Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_043889
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 174448
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Found at i:13675 original size:54 final size:54
Alignment explanation
Indices: 13600--13729 Score: 215
Period size: 54 Copynumber: 2.4 Consensus size: 54
13590 GATTATATGA
* *
13600 ACGAAACTTAAGTTTCCGTATATGCGTATGCTATTCCCAATTATTCATATATAC
1 ACGAAACTTAAGTTTCTGTATATGCATATGCTATTCCCAATTATTCATATATAC
* *
13654 ATGAAACTTAAGTTTCTGTATATGTATATGCTATTCCCAATTATTCATATATAC
1 ACGAAACTTAAGTTTCTGTATATGCATATGCTATTCCCAATTATTCATATATAC
13708 ACGAAACTTAAGTTTCGTGTAT
1 ACGAAACTTAAGTTTC-TGTAT
13730 TCTATATGAT
Statistics
Matches: 70, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
54 65 0.93
55 5 0.07
ACGTcount: A:0.32, C:0.17, G:0.12, T:0.39
Consensus pattern (54 bp):
ACGAAACTTAAGTTTCTGTATATGCATATGCTATTCCCAATTATTCATATATAC
Left flanking sequence: Indices 13100 -- 13599
ATTGAGTCCTCTACAAAATAATATAACACTTAAAGCCGGCAGCACGGCATTCGCGGCTGCTGGAT
GATCGCCGATGTGAGCTGTCACATAACCCCGCCCGCCGATCTACAAAGAGTGTCTTACGAATTGC
TTGGTCGTTGAAAACCTCGAAAGAACCGCAAAGGCTATAATTAAGCCTAGAACGTACCAACCGCG
AATTGCGCAGACTATCCATGAATAAATGAAAGGCTCAGAACAATTCAGTACGCGCTGTCGTTCCG
CGTACGGAAAGAAAAACATAAACGTATACAATACGTGGCCTCACGACTGGGCACTCCAAAGAAAG
AGATGACTTTCAAACATAATTTGGGGTTGGGAATAATAACGTGTAATAAACGCGGATTAGCGCAT
AAAAGCAAGCCTCTGACTGCTGCGACTGGATGGTAGCTTCAGCGGCTTCTTCCCAGAAATCATTT
CGACTTACATCTCGACAATGAATGTGAAAAGCGGCGATTATATGA
Right flanking sequence: Indices 13730 -- 14229
TCTATATGATATAACAAGCCGTATATGCTATGCGTTATGCCGCACTCCGCGCCACGCCCCGGGCC
CGTCCCGGGCTTCTGGGAACCAATAACACGTAAACCGTGTGAAACTAGAGCGAATCGATCTCCGT
GAAGCACGAATTCGAACTTCCTCCGGAATAGTTTTTGATACAAAATTCGTTATATTTCGTGGTGT
GTTAAACCTGATCAAGACCGATGAAACGCGAAGCGAAAAAAAAGAGATATATCCTTTGTTCGTTT
TATTCCATTCGACCTTTTATTCCTCAGCCTTCATTCGCAATGCGAATCAAGCGGGAGAGAAGAAA
GAAGCACGCTTCTTTCTTCTCCGGAGTTCACTCCTTTCTTGCGAAGTAATGTACTGCATTCTTAG
CTCAGTTGGATAGAGCAACAACCTTCTAAGTTGAAGGTCGCAGGTTCAACTCCTGTAGAATGCGT
AGAGTGCGCACGCAGTGGGTAATATATACCAACGGCCCGGAGGGC
Found at i:38098 original size:20 final size:20
Alignment explanation
Indices: 38073--38110 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
38063 CAGTCCTCCG
*
38073 GGGCCCTGTAAGACAGTCGC
1 GGGCCCTGGAAGACAGTCGC
*
38093 GGGCCCTGGCAGACAGTC
1 GGGCCCTGGAAGACAGTC
38111 CCCCTACCCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.32, G:0.37, T:0.13
Consensus pattern (20 bp):
GGGCCCTGGAAGACAGTCGC
Left flanking sequence: Indices 37573 -- 38072
CCTAAAGCAATAGATATTTTTCGCGATGGGCAATAAACACCATCGAAAAAAAAACCACTCGTTGT
GTGCTTTTTAGTAGTTGATTACTGGGCACATTGGGGTAATTAGCTCAGTTGGTAGAGTGCCTCGT
TTACACCGAGAGAGTCAGCGGTTCAAGTCCGTTATTACCCAAGAGTTTTTCATTATATGTAATTA
CGAATTTAATCCAGCGTCTGAGTAAATCGACCAATTCGATTGATGGTGGTTACGAAAATATGAAA
AATGGTTTGAACTGCAATGTTTTTAACCACTCCTGTCTCGTCTTCGTAAGGCTCGCCTCTACCAC
AGCTGCATGTCCCGGGACATCCGGAGACGGATTGCCCACCACCCGCATTTCATCGAGATAGGTTC
TTAAAAAACGTTCCATCTCCAACCAATTCGTGGAAACTACAAATGCGGTAGCACTAATCTCTTCC
ATTTCCCCCGTAAGTTTATTCCTTTTTTCGTCCGACAGTCCTCCG
Right flanking sequence: Indices 38111 -- 38610
CCCCTACCCGGGGCCCTGTCAGACAGTCTCCGGTCCCCCGCCCCCGAAACTCCACCACACACTAT
ACAATCTTTCCGGGATGTACCATTGCATGTATCGCACCCGAAATCATCAATAAAAAAAAAAGACA
ATGTCTTTTTCTTGTAATGAATCATCCACGACGCTTCATTACTTTCGGGGAAATAGCTTAGTGGT
TTATAGCGCTGGTCTGTCAAGCCAGAAGTCGCGGGTTCAAATCCCGTTTTTCCCGGTGAAACTTG
AATCCAACTACGAAAAGCAGTTCATCGAGATATCTATATTTTTTTCCCAGAGAGACGAAACCAGC
TGGGATGAGCTGCTTTTCTTTGAGCCTCGGCATACTAGCGGAGCTCTTACAACCCGCATCCTCCA
CGCATATGCCGAAGCCAAGGTAAGCCAAAATATTTCGTTCGTTTTTTTATCCGGAGGTATGGCTG
AGTGGTTGAAAGCATTGGTTTGCTAAATCAGTGCGACGAGAAACT
Found at i:41604 original size:24 final size:24
Alignment explanation
Indices: 41569--41623 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
41559 GTGCTGCAAC
*
41569 AGTCTG-AACTCCAAGTACCTCAG
1 AGTCTGCAACTCCAAGTACATCAG
*
41592 AGTCTGCAACTCCAAGTATATCAG
1 AGTCTGCAACTCCAAGTACATCAG
*
41616 GGTCTGCA
1 AGTCTGCA
41624 CGGGATAGCC
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
23 6 0.21
24 22 0.79
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (24 bp):
AGTCTGCAACTCCAAGTACATCAG
Left flanking sequence: Indices 41069 -- 41568
ACCGTAGTACAAATCCAATTGGGGCCGAACTAATTGAGGAAACCGGGAGGGATCTTACCTTTAGA
GGAGCTTGGATCGTTGCAACCACACTCGTAGTTGGGGCTTTTCATCCTATAAACAGGAATTTTGA
CCTAATCAAAGCGAAGGCCCAGGCCGATAGCCATCGAAAACGTGTGGAACAGGTGCTAGCTGGCC
TAGCGGCAGACCGCGCTCTTAGCGCGGATAGAGTGCGTTACGCTCGAGAGGGTATAACCATGCAT
GACTAGCGCGGTGTTGGATCGCCTTCTTCAACAGCAGAATCGTAGTTGGTGGGTTTCTGCATAAA
TCCGGGCGGAGATAGCTACTGTCAGGCGGTGTACAGAAACAGCTAGAAATTACTATAAGGCTGCA
TCACTCGTCCGGCGTCGTTGTTTTGATCGAACTACTAGATACTTTAGCCGAGCGAGTCGACCATC
ATCGAGAAGCCAATGGCGATATAGATTGGCCGCTGGTGCTGCAAC
Right flanking sequence: Indices 41624 -- 42123
CGGGATAGCCCGGATACCACGGATAGCGATTACTGGAATAATGTACTCGGCGGGTTATTTGCCTT
TTCACGTTTATAAATCGGATCTTTATCCAGAATCTCTTGATCTCTTAATAGTGAAAATTAACCCG
AGTCCTTCATTCTATCTCAAGACTTATCGAGGTAATCCCTTACCGTTTCCGTGCATGAAACTTAG
GAGCACGTTTATCTGCCATTACGATCGCTTCTACGTGATTTGTCCGGTTGCGCCAAAGGGCAAAA
TTCGAAAAAGGTTTGGAAATGAACGGATCGCAGGGACTATCTACTTGATGGTTAGGCACATGAGT
CCTATTTCCTCCTTGATGGAGGTGGTTTAGTTACACCGTATAACTGAACCAAATGGTCGTGAGCT
ACCACTATGATGAGTAGCTGTGCCGTGTGTAGTGACGCACACACGGCATTGCTGCGTCGTCACAA
ACATATATATATATGTGTGTGATGACACATTGAAGGTAAGCAACT
Found at i:43466 original size:33 final size:32
Alignment explanation
Indices: 43408--43489 Score: 92
Period size: 33 Copynumber: 2.5 Consensus size: 32
43398 AGATATTTAT
* *
43408 ATATCGGCGATGACGAATTCAAAGGATCTAGAG
1 ATATCGGTGATGAC-AATTCAAAGGATATAGAG
* * *
43441 ATGTCGGTGATGACAATTCCGAAGGATATTGAG
1 ATATCGGTGATGACAATT-CAAAGGATATAGAG
*
43474 ATATCAGTGATGACAA
1 ATATCGGTGATGACAA
43490 CGTTCCAGGA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
32 4 0.10
33 37 0.90
ACGTcount: A:0.35, C:0.13, G:0.27, T:0.24
Consensus pattern (32 bp):
ATATCGGTGATGACAATTCAAAGGATATAGAG
Left flanking sequence: Indices 42908 -- 43407
ATAGGTATATACCCGACCAGTTCCCGCACTGGAAACCCACACAAAGGCTTGTAGGTAGTTCGGTT
TTGATACTGTTCGAGTCAAATGTAATGTACCCATCATCGGGTTGGGAACTGATAAAATAGTAGTT
ACGAAATCTTAGGGAATCAGTGAAGGACACAGAATATACAGTAGCAGGCAAAGTTGGCAATTGAT
ACGGAATGTGTTTATTATTCATAGGTCCGTTTAACCAGTTCGATTCTTCTCGCCGGCTTATTATT
CGTACCATTAGGCAGGGGTCCTGGGCGGCAGCCACCCGGGTGGCACGACCTTAGGCCTTTACAAC
CGGTCCCGCATTTACGGGTTGTGGGGAGATTAATGAAGTCACGATATCAGCCCTAGATTTCAATG
CCATCACTCACATACCAATCGGATGGGAGTGATGACGATTTCCCAGTAAATTAGAAGTCATAACT
CAAATCCCCAAGGATTTGAGTTATGACGAGGTTCCAGATATTTAT
Right flanking sequence: Indices 43490 -- 43989
CGTTCCAGGAAATAAATATATCAATTATGACTTCGGGATTATATTTCCATAACCCCACATGTGAG
GTTATGACCGCGTTCCGGGATAGAAATGTATCAGTTCTGATCATTTCGATGATATTCGTCATGAC
CCACATCCCAAAGGATGTGAGTTATGACAACGTTCCTTGATATTTCTATTTCGGTTACGACAATT
CACCCGGAGAATTGGAAGGATAGGTAATTACTATATATTGGGGATACCGTACACCACTATTATTA
GTATAAATAAAGGTTATACCCTGCTATATTCGAAAATTGGGAATATCACTCAACACACATTTAGG
TTCTACTCCTCACATATCATATATTCAGTTCTATATCACGGTTCAGCGGTTTAATCTAACGCACA
GGGCACTTCAACGTACCTAGCATAATATATAATACATAACTAATCTATATATGATGCTTCATTTA
TCACTTCCGGTCCTAACAGTGTGAAATTGAATGGTTCTTGGTCTC
Found at i:106698 original size:27 final size:27
Alignment explanation
Indices: 106657--106740 Score: 150
Period size: 27 Copynumber: 3.1 Consensus size: 27
106647 CGAGACTATA
*
106657 GGGAGAGGCGATACGTGCTCGACCCGC
1 GGGAGAGGCGATACGTGCTCGACCCAC
*
106684 GGGAGAGGCGGTACGTGCTCGACCCAC
1 GGGAGAGGCGATACGTGCTCGACCCAC
106711 GGGAGAGGCGATACGTGCTCGACCCAC
1 GGGAGAGGCGATACGTGCTCGACCCAC
106738 GGG
1 GGG
106741 CCCGCGCGAA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 54 1.00
ACGTcount: A:0.19, C:0.29, G:0.42, T:0.11
Consensus pattern (27 bp):
GGGAGAGGCGATACGTGCTCGACCCAC
Left flanking sequence: Indices 106157 -- 106656
AGGCACAGCAGCTAGGATTTTTGCCAAGGGTGGCAGGGACCTATCAAAACCAATTAAGGCTAAGA
AGGGCCGTAGGCCTTTGCTGAACGGGGTCTTGGAGTCCAAGACTATTGCACATCGAAGGAGGGGG
GCGGGGAGTGAAGGCCACTTCCCCGCCATTCCCTACACGCGACATGGTCAGATAAAGCTACCCGA
CACGAAACCGCTAACCAGGAACTGGCAACCAGGCCAAGCCCGCTTGAATTGCATTGCGAAAATAA
ATCGGTGCTGTCATAGAGAGGGAAACGACGCTTAGAGGCATACGATTGTTCGGTACGGTACCGCA
GGTAACCCTGAGTCGGAGAGGATGGGTAAGCGGGGAGCACTTGATGATATCGTGAGAGTGCACGG
GGAAATAATTGAACTCTTTATTTGATTTATTCCGTTGTCCGAGCGAAAGGAATCTTTTGGGCCGA
AGGTGCGAAGCTCTCGACCAACGGCCCAAAGGCCACGAGACTATA
Right flanking sequence: Indices 106741 -- 107240
CCCGCGCGAATACCGGTGTCCCCTCGGACCGAGACCGTGGGGGCAAGCCCGAACGCTTTAAGAAC
CAACCTATGGCTGGCCCAAAGGACCGAGAAGGCCTTGAATGGCCAGCCAATTTCCGCTTCGCCGG
CCGGGGAAGAAGCACCACATGCCTTCTTTCGTGAAGCGCTCCAATCGTCAAATGCTCTCCTCTGG
TCGAGTGCTACGCACCCTTCCCCACGGTATCTGCATTACGTGCCGCCCATGGGTGGGTCCGGAGG
TGCGTAAGCACTTTCGGACAGGACGACTTTACAGGGTTCGTTCGAACGAGACTTCCTTGGCTTTA
CGAAAGAAGCGCGGGCCCGCCCGGACTCTCGCTTCCGGCCTCCGCGCTGCCTTCGTCTAGTGAAA
GCCAGTGGAAGGGGAGGCCGGCGCTGCTTCTCACCCATCAGGTTGAGGGCGTTTCGGAATTGAGA
TATATCGATTAGAGAGAGATGTATATATATATATGAATGGGGAGA
Found at i:113863 original size:8 final size:8
Alignment explanation
Indices: 113850--113892 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
113840 GATAGGTTAT
113850 AGGCCCGG
1 AGGCCCGG
**
113858 AGGCCCAT
1 AGGCCCGG
113866 AGGCCCGG
1 AGGCCCGG
**
113874 AGGCCCAT
1 AGGCCCGG
113882 AGGCCCGG
1 AGGCCCGG
113890 AGG
1 AGG
113893 GCATAAAGGG
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
8 27 1.00
ACGTcount: A:0.19, C:0.35, G:0.42, T:0.05
Consensus pattern (8 bp):
AGGCCCGG
Left flanking sequence: Indices 113350 -- 113849
TACTCCCCATAAAGCGCAAAGGCCGTAGGGCCCGAAGGGTCCAAAGGAGACTTCTCTCTTTGGCT
TTCCAGAAACCGAAGGGCCGCCCGTGGTTCGGGGAAAGCCAGCCCGTGAATCGTAAATTTCCGGA
ACGTCTGCCCTTTCTTTGTCTGACAGTGCCCCGCCCTCCGGCCTTTTTTTCTGGGTTTGGTTCCC
GGCGGATTGTCCATTTCAGTAGATTTTAGATCTACGTCATACTTGGGATTATTACTGAAGCCCGG
GTAAGGCCGTGGGCCGCGGCTAAAGCCCGGAGAACGTAAAGCCAGAAACTGATAAATTCCCTGAC
AGTGTCCCGCCCTACACGCGAAACGTTACGGCCTCCGCAAATCATCAAGCCGTTTCCGCCCGTAG
GTACGAAGGACCGAAAGCCAGAAATGGCTTGACAATTTGATTTGGCCAGCGCTACGCGCGTAGCG
CATAAACTGTTAAGTTTCTGGTCGATCCGCGAGTCGATAGGTTAT
Right flanking sequence: Indices 113893 -- 114392
GCATAAAGGGCTTTACTATTTACGGGTTTACGTCCTCTGGGCGCCGGAGCGAAAACAAATATATT
TTTTTTTATTGCTTTCTTTTCATCCCGCCGATCCTTATCCGCTTGCGAATGAAGCGAAAGGCCTC
TAGTACTCAAGTCTTTAGGAATTTCCCGCATACAGCCGAATTTAGCCATGACACTTCCGCACAGG
CTAAAGCCCCTTATTGTGTTTATGAAAAGCTGATACGAATTCATGAAATCGTAACAACTTATCCC
CGCCCAAACTAATAATGTCGTTACAATTAAAGAAGTCTATAACTCTTGCTAAAGAATTACGATTA
TAGGTCTCTATCAAAAGAAGCGGTTCCCCACCTTTAACAGCAATTAATCCAACTTGATTGGGTGG
ACCGGATCTGGTTCTTATACCCTCCGTAATATAATGATCGGACGCTTGAGATATACTAAATGAGT
GTGAACCATTCGATCTGATACAGGAACAACCTTCAGCAGTTGTAG
Found at i:113869 original size:16 final size:16
Alignment explanation
Indices: 113848--113892 Score: 90
Period size: 16 Copynumber: 2.8 Consensus size: 16
113838 TCGATAGGTT
113848 ATAGGCCCGGAGGCCC
1 ATAGGCCCGGAGGCCC
113864 ATAGGCCCGGAGGCCC
1 ATAGGCCCGGAGGCCC
113880 ATAGGCCCGGAGG
1 ATAGGCCCGGAGG
113893 GCATAAAGGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.20, C:0.33, G:0.40, T:0.07
Consensus pattern (16 bp):
ATAGGCCCGGAGGCCC
Left flanking sequence: Indices 113348 -- 113847
CCTACTCCCCATAAAGCGCAAAGGCCGTAGGGCCCGAAGGGTCCAAAGGAGACTTCTCTCTTTGG
CTTTCCAGAAACCGAAGGGCCGCCCGTGGTTCGGGGAAAGCCAGCCCGTGAATCGTAAATTTCCG
GAACGTCTGCCCTTTCTTTGTCTGACAGTGCCCCGCCCTCCGGCCTTTTTTTCTGGGTTTGGTTC
CCGGCGGATTGTCCATTTCAGTAGATTTTAGATCTACGTCATACTTGGGATTATTACTGAAGCCC
GGGTAAGGCCGTGGGCCGCGGCTAAAGCCCGGAGAACGTAAAGCCAGAAACTGATAAATTCCCTG
ACAGTGTCCCGCCCTACACGCGAAACGTTACGGCCTCCGCAAATCATCAAGCCGTTTCCGCCCGT
AGGTACGAAGGACCGAAAGCCAGAAATGGCTTGACAATTTGATTTGGCCAGCGCTACGCGCGTAG
CGCATAAACTGTTAAGTTTCTGGTCGATCCGCGAGTCGATAGGTT
Right flanking sequence: Indices 113893 -- 114392
GCATAAAGGGCTTTACTATTTACGGGTTTACGTCCTCTGGGCGCCGGAGCGAAAACAAATATATT
TTTTTTTATTGCTTTCTTTTCATCCCGCCGATCCTTATCCGCTTGCGAATGAAGCGAAAGGCCTC
TAGTACTCAAGTCTTTAGGAATTTCCCGCATACAGCCGAATTTAGCCATGACACTTCCGCACAGG
CTAAAGCCCCTTATTGTGTTTATGAAAAGCTGATACGAATTCATGAAATCGTAACAACTTATCCC
CGCCCAAACTAATAATGTCGTTACAATTAAAGAAGTCTATAACTCTTGCTAAAGAATTACGATTA
TAGGTCTCTATCAAAAGAAGCGGTTCCCCACCTTTAACAGCAATTAATCCAACTTGATTGGGTGG
ACCGGATCTGGTTCTTATACCCTCCGTAATATAATGATCGGACGCTTGAGATATACTAAATGAGT
GTGAACCATTCGATCTGATACAGGAACAACCTTCAGCAGTTGTAG
Found at i:141448 original size:30 final size:30
Alignment explanation
Indices: 141414--141471 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
141404 GACCAGCCCG
* *
141414 CTCCATGACCGAATTGGACGACTTGCCCAA
1 CTCCATAACCGAATTGGACGACTCGCCCAA
* *
141444 CTCCATAACCGAGTTGGATGACTCGCCC
1 CTCCATAACCGAATTGGACGACTCGCCC
141472 GACTTGCCAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.24, C:0.34, G:0.21, T:0.21
Consensus pattern (30 bp):
CTCCATAACCGAATTGGACGACTCGCCCAA
Left flanking sequence: Indices 140914 -- 141413
GATCCCGCTGTTCTACCCCACTAAACTATTCCGACATGCTGATCATGATTCCGCTGCTGTTGGAA
GAATCTACCGCTTCCTAGTTGTTAGGCCATAATCCGCCGCTTCACGCCCCGCGCTTTTCCCTATC
TGGGCTATGGTCGCATAGCCCGACGAGGAAGCGGCCATCGCGAAGGCTGCGATACAAGTCCTTGT
AGGGATCGCCGCCCGTCCCCCCGGCCTCCGGCGGCTATTTTAGCCGGCGGGCCTCTCCGCCGGTC
GGACACTCCGGGCCTCTCCCGGGGAATCGTCGAGAGCTAGGTTTTAAAAAAAAAGATATCGGATC
GAAGACGCGTTGTTCGACCATAAAACGCAGAGCGGGAACACTCGACCATAGGGAAAGGGAGCCGA
AGCCCACTTGGAATCCGAAGCAGCAAAGGTGCGTAAGCACTGTCAGGGGGGGGACGGCTCGACAA
GAGAAATAAGGGGGTTGGGGCGGAGCCCTCCAAAGGACCAGCCCG
Right flanking sequence: Indices 141472 -- 141971
GACTTGCCAACTTCAGGGCCGAAGGAGCAGCTATACCGAGGTGTACACCGGAGACATCTTCATTG
CCCATCGCGAATTCTTATTCAATTCGTCGGGCGGGTAAAGCGGTGCCCCGTCCCGGGCCTATCCG
CACTCTGCACCGACTCACCGGGTTTGTGTCGGCGGGGGCGCTGATAAAAGGACTGCCGTCTCGCT
CCTCGTTTGACGCAACCGACTGAGCCGCTTAGCCAGCGAAGCCCTTCCGCAAGACTTAAAATCGA
GGGCTGGGGTTCCGTCCGGAAGAGACTAGACTTTATATCTCCGCCCGCCTAGAGAAGGAAGAGAT
TCAAAAGATTGAGGGATGAGAGAGAGGCCCAATAACCCCTGGGTAAATAGCGCAATACATTTTCG
TTCTTTTCTTCTATCGTTCTACGTAACATCATGGCAACGAACAACGGGGAAACGGTAGCTTTTGA
ATGAACCACTGAAAAAAGGATAGCGAGAAAGTCAGGACCTAACAA
Found at i:161028 original size:21 final size:21
Alignment explanation
Indices: 161004--161050 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
160994 GTCCGGAGGG
*
161004 CCGGATTTCGTATATGGAGAT
1 CCGGATTTCGTACATGGAGAT
*
161025 CCGGATTTTGTACATGGAGAT
1 CCGGATTTCGTACATGGAGAT
*
161046 TCGGA
1 CCGGA
161051 AGAGAAAGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.23, C:0.15, G:0.30, T:0.32
Consensus pattern (21 bp):
CCGGATTTCGTACATGGAGAT
Left flanking sequence: Indices 160504 -- 161003
AACCGGCCAAGAACCGGCGGCAAAACAATATATGTGTATATCCATTTTTGAGCGATAAATAGAGA
AATACGAGTAATAAAAGGAAGGCCCTTCGGGCCCTGCCGTGACGGTTTAGACGGTGAATGGGGGG
AGGTTCGTCTATTTATTTACCACAGAAACAACCCGATATAAAAAAGATAGAAGGTGCAGTGCTAC
GCACCTTATTGACCGTCTGAAGAATCGATAAGTATAATAACATAGGGCTTTGTTCTATATCCCTA
TGGTCAACCAAAAAGATCTTTGGAAGTTCAGGGCTATGGAATAAAAAGCTGTTATTTCCTCAACC
ACCACACGTCGATACGAACCAATGACCATATATCACACGGAGAAGCACAAGGAACGAATAGGTAA
TCGCTCGATTGCGGACGGAGGGAGCTCACGTTTTAGTCGATTGTGGTCTCCGGGAGAAGTACTCT
GACTAGGGAAGGGAGGTCTATATCTATCTACCAAGGTCCGGAGGG
Right flanking sequence: Indices 161051 -- 161550
AGAGAAAGAACATCCGGGGTTATCCCTCCGGTATCCGCGCCCCTTGGGCCCGGAAACTTCTATCT
GCCCCTTGCTCGTCAGTTTTGTGTCAGTCTCTTGTTCCTCCCCCGTCCGACAGTCCCCCCGGGGC
CCCGTTTTTTCCGTTTTTGTTTCCCCTCCCTGTCCGACAGTCGCGGGCCCTTCATTTTGTCGGAC
AGTCTTTTTTTTTGTGGTGTCCAAAAAGTCCGGGGCCCTGTCTGACGAAAACAAGTGCTTACGCA
CCTCCGGACCCATAGGCGCTGCGCGAGGAGGGAAATAAAAGATAAAAATCTTTTTTCGTTATTCC
ATGTTTGTTCCGGGTCGAAGACGCTCGAACCTCTCCTTAGAATCTTCGTACGCGGAAATCGTCAA
GCCATTTCCGGCCTTCTCGGCCCCTTCGGCCCAAGGGTTCGGGCCGAAGGCCTCAGGAATAACCA
CGCTTTTTCTTGTTTCAAGCCGGGGCGCTGCATATATATACAATT
Done.