGTGAAAGCGGGAAAAAGACGACGAAAGCCTTTCTTCTC
Right flanking sequence: Indices 11029 -- 11528
AATATAATAGGTCTTCTCCCTTCGATCCGCGAAGTAGGCAAGCAGGAATCTCTCCCCCTTTCTGT
TTATGGATAGAAAGAATATCTCCTTAGGAGAGTATTTTATGAGTTGACTGTAACCCGAAGGCTTC
TTTCAATCGATCTAGTAGGTAAGAAATAAGATCTTCGTATAGTTAATGAATTAAAGCGAAACCAC
TAGGTTAGATCTCGTCTGTGATCCCTCTGGGCTTGTTAATTGAGAGAGAAACCCCTACTATTGAT
CGTGGCCTTCATTGAGTGCATTTTTGGCTCTTTGACATAGTAAGGCGGGAAGGCATGAGCAAGCC
ACTTACAAAGGCCTTTCACAGCTCAAATCCATGCATTAAGCCGCTAATCCCTTTTCTAGCAAAGT
CCCAGCAGGCTACCTCATCGGGAAATTCAATTCTTTCACCGAACCCAGGGGGGGCACGATGAATA
CATTGATTATCTGGGTCCGATCATCGCTAGAGGCCCGTCGACTAT
Found at i:11018 original size:19 final size:18
Alignment explanation
Indices: 10981--11028 Score: 69
Period size: 19 Copynumber: 2.6 Consensus size: 18
10971 CGACGAAAGC
* *
10981 CTTTCTTCTCTTTTTTTT
1 CTTTTTTCTTTTTTTTTT
10999 CTTTTTTCTTTTTCTTTTT
1 CTTTTTTCTTTTT-TTTTT
11018 CTTTTTTCTTT
1 CTTTTTTCTTT
11029 AATATAATAG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
18 11 0.41
19 16 0.59
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (18 bp):
CTTTTTTCTTTTTTTTTT
Left flanking sequence: Indices 10481 -- 10980
GACGTTCGGACCTTTTGTTTGATTCCGGCACTTGCGTTCTCATGCCCGGAACCCTCGCGACTGAT
TGGGAGAAAGAGCGAAAGCGAGAAAGATGGATTGTTATCCATCGGAAATCGATAGGAATTCCACG
GGGATTGCCTTCTCTTCTAATATATATATATGTTTTTATTTCATTATTAACATCCAATCCCATGC
TAATAAGAAAAACGAGCGATTGCTAGTCAGCTTTCATTTTCTTAAAAAAAATGGTAGGGACTGAG
GCTCTGAAGGCTTTACAACTTTCTTCAATTAGGGAATAGCGCAGATGGATCAATCACGCGGTTCT
GCAGCGTCCTCCAACTCCCTGTCCGCTCCCCTTCACTTTCTTTGCTGGACGGGAAGATGCGAATC
GGGAAGGCCTTCCCACCACGCGAAGTTCAAACCTCGCCGGAGAGGAATTGAAAACCGGGAAAAAA
GCCCTTCGCAATCGAAGGTGAAAGCGGGAAAAAGACGACGAAAGC
Right flanking sequence: Indices 11029 -- 11528
AATATAATAGGTCTTCTCCCTTCGATCCGCGAAGTAGGCAAGCAGGAATCTCTCCCCCTTTCTGT
TTATGGATAGAAAGAATATCTCCTTAGGAGAGTATTTTATGAGTTGACTGTAACCCGAAGGCTTC
TTTCAATCGATCTAGTAGGTAAGAAATAAGATCTTCGTATAGTTAATGAATTAAAGCGAAACCAC
TAGGTTAGATCTCGTCTGTGATCCCTCTGGGCTTGTTAATTGAGAGAGAAACCCCTACTATTGAT
CGTGGCCTTCATTGAGTGCATTTTTGGCTCTTTGACATAGTAAGGCGGGAAGGCATGAGCAAGCC
ACTTACAAAGGCCTTTCACAGCTCAAATCCATGCATTAAGCCGCTAATCCCTTTTCTAGCAAAGT
CCCAGCAGGCTACCTCATCGGGAAATTCAATTCTTTCACCGAACCCAGGGGGGGCACGATGAATA
CATTGATTATCTGGGTCCGATCATCGCTAGAGGCCCGTCGACTAT
Found at i:23311 original size:12 final size:12
Alignment explanation
Indices: 23294--23318 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
23284 TATGCGACCT
23294 TCATTCACTAGA
1 TCATTCACTAGA
23306 TCATTCACTAGA
1 TCATTCACTAGA
23318 T
1 T
23319 GTAAAGAAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.24, G:0.08, T:0.36
Consensus pattern (12 bp):
TCATTCACTAGA
Left flanking sequence: Indices 22794 -- 23293
CTCCTCTACCCTTGGTACAGAGCTTCCATTTCGAGAACCTTTCATCCGAATCTCCCGGCTGATTC
AACACGAGCAATTAAAACTACCGACTCTAGAACAGCGAAAACAGAGCTAATACCGATTCCTGGAC
CTGGTGAAAGCTTTTTCCCTGCCTTTATTCAACAGTCCGAGAGGATCTTGGACAAAGGATTACCG
GCCTCCCTATCCCATCTAATAGCCTATTGGTCTTACCAGCAGCCTATCCTATGCTCTGCTTCCGA
AGAGGCTAGACCGCTAATGCCGTTGAATGAACGTCCTTTCGGACATGCTGTTGAAAGATGAGTCC
TCTGTGCACATCAAATTATTCCTGAAACCAGGGCATTTCTTGCTTCTGATCTTTCCTGTCTTCTC
TTATCTGCGGCGTCTTGCTTGCCCTTTTAATATGCTATTTATCTCCCCTTCGTTTAGTTCAATAG
CAGCGAATTCTATAACAGACGAGTCTTGCAGCGCATATGCGACCT
Right flanking sequence: Indices 23319 -- 23818
GTAAAGAAACCTTCCTAAGGGGAAAGCCACATACCCACTTTTCCCCCTCCTCCTTCCTCCGTTAT
TTTAGCTGCTACGGCGACAGACGCATGAACAAGTGCCATTTGGAGGGAGGATTCTATGGGAAATG
GAAAAACGTCGAAGTAAGCAGTGGCTTATAAATCGGTACTAGAAGCCCGAGAGCTTGCCTGTAAG
ACAATTAACCCCACCTTATGTGCCTAGCCCAGCCCTTCTTCTCTTCCCCTCCGTACTGTATGACT
GTATGTAGGGAACACCGCCTCAGAAGGTATTTGATCTGTATTTCCATTTCCAATACATCTGAAGG
AGTTTCCCTGAAAGCTATGCTATGCCTTTTTACCTCTCCCTGTCGCAGGAGCTTAGCCATGTGTG
ACCTGAAATGGATGTAGAATAAATACCCGGTAAAAGAAGGGACTCTGATGAAAGGCCCTTAAGGA
AAGGAGCTTTCCTATTTTTTTTCAGGCGGGGAATCCTCATTGTGT
Found at i:42413 original size:6 final size:7
Alignment explanation
Indices: 42396--42421 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
42386 ATGCATCATA
42396 AAAAAAC
1 AAAAAAC
42403 AAAAAAC
1 AAAAAAC
42410 AAAAAAC
1 AAAAAAC
42417 AAAAA
1 AAAAA
42422 GAAAAAGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (7 bp):
AAAAAAC
Left flanking sequence: Indices 41896 -- 42395
AGTAGTCCAACTCAATGTCTTACGCATCAGTGGCATTTGAGTGAAAGCAGTAAGTCAGTGGCCAA
GAATCATCGATTTTGGAGTTACCAGCTCAAGGCAGCTCATGGGAATTTATTTAAGTAAGAACGAT
CCCCAGTGTCATCCTCTTCGTCTTCTCTTTAGGAAAGCAAGTCCCATCGAGTTAGCTCTTGGAGT
CAAGGCATGCCTTAAGGTAGCGACTGACTTTCAGGTGAGATGGTTCAATAGTAGATTAGATAAAG
GCTCTTGCTACTTCCCACGAGGGGAGGAAAGTAAATAGCGTAGATAAGGAAGTGGCTATTCTTGT
TTATTCATGACTCCGCTGCGCTCCTATTTCATGGAATAAGCGCCTTTTCTCTTACAGACAAAAGA
AATGGATTTCTTCCGGCTAGCTCGAAGGGAAGGAAAGAGCGCTATAAGAGAAAGAGTGCCTCGAT
CATGGGATTTTTACTGAAAGCAGAGGAAGCATTCGATGCATCATA
Right flanking sequence: Indices 42422 -- 42921
GAAAAAGAAAGAAAATAAAAAGAAAGTGCAGCTGCCAGAGCCCCGTATTTACCAGCGGGGTCCCG
AGATATTCTATGATCAAAGGCTTTGTGGTTGTCACGAACTGGATTCGAACCAGCGCCTCCGGGAG
CAACAGGCCCAGCAAACTACCATTCATTCTGATCGCGACTTTGTTTACCCGGTTCCCCTCGCGGC
TAAAAGGTACATCCGGGCCGCTCGCATGGACCTACTTACCTTGCTTGTAGACCAGCTGCAGAGCT
AACCCTTGTTCTATTGGTTTGATGCTACCAAGACGATTTCTTTATGCCCATCAAAACATCGTTCA
TGTCCATTTTTAGGGCTTCTTTTGTCAACTCGTCGCTGAGTTCTTCAGTCACCTGAGACTTTCGA
TGTTTGTCCCGCATATCACTAGATCGATCGGTATCTTTACAAATTGAGAAAGCTTTCTCAATTCA
TACTTAGCCGCGAGCAATCTACGTTTGCGATCTCGTATATTTTGC
Found at i:42427 original size:21 final size:21
Alignment explanation
Indices: 42397--42446 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
42387 TGCATCATAA
* *
42397 AAAAACAAAAA-ACAAAAAAC
1 AAAAAGAAAAAGAAAAAAAAC
* *
42417 AAAAAGAAAAAGAAAGAAAAT
1 AAAAAGAAAAAGAAAAAAAAC
42438 AAAAAGAAA
1 AAAAAGAAA
42447 GTGCAGCTGC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
20 10 0.40
21 15 0.60
ACGTcount: A:0.84, C:0.06, G:0.08, T:0.02
Consensus pattern (21 bp):
AAAAAGAAAAAGAAAAAAAAC
Left flanking sequence: Indices 41897 -- 42396
GTAGTCCAACTCAATGTCTTACGCATCAGTGGCATTTGAGTGAAAGCAGTAAGTCAGTGGCCAAG
AATCATCGATTTTGGAGTTACCAGCTCAAGGCAGCTCATGGGAATTTATTTAAGTAAGAACGATC
CCCAGTGTCATCCTCTTCGTCTTCTCTTTAGGAAAGCAAGTCCCATCGAGTTAGCTCTTGGAGTC
AAGGCATGCCTTAAGGTAGCGACTGACTTTCAGGTGAGATGGTTCAATAGTAGATTAGATAAAGG
CTCTTGCTACTTCCCACGAGGGGAGGAAAGTAAATAGCGTAGATAAGGAAGTGGCTATTCTTGTT
TATTCATGACTCCGCTGCGCTCCTATTTCATGGAATAAGCGCCTTTTCTCTTACAGACAAAAGAA
ATGGATTTCTTCCGGCTAGCTCGAAGGGAAGGAAAGAGCGCTATAAGAGAAAGAGTGCCTCGATC
ATGGGATTTTTACTGAAAGCAGAGGAAGCATTCGATGCATCATAA
Right flanking sequence: Indices 42447 -- 42946
GTGCAGCTGCCAGAGCCCCGTATTTACCAGCGGGGTCCCGAGATATTCTATGATCAAAGGCTTTG
TGGTTGTCACGAACTGGATTCGAACCAGCGCCTCCGGGAGCAACAGGCCCAGCAAACTACCATTC
ATTCTGATCGCGACTTTGTTTACCCGGTTCCCCTCGCGGCTAAAAGGTACATCCGGGCCGCTCGC
ATGGACCTACTTACCTTGCTTGTAGACCAGCTGCAGAGCTAACCCTTGTTCTATTGGTTTGATGC
TACCAAGACGATTTCTTTATGCCCATCAAAACATCGTTCATGTCCATTTTTAGGGCTTCTTTTGT
CAACTCGTCGCTGAGTTCTTCAGTCACCTGAGACTTTCGATGTTTGTCCCGCATATCACTAGATC
GATCGGTATCTTTACAAATTGAGAAAGCTTTCTCAATTCATACTTAGCCGCGAGCAATCTACGTT
TGCGATCTCGTATATTTTGCTTCTCCGACATCTTACTGACTTTCC
Found at i:42436 original size:15 final size:15
Alignment explanation
Indices: 42418--42447 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
42408 ACAAAAAACA
42418 AAAAGAAAAAGAAAG
1 AAAAGAAAAAGAAAG
*
42433 AAAATAAAAAGAAAG
1 AAAAGAAAAAGAAAG
42448 TGCAGCTGCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.03
Consensus pattern (15 bp):
AAAAGAAAAAGAAAG
Left flanking sequence: Indices 41918 -- 42417
CGCATCAGTGGCATTTGAGTGAAAGCAGTAAGTCAGTGGCCAAGAATCATCGATTTTGGAGTTAC
CAGCTCAAGGCAGCTCATGGGAATTTATTTAAGTAAGAACGATCCCCAGTGTCATCCTCTTCGTC
TTCTCTTTAGGAAAGCAAGTCCCATCGAGTTAGCTCTTGGAGTCAAGGCATGCCTTAAGGTAGCG
ACTGACTTTCAGGTGAGATGGTTCAATAGTAGATTAGATAAAGGCTCTTGCTACTTCCCACGAGG
GGAGGAAAGTAAATAGCGTAGATAAGGAAGTGGCTATTCTTGTTTATTCATGACTCCGCTGCGCT
CCTATTTCATGGAATAAGCGCCTTTTCTCTTACAGACAAAAGAAATGGATTTCTTCCGGCTAGCT
CGAAGGGAAGGAAAGAGCGCTATAAGAGAAAGAGTGCCTCGATCATGGGATTTTTACTGAAAGCA
GAGGAAGCATTCGATGCATCATAAAAAAACAAAAAACAAAAAACA
Right flanking sequence: Indices 42448 -- 42947
TGCAGCTGCCAGAGCCCCGTATTTACCAGCGGGGTCCCGAGATATTCTATGATCAAAGGCTTTGT
GGTTGTCACGAACTGGATTCGAACCAGCGCCTCCGGGAGCAACAGGCCCAGCAAACTACCATTCA
TTCTGATCGCGACTTTGTTTACCCGGTTCCCCTCGCGGCTAAAAGGTACATCCGGGCCGCTCGCA
TGGACCTACTTACCTTGCTTGTAGACCAGCTGCAGAGCTAACCCTTGTTCTATTGGTTTGATGCT
ACCAAGACGATTTCTTTATGCCCATCAAAACATCGTTCATGTCCATTTTTAGGGCTTCTTTTGTC
AACTCGTCGCTGAGTTCTTCAGTCACCTGAGACTTTCGATGTTTGTCCCGCATATCACTAGATCG
ATCGGTATCTTTACAAATTGAGAAAGCTTTCTCAATTCATACTTAGCCGCGAGCAATCTACGTTT
GCGATCTCGTATATTTTGCTTCTCCGACATCTTACTGACTTTCCC
Found at i:54969 original size:24 final size:24
Alignment explanation
Indices: 54941--54988 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
54931 TAGTTTCCGC
54941 TTATAGTCTTACCAAGGTGTAGCG
1 TTATAGTCTTACCAAGGTGTAGCG
54965 TTATAGTCTTACCAAGGTGTAGCG
1 TTATAGTCTTACCAAGGTGTAGCG
54989 CATAGCCATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (24 bp):
TTATAGTCTTACCAAGGTGTAGCG
Left flanking sequence: Indices 54441 -- 54940
GAGGCTCCACTCTATCCTGTTGATAGCTGGAGGAAGAGGGAAAATAGGAATAATACCCTGCTTTT
AGGGGGACTCAAGTAGATTCCCTCATCTTTCGCAACTCGATTCCCTCATCCATAAGGACAATGGG
AAATACGAATCCCTAGGACAATGGAAAACTTTATACCTTTCCTTTACTGTAAAGTGAGGCACTTA
TTAACTCCTCGGACATTCACAATGTCAGTAGCTTGCTGTCTTCTCCCTCACAGCGCATTCCTTTT
GAAAGCAGGGGTTGCCAGCTGAAAAAAAGTAGACCTATATTCACCAGCTGTCTTTCTTTCAGTTC
CGTTCCAATTTAACCTTAATAGGTGGGCTGGGATACTAGCAGGGAAGAGGAATTAAGTAATCGCT
TTTCAAAGCTCTTTACCTAATTCGTGTGTCACCGCTGAGATGGTTGTTGTTCGAAGACTTACCGT
GAATAATAGAATAGGTTGATGAAAACGAATCTTATTAGTTTCCGC
Right flanking sequence: Indices 54989 -- 55488
CATAGCCATCTACTTGTATGCGAAGGCTGTTAAGCTGTTGTATAGGAATGCAACCTATCCCCCTC
CTATGAAAACCCTATCAACCAAGAATCCAATGGAACTAGACACCGGAAGATAAGAGGATGGAAAC
AAGATGTTAGCAAGCCTGCTAGACCGTGTTTACTCATGCTCTGGTTACTACCCATCCTCAATTGT
TTTTTGCTAGCTATCCTAGCAGTTACTAGATGCTGACTCATTCCCTTGAATTATTCTCTTTTGTT
TTGCTCCCTCACACCTTGAAGAAGAGCTGATCTTTCCAGGTCCATTCGAAGCTGTCCGTTGCCAT
AGAGAAACGATCCCACAACTTGGGTTACAAAGTGGAACGATCCACTCCGCGCTTTCACCTGTACC
ATATTCTTGCTTGTTATTCTTCAGGAATCTGCTCTAAAGACCCGAAAGCAATGAGGTGCTGGTTC
TGCGTGGGTTGGATAGCTCACCGGTCATGGGAGAGACTCCCTGGA
Found at i:55811 original size:20 final size:20
Alignment explanation
Indices: 55786--55832 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
55776 AAGAAGCAAG
*
55786 TAAGGATTGCTGTACTGAGC
1 TAAGGATTGCTGTACAGAGC
55806 TAAGGATTGCTGTACAGAGC
1 TAAGGATTGCTGTACAGAGC
*
55826 TACGGAT
1 TAAGGAT
55833 ATACTTCTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.28
Consensus pattern (20 bp):
TAAGGATTGCTGTACAGAGC
Left flanking sequence: Indices 55286 -- 55785
AGGTCCATTCGAAGCTGTCCGTTGCCATAGAGAAACGATCCCACAACTTGGGTTACAAAGTGGAA
CGATCCACTCCGCGCTTTCACCTGTACCATATTCTTGCTTGTTATTCTTCAGGAATCTGCTCTAA
AGACCCGAAAGCAATGAGGTGCTGGTTCTGCGTGGGTTGGATAGCTCACCGGTCATGGGAGAGAC
TCCCTGGACATTTAGCATTGGTTCCGGAGGGTAAAGTGATCTCACATCGGCTTGGAAGAGATTGC
GGGACAATCTATGGGATACGGAATAAAATAGACTCACTTCAGCAAGGAAGAGTAAAAAAAGCGAA
AGAGGCTTTAGTTATTTAGCTGTACTTTGAGGGAAACCAAGATGCTTGGGAGAAAGGTTGAGGGT
TCAGAGTACCTGATAACCCCGCTAGGACTGGCAAGGGAAGGAGCACCGGGCCTACCTTTACTCGA
GATCTCCTGTGTAATAGCGGGACACTTCGACGGCAAAGAAGCAAG
Right flanking sequence: Indices 55833 -- 56332
ATACTTCTCAGCACTTTACCTATTGCTTCGCTCTAGTGACAACGTACCTTTGGTGGATAAACTTC
TACGAAAAAAGGCTAGAATAGGTAAGATAGTTGGAAAGCCAGAGGCTAGTGAAGGGCTTGACTAA
GGATTTCTTACCCTGTCTCTGCAAAGGCTTGTTAGAACTCTCATCACCCATATGGGGCAAAGGGT
GTCTACCTCAAGTACGGTTTACAACCCTGTGTCGCTTTCGGGTACAGGTTCCCTTTGTTGAAGGC
CGTTCGAGCTTTTCCTGGGAGTATGGCATGGGTTACTTCAGCGCCTGGTACTCGAACATTGGCTC
GAGGTATGAGTTGATAGAAAAAAGCTAAATGCTCTTAAGATCGTCTCTCTGTCTGCATTGTTGTG
GTACCTAGGCTTTCTGACAGATCTGAGCGTGCTATTACGCATTCAATCTTCTTGACATAAGTACT
AGGTTATCAAAGTGCAGGGAACGTATCCGGCATAGCTACAGGGGA
Found at i:60628 original size:18 final size:18
Alignment explanation
Indices: 60607--60641 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
60597 TTCTTATCTG
*
60607 TCTTAACCACCTTGGTTT
1 TCTTAACAACCTTGGTTT
60625 TCTTAACAACCTTGGTT
1 TCTTAACAACCTTGGTT
60642 GTTTCCTTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.20, C:0.26, G:0.11, T:0.43
Consensus pattern (18 bp):
TCTTAACAACCTTGGTTT
Left flanking sequence: Indices 60107 -- 60606
TAAATGCCTATATTGCTTTATAATGTTATTGTTATGTTGATGTTATATTAAAGAATGAAATCTAA
AAAAGTTGCTTAGTCCCATTCTTTATAATTGTCTTTCTCATACTGTGTAAACGAACTTCAAGTCT
GAATTGTGTACTGTACTCAACAGGAAGCGTCACAGCCCATCCCGATGTCATTCTCCATTCCAATT
GAAATAGCACAGAATCTAGCTCTCGCTATCGTGCCTCAGAAGCTCTAACTATGCCTTCATCCGCC
CCTCCGAAAGAACTCCAACTATTGGTTTATGCGCTCCAGTAAGCGATTTCGTCTCAAGTGCAGCT
TTTACGTTACGACTATACTTCGTTGCTGTGCTGCTCTCTGGGTTGTGAAAGAAGTGCAGTTTTTA
CGTTAGAGGGGGATCTCTCTGGTATACTTTTTACGGAGGTTTCGTCTTGTCAGTCTGGTTTTTCC
TCTCTGTTTTCTTAACAACCTTGGTTTTCTTGGTTTTCTTATCTG
Right flanking sequence: Indices 60642 -- 61141
GTTTCCTTAGTGAATTTCTTCATCTCATCTTGAAGATGATCTATCTTACTTTTCATCTCGGAGAT
CTCTCTATCCTTCTCTGAAATGATGCCGATCATCTCTCTATCCCTTTGAGAGAGTTTTTCACTGA
GAATCTCACTCTTAGTCTGAAGGCGATTCATTTCATTCCTTAGATAGAATACAATTTTTTCGCCA
CTGCGGGGGTTTATGTTAGACAGATCTTCTACATGTATAGGTTTAGTATCAATCCATTTATTATT
ACTATATACAGGTATCCTCTTTGTACCTCAAGTTCTATATAGAACAGATTTCTTTACAACTGTTC
AGGATTATATGAAAAAAGACCCTATCAATGTATGGGTTTATGATCGAATTCACAAGAAGAGGCGT
CAGGTTACTCTTAGAGTCCCTTCGGAAACTAGAGATAAAAGGAAGACTCAAGTATCTACCTTCGT
CAATTTCATTCACCAAAAGGATGCATATATTGCTATGAATGTTAT
Found at i:61665 original size:21 final size:21
Alignment explanation
Indices: 61641--61686 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
61631 TGTATTTCCG
*
61641 GAATCATTTGAGTCATTCATC
1 GAATCATTTGAGTAATTCATC
61662 GAATCATTTGAGTAATTCATC
1 GAATCATTTGAGTAATTCATC
61683 GAAT
1 GAAT
61687 TATAGTGTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (21 bp):
GAATCATTTGAGTAATTCATC
Left flanking sequence: Indices 61141 -- 61640
TTTTGGAAATGCTTAACCAGGGATCCCCCATATACACAGTTCATGACAACTTTATAACTACAGCT
GATCATAGCAAGAAACTGCCTGATACTTATGTCAATATATTTTGTAAAATGGATCCTCTTTCTAT
CATCAATGAGTATATCTATCACAATGTGATTGATTATCAAGAAAAATGATTAGATGGTGGTGAAT
TTGTTTACGATGAAAAAGGTATTGATACAGAAAACTGGAAAGGTATAATCAAGCAGGAGGATCTG
AAAAAATACTTGTATAAAAATATACCAGAAAAACAAAAAAAGAAGAAAAAGGATAGGGATACGTG
GGAACAAAAGATTCAAACCATAATGACTTCTTACGAGAACTATGTTAATTTCTTATGCGAACCTT
TTGATAAGAGTTTAGGAAAAAATGAAAAAAAAGATGTTTTCGAAGGTAATTAGTAAACTTGATCG
TGATACTAAGTATCAATATTATAGGGAGAAATTGATGTATTTCCG
Right flanking sequence: Indices 61687 -- 62186
TATAGTGTTCATTATTAAAGAAAAAAAGATGTGGACTGGACCCACTTACTTTTCTTTGTATTTCC
TGCTGAAACCAACCTAAGAGAAAGAGACCCAGGTGATATGGATTCGCTAGGACGGAGTTGCTGTC
GATTGAGGATTGGCCGAGGGGAGTGCCATCATGTAGCTGGGTACAAATAAGCCAGTGAAAGAGGA
GTAGTCAGGGTACGACGAAGCACGCCTGGTACGTAAGCGAATACGGATCACGTGGGTTTGTACTG
ATCCGCTTTCGAGCTGTCGAGTGACGATTGCTCCATCTATTAAGAAAGGACGCGGGGGGGCCTGT
CTTATAATAAAGGGGGTACTCTCTTCTCTGATGTGCGCTATATTATTGTGTCCTATTCCTGAAGG
AGTGATCCGGGATTAAGCCACGTGGCGATACCCGCCAAAAGAAAGGGGGCCTTTCGTACGGATTG
GAGTACGAAGAGAATTCTTCAGCACACTAAAATCTAGTGGATCCG
Found at i:95867 original size:39 final size:39
Alignment explanation
Indices: 95812--95890 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
95802 CCCATCCTTC
*
95812 AATATCATGATTGGGTCGACCAGGCCAGATCATGAGTGA
1 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
*
95851 AATATCATGATCGGGTCGACTAGGCCAGATCATGAGTGA
1 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
95890 A
1 A
95891 TAGAAAATCG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.32, C:0.18, G:0.28, T:0.23
Consensus pattern (39 bp):
AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
Left flanking sequence: Indices 95312 -- 95811
GGAAGCCGGCTTGTGCTGGATTCCTGCATACCTCTGGCAGGCATCGCAGCTCTTAGCATGTGCTA
CGTAATCTGCAAGGACCGTAGGCCAGTAGTGGCCATGTCTCCGGATCTCTCGAATTTCCCTCAGC
GCGCTCGATCTACCTATCTTTCTGAGTTTGATTGGTTTTCGCTCCAGCTGACCTTTCCATTTAAT
CACTGACAAAACCTACCTTTCAATTCTTCTTACCCTATGAGCTTTCAGCAAAGGACAGATTTCTT
GGTCCATTGACATCGATCAACGAAATAGACCTCCTTCTTTCACTTTTGTCGTTGTCTTCCAATTC
AAAGAGCCCCATTAAGTAAGTGTTCCGCGAGAAAAGAGAGGCTGACATCTTTTCTTATCTATCTA
TTTTCGTAAATGAAGAAGATAAGTGAGAGCTTACTGACTGCATCTTCTAAGAAGGGCTTGGAAGA
AGAAATAGAATCTCCTTTCTTTTTCGAGAAAAGGTCCCATCCTTC
Right flanking sequence: Indices 95891 -- 96390
TAGAAAATCGAAAATGTACATAGCAGTTCCAGCTGAAATACTTGGAATAATTCTACCACTTCTAC
TAGGAGTAGCCTTTTTAGTGCTAGCTGAACGTAAAGTAATGGCTTTTGTGCAACGTCGAAAGGGT
CCTGATGTAGTGGGATCGTTTGGATTGTTACAACCTCTAGCAGATGGTTTTAAATTGATTATAAA
AGAACCTATTTCACCAAGTAGTGCAAATTTCTCCCTTTTTAGAATGGCTCCAGTGGCTACATTTA
TGTTAAGTCTGGTCGCTCGGGCCGTTGTACCTTTTGATTATGGTATGGTATTGTCAGATCCGAAC
ATAGGGCTACTTTATTTGTTTGCCATATCTTCGCTAGGTGTTTATGGAATTATTATAGCAGGTCG
GTCTAGTAATTAGGGGGCGGCCGTTCGGTCGCCTATGATACTAGGATCAATAGGTCAAAAATGGG
TTTGTGCCGCAGGTGTTGAACGATCCACTCTACACAGGTGTGGGC
Found at i:105480 original size:1 final size:1
Alignment explanation
Indices: 105474--105514 Score: 73
Period size: 1 Copynumber: 41.0 Consensus size: 1
105464 AGGAAATTTC
*
105474 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
105515 AAATAAAAGA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
1 38 1.00
ACGTcount: A:0.02, C:0.00, G:0.00, T:0.98
Consensus pattern (1 bp):
T
Left flanking sequence: Indices 104974 -- 105473
TTTACTTTTTTGAATGCAGTTCGGGATCGAACGAGGTTCTTAAAAAGAAAGGCTATTCATCTTCC
CTTACGGGCTTATGGATCTAGTGGATCGTCCCAGTAAACTACTACTTATACTAATTATACTAACT
ACTTAGTTATCGTCACTGGCTGCAGATCTGGCTTGGCTCGATAGCCTATTGAATAGGATGGAGGA
AGCCTTGTCCCTAGCTTCTGAAACAAGAGAACGGACCGACTCTAACTAATCCACTCCTACTAACA
GGAAGTGTAAGGGCAGACCTCGTCCTACTTTCACTCTACTTTTTCCATTTCAATGCTAGCTCGAT
TGCAGCTAGATTTCTCAGTAGGGACTACTAATGGACTATCAGAAACGAAGTGAGGGATTGGACGA
CGGACGGGACAACTAGCTAATTGGGGGACGGAGGGACAGAGAGAACTCTTCAACGAAAATCAATC
TTGAAATTAAATAATAATAATCTCTATCGTTCAGTAGGAAATTTC
Right flanking sequence: Indices 105515 -- 106014
AAATAAAAGATAGAATCGTTCAGTAGGCTAATCTTCAAAGTTTATCGATTGAGACAGCGGCAGGC
CCAAAGAGCTCTACAGTAGTGCCTTGCGAGATCGTAGCTCGTTCACCTAAGATGGAAAAGCACTT
GGTTGAAAGCCTAGCAACGAGAAAAAAGAGTCCCATGCATCCTTTAGTCAACAACCATTAGTAAA
GAATAGGATCAGACCAAGTGCGAGATTGGATCAAAAATAACGTATAGAAAGGATTTGCAACAGAG
AGCCTCAACAGCAGCTCTTAACCCACACTTTTTGCTAGTCAATTGCATTTCAAGTTCCCGCACAG
TTGATCCAGCAAAAAATAGAATCTAGTCTCCGTGAGTCTATACCAATATTACACTTTCTTTAAAT
ACTTTTTTTCTATAGGTTATGTTATAAGGAAGCCGAATTTCCTAGGAAGAGAAGCGTGAGGAAAA
AGAACAGGGAATAAAGGAGAAAAGGAGGATTGAAGGGGACGTGTA
Found at i:108265 original size:24 final size:24
Alignment explanation
Indices: 108220--108265 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
108210 GAAAAGAAAC
* *
108220 TGGTTCACGTAAGAATGGACGTCT
1 TGGTTCACGCAAGAATGCACGTCT
*
108244 TGGTTCACGCAAGAGTGCACGT
1 TGGTTCACGCAAGAATGCACGT
108266 AGAAAAAGGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (24 bp):
TGGTTCACGCAAGAATGCACGTCT
Left flanking sequence: Indices 107720 -- 108219
ACAGAATCCAACCACACCGGAATGGATGGTACAAAGTCCTCCAGCTTTTCATACTTTTGGAGAAC
TTCCAGCTATCAAGGAGACGAAAAGCTCTGTGAAGTAAAAGAAAAAAAGGTCGCCGATTGCTACT
AAGAACCTAACAGAACTTTTCAAAATTGAAAACGGATCAGTCGACCTGGTCTACGAATCTATTCT
AACTATCAACGAATTCTTCAAATTTTAGGTGGGATGGGGATTGTAATTATTTATACTTCTCGAGG
TATAATGACAGACCGGGAGGCTAGATTCGAAGGAATCGGCGGATCAATTTTGTGTTATATATGGT
ATTCTGATATCCGAATTAGATCCTAAATTTACTATTTGTGAAAAAAAGAGAAAGGGCGGGTTGTA
TAATCTCACTCCTCCCCCATTAGTTGATACTTCAAGGAGGTTTTATCCGGAATGAATAAAAAAAG
AAAAAAGAAAGAAAAAGAAAATAAATAAAAGAAAAGAAAAGAAAC
Right flanking sequence: Indices 108266 -- 108765
AGAAAAAGGACTTATTCATGTTCAAGCAAGCTTCAACAATACCATTGTGACTGTTACAGATGTAA
GGGGTCGGGTGGTTTATTGGGCCTCCGCCGGTACTTGTGGATTCCGGGGTACAAGAAGAGGGACA
CCGTTTGCTGCTCAAACTGCAGCGGGAAATGCTATTCGTACAGTAGTGGAGCAAGGTATGCAACG
AGCGGAAGTGATGAAAAAGGGTCCTGGTCTCGGAATCCCATCTTCCAGGGTCAGGAGCCACGGAG
CCAGAAGACCGTTCGACGATCCTACTTCTGATGTCATCCCCTTCTGTTCCCTCCCTGTTGAATAT
CCCAACTATTCTCTATCAATTCCGGGATGGATCATGAAAGATTTTGTCTTGAAATGCCGATAAGG
AATAGCCAGTTATAGAAGCGGGTGGCAGGGAATGAAAGCAAGCACTCCTGTGCTATCAAAGTGGA
GAGATTAGTTAGAGCTAGGGGCAGGCCATCTATTCCTGCTTGACT
Found at i:120681 original size:18 final size:17
Alignment explanation
Indices: 120658--120691 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
120648 TTGATTTCGC
*
120658 CCATTGTTGTTGCGAGCT
1 CCATTGTAGTTG-GAGCT
120676 CCATTGTAGTTGGAGC
1 CCATTGTAGTTGGAGC
120692 GAGAGGAACG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.15, C:0.21, G:0.29, T:0.35
Consensus pattern (17 bp):
CCATTGTAGTTGGAGCT
Left flanking sequence: Indices 120158 -- 120657
GTATCCCGACAAGGTGAAAGCCATTCAGGAGATGCCGATCCCACGAACTAACTGAGAAAGAAGTT
CACGGATTACGAGAACAGATATTCAGCACTAGAACGGACGTGCTGCGCATTCGCTTGGGCTGCTC
TGGCAGTACATGCTTTATCACACAACTTGGCTCATCGCTCGCATGGGCGCACTGAAATACATATT
CGAGAAAGCCTCTCTCTCTGGGGGGATAGCAAGGTGGCAAATGCTCCTGGCGGAATACTACATTG
TTTTCAAGACTCTCAAAGCCATCAAAGGCCAAGCACTGCCAGTGTGTTCAGGGGTTAAAGGTATC
TTCCTGACCACTATCCAAAGGATTCAGGCCTCTAAGACAGTCCCATCATTCTTGAGAGTCTTTAT
TTGTAGCTAAAGGCAGAGGGTCCGTTACAGACAGGTGCGGAGAACTAGTTAAGGTGACTTGGGAA
TAAGGGCTTGGAAGAGCAATGCGTAGAATCAGTTGTTGATTTCGC
Right flanking sequence: Indices 120692 -- 121191
GAGAGGAACGATTATCAGAAGCAGCTGAAGTCTGAGACACAAAGGCTGATTGCTGCTCACTGTGT
TGTGCAGCTTGTATGCGATGAAGACGCGATTCTTGGTTAAGGACCTTAGTCCGCAGCTCCTCAAA
CGATGGAACAGTCTTAGAGTCGGAGATGGTTGTAACAAAAGCTTCATATTCAAAGGGCTTTGTAG
TGAAAACTACTTTGGGGACATAGAAGAGAGTTGATAGCAGCCAAGGCATCAACCATAGACTTCAG
TTCCCGTAAATAGGCATCCATAGGCTTGTTACCTTTCCTGTTATTCTGAATATCGAACTTCAATT
TCATTTCTTTAGCCGTGGACTGATAAAAAAATCTTTGCTCTAAAGCCATCCAAACATCCATATAT
GTTTTGTTTTCATATTCTATTGTAGACCCGTCAACATGTCCACTGAGAGTGTCGCGTTCAACCAA
GAGCGAACACTTTGATCCGTTCTCACCCAAGCACTATAAGCGGGG
Found at i:129388 original size:45 final size:46
Alignment explanation
Indices: 129277--129459 Score: 359
Period size: 46 Copynumber: 4.0 Consensus size: 46
129267 GTCTAACGCT
129277 TGCCTCCGGTGGCTAACCTAGGTTGAGCTGAAAACTCCAAAACTAG
1 TGCCTCCGGTGGCTAACCTAGGTTGAGCTGAAAACTCCAAAACTAG
129323 TGCCTCCGGTGGCTAACCTAGGTTGAGCTGAAAACTCCAAAACTAG
1 TGCCTCCGGTGGCTAACCTAGGTTGAGCTGAAAACTCCAAAACTAG
129369 -GCCTCCGGTGGCTAACCTAGGTTGAGCTGAAAACTCCAAAACTAG
1 TGCCTCCGGTGGCTAACCTAGGTTGAGCTGAAAACTCCAAAACTAG
129414 TGCCTCCGGTGGCTAACCTAGGTTGAGCTGAAAACTCCAAAACTAG
1 TGCCTCCGGTGGCTAACCTAGGTTGAGCTGAAAACTCCAAAACTAG
129460 GGTTCCAAAC
Statistics
Matches: 136, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
45 45 0.33
46 91 0.67
ACGTcount: A:0.28, C:0.26, G:0.24, T:0.21
Consensus pattern (46 bp):
TGCCTCCGGTGGCTAACCTAGGTTGAGCTGAAAACTCCAAAACTAG
Left flanking sequence: Indices 128777 -- 129276
CAAGATCGAAAAGAATGCATTGGATGGATGCCCGGGCATTGAGAAGGAAGGACGCTTTCAGAGGC
GAAAGGCCATGGGGAGATACCGTCTGTGATCCATGGATCTCCGATCGGGAAACCGTATCCAAGCT
CCGTGGCTAGTCTGCGCTCTTTGGACTTTTCAAACTTAGCGAACTGAAACATCTGAGTAGCTAAA
GGAAGGGAAATCAACCGAGACCCCGTTAGTAGCGGCGAGCGAGAGCGGATTGGGGCTTTGAAGAA
AAACAAAGACGAAGCTTCGTTCCTCAGCAAAGTGTTCATTTCTTTTTCGCCAGGTTTCATTCTCT
TTCTTGGATGATGGAAAAACCAGCAAGCTACGGCTTGAAAGCTTACCTTCTTCTCTTCTGGAGAA
AGGGCTTTCTTTATAGATGAAGACGTTGAGTAAGGGGGGCGGAGCTTGAAGAGCGAAGCGAGCTG
CGCTAGCCTATTACGTTTTTCAGCAGCAAGCTACGGTCTAACGCT
Right flanking sequence: Indices 129460 -- 129959
GGTTCCAAACCTTTCTCTAATAATCAGGTAAGCTTTCAAGCCCCTTGACTTTCTATTAGTTTAGT
CAAGGGCGCTGTGAACTGTAATTGTGAAAAGGTTGGAAGATCTGGCCAAAGAAGGTGATAGCCCT
GTAGATTCGTTCCCATGGTTCGATCCTTCCCAGTAAAACGCGGCGTGTTCGAATTCTGATCGCTT
TTACGCGAGAAAGGGGGACCACCCTCTAAGCCTAAGTATTCCTCAATGACCGATAGCGTACAAGT
ACCGTGAGGGAAAGGTGAAAAGAACCCTATTTAGGGAGTGCAATAGAGAACCTGAGATCCGATGC
GAACAATCAGTCGAAGGAGCGGAGCTTAGAGCCTTGACTTTCTATATTAGTCAAGCGCACTCACT
CTAACGGCGTACCTTTTGCATGATGGGTCAGCGAGGAAATGGGAACAGCGGCTTAAGCCATTAGG
TGTAGGCGCTTTCCAGAGGTGGAATCTTCTAGTTCTTCCTATTTG
Found at i:129433 original size:91 final size:91
Alignment explanation
Indices: 129278--129460 Score: 366
Period size: 91 Copynumber: 2.0 Consensus size: 91
129268 TCTAACGCTT
129278 GCCTCCGGTGGCTAACCTAGGTTGAGCTGAAAACTCCAAAACTAGTGCCTCCGGTGGCTAACCTA
1 GCCTCCGGTGGCTAACCTAGGTTGAGCTGAAAACTCCAAAACTAGTGCCTCCGGTGGCTAACCTA
129343 GGTTGAGCTGAAAACTCCAAAACTAG
66 GGTTGAGCTGAAAACTCCAAAACTAG
129369 GCCTCCGGTGGCTAACCTAGGTTGAGCTGAAAACTCCAAAACTAGTGCCTCCGGTGGCTAACCTA
1 GCCTCCGGTGGCTAACCTAGGTTGAGCTGAAAACTCCAAAACTAGTGCCTCCGGTGGCTAACCTA
129434 GGTTGAGCTGAAAACTCCAAAACTAG
66 GGTTGAGCTGAAAACTCCAAAACTAG
129460 G
1 G
129461 GTTCCAAACC
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
91 92 1.00
ACGTcount: A:0.28, C:0.26, G:0.25, T:0.21
Consensus pattern (91 bp):
GCCTCCGGTGGCTAACCTAGGTTGAGCTGAAAACTCCAAAACTAGTGCCTCCGGTGGCTAACCTA
GGTTGAGCTGAAAACTCCAAAACTAG
Left flanking sequence: Indices 128778 -- 129277
AAGATCGAAAAGAATGCATTGGATGGATGCCCGGGCATTGAGAAGGAAGGACGCTTTCAGAGGCG
AAAGGCCATGGGGAGATACCGTCTGTGATCCATGGATCTCCGATCGGGAAACCGTATCCAAGCTC
CGTGGCTAGTCTGCGCTCTTTGGACTTTTCAAACTTAGCGAACTGAAACATCTGAGTAGCTAAAG
GAAGGGAAATCAACCGAGACCCCGTTAGTAGCGGCGAGCGAGAGCGGATTGGGGCTTTGAAGAAA
AACAAAGACGAAGCTTCGTTCCTCAGCAAAGTGTTCATTTCTTTTTCGCCAGGTTTCATTCTCTT
TCTTGGATGATGGAAAAACCAGCAAGCTACGGCTTGAAAGCTTACCTTCTTCTCTTCTGGAGAAA
GGGCTTTCTTTATAGATGAAGACGTTGAGTAAGGGGGGCGGAGCTTGAAGAGCGAAGCGAGCTGC
GCTAGCCTATTACGTTTTTCAGCAGCAAGCTACGGTCTAACGCTT
Right flanking sequence: Indices 129461 -- 129960
GTTCCAAACCTTTCTCTAATAATCAGGTAAGCTTTCAAGCCCCTTGACTTTCTATTAGTTTAGTC
AAGGGCGCTGTGAACTGTAATTGTGAAAAGGTTGGAAGATCTGGCCAAAGAAGGTGATAGCCCTG
TAGATTCGTTCCCATGGTTCGATCCTTCCCAGTAAAACGCGGCGTGTTCGAATTCTGATCGCTTT
TACGCGAGAAAGGGGGACCACCCTCTAAGCCTAAGTATTCCTCAATGACCGATAGCGTACAAGTA
CCGTGAGGGAAAGGTGAAAAGAACCCTATTTAGGGAGTGCAATAGAGAACCTGAGATCCGATGCG
AACAATCAGTCGAAGGAGCGGAGCTTAGAGCCTTGACTTTCTATATTAGTCAAGCGCACTCACTC
TAACGGCGTACCTTTTGCATGATGGGTCAGCGAGGAAATGGGAACAGCGGCTTAAGCCATTAGGT
GTAGGCGCTTTCCAGAGGTGGAATCTTCTAGTTCTTCCTATTTGA
Found at i:131211 original size:18 final size:18
Alignment explanation
Indices: 131171--131213 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
131161 ACCGCCCTGC
131171 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
131190 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
131207 CATAGTC
1 CATAGTC
131214 AACAAGGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 130671 -- 131170
AGGGCTGCCGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTACAGAACCATGCCTGTC
TGTTGGAGCGAATTGGATGATCGGGCCGAGGGCTGCCCCCTCTTCCCCTCACTCTCCTTTCCCTA
ATATGAACCTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGCCCGGTCGCCCTACGCGACTGGC
GCTTCAAAAGGCGAAACTCTCGTCGTAGTTTGGCGACCTAAGGGGCGGACACTTTTTGTTATCTA
AAGGCGAAGACTCGGAAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGGCTCCGGCTCC
GCGCACCTGCTGACACCTTTCGAAGCACTTTCTAGTGTGCGCTTTAGTTTTCGAATGTCTCGTTC
AGCGTCACGAGTCTACAAGCCTTTCTCATTTCAGTGCTCGCCCTTTGAATCGGGCCTTTAGTCTT
TTGATTAGAGTAGGGGTCGCGAGAGAGCAGAGCGTACCGCCCTGC
Right flanking sequence: Indices 131214 -- 131713
AACAAGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACC
GTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAA
GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAA
AGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACAC
GATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAAGTCGGAAGGAGAAGTGTTATAAGCTTTGA
ATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGC
ATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAA
ATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTA
Found at i:132849 original size:21 final size:21
Alignment explanation
Indices: 132823--132866 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
132813 ATATCTAGTT
132823 TGAATTATAAGACCCTCTTTA
1 TGAATTATAAGACCCTCTTTA
*
132844 TGAATTATAAGGCCCTCTTTA
1 TGAATTATAAGACCCTCTTTA
132865 TG
1 TG
132867 CTCTCAAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.39
Consensus pattern (21 bp):
TGAATTATAAGACCCTCTTTA
Left flanking sequence: Indices 132323 -- 132822
ACCTATGGTGTACCAGTTGTTAGCAATAGCAGCGCCGGGCAGCTAAGTTGGTATGGAAGAACTGC
TGCGCCGCGGGAAATCCTTCTCTATACAAGTTCTCGGACGAGGTTTTTGAACAGAACTTCGATAG
GCGAGAGGTGTAAGCACCGCGAGGTGTGAAGCGATCTCGTACTAAACGAAAGAACTTTCACTTTC
CATAACCAAAATGAAAGAAAGTAAACCTATTCCTGCAATTGCGGTCAGTCTCGCTACCTCTTTAG
TTGCCGCCCCCTACTTGCTCATTCGCAATGACTACCACAAGAAAGCCGCCCCCTATCTCTAAAGG
GGCTTATGCACTCCACGACTTTCTTATGTTATGGCGAAGACTGAATTTAGCTTCCAACCCTAGTC
AGCAAGCTTCAAAAGTCCTTTCTCCTTTCTTTTCCGAAACTCAAATAGAAAACTCTCCCCATGGG
ACCGGGTTTTGAGGTTGTCATACCACTTTCATCCGATATCTAGTT
Right flanking sequence: Indices 132867 -- 133366
CTCTCAAAGACCGGCTTTTACAGAACTGAGATTCCATAGGCCGAAACGAAGCCCTTTAAAGGTAG
AATTAGGAGTCGAAGCCATGCATTTAGCCCGATTGCTATTCGCCCTTTTTAGCACTAGACTGACA
TTCTCATTTCGCTTGTTCAGTTCAACGAAAGCCGGTACTAATCAAGCACAGTTTAGCCCTATGAT
TGAATTGCGATAGTTGGATTCCCTCTTCCTATAGCTATGACTGGCAACCCCTATAAGTCAGTTTT
GACTCCCTCTTTTAAGGTCGAGACTATCTAAAAATCAATATGGTCTAGCTAGTTCTCACTTCCGA
GCTCTAACTCCTTACTTTCTTTCCCACCGTAGAACTCCAATCGAAAGGGGAATCTCCCCTTGGTC
CGCTTTCTCTATCTGGGGTTCATTCTGTTCGTACACATCTGATCCTTCTTTCTCAACCTTCAACT
TCTTCCGATCCTCTTTAAGCAGGAAGTGCGATCTGAAGGCCTGGG
Found at i:159144 original size:17 final size:17
Alignment explanation
Indices: 159122--159155 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
159112 GGGATCCTTT
159122 CTTTCTATCTTGACGAA
1 CTTTCTATCTTGACGAA
159139 CTTTCTATCTTGACGAA
1 CTTTCTATCTTGACGAA
159156 GGCTGGAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.41
Consensus pattern (17 bp):
CTTTCTATCTTGACGAA
Left flanking sequence: Indices 158622 -- 159121
AATTCTTTCACTAGTCTCAGAAGCTCTTTGAGAAGCTGTTGAGAGTAAAGAGGAATGCCCTTTTC
CCTTTAGCATAGATAATCCATCTTTCTTATTCTTATATATAGCTTACTCGAAGGTTAGCCCCCTC
TGCTAGCCTTGAGGGAAGCGAAAGAAGTCAGGCAAGTGAAAGTGAAGTTGACTATAGCTTTTTGG
CAAGCGATCTCAACAAAGAAGCATAGCTCAGTGACGACTATCAATTTACTAAGAGAAGAAAGATC
GGATTGTAGGCTAGATTCAAGGTATGCCAGTTTCTTGATTCTACTCAACTTTCCAGATTGGCTTA
GTGTTACATCTATCAACTGACTGAGCTTCCTTAGCTGACTGGGCTTTCAGCGCTGAGTTTCAAGA
CAAAGCGAGTTACAAGACTCTGGGACTAAGAAGTTTCTCTTCATCACGGGGCGCATTCGTCTATC
GATCTTAGTCTTAGAGAAATGGATGGTAGTAAGGAGGGATCCTTT
Right flanking sequence: Indices 159156 -- 159655
GGCTGGAAATGACAAGGAATTGATAAATGCCACTAATCATCCAACTTTGAGATGAAGGACATGGG
TGAAGCTAGTCTATTCTTTTTTCTTTTCAATTCAGATAACCTTTATGCTTATAAATGAATCCGTA
AGAAGCTATATTCATCTTGACTTCGTGACCAATCTATCGGACATAGAAGACTTAGTGTGTTTTAC
AGCTTGAGTCCCATTACATCTGCATCATATCCTGTAGGCGAGGAAGGAAACTGACAGCTTGATGA
AGAACGTTAGTTAGATTCGATTTAGTCTTGAGACAAGCCCGACTGGATAAAGAGAGGAAAAAAAG
ACAAATCTTTCTATCTTAGTGCAACTGAGCCCTGACTTGAGATGAGATTGAGAAGGCGAAAAAAG
AGCTATAATTGCCTTACGCTGCTCTGAGATCGTAAAGCCGTAAATCAGTCATTCTATTGTCATCC
CGTCTCCTTCAGCAGATCTTGGAGGCCTGGAAGTCGTTGAGTTTT
Found at i:160603 original size:25 final size:25
Alignment explanation
Indices: 160575--160638 Score: 128
Period size: 25 Copynumber: 2.6 Consensus size: 25
160565 CAAACTATAG
160575 ACTAATGATAAAATAGATAGATTAT
1 ACTAATGATAAAATAGATAGATTAT
160600 ACTAATGATAAAATAGATAGATTAT
1 ACTAATGATAAAATAGATAGATTAT
160625 ACTAATGATAAAAT
1 ACTAATGATAAAAT
160639 CGATGAAAGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.53, C:0.05, G:0.11, T:0.31
Consensus pattern (25 bp):
ACTAATGATAAAATAGATAGATTAT
Left flanking sequence: Indices 160075 -- 160574
CAGTCTCATGCTTCTATAAGGCTTTTAGAGACTCCACCTATTGTGATCCAACAGCCTATACGTTC
AAGCTTTCAAGCCCGAGCTAGTCTTCTTATCACCTAGCTACTTCACAGTCTCCTTTCGCGTACTC
CTCTTCCTATCTTCTCTCTTCACGAGACCTGTACATAAAAAACAAAGGTCTAGGTAGCTCATTTC
CTTCTAAGAAGTCAGATCTCCTTCTTCCTATATTATAAAAAGAATGAATAAGAGCCTTTCTTAAC
TCTTGAATTGTGTAAGGCATTTAGGAGCGCTCTTTGAATCCAACTAGAAATATCATAAGAGAAGA
AAGCAACTTCACCGAAAGGGCAGGTCTTTCTTTTTATTACTGATCTTATCAAGTAGTGCTTCGAT
AAGCCACCGCCCAATAGAGCTTAGTCATGTGTAGATCGAAAAGGTCTCGCGAAGCTGGTCACCGG
TAGGTCTAAGAACGGATTGAAAGCTTGATAAGCTGCAAACTATAG
Right flanking sequence: Indices 160639 -- 161138
CGATGAAAGTGCAAATGATACGGGTTGGATCTTCAGTGAGAATGAATTGATTTCGCAGTGCTAGG
GCGTTCATTCCGTTTCTCTTATTCATCGCTCTTCTGATGCTTTTCTATCTTCTCTGTCTTTCGAT
AGGGGGAATCTCGTTTTTTATTGATGTACTTTCAAAAGTAGCGGGCTTCATAGGGGTGAAGGCCC
TCTCTTTGCTTTTTAGCAAGATGGGCTGCTCCTCCGCTCTGGCCTTCGTGATTGGCTGTGCTTTT
CGAGCACTCGTCACTACGGAAGCAAGCCCCTCTCTGGCGCATTGGATGCTTCCCGGACCTTCTCA
CCAGCCTCACGTGGCAGAAGAGGATTACCTGCGGGACCATCCTGTAGCGCACCGAAGCGCCCCTC
CTGTAGGTCTTGAGGTGATCAAACCGGTTATAGAAGACGGGCAGCGTTACGACGAACTTGAGGGT
CGCCTCAATCGGCACCTCTTGGAGAATAGTGATCAAATCAGTACA
Found at i:168190 original size:20 final size:20
Alignment explanation
Indices: 168165--168204 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
168155 TTTGAAGAAA
168165 GATGACTTCTATTTTAAGAT
1 GATGACTTCTATTTTAAGAT
168185 GATGACTTCTATTTTAAGAT
1 GATGACTTCTATTTTAAGAT
168205 ATTGAGTTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.10, G:0.15, T:0.45
Consensus pattern (20 bp):
GATGACTTCTATTTTAAGAT
Left flanking sequence: Indices 167665 -- 168164
GATCTGGCTTTGAAGCCTCCTTGAGTCCGGCTTAGCTTCAGGTACGAGTCAAGAACAGAAGAAGG
GGATCGCCACAATCAAGAAGCAAGCTAAAAGCTGTTGTTTAGATGACTTTATGTTATGAAACAAC
CCAGAAAAAAAGTAATGATTGGAGTAGCCCGCCCAGTAGAGGCTTTCTTAGCGAAAAAAGTATAT
TCATGGATGGATTAGGGGAAAGAGTCTTCACCTTACTTTCAAGTGTCAATCATTTTTATTGAACT
TTCTTTCAGGCTAGCTCTGGGCAGGGCGCATACACACGAACTTTGAGTCGGATCCGAGCTCCAGT
AGACAGCGAGACAGCCATTGTGGTAAACGGGGGCAAAGCAAGGGAAAGAGAGGTGAGTGACGCCA
AGGGGAATTCCAGCACGAAAGCAAGTGTTGTTATCACACGTCCGTCCTGTCTGATTGATTCACCT
TCGATTATTCAATCAAGGAAGCAGAGTCAACGGCCTTTGAAGAAA
Right flanking sequence: Indices 168205 -- 168704
ATTGAGTTGGACAGTCAAAAAGCCCAAAGGCCAAAAATAAGAGCAAAAACAGAGGAGATGTCTTC
CTCATAGGCCATTGACTATCTATCCCCGGAGTCTTTCTCTCCGTCAAAGGGACTCTCTCTTTCTT
GAACAAGCACGGCGCTATCAGGACAAAATCCTAGCAGAAGCAGAAAAAGAGGAAGAGAAAGAGGA
GCGAACAGCCACTATCACATCGTTAGATGAGCTTCAGTTGCGCCCCTTTGTGAACGAGGGGATCG
AAAGGCCAGCCAAAGGAAGTACGGCTGAGTTTCAAGACTACGAGACTAAGAGTTGGGACTAGCCG
CATGTCATCTTTCTCAGAGTCTGAGCCTGACACCTCTATTATTACATCAAACAACAATTGAATTG
GGATCAAAGAATTAAGGGATTGGATTTGTCCCCGTCTGTCTTGTGTTCAACGAAGGAAAGCGCCC
TTCCTTCTTCAGCTTGAAAGACATCTCAGGAAAGAGCTACTTCAA
Found at i:186372 original size:31 final size:31
Alignment explanation
Indices: 186296--186375 Score: 79
Period size: 31 Copynumber: 2.6 Consensus size: 31
186286 AATATAAGTT
* *
186296 AGTAGCTTTCACATCCTTCCTATATATAGGA
1 AGTAGCTTTCGCATCCTTACTATATATAGGA
*** * * **
186327 AGTAGCTAAAGCATCCTTACTCTCTATAGTC
1 AGTAGCTTTCGCATCCTTACTATATATAGGA
186358 AGTAGCTTTCGCATCCTT
1 AGTAGCTTTCGCATCCTT
186376 TTCTTATCTA
Statistics
Matches: 37, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.26, C:0.25, G:0.14, T:0.35
Consensus pattern (31 bp):
AGTAGCTTTCGCATCCTTACTATATATAGGA
Left flanking sequence: Indices 185796 -- 186295
TCAAATACATGATCGGAGATAGGTCCGGCAATCGAAGAGACAAGCAATCATAGCAGGCACGAAGC
ACCAGAAAAGGGGTGGAGAACTTCTTTCGTCGAAAGTGCCAGAGGGGCCAACGCCTACCATATGG
GAGATCGACCTGTGAGGCAAAGGTGCGGCAAAAAAAGGTCTGGTACCAGCCAAGGTGGAGAATTC
CCCCATTTGCTTGCTTTCTATATTCTAATGATAGCCCGCCACCTCCCCGGTAGGGCATCTCCTCT
TTGACTCCTCTGATCTTGTACCTAAGGACTATGCTTTACTTTTCCATTAACTTCCTCATATCACG
TCTTACTGATATCTTATAGGTAATAGAGTCTCAAAGCAGGGTCCCCCCAATGACAGCCTTCTTGT
CTACTCACTTTTGATACTAGTACACCTTTGCGTGGTTTCTGTCTTCACTTTATGGCAATTCTCTC
GATCTCTGATAAGTCAGCTAAAGGAAGCAAACTCTAATATAAGTT
Right flanking sequence: Indices 186376 -- 186875
TTCTTATCTATGTTCTTACCTCAAGTTTCTTTCCTTAGGCAGGTTTCACACTAAAGTTGAGAAAA
GGCATAATAGAAAAGAAGTGAAAAGAAAAAGAAGTGGCGCTATAGAGTCTGATTCCCTATAATAA
ATAGAAGTGGAGGGGTTGCTTGCTATTCCCATATCAATCGATGAAAGAGAACTAGGGAGTGGTTA
GAAGAAGCTATTTAGGTAACCTTTGCTTAGAGGACCGGCTATACTACTAGTGACTTAGATCTTGT
GAGAAAGCAGAAAGTCGGGTGCCCGCAGCTACTTTAAATGTGAAAGGAGTGAAGTTAGCCTATCA
GTAAGCACTCCTTCTACTCTTTAGGAATCCCCTGGAAATAGAATGATGAAGTGATGGGTAAGCTC
AAGTAATCCCTACCTTCCCTAGAGAACTGAGAAGAGATAGAAGTCAGATTAGCTCTCCAAAATGA
GTAGAGAAGAAAGTCTAGCTTCCCAGGGAGTAAAGACGGGAAAGC
Found at i:187145 original size:45 final size:45
Alignment explanation
Indices: 187081--187206 Score: 189
Period size: 45 Copynumber: 2.8 Consensus size: 45
187071 CTTCTTTATA
187081 GGATTCTCGTCTGATTGAACAAGAGCGTATGCACCTTAAAAAAAG
1 GGATTCTCGTCTGATTGAACAAGAGCGTATGCACCTTAAAAAAAG
187126 GGATTCTCGTCTGATTGAACAAGAGCGTATGCACCTTAAAAAAAG
1 GGATTCTCGTCTGATTGAACAAGAGCGTATGCACCTTAAAAAAAG
*** * * * *
187171 GGAAGATCGTATGATTGCACGAGATCGTATGCACCT
1 GGATTCTCGTCTGATTGAACAAGAGCGTATGCACCT
187207 CCTTTTCTCC
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 74 1.00
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.25
Consensus pattern (45 bp):
GGATTCTCGTCTGATTGAACAAGAGCGTATGCACCTTAAAAAAAG
Left flanking sequence: Indices 186581 -- 187080
TTTAGGTAACCTTTGCTTAGAGGACCGGCTATACTACTAGTGACTTAGATCTTGTGAGAAAGCAG
AAAGTCGGGTGCCCGCAGCTACTTTAAATGTGAAAGGAGTGAAGTTAGCCTATCAGTAAGCACTC
CTTCTACTCTTTAGGAATCCCCTGGAAATAGAATGATGAAGTGATGGGTAAGCTCAAGTAATCCC
TACCTTCCCTAGAGAACTGAGAAGAGATAGAAGTCAGATTAGCTCTCCAAAATGAGTAGAGAAGA
AAGTCTAGCTTCCCAGGGAGTAAAGACGGGAAAGCCTTACCTCTTACGAGATAGAAAGAACCTCA
GAGAACGGAAAGAGCCAAGGTCGTAAAGACAAAGGCAGAAAAGCCTAGGTATAGGTAGCGAAAGT
CAAGGTACGAGACACCAAGGAGTTAGAAAATAATAGAACCTGTAACGGAAACAGAGTTTTAGCCG
GCTCATTAGAGCAAGTGAAATATGCGTCAAATTGGCTTCTTTATA
Right flanking sequence: Indices 187207 -- 187706
CCTTTTCTCCTTTATTCCGGGCAATAGATAAGTAAGTGAGTGCCCCGTGTACTTTCCCTATCAAT
TTTCATGTACTAGTTTTTATTGTATAGAGAAGAAATCTCGGTTCGAAGGTAGGTAGCTTCCTTTC
ACAAGCCTGTTTTCACTTCCTTATAGAAAGTAGGCTGCTACCGAACTCATTAGCAAGCAAACGGC
ATCGCCCTATCTCAAGCAGCTCACTACTCACTAAAGTCTATGTGAGAAACCAAGCTATTTCACTC
CTGTGGGATTCAAACCCACCGCATAGGCAGCTTTCGAATAGGCCTTGATTACACCGAGTAAGGAT
GCGAAAGCAACTGACTAAATATAGTCTGGAGCTGGACACCATCTTAAGTAATAGAACTCCCAGTT
GTGTTACACGAACCTTTCTTTCTCTTCTGAGTTCTCTTAGATGGGAAATGAAAACGATTAGCCCC
ACACGAGGTTTGTGAATTAGTGTACGTAGTGCAATCAATGCTCTG
Found at i:189732 original size:21 final size:21
Alignment explanation
Indices: 189708--189754 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
189698 TTCCTTCCCT
189708 TCTTCGGCGGATTCCGCTGCC
1 TCTTCGGCGGATTCCGCTGCC
*
189729 TCTTCGGCGGCTTCCGCTGCC
1 TCTTCGGCGGATTCCGCTGCC
189750 TCTTC
1 TCTTC
189755 AACAGCGTCC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.02, C:0.40, G:0.26, T:0.32
Consensus pattern (21 bp):
TCTTCGGCGGATTCCGCTGCC
Left flanking sequence: Indices 189208 -- 189707
TCCTAATGTTTTGGGGCATCCCGACAATTATATACCTGCTAATCCGATGCCCACCCCGCCTCATA
TTGTACCGGAATGGTATTTCCTACCGATCCATGCCATTCTTCGTAGTATACCTGACAAAGCGGGA
GGTGTAGCCGCAATAGCACCAGTTTTTATATGTCTGTTGGCTTTACCTTTTTTTAAAAGTATGTA
TGTACGTAGTTCAAGTTTTCGCCCGATTCACCAAGGAATATTTTGGTTGCTTTTGGCGGATCGCT
TACTACTAGGTTGGATCGGATGTCAACCTGTGGAGGCACCATTTGTGACTATTGGACAAATCTCT
CCTTTTGTTTTCTTCTTGTTCTTTGCCATAACGCCCATTCTGGGACGAGTTGGAAGAGGAATTCC
TAATTTTTACACAGAAAATGAAAACAGATCAAATGATTACCAGTAGACAACTCGTACTACGAAGG
AGTGAGATGGACGCTCTCATGGAGACGGATTGGGATTCCTTCCCT
Right flanking sequence: Indices 189755 -- 190254
AACAGCGTCCGACGCGCGAAGCGCTCCACTTGACTTTTTCCAATTATACCAAGAAATAGGTAATG
AGTGCGGCAGGCTTTTGCGTGAAGCCGGGATGGTATTACCACCGGGCTTGACCATGCCTGAAGCT
ATTCAGAGAACCTTTGGGGATGAAGCGGTTCGGTTATTATATGGGAATAACATTATTCATTTTAA
GCCCGGCTTTCTTAGGGAAACCTACTACGAGATTCTGATAAATAGCATTGATAGTTTGAGATTCC
AGGAGCTACTGTATTTGCTGGATGAGTTCAGCAAGGTAGCGTCGTAGTTTAGTAGCTGCTGAACT
AACGAAAGAAAAATGGAACCAGATACATTCTTAAAGGAATGCGCTTTGCCTTACACAATATAAAA
AAGAAAAAGAGAATAAAAATAGAAAGATGAAGGAACAAAGTTGACACAATCCCTTTCTTTCCGTT
GGTCAACAACCAACAAAACAAAATCGTTTAGTTCTTCACTACTCG
Found at i:189765 original size:21 final size:21
Alignment explanation
Indices: 189720--189765 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
189710 TTCGGCGGAT
** * *
189720 TCCGCTGCCTCTTCGGCGGCT
1 TCCGCTGCCTCTTCAACAGCG
189741 TCCGCTGCCTCTTCAACAGCG
1 TCCGCTGCCTCTTCAACAGCG
189762 TCCG
1 TCCG
189766 ACGCGCGAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.07, C:0.43, G:0.24, T:0.26
Consensus pattern (21 bp):
TCCGCTGCCTCTTCAACAGCG
Left flanking sequence: Indices 189220 -- 189719
GGGGCATCCCGACAATTATATACCTGCTAATCCGATGCCCACCCCGCCTCATATTGTACCGGAAT
GGTATTTCCTACCGATCCATGCCATTCTTCGTAGTATACCTGACAAAGCGGGAGGTGTAGCCGCA
ATAGCACCAGTTTTTATATGTCTGTTGGCTTTACCTTTTTTTAAAAGTATGTATGTACGTAGTTC
AAGTTTTCGCCCGATTCACCAAGGAATATTTTGGTTGCTTTTGGCGGATCGCTTACTACTAGGTT
GGATCGGATGTCAACCTGTGGAGGCACCATTTGTGACTATTGGACAAATCTCTCCTTTTGTTTTC
TTCTTGTTCTTTGCCATAACGCCCATTCTGGGACGAGTTGGAAGAGGAATTCCTAATTTTTACAC
AGAAAATGAAAACAGATCAAATGATTACCAGTAGACAACTCGTACTACGAAGGAGTGAGATGGAC
GCTCTCATGGAGACGGATTGGGATTCCTTCCCTTCTTCGGCGGAT
Right flanking sequence: Indices 189766 -- 190265
ACGCGCGAAGCGCTCCACTTGACTTTTTCCAATTATACCAAGAAATAGGTAATGAGTGCGGCAGG
CTTTTGCGTGAAGCCGGGATGGTATTACCACCGGGCTTGACCATGCCTGAAGCTATTCAGAGAAC
CTTTGGGGATGAAGCGGTTCGGTTATTATATGGGAATAACATTATTCATTTTAAGCCCGGCTTTC
TTAGGGAAACCTACTACGAGATTCTGATAAATAGCATTGATAGTTTGAGATTCCAGGAGCTACTG
TATTTGCTGGATGAGTTCAGCAAGGTAGCGTCGTAGTTTAGTAGCTGCTGAACTAACGAAAGAAA
AATGGAACCAGATACATTCTTAAAGGAATGCGCTTTGCCTTACACAATATAAAAAAGAAAAAGAG
AATAAAAATAGAAAGATGAAGGAACAAAGTTGACACAATCCCTTTCTTTCCGTTGGTCAACAACC
AACAAAACAAAATCGTTTAGTTCTTCACTACTCGTACAGGAAGGC
Found at i:198773 original size:16 final size:16
Alignment explanation
Indices: 198748--198787 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
198738 TACATCGTAG
198748 CGCA-AAAGAGCATCC
1 CGCAGAAAGAGCATCC
*
198763 CGCAGAAAGAGGATCC
1 CGCAGAAAGAGCATCC
198779 CGCAGAAAG
1 CGCAGAAAG
198788 TTTCCACCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 4 0.17
16 19 0.83
ACGTcount: A:0.40, C:0.28, G:0.28, T:0.05
Consensus pattern (16 bp):
CGCAGAAAGAGCATCC
Left flanking sequence: Indices 198248 -- 198747
GCTAAAATTCCAGCTTCAAGCGTTCTGCAGCTCATAATCATATTATGGAAAATGAGGCGTGGGAA
AACGGCACCGATTCTGTCCAATAACACAAAAAACTTATTTTTAAGTCCTTCGGCCTTCGCAAACA
AACAGCCCGGCCAACCCAAGTAATCCCCCATAACATCAATCAGTACCGCAAAAGGCTCAAAATCT
AAGTCTCCAGCAGCTGCGGAGCGGGGGATAAAGGAACAGCAGGATTACAACATTGCACAGGATCA
ATCAGAATGCGGGAGCGCAGAGCCTTTAAGAGATAGGGGGTGCGGGAGCATAATACTAAAGACTC
AAGATTCCCCCCGGTTTTTCATGCAGATTTGACCATGGTGTGCACCCCCCTTAACTTAACCCCTA
TTATGTAAGGGGGACCTTCGGCGGGATAAAAGAGAGTGCGGGAAAAGCAGCTACAGATACAGGAC
AAAAGAAGGAGTGGCGCACTTAAAGAGTAAAAAAGTACATCGTAG
Right flanking sequence: Indices 198788 -- 199287
TTTCCACCTTTCTGTCCAGCTGAAAAATGGAATGCAATAGTCTAAGATGCTTAATAGCTCCAACA
AGCGCGAAAGCCGTTGCTTCTTGCTTTCGAGCCCAAGCCTACGTTTGCTTAGTAAGGTTGCTTCT
TTTTATATCTCCTCAAAAAAGTAAAGGCGCGTTAGCGCTTTTTATTTATTTTCTTTTTCAATAAG
GGGCGGAGCTTGAAGAAGCGAGTCTATCAGAGAAAAAAGTGCTAGTTGTAGCGCGCTAGCGCACA
TTTGACTAAAAACATGGAAAGTCAAGGCTCTGGGCAACGAGTGGGAGGGAGCCTTGACTTGAAGC
ATTGTACAAGTGCTTAAGGCTCCTTCGGGCCATGGGCACAACTATCATATAAGGCAAGGCTTGGA
AGCAAGCTACCAGCGCCTATCGGCGGGAACTGGGCTTGTCTTGGTTAGTAGTGCCCGCCCATTCT
GTCTCGCCTGCCCGCCGACCCATGAATTCTTCAGAGCGGGCCGGC
Found at i:204840 original size:15 final size:14
Alignment explanation
Indices: 204820--204850 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 14
204810 TGCTTTATAT
204820 ATATATATAAAATAA
1 ATATATATAAAA-AA
204835 ATATATATAAAAAA
1 ATATATATAAAAAA
204849 AT
1 AT
204851 TGGATTCTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.25
15 12 0.75
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (14 bp):
ATATATATAAAAAA
Left flanking sequence: Indices 204320 -- 204819
CTAATAGAGTCGTTAGTTCAGCAGCTCTCGGAGAGAATTCCATGATTCTACTGATTTTGGATATA
AGGGGGAATACCGCTTTCAATTTCAAAGAGCTCTATTTCCGCTATTCTTATAGATCAGATTCGAG
CTTGTACTACTAGAACTAGGAGTTGAGATAGCGCGCGGAACACCAACACAATCCTTTGTTAAATG
TCTGCGAGCTCCTTCTTCTTTCGTGAAAGCATACGAGTCGTTATGTTAAGCATCTAATCCTAGTC
TTTATGTTCTCTGTGTTAGAGGAGTTAGATGTCCCTCATGTTGAACAGTCTGACATCAAGTTGTT
AGGACCTGAGTCGCTATGCGAACACTTAACACAAGACTGAAATCAAGCTAGAGTGGTTTTTGAAT
CAGTCATCAAGGATCTTAGCCAAACGGTGACCGGCTACGTAAGCACTTTGGGCGCAGGTTTCTCG
ATCGGACTTGACGAATTGTCATAAAGACATCACTCTGCTTTATAT
Right flanking sequence: Indices 204851 -- 205350
TGGATTCTAAAATAAGATTCAATGAATTAGAAGCATTCGCAGTTTTCAGTTCGTTTGTCATCATC
TTTTCTCCTCATCGCTAGCCTGTTTCCAAGAGGGGGAAGAGAAGGTCTTTCAAGTTGGAGAGCAT
ATGAGATTTCTCCATCGCAGCATTGCATCTATCGACTGAACAAAGTAACTTTCGAAGTGGACTGG
GAAGGAATGCGAATAGGTATTTCAATTGTTGGACTAAATGAATAGGCAAGGAAGGCAAGGCACTT
GACTGAAAGGTCCTACCCGACTCATTCTTAGGACAGGCTTAGCTCTAGCTATCTAAAATGAAGAA
ATTGTACAAGGGATCAATCCTATTTCACAAAGTAACTTCTCAAAGGTCGAAGGCGTAGTATCGAT
TACTTGTGTTGGACTACCTTTATAGGATAGATCTGATATACTGTTAGGTTTTGGTTGGACTGCTT
GGTACGGAATTCACTGAGATTGACTTTAGATATCGCATTTCCGGT
Found at i:208642 original size:28 final size:22
Alignment explanation
Indices: 208565--208621 Score: 105
Period size: 22 Copynumber: 2.5 Consensus size: 22
208555 GGAGAAGTGA
208565 TACCTGTCGACCGTGAGGGAGAC
1 TACC-GTCGACCGTGAGGGAGAC
208588 TACCGTCGACCGTGAGGGAGAC
1 TACCGTCGACCGTGAGGGAGAC
208610 TACCGTCGACCG
1 TACCGTCGACCG
208622 ACCTTAGGAG
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 30 0.88
23 4 0.12
ACGTcount: A:0.21, C:0.30, G:0.33, T:0.16
Consensus pattern (22 bp):
TACCGTCGACCGTGAGGGAGAC
Left flanking sequence: Indices 208065 -- 208564
CGTGAACCAGAAAGAATGAGCCGCTTCAATACCAAAAGGAAGAAATCAGCACTTGCTTCTTGAGC
TGGTACAACAACTCCAGCAAGAAGGATTAGCCGATTAGAAGGCATGGCCAAGGGTACTACAAGCG
GAACCCCAGTCCCAAGCTATAGGACGACAGATGAATTAGGCGCTGACTCCAAGACTGATACGATA
GGCTTTGAGTCATCAGTTTGATCTCCTAGATGAGAGGGCTATGGGTATAGACCCGAAAGCACCTT
CACTGGCCATGGACTACTCAATCAATCGGACAACCGCTTCACTACTTCCAAGACTGAAAATCCAA
TGATAGAAGAATCGACTGCAGCAAAACTTCCTAAACTAGACTAGAATAATCTTTCGTAGCAGTCA
AGGATGAGTTCGATCCATTAGGTTCTTCGATTTGTTCAGAGGGAGTGGGAAAGCTACATAAATTC
TTTGGAAAAGCCTGCTTGGAAGCTCTCTTTTAGTCGGAGAAGTGA
Right flanking sequence: Indices 208622 -- 209121
ACCTTAGGAGGGAGACTACCGCCCCTGAGGGGCTTGTTGCTAGAGGCATCCCCTCAAATGAGATT
TATCAACTCTACAACAGCTCCGGTTTTAGCAATAAGAGCCCGCCTTCCGGGTCCTATATTCTAGT
TACTAGCTTCAAAGGAACTACTAAAAGAAGGAGTCAAAGCATCGGATAGTGCTACCTACGAGTGA
GTCACCCGCCTGGTTACCTGTCCTTATGAAGGAAGGTGCGCATGAAAGTCTTTACGGAAGACCAT
CAAATTACTGATTAGGAAGGTATTTAAGGAATGAACTTCTATTACAGGGATTCTTTTATTAAGAC
CTTTCGGATAGATAGCCCTATTGAATGAAGGTTGAACACCAACCCGCCTGGAAAGCTAAGAGTCG
GCAAAGACCTAGCTGTCGAGGAATGAAAGAAGTCGCTTTCTAGGAGAAGGAGTACGAGGAAGTCA
AGTCACAGGCAAGCAACCAACAGGCTAAGAGCTATCTCCCAACCT
Found at i:222508 original size:31 final size:31
Alignment explanation
Indices: 222470--222531 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
222460 ATATGTCATA
222470 CCTTCTTTCGAATCAATACCATTCCATGAGT
1 CCTTCTTTCGAATCAATACCATTCCATGAGT
222501 CCTTCTTTCGAATCAATACCATTCCATGAGT
1 CCTTCTTTCGAATCAATACCATTCCATGAGT
222532 GTCCTGTGGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.26, C:0.29, G:0.10, T:0.35
Consensus pattern (31 bp):
CCTTCTTTCGAATCAATACCATTCCATGAGT
Left flanking sequence: Indices 221970 -- 222469
AATATGGGCACATACTAGAAACTGAGCCAGGCACATCCCTGTTTTCTTGTCTTAGCACTTCAAAT
TAGCTGCACCCTTCCAAGTTAGTCCAGGAGCCCTCTCAGATGCAGGTCTTTTCAAAGTGCAAAGT
TTCAGTGATCACTTATGCAATTGTGAGTTGCTGTTTTGAGTTTCCTGCTTTTCGGGCTGTCCTCT
TTTAGGGAAGGGAGCGTGCCCTAGTAGCATGAGACGACAGCCTTGCATAGGAGTAGTTCTGACTC
CGAGAATAGAATCTTATCCCCGCCGACTAAGCCCGGACTCTTTCGCATCGCGCTAATTCAGTGCC
AGCCGTTGGTGAAAGACCTGCATGGAGCCGAGCCCTTCTCACCTACCTGCTTTGGGGAGAGTTTG
ACCCGGACAAAACTAGTGGGTGTCGCCTCCTCGAAGCAGCTCCCTCTCGCCCCGATTGATGAAGT
CCCTGATTGAGAACACCATTGCTAACTTATGTATAATATGTCATA
Right flanking sequence: Indices 222532 -- 223031
GTCCTGTGGGTCTGATCAAGGCCAGTAGCTACGCCCTGCACTTTTGATAACCGGTTAGATATCCT
AGCACTTTAGAGTTTGAGAAGGGTAAAGAAAATCGTCCTTTCTTTTGAGATCTGGACTCCTGAGG
GAGGGTAATTTGATGCTAGCGAACGTTGTGGGTAACAAGGCGAATGAGTCAGTATCTAGTAACGG
CTAGGATGCCAAGCGATGCAATGTAAAGAAGAAGAAGGTTTGGATGACCTCTGGGGGAATAGCAC
GCCCACAGAACGATATCGTGGAAATGCTGCACGGACCCGTATATATAGGAACAGAAACAAAATGA
CTTTTGGAGTTTGACGGTCCGTCCTCAAACCCACCTGTTGCCGATCCGACGTGGTAAAAGCAGAT
CGTGATTGATTGCTCTTAGAACACGCCGATACGGCACGCTCTCCCGGGTTCCAAGTTCTCTAATT
TGAGTGACGTACGATTCATACGTACGCACACTCAAAAGATGCCCT
Found at i:233482 original size:18 final size:18
Alignment explanation
Indices: 233450--233489 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
233440 CTGGTCGAAT
*
233450 TCAAGGATTCCAATCAGC
1 TCAAGGATTACAATCAGC
* *
233468 TCAAGGATTAGAATCAGT
1 TCAAGGATTACAATCAGC
233486 TCAA
1 TCAA
233490 CACTGCAGTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.20, G:0.17, T:0.25
Consensus pattern (18 bp):
TCAAGGATTACAATCAGC
Left flanking sequence: Indices 232950 -- 233449
TTGCCTGTAGGCTGATCTCCATATGGATGCGCGAGTGAAGGCCTTTCCTCAACTTCAACTGTTTT
GTTTGGGACGCTCCGGCACATTAAATGCGAGAAGTGCGCTATTTCCCAATCCAAATAGTCAAAAC
TCACGTAATCGTAATAAGAAGAGTTTCTCCCTTTTTCTTCTGTAAAATCCGAAGCAGCTACGCCT
ATTGAAAGAAGAAATCTTCCCCCGTCCTTTAACCTGGACTCCATTCTTCCTCTAGAAGGATAATG
GGATCCAGACTATAATCAAGCTATGATCGTCAAATTTCATATAGAAAGATCAGGTTATTGCTGAT
CATCTGGTCTATCGCTCCTTTTGAGAGTGACATAAGCCTTTCCCCTGCAGTGAAGTTTCTTCCTT
CCCTGACTTACTTGAAAAAAGGCTTTTCTTTTCCTCCGCTCGTAGGAAGCTAGGCACAAGACGCA
GACGATCAGACGAAAAATGAGATGATACCTATTCCCTGGTCGAAT
Right flanking sequence: Indices 233490 -- 233989
CACTGCAGTCCATGTGAGGCTAGATCTTCAAAGAGGGTCATCTCTAGCTAGCGCTCAAGATCGAT
TCAATTCCATTCAAAATCTCGAGTATCGAGCAGATCATGTAAACCACCCTTATAATCAGAAGCAC
ACGCCTGAAAAGGGCCTCGAACACTCATTTTAAGCAACTCTTGCCTGAGACAGCTAAACCTGGAT
TGGGCTCTTTTAACCTCTCCTTTTCAAAGGCCTTCCAGAAACCCGTAATGGATTAGCTGAACTGA
GGAACCACAGCCTAGCGTTTAATTGGAATCGTTAACTTCATTGTTGCCTTCGACCAAGGGATAGT
TTTGCAATTCTCAGTAAAGGTTACTAAAGCCAAAACCTCATTGGTGGTCTCTGACATCAAAAATA
CGTGGACATCTAAGAACGTCGATTTCAGATTAGTCAACTTTCATTGAAAGAAAGAACCGAGACAG
CAGACAAGAGCCTTCTTGGCAAGCCCGATCACGGTTTGACTTCCT
Found at i:242397 original size:27 final size:27
Alignment explanation
Indices: 242359--242410 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
242349 ACTTGTCAAT
*
242359 AAACAATTCTATGTTCAATTTGACTAC
1 AAACAATTCTATGTTCAACTTGACTAC
*
242386 AAACAATTCTATGTTCCACTTGACT
1 AAACAATTCTATGTTCAACTTGACT
242411 CCTACCCATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.35, C:0.21, G:0.08, T:0.37
Consensus pattern (27 bp):
AAACAATTCTATGTTCAACTTGACTAC
Left flanking sequence: Indices 241859 -- 242358
AGCAGTAACGCTCATAGCAAGCAAGAAAGATGGGGTAAAGGGGCGAAACGGCGGGAAATAAAAGT
TCAGTTTATAGAGTCGGAGAGCTAGTAGAGCTCATAGGTTTCTACCTGTGACTAACTTAGTGTGC
TTTTGGTAGCAGCAGCCATACCAACAATCTATCTTTCGTAAATAAGCACTCACATTACGGTGCGA
GATCTGCCAAGCTAAGCTCAATCACAACCCACCGGCGAGTGAGGGCTAAACGGTATTTATAGATT
GAAACTAGAAAACCTTCATTCCTGAACTAGCCTCATGAACAAGCCAGTCTCAACTTTCCTGTTCA
ACTTTCTAGTGCGTCTATCTAAGGATAGATCTCGGTATCTGTGGAGAGGAAAAGAATGAATCCTA
CTAATGCGTCAAAATCTAAAAAAATTGATTTGTATTCCCCTTTCTTTACAGGTCTCGTGTTCCCC
CTATTGAACGAAATGCAAAAACCACATACCCACAAACTTGTCAAT
Right flanking sequence: Indices 242411 -- 242910
CCTACCCATACCGTGTTCAATTGTACAACTACCAATTCAATCTTGAGATTTAGTAAGAATAGCAG
ACGGTATACTAGTCAGGACTCTTCTTTTCTACGAACAAGTCAGTACTCGCACTATTGGGAGAACA
TGCGTCAAAGAAGGTCGTTTTCTTTTCCGTCCTCGCACTATTGTACGAATTTCTCCCTGTACCTA
AAAAGTCTTTATTTCACGCTGGAGCATTTGTAAGCGACGGGATCTTAGCAGCTTCTTCCCGAGTT
GCATTAGCTAAAGTGGATCTACGATCACGGGAACTAATCAATCGGTCTGTTCTGCCCCATAAGCA
TCTGGATGGTCTACGATCAGTGCTATTCGTACACCCTATGCCTGATTTCGCAACTTCAACCCTTT
CCCTATCCAATGTAGCTGTAACTGCGCCTTATTGGCTTCTTTTCAGTTAACAAGCAAGTACGCAA
ACAGCCTTCGGTTCCTAACAAGCTAAGCACCTACCCGGGGAACTA
Found at i:271959 original size:24 final size:24
Alignment explanation
Indices: 271932--271984 Score: 106
Period size: 24 Copynumber: 2.2 Consensus size: 24
271922 CTCATTCAAT
271932 CCCCTTTGCTCCAGCTTTCATCTA
1 CCCCTTTGCTCCAGCTTTCATCTA
271956 CCCCTTTGCTCCAGCTTTCATCTA
1 CCCCTTTGCTCCAGCTTTCATCTA
271980 CCCCT
1 CCCCT
271985 ATCTTTCTGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.11, C:0.45, G:0.08, T:0.36
Consensus pattern (24 bp):
CCCCTTTGCTCCAGCTTTCATCTA
Left flanking sequence: Indices 271432 -- 271931
CTTTTTAACCGAAAGAGAGACTGAACCAAGGAAGCAACCATACTGACTGAAGCCAGAAGAAGCGC
GGGGACTGACTATCAGACAGAACGGAAGAGAATTGATAGCTCAGGAAAGACTTTATCTCAACTTA
GTCCTCAGCTCGTGAATCAGGCTATCCTTTCTGATGCTCCTTATGTTTTTACCAAAAGGTAAAAC
ATTTCCTTCCTTTCTAGGTGTTAGCAGGCTCTCAATCAATGCGGTTCGTCCCATTCCTAAATCAG
GTTGACCATCGTACCAGTATTCAGGTTCATTCCTGACTTTCACATGGAAAAGGTTTAGGGTTCAG
AGTACCTGATAACCCCGCTAGGACTGGCAAGGGAAGGAGCACCGGCGAGTAGACCAGTGAGAGCC
CTCCATCAAAGGTCGATATCTTACCTTTAAAGCGGGTATAAGAATTGGAAGTCGGGATATCCCAA
TCTTCCAGCTCTCAAGCAGTTCAGAAGATTCATCCCTCATTCAAT
Right flanking sequence: Indices 271985 -- 272484
ATCTTTCTGCTTTCTTCGTCTATGCCTATGCCTCCAGGGATGGATCCAATTTCCTGTCCTTTTTT
GGAGAAAGAACCAAATGATTCATCTTGCTCCCTGTGCAACCTGCCCATTTTTTTAACTGTCTACA
GTTGTCAGCCTGCCATTCAATGCAATTCACATGAGCTTAGGAACCAGTCATGAACATTTTCTCTT
GGATAAAGAGGGAGCAAGAGTAAGCCTTCTTGATTCCATCAGTTATGCCCGGTAGAGTTCAGATC
AGTCCTGGAAAGACTTCCTGGCACTTAGGATTTTCCTGATGACCCAACTGGGATTGTAGCCTGGT
CAATTTCTTGCTGCTTCAGATAGTAGGTATGGACCCAGCCACAGTCTTTTCTCAAGGACCCGGAG
ATGTTTACAAATGCTTGTTCCACAGGTCAAGACACCCCTGCAGAAAGTTGGTATTCAAGAGACGG
AAACTATGTCAAGAAGGTGGAACTAGGAATAAGAACAGGGACCCA
Found at i:273319 original size:34 final size:34
Alignment explanation
Indices: 273281--273348 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
273271 GTCCGCTGTT
273281 GCAGCCTTGTTGATCACTTTTGGTATTTTCTTTC
1 GCAGCCTTGTTGATCACTTTTGGTATTTTCTTTC
273315 GCAGCCTTGTTGATCACTTTTGGTATTTTCTTTC
1 GCAGCCTTGTTGATCACTTTTGGTATTTTCTTTC
273349 AAGGTTATAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.12, C:0.21, G:0.18, T:0.50
Consensus pattern (34 bp):
GCAGCCTTGTTGATCACTTTTGGTATTTTCTTTC
Left flanking sequence: Indices 272781 -- 273280
TAACAATTTGAATAGAATATGAATAGGAACAGCCTTCAGAGAAAAGAGACATAGACAATGTATCC
TGAACAGTATGGCAATCTCTTCCTCTTTCGATTGGCAAAGAAGCAACTCCTTGAGCGGCTCTATC
AAGGAGCAGAGGCAAGGAAGATTCTCCAGTGGTCATTAATAATGCACTTTGCGGTCCTTATTGGG
TGCTGGCGAAGCATAAGAGGAGATTCTTAACGTCAGGAACTACAATCAAGTATACTCTTTCAGTC
GAAGTTGGTCTTAATCGTCCGAGCAGAGAGCTCTCACTCAAGTCAAGCAGATCCGGCAGGTAGCA
ACATGTCTGTGGTATCGGAAGAGCTGCATTCATTAGTATGTTAGTTCATTACTTCCTTAGTCCTA
ATGAGTTCAGTCGCTGCGCAGTATTTCCCTGCTGGATGTCTGGCCTCTAGATAGGCCTGTAACCG
TAGTTAGGAATTCTCCTGTATGAGGTGTTGGTGTAGTCCGCTGTT
Right flanking sequence: Indices 273349 -- 273848
AAGGTTATAGCCTTGTGTCCTTAGACTTGCCTTTCGTGTGTGTAAGTCCTTTAACAAACACTTCC
GCTGCCCTCGTGTTTCAGCCTTTATTGAGCAGTATGTCCCACCTTGCGACTGTTTGGCTTTAGCT
AGATCTTTGCCTAGCTTTACCGTGTTATATGGCTTGACCGAGCTCGGGTCTCAGTCTTTACCTCG
ACTGTTGTGGGCTTGGGCTAAGCTTTATGCTTCAACCTTGCCTGTCGTTCTTCGTGTCTTGCTAG
TCGTAGATTAGGTTGTAACTCAAGCCTTTGCGTTGCTGTAGATTAGGTTGTAACTCAAGCCTTTG
CGTTGCTGCAGAGGGCTTTGGCTCTATGCTCCTCCCTCTGCTTTTCTTTCTGCGCTTATTGACGC
GTTTTGGGCCCCTTTTTGTTAAAGGACTATTAACGTCATCTAATTGTGCACGGATAAGAGCAAAT
GTTAGTGCGAATAATTCATAATAAGAACTTTAAGAGTTCTTTTAT
Found at i:273652 original size:35 final size:35
Alignment explanation
Indices: 273611--273681 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
273601 CTTGCTAGTC
273611 GTAGATTAGGTTGTAACTCAAGCCTTTGCGTTGCT
1 GTAGATTAGGTTGTAACTCAAGCCTTTGCGTTGCT
273646 GTAGATTAGGTTGTAACTCAAGCCTTTGCGTTGCT
1 GTAGATTAGGTTGTAACTCAAGCCTTTGCGTTGCT
273681 G
1 G
273682 CAGAGGGCTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.20, C:0.17, G:0.27, T:0.37
Consensus pattern (35 bp):
GTAGATTAGGTTGTAACTCAAGCCTTTGCGTTGCT
Left flanking sequence: Indices 273111 -- 273610
TCTGTGGTATCGGAAGAGCTGCATTCATTAGTATGTTAGTTCATTACTTCCTTAGTCCTAATGAG
TTCAGTCGCTGCGCAGTATTTCCCTGCTGGATGTCTGGCCTCTAGATAGGCCTGTAACCGTAGTT
AGGAATTCTCCTGTATGAGGTGTTGGTGTAGTCCGCTGTTGCAGCCTTGTTGATCACTTTTGGTA
TTTTCTTTCGCAGCCTTGTTGATCACTTTTGGTATTTTCTTTCAAGGTTATAGCCTTGTGTCCTT
AGACTTGCCTTTCGTGTGTGTAAGTCCTTTAACAAACACTTCCGCTGCCCTCGTGTTTCAGCCTT
TATTGAGCAGTATGTCCCACCTTGCGACTGTTTGGCTTTAGCTAGATCTTTGCCTAGCTTTACCG
TGTTATATGGCTTGACCGAGCTCGGGTCTCAGTCTTTACCTCGACTGTTGTGGGCTTGGGCTAAG
CTTTATGCTTCAACCTTGCCTGTCGTTCTTCGTGTCTTGCTAGTC
Right flanking sequence: Indices 273682 -- 274181
CAGAGGGCTTTGGCTCTATGCTCCTCCCTCTGCTTTTCTTTCTGCGCTTATTGACGCGTTTTGGG
CCCCTTTTTGTTAAAGGACTATTAACGTCATCTAATTGTGCACGGATAAGAGCAAATGTTAGTGC
GAATAATTCATAATAAGAACTTTAAGAGTTCTTTTATTTCATACTTGGGCTCTACTGGCCTTTCT
TACAAAGCATATTGCTAATGACAATATGGAAACGAAGTACTTTTTCAGGACATCTGCATTAAAGC
TGTTTTTCAGTGGTTCTCCTTCTACAGTCATGAGCTTGTATGACCCTGGTGCCACCTGCTCGCAG
ATCTGGTAGGGGCTTTCCCTGTTGGCTGTGAATTTTCCATGTACATTTACCTTTCCTACCGCTGT
TGTTCTTCTCAGCACCAGGTCTCCCTCTATCAAAGGTCTGTGCCTGACTCTCCTGTTTTCAATCC
TGCTCATCCAGTTATTCTGTGCTGCTAGCTTAAGAGCTGCTTGGA
Found at i:291299 original size:24 final size:24
Alignment explanation
Indices: 291271--291318 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
291261 TAGTTTCCGC
291271 TTATAGTCTTACCAAGGTGTAGCG
1 TTATAGTCTTACCAAGGTGTAGCG
291295 TTATAGTCTTACCAAGGTGTAGCG
1 TTATAGTCTTACCAAGGTGTAGCG
291319 CATAGCCATC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (24 bp):
TTATAGTCTTACCAAGGTGTAGCG
Left flanking sequence: Indices 290771 -- 291270
GAGGCTCCACTCTATCCTGTTGATAGCTGGAGGAAGAGGGAAAATAGGAATAATACCCTGCTTTT
AGGGGGACTCAAGTAGATTCCCTCATCTTTCGCAACTCGATTCCCTCATCCATAAGGACAATGGG
AAATACGAATCCCTAGGACAATGGAAAACTTTATACCTTTCCTTTACTGTAAAGTGAGGCACTTA
TTAACTCCTCGGACATTCACAATGTCAGTAGCTTGCTGTCTTCTCCCTCACAGCGCATTCCTTTT
GAAAGCAGGGGTTGCCAGCTGAAAAAAAGTAGACCTATATTCACCAGCTGTCTTTCTTTCAGTTC
CGTTCCAATTTAACCTTAATAGGTGGGCTGGGATACTAGCAGGGAAGAGGAATTAAGTAATCGCT
TTTCAAAGCTCTTTACCTAATTCGTGTGTCACCGCTGAGATGGTTGTTGTTCGAAGACTTACCGT
GAATAATAGAATAGGTTGATGAAAACGAATCTTATTAGTTTCCGC
Right flanking sequence: Indices 291319 -- 291818
CATAGCCATCTACTTGTATGCGAAGGCTGTTAAGCTGTTGTATAGGAATGCAACCTATCCCCCTC
CTATGAAAACCCTATCAACCAAGAATCCAATGGAACTAGACACCGGAAGATAAGAGGATGGAAAC
AAGATGTTAGCAAGCCTGCTAGACCGTGTTTACTCATGCTCTGGTTACTACCCATCCTCAATTGT
TTTTTGCTAGCTATCCTAGCAGTTACTAGATGCTGACTCATTCCCTTGAATTATTCTCTTTTGTT
TTGCTCCCTCACACCTTGAAGAAGAGCTGATCTTTCCAGGTCCATTCGAAGCTGTCCGTTGCCAT
AGAGAAACGATCCCACAACTTGGGTTACAAAGTGGAACGATCCACTCCGCGCTTTCACCTGTACC
ATATTCTTGCTTGTTATTCTTCAGGAATCTGCTCTAAAGACCCGAAAGCAATGAGGTGCTGGTTC
TGCGTGGGTTGGATAGCTCACCGGTCATGGGAGAGACTCCCTGGA
Found at i:292141 original size:20 final size:20
Alignment explanation
Indices: 292116--292162 Score: 76
Period size: 20 Copynumber: 2.4 Consensus size: 20
292106 AAGAAGCAAG
*
292116 TAAGGATTGCTGTACTGAGC
1 TAAGGATTGCTGTACAGAGC
292136 TAAGGATTGCTGTACAGAGC
1 TAAGGATTGCTGTACAGAGC
*
292156 TACGGAT
1 TAAGGAT
292163 ATACTTCTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.30, T:0.28
Consensus pattern (20 bp):
TAAGGATTGCTGTACAGAGC
Left flanking sequence: Indices 291616 -- 292115
AGGTCCATTCGAAGCTGTCCGTTGCCATAGAGAAACGATCCCACAACTTGGGTTACAAAGTGGAA
CGATCCACTCCGCGCTTTCACCTGTACCATATTCTTGCTTGTTATTCTTCAGGAATCTGCTCTAA
AGACCCGAAAGCAATGAGGTGCTGGTTCTGCGTGGGTTGGATAGCTCACCGGTCATGGGAGAGAC
TCCCTGGACATTTAGCATTGGTTCCGGAGGGTAAAGTGATCTCACATCGGCTTGGAAGAGATTGC
GGGACAATCTATGGGATACGGAATAAAATAGACTCACTTCAGCAAGGAAGAGTAAAAAAAGCGAA
AGAGGCTTTAGTTATTTAGCTGTACTTTGAGGGAAACCAAGATGCTTGGGAGAAAGGTTGAGGGT
TCAGAGTACCTGATAACCCCGCTAGGACTGGCAAGGGAAGGAGCACCGGGCCTACCTTTACTCGA
GATCTCCTGTGTAATAGCGGGACACTTCGACGGCAAAGAAGCAAG
Right flanking sequence: Indices 292163 -- 292662
ATACTTCTCAGCACTTTACCTATTGCTTCGCTCTAGTGACAACGTACCTTTGGTGGATAAACTTC
TACGAAAAAAGGCTAGAATAGGTAAGATAGTTGGAAAGCCAGAGGCTAGTGAAGGGCTTGACTAA
GGATTTCTTACCCTGTCTCTGCAAAGGCTTGTTAGAACTCTCATCACCCATATGGGGCAAAGGGT
GTCTACCTCAAGTACGGTTTACAACCCTGTGTCGCTTTCGGGTACAGGTTCCCTTTGTTGAAGGC
CGTTCGAGCTTTTCCTGGGAGTATGGCATGGGTTACTTCAGCGCCTGGTACTCGAACATTGGCTC
GAGGTATGAGTTGATAGAAAAAAGCTAAATGCTCTTAAGATCGTCTCTCTGTCTGCATTGTTGTG
GTACCTAGGCTTTCTGACAGATCTGAGCGTGCTATTACGCATTCAATCTTCTTGACATAAGTACT
AGGTTATCAAAGTGCAGGGAACGTATCCGGCATAGCTACAGGGGA
Found at i:296958 original size:18 final size:18
Alignment explanation
Indices: 296937--296971 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
296927 TTCTTATCTG
*
296937 TCTTAACCACCTTGGTTT
1 TCTTAACAACCTTGGTTT
296955 TCTTAACAACCTTGGTT
1 TCTTAACAACCTTGGTT
296972 GTTTCCTTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.20, C:0.26, G:0.11, T:0.43
Consensus pattern (18 bp):
TCTTAACAACCTTGGTTT
Left flanking sequence: Indices 296437 -- 296936
TAAATGCCTATATTGCTTTATAATGTTATTGTTATGTTGATGTTATATTAAAGAATGAAATCTAA
AAAAGTTGCTTAGTCCCATTCTTTATAATTGTCTTTCTCATACTGTGTAAACGAACTTCAAGTCT
GAATTGTGTACTGTACTCAACAGGAAGCGTCACAGCCCATCCCGATGTCATTCTCCATTCCAATT
GAAATAGCACAGAATCTAGCTCTCGCTATCGTGCCTCAGAAGCTCTAACTATGCCTTCATCCGCC
CCTCCGAAAGAACTCCAACTATTGGTTTATGCGCTCCAGTAAGCGATTTCGTCTCAAGTGCAGCT
TTTACGTTACGACTATACTTCGTTGCTGTGCTGCTCTCTGGGTTGTGAAAGAAGTGCAGTTTTTA
CGTTAGAGGGGGATCTCTCTGGTATACTTTTTACGGAGGTTTCGTCTTGTCAGTCTGGTTTTTCC
TCTCTGTTTTCTTAACAACCTTGGTTTTCTTGGTTTTCTTATCTG
Right flanking sequence: Indices 296972 -- 297471
GTTTCCTTAGTGAATTTCTTCATCTCATCTTGAAGATGATCTATCTTACTTTTCATCTCGGAGAT
CTCTCTATCCTTCTCTGAAATGATGCCGATCATCTCTCTATCCCTTTGAGAGAGTTTTTCACTGA
GAATCTCACTCTTAGTCTGAAGGCGATTCATTTCATTCCTTAGATAGAATACAATTTTTTCGCCA
CTGCGGGGGTTTATGTTAGACAGATCTTCTACATGTATAGGTTTAGTATCAATCCATTTATTATT
ACTATATACAGGTATCCTCTTTGTACCTCAAGTTCTATATAGAACAGATTTCTTTACAACTGTTC
AGGATTATATGAAAAAAGACCCTATCAATGTATGGGTTTATGATCGAATTCACAAGAAGAGGCGT
CAGGTTACTCTTAGAGTCCCTTCGGAAACTAGAGATAAAAGGAAGACTCAAGTATCTACCTTCGT
CAATTTCATTCACCAAAAGGATGCATATATTGCTATGAATGTTAT
Found at i:297997 original size:21 final size:21
Alignment explanation
Indices: 297973--298018 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
297963 TGTATTTCCG
*
297973 GAATCATTTGAGTCATTCATC
1 GAATCATTTGAGTAATTCATC
297994 GAATCATTTGAGTAATTCATC
1 GAATCATTTGAGTAATTCATC
298015 GAAT
1 GAAT
298019 TATAGTGTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (21 bp):
GAATCATTTGAGTAATTCATC
Left flanking sequence: Indices 297473 -- 297972
TTGGAAATGCTTAACCAGGGATCCCCCATATACACAGTTCATGACAACTTTATAACTACAGCTGA
TCATAGCAAGAAACTGCCTGATACTTATGTCAATATATTTTGTAAAATGGATCCTCTTTCTATCA
TCAATGAGTATATCTATCACAATGTGATTGATTATCAAGAAAAATGATTAGATGGTGGTGAATTT
GTTTACGATGAAAAAGGTATTGATACAGAAAACTGGAAAGGTATAATCAAGCAGGAGGATCTGAA
AAAATACTTGTATAAAAATATACCAGAAAAACAAAAAAAGAAGAAAAAGGATAGGGATACGTGGG
AACAAAAGATTCAAACCATAATGACTTCTTACGAGAACTATGTTAATTTCTTATGCGAACCTTTT
GATAAGAGTTTAGGAAAAAATGAAAAAAAAAGATGTTTTTCGAAGGTAATTAGTAAACTTGATCG
TGATACTAAGTATCAATATTATAGGGAGAAATTGATGTATTTCCG
Right flanking sequence: Indices 298019 -- 298518
TATAGTGTTCATTATTAAAGAAAAAAAGATGTGGACTGGACCCACTTACTTTTCTTTGTATTTCC
TGCTGAAACCAACCTAAGAGAAAGAGACCCAGGTGATATGGATTCGCTAGGACGGAGTTGCTGTC
GATTGAGGATTGGCCGAGGGGAGTGCCATCATGTAGCTGGGTACAAATAAGCCAGTGAAAGAGGA
GTAGTCAGGGTACGACGAAGCACGCCTGGTACGTAAGCGAATACGGATCACGTGGGTTTGTACTG
ATCCGCTTTCGAGCTGTCGAGTGACGATTGCTCCATCTATTAAGAAAGGACGCGGGGGGCCTGTC
TTATAATAAAGGGGGTACTCTCTTCTCTGATGTGCGCTATATTATTGTGTCCTATTCCTGAAGGA
GTGATCCGGGATTAAGCCACGTGGCGATACCCGCCAAAAGAAAGGGGGCCTTTCGTACGGATTGG
AGTACGAAGAGAATTCTTCAGCACACTAAAATCTAGTGGATCCGG
Done.