Specifications
==============

Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt10/NC_035075.1/NC_035075/Repetitive_sequence/123.misa.ini"

Definement of microsatellites (unit size / minimum number of repeats):
(1/10) (2/6) (3/5) (4/5) (5/5) (6/5) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           644311
Total number of identified SSRs:                 119
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    6


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	94
2	20
3	5

Frequency of identified SSR motifs
----------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	16	17	total
A	-	-	-	-	-	22	13	4	2	2	2	1		46
G	-	-	-	-	-	3								3
T	-	-	-	-	-	20	8	6	4	1	3	1	2	45
AT	-	3	2		1									6
CT	-	2	1											3
GA	-	1												1
TA	-	6	3		1									10
AAG	1													1
AAT	1													1
CTT	1	1												2
TTA	1													1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	16	17	total
A/T	-	-	-	-	-	42	21	10	6	3	5	2	2	91
C/G	-	-	-	-	-	3								3
AG/CT	-	3	1											4
AT/AT	-	9	5		2									16
AAG/CTT	2	1												3
AAT/ATT	2													2