Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_058235
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 594121
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Found at i:85777 original size:13 final size:13
Alignment explanation
Indices: 85759--85783 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
85749 TCTTTGTTTA
85759 TATATATATTATT
1 TATATATATTATT
85772 TATATATATTAT
1 TATATATATTAT
85784 AATAATCTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
TATATATATTATT
Left flanking sequence: Indices 85259 -- 85758
GATGAACCACGCCTTCGCTATCGCAAGAATATAGCGATCGAAGAGCTATCGCTCAGCAGCTTCGC
GTATTACGAAAGCCGTATTGCCCGAAGGGGGCATGCTGCAAGAGCGTAGGTGAGTGGTAAGCGTA
GGAGGCGTGCCCGAAGGGCAGCGGCAGCAGTGTGTGATTCTTTAGATTCTTTAACTGAGAAGGGC
TTTAAGTCACCAACGACTTTCTTCTGATCACCATCTGCTATTTGAAGCACTGATGAAGAGTGGAG
GGGACTTCGACTGCCTTCTTGTATCGGGTGAAGAGAAGGGGGTGGTAGGCTTAGTAGGGCTCGAA
CCTACAATATTACCGTTATGAGCGGTACGTTTCAACCAATTAAACTATAAGCCCCTACGGATCTC
TACATGCAATTCGCTCACTTCGGGAAGAAGAGGAGGCCCTTGCTCTATCTGCTTCTTCCTCTTCC
CAGGAATGAACAATTGGATAAAAAAAGGATTTTCTTCTTTGTTTA
Right flanking sequence: Indices 85784 -- 86283
AATAATCTAATTAAGATTAAGCAAGCGGCCCTTTCGTGACTCAAACTGCCGGTACGCTTTCCGGC
TCGCAACGACTCAAACGGGCGGGGGCTATCTATTTGCTTGCAATGCAGGCTGTTCGCCTTTCGGA
AAGGGTTCGCCTATTTGATTCAAAAGGCGCTACTAAACTACTCTAGTACAGCTAGTGTTAGTAGT
ACAACAGAATGCCGTTCACCCCGCAAGCCCTTCGTATGCAAGCCCTACTGAAGTACCAAAGGCGA
ACGGCATTAGTACAGCTGTTAAGAATACTCTCCGATGTTGACTTTGTAAACTAATAGGCCTTGGT
AACCGGTAGGTTACTTTTTAATCAAAGTAGCGACGAAAGGGGGAAATAGCTCAGTCGGTTAGAGT
GCTGGTCTGTCACGCCAGAAGTCGCGGGTTCGAACTCTATACAAAGGGCCTTTCCTTTCAAATGA
CAACTGCCTCTTCCTGCTGCGAGGGCCTTGAAACCAAACCGCCCC
Found at i:141895 original size:24 final size:24
Alignment explanation
Indices: 141853--141901 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
141843 ATTCGGATTC
* *
141853 GTTACTTGGGGCTGATGAGGATGA
1 GTTACTTCGGGCTCATGAGGATGA
* *
141877 GTTACTTCGGGCTCCTGAGGGTGA
1 GTTACTTCGGGCTCATGAGGATGA
141901 G
1 G
141902 GAATTATTCC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.16, C:0.14, G:0.41, T:0.29
Consensus pattern (24 bp):
GTTACTTCGGGCTCATGAGGATGA
Left flanking sequence: Indices 141353 -- 141852
GACCAAGGGGAGAGGGGTTTTAGGCCTTATTTGTTAGAGCTTGTTAAAGTGAGGAAGGGGAGCAC
TTTTTTAACCTTACCTTACCAAAGTAAAGGAAAGTATCAAGCTGTCTTTGCTTTGCCAGCGGATT
CCAATTCTGCTGTGCCGGTGCGCAAAGCAAGCACGCTTAGACTGCGATGTGCAATCTTTGGTCTG
CCTATCATTGTCCATTAAGGGCTGACTCCGCTAGGCAAGAGGACCACTACTGGGATTATTTAACT
ACTAACTGATGACCAGGGGACTACTCTGTCTGCTTTTTCCACTACTGATATTGACTGACCTGTTG
AGAAGATAGCTGCAGGAAAAAGAAAAGAAGTAGAGTTAGGTTGTGTTCTAGTGTGTAAGCATCTC
TTTCCTCGGTCGATTCGTCTGCTCATTCAGCCTATGATTCTTATCCAATTGTTTCTTCCGAAAAG
TCTTATGAAACGAATTCATTCGGCTGGAGATAGGCATTCGGATTC
Right flanking sequence: Indices 141902 -- 142401
GAATTATTCCCTGAAGCCGTTGATCCAGAAAGAGAATTACCACCATCAGATGATGACCCCTCAGA
GATAGAAGTAAAAATCCGTTATTTTGACCTTGACCTGCCTCTTCCCCAATGGGCACAAGATGCTA
CAAACTATCATACACGGGCCACTCAAGAGTTCATATCCAATCTGGACTTCTACTTTAGGCAACGG
AATCGTGCAGAGATTCTCTACCGAATCGAACTCAAGCTCCTAGCTAAAGACCACCTGAAAGAGGA
GCGGATCGGAATTTGGCCTGATAATATAGCTTTTCCTTGACGAGCTCATCTCAAAAGTCTAGGAA
GACATACGAAAGGAAGAATGTAGAACTGCAAGAAGTCACTTCCAAGGATACAACTGCTGGGATTG
CGAGACTCCCGGAAAGACATGCAAATACATTCGCGCGACTACAAGAGAGTTCTTTTACTGTGTCA
ACCTGCTTAATGAATGGTTTGTGGCTTTCGTTGACAGTCCCTATG
Found at i:156809 original size:16 final size:14
Alignment explanation
Indices: 156788--156827 Score: 53
Period size: 16 Copynumber: 2.7 Consensus size: 14
156778 TACCATGAAT
156788 CACTGCTTTCTGCAC
1 CACTGCTTTC-GCAC
156803 GCACTGCTTTCGCAC
1 -CACTGCTTTCGCAC
*
156818 CACGGCTTTC
1 CACTGCTTTC
156828 AGCAAAATAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 9 0.39
15 4 0.17
16 10 0.43
ACGTcount: A:0.12, C:0.40, G:0.17, T:0.30
Consensus pattern (14 bp):
CACTGCTTTCGCAC
Left flanking sequence: Indices 156288 -- 156787
CGGCTGTCCTTTCAATCCACTATGCCAGCACACCAAGGGTTGGTTGAAGAACGGTGAATATGCAT
GCTTCCCCCTTCTTTCTATAGCATTGTTGAACCCCAGAGAACCCAACCCTTAACTTAAGGGGTTA
AGGTCAAAAGGGCGTACCGCTAAAACAGTATCCTTACCCAAGGCGACCATCCATACCTCTAAGCC
CGAGACTTTTTCTCCTCGGATCGGAGCGCACCACGGGATGCTTTGTGAACAGCCCCCTCTGCTGG
TCCCGCTGCAGTTATATGAGCTGCCCCCTCTGTTCAATACCGATACCTGTCAGATTCCATAGCTG
ATGAATCTCTTTCTTTTTAAACTCTTTCCCTTGATCGTCACGCAAGACGCTTTTCTGGCACAAAC
CTAGTAGTTAGTTATTTGTCCTGCCGATCTTGGGGGAACTGATGACACTGATGCTCCAAGACCAA
GAGTTTTCACAGCCAAAGCTATTGAAGCAGCTCCCTACCATGAAT
Right flanking sequence: Indices 156828 -- 157327
AGCAAAATAGATAACACAAAGTCCTATCCCAGTTGATCGAGCTGAATCCACCCCCAGCATCTCAA
GTTCTTAGGCGGGCAGGTGCATCAGCCTCTTCTTTCTTTTTTCCGACAGGGCTAGTGTAGCTAGC
CGCACAAGCCTCTGACCTGTACTCCAAAAAGGGAAGGTAAGGGGCTTATCTACGGGTAGATAGAC
TATACCAAGAAGAAGAAAAGAAAGCGCAACTATACTAGGCGAGGGAGGCTACACCCGTAGGAGCC
GACCGATTGTCGCTATAGTAGGTTTGCTATCTTTTTCGAGTGCAGTGAGTAAAGTAGCTAGTTAA
CCTTACCGAGGCTGGCAGCTCCTCCATAGTAACATAGTAACAAAAAAGGCCCCCATAACCACACG
GGAGGGTAGGTCAGATTCAACTGGATGGTCACGCTTCTTCGAGCCTAAATTGGAGGAAAGCTGGT
TCCGTGAGTAGCCTATAAAAACAAGGGCGACTCCCAATGGCTTTT
Found at i:163713 original size:13 final size:13
Alignment explanation
Indices: 163695--163720 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
163685 CAAGGACTCT
163695 TTTAATAAAGAAA
1 TTTAATAAAGAAA
163708 TTTAATAAAGAAA
1 TTTAATAAAGAAA
163721 GTGTACTTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.08, T:0.31
Consensus pattern (13 bp):
TTTAATAAAGAAA
Left flanking sequence: Indices 163195 -- 163694
AACGCGCTCATAGAATATAATTCAAAAAATTAAAAAAAATCCTCGTCCAGTGGCACGTCCTTTAG
CTGCTGCGGTCCGGTACGGGGAAAGAAGTTCGGACATATTCTATATAGGAAGCGCTCCTTGCCTG
AAGAATAGGCGTCTTTCATACCTTTCCTGGGAACGGGCAAGAAAACAGATTGGCCTATGAATGTG
CACCCTCTTTCCTGATACTAGGGACATTTGATTCTTTCTTACCTATATTAAAATCTTACCAACTG
CTCTTATTCCGCTAAAAGAGCAAAGAGAAAAGCCCTCTTATGCCAGAAAATTAAAAAAGTAAAGT
GCTAACTGCAGCTCCCCTTTAGGACGAGGCTCTAGACAACTCATATTGGGTCTTTTAGTTCGCTA
AGAGATTCTTTGTGCGAGGGGGTATTTTATATTGATCTAAAGTCTCAGTTCGAGCATTTAGAATG
TCCAGATGGACTAACGGATTAGCTCTCATTCGTGACAAGGACTCT
Right flanking sequence: Indices 163721 -- 164220
GTGTACTTTCACCTCTGGAATGGCAACATGCGAAAGACATCCACTGGCGTGCTTACGTTCTTTCT
TCGCTTCCCAGCCAATTGGCACCGCACCGTTAGCTCTTAAGTAAAGGGAATACACTCTTTTAAAG
AAGGGATTCGAGTTCATTGTAATCCAATCCTGCCTTTCTTATCCTTTCGCGCTTGCCCTCTATCA
GAAGGTATAGCCTTCCAGGTTGGCTCCCACGTAACCCCTTCATCAAGGGGGATCTGTGAAACCCA
AGGTAGGTACCTCCCCACCAACTGGGGCAGCGTTTCCGCCACCCGGTTGACGGCTTGGACCACCT
TTTCTGGATCCTTCCAAGGCGAGACAATGGAAGCAAAGGTTGAGAAATCCACTCGTTTAGCTAAT
AAGATAATCTTAGATAAATTAAAGAGGGACAACCAAATCTTTACTAGCATATCTGCCTTATCATC
CTTCTTATACATCTGACGACGGATAAAAGAAGGGATAATACGAGG
Found at i:228958 original size:63 final size:63
Alignment explanation
Indices: 228859--228978 Score: 213
Period size: 63 Copynumber: 1.9 Consensus size: 63
228849 CGTTCCCCTT
*
228859 CCTCTCCCGTTGGTCGAGCTCAAACCTGACTTTGACAAGCTCTAACAAATAAGGGCTTTCAGC
1 CCTCTCCCGTTAGTCGAGCTCAAACCTGACTTTGACAAGCTCTAACAAATAAGGGCTTTCAGC
* *
228922 CCTCTCCTGTTAGTCGAGCTCGAACCTGACTTTGACAAGCTCTAACAAATAAGGGCT
1 CCTCTCCCGTTAGTCGAGCTCAAACCTGACTTTGACAAGCTCTAACAAATAAGGGCT
228979 AAAGCCCTTA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
63 54 1.00
ACGTcount: A:0.26, C:0.29, G:0.19, T:0.26
Consensus pattern (63 bp):
CCTCTCCCGTTAGTCGAGCTCAAACCTGACTTTGACAAGCTCTAACAAATAAGGGCTTTCAGC
Left flanking sequence: Indices 228359 -- 228858
TGGCCCTTATGGGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGCTGTAA
GGCGGAGCGAATCCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGT
TGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATATGTACCCGGGCCCTGTACACACC
GCCCGTCACACCCTGGGAATTGGTTTCGCCCGAAGCATCGGACCAATGATCACCCATGACTTCTG
TGTACCACTAGTGCCACAAAGGCTTTTGGTGGTCTTATTGGCGCATACCACGGTGGGGTCTTCGA
CTGGGGTGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGTGGCTGGATGGAATCAATCCTTCGC
GATGGAAATGCCCTCTTCCCCCAACCTACGGGGCTAGCTTGCTGGAATGCGGGCGGGCTTTGGGT
CCAAAGGACACCGGGGGCGAGTCAAAAAAGAAAATCGTTCCCCTT
Right flanking sequence: Indices 228979 -- 229478
AAAGCCCTTACTCTAACAAGTAAGCAAGTAATACCTTCTTGTTCATCAATCGGAAAGAAAGACAA
ACCGCGGGCACTACGGTGAGACGTGAAAACACCCGATCCCATTCCGACCTCGATATGTGGAATCG
TCTTGCGCCATATGTACTGAAATTGTTCGGGAGACATGGTCCAAGCCCGGTAAACAAATGCAAAT
GGAAAAGATTCTGCTATAATTGGTAGCAGTAAAGGTAAACTGATACTAAACGATTTTGAGGCGTT
ACAACTGCTTCCGATTGAGGAGTTGCGCAATACAGACTCTTGGGGGAAGATCGAATCAAGGTCGG
GTCCCCACTAACGGAACAAACAAAGACCTATTTTCAATTGGTAGGGGAAGATGACATGTAAGGGT
AAGGGGGCATCCTCGCAGAGCTGGTAGTAAGTCCTAGAATAGGGGCTACCAGCTGAGAAAAGTAG
CTAGATTCGTTACAGAGGCCAAGCCCACCGCGGGACCCGATCCGA
Found at i:236748 original size:19 final size:19
Alignment explanation
Indices: 236704--236748 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
236694 TAGCATGTAT
* *
236704 GGATATTTATCTTTTATCA
1 GGATATATATCTTTTAGCA
* *
236723 TGTTATATATCTTTTAGCA
1 GGATATATATCTTTTAGCA
236742 GGATATA
1 GGATATA
236749 CCCCAATACT
Statistics
Matches: 20, Mismatches: 6, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.29, C:0.09, G:0.13, T:0.49
Consensus pattern (19 bp):
GGATATATATCTTTTAGCA
Left flanking sequence: Indices 236204 -- 236703
TCTTTCCCAATTTATATCCGATAGACCCGGCTTTCTATTTGGCGATAGCAGTAAGGGCGTCCGTC
CAGCTCCGTGAAACTGAGGCAATCCCCTAGTAGTGGGGACCCAAGGGCAAAAGGAATAGATAACA
ACTAAGTCCCCTCGCTGGAATGTAACCCTACGCATGCCTGCTAATGCCATTTGGCACAGATGTCC
CCGGTGTTCTGGCTGATGATGCGGATATAAACTAGGTTGCCTCATTGTTGATGTTTGGATAGATG
AGAGATCAAGGCGTGATTGAATACGTAGCCAAGCAGGTGGCGCCACACGACATATTCTACTAGAA
GTTGAACTATTATTATTATCTTGCGGAAACAACCTAAGTGCAGGTTTTTTGTTGGTTAACATGTC
AAACAGAGTAAACATGACTATAATACGATATACTTGAGGTTTTTGTTGATATGGTTATTGTTATT
TAGATTTCTACTAGAAGTACATAATAAGACTTTTATAGCATGTAT
Right flanking sequence: Indices 236749 -- 237248
CCCCAATACTAAACCTGCCTTTATGCATTCAGCAAGTACCTTTGCTTTACCCTGGATGATTATAT
CCATTCCTCTCTCTAACGAATGAGTACTCAAACGACTCTTTGTAGAGAGAGACCAGCTCTTGGGA
TTTACAGGTGAAATGCCGAGCCTTCTATTATCATAGAAAAGAGTGAAGTTAATAGGATTTTCTTT
TTTCACTCTAAAGAGGGAGCATAATGTACTAGGGTATTTTCTCCACTAAGCGATACGGAAATGCT
TCCACACCCACAATCGATACAATACTGACAAGACTAAACAGAGATAAGGAATCAACTGCTGCTCC
TGCCCTTATTGATAGGCTTAAAGGAAGGATTGGGCAATCCACTTAAACACAAGGGGAAACCGCGG
GAGAGGCTTCAGCACTTGCTGCGGCTGAGGAGTGAAAGAGGATCAAAGAGCAGGAAAAAACCTTA
GTCCGATTCTCAAGAAAATACGGAATACATCGACTGCCGCGAAGG
Found at i:247565 original size:18 final size:18
Alignment explanation
Indices: 247544--247586 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
247534 CAACCTTGTT
247544 GACTATGACAACAG-TCGC
1 GACTATGA-AACAGATCGC
247562 GACTAT-AAACAGACTCGC
1 GACTATGAAACAGA-TCGC
247580 GACTATG
1 GACTATG
247587 GCAGGGCTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.35, C:0.26, G:0.21, T:0.19
Consensus pattern (18 bp):
GACTATGAAACAGATCGC
Left flanking sequence: Indices 247044 -- 247543
TACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGA
GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTAC
CTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATAACACTTCT
CCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGT
CCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATAGGA
GAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAG
CGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTCACCGGGAGGAT
CGCCCTCCCAATTCGAAGTTTTTTCCTGGAAGTTTCAACCTTGTT
Right flanking sequence: Indices 247587 -- 248086
GCAGGGCTTTAGCTCTGCTCTCTCGCGACCCCTACTCTAATCAAAAGACTAAAGGCCCCTACTGA
AGATTTAAAAGGCGAGCACTGAAATGAGAAATTTCATTCGTGACGCTGAACGACACATTCTAAAA
CTAAAGCGCACACTAGAAAGTGCTTCGAAAGGTGTCAGCAGGTGCGCGGAGCCGGAGCCCGGCAT
GTTCGCCTGCTGGGCCGAGTGTTCGCCCACTTCAGAGTCTTCGCCTTTAGATAACAAAAAGTGTC
CGCCCCTTACCGCTCCGTGGGGTCGCCAAACTACGACGAGAGTTTCGCCTTTTGAAGCGCCAGTC
GCGTAGGGCGACCGGGCCAGGCCGAGTCAGAAAGGCTTTGATGACTCAAGGTTCATATTAGGGAA
AGGAGAGTGAGGGGAAGAGGGGGCAGCCCTCGGCCCGATCATCCAATTCACTCCAACAGACAGGC
ATGGTTCTGTAGTCAAAGCAACTTCGTCACTTTCGTGTACCCATC
Found at i:251777 original size:19 final size:19
Alignment explanation
Indices: 251753--251792 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
251743 TTCATTGACT
251753 TCCCTTACTTTGATTTCAA
1 TCCCTTACTTTGATTTCAA
*
251772 TCCCTTGCTTTGATTTCAA
1 TCCCTTACTTTGATTTCAA
251791 TC
1 TC
251793 ACTGACTTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.17, C:0.28, G:0.07, T:0.47
Consensus pattern (19 bp):
TCCCTTACTTTGATTTCAA
Left flanking sequence: Indices 251253 -- 251752
GGACCCTTTCATGCTCTAAACGGGAAGTAGAGTGGTGAACGATCATCTACTTATAGTAGAGTGGT
TTCTTCTCCTGGACGATGAGCTTCTCTTAGTCATAGTAGGGGCTCAACTCGCTACTCAATTAGAT
GTCAGTGCTAGAAGCGAAAGTCCAGGGATTGGAGAATCGATACAGCTGGTGAATCTTGAGGAAGT
ACGGTACGTCTAAGGTTAAGGTCTGAAGCCGATGTTCATTGGCCTTCCGCGCCTATTCTTCCTTT
AATTCCTCGCCAATTTGAGGTCAAGCGGCTTCACTCTTAAACTACCTGAACTATAGGAGCGGTAC
GAGCTACTAATAGACTGACTACAAAAGAAAGGCTATTTGAGATCCTTTTTCAAGGCTCAATCTGA
CCCATGAGACCGATTAAAGAAGGGGAACTCCTTCCAGATATCGATTAACTGCTTGCCAACCTATC
TCTAGACTGACGGATTTACCTGCTGACCCCGCGACTTCATTGACT
Right flanking sequence: Indices 251793 -- 252292
ACTGACTTAACCAAATCAAAGACCAGATATAATATAAGTGGTGAACGAGACGCCAGATATAATAT
AAGCCCTACTCGAACCGGAAAACGTTGATTGACCGTTCCCATCGTGACCCAGTTCCTTTGTTTGC
TTGTGCGCGTGTTGCCTATTCAAAATACGAGGTGAAAGAGAGACGAGTACGAGGTTCATAACTTC
TAGACAAGGGGATTCCTTTAGGGAAAGACGCCTATTCTGATTATGACGATTGCGATTGAAGCTCC
CGCTGGTGTATCTGGTCAAGCTCAAAAGAAAAGTTCCTATTTTCGGAAGAGTCACTGTGACCGGA
ACTTCAAATACCAAGTTCGGTTTAGGTTGCTGTCCCTGCGCTAGCTGCGGGAAGTGTGCTGTTGA
CTTCATGATAGTGACCAAATACGAAGTAGTCTTCTTTCGTTCTCTTCTCTTCTTTTTTTTTTTAG
GGCCTTTCTCGCTGGGCGAGCGCACTTTACTAATATAATATCAAG
Found at i:305422 original size:63 final size:62
Alignment explanation
Indices: 305349--305476 Score: 229
Period size: 63 Copynumber: 2.0 Consensus size: 62
305339 ACTACACCTT
*
305349 CCTCTCCCGTTGGTCGAGCTCAAACCTGACTTTGACAAGCTCTAACAAATAAGGCCTTTCAGC
1 CCTCTCCCGTTGGTCGAGCTCAAACCTGACTTTGACAAGCTCTAACAAATAAGGCC-GTCAGC
*
305412 CCTCTCCCGTTGGTCGAGCTCGAACCTGACTTTGACAAGCTCTAACAAATAAGGCCGTCAGC
1 CCTCTCCCGTTGGTCGAGCTCAAACCTGACTTTGACAAGCTCTAACAAATAAGGCCGTCAGC
305474 CCT
1 CCT
305477 TACTGACGCA
Statistics
Matches: 63, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
62 8 0.13
63 55 0.87
ACGTcount: A:0.24, C:0.33, G:0.19, T:0.24
Consensus pattern (62 bp):
CCTCTCCCGTTGGTCGAGCTCAAACCTGACTTTGACAAGCTCTAACAAATAAGGCCGTCAGC
Left flanking sequence: Indices 304849 -- 305348
CCAGGGATTCCTCTTCCTATTTTCCTATTTGAAGTAACTAGTCAAGTAGAAAGTCTCTCTTTCAG
TACGTAGCAAGAAAATGATGTATATGATGTATATATAGTTAAGAGGCGAATCGCAGACTATTCTT
ATTCTTACCGAGGAATAAAGGAGCTATTAGTGGGTCGGTAAGTCACTTCAACTTGTTTCGTTAGG
AACCCTTAGTTCGGACCCCTACTATAGGCCCCCATGCGAAACTTTCCGGGCTCTTGATCGCAGCA
ACACACCTTCTTTACAACATAGCCTAAGTCAAACGAAAGTGATTTTCTTGTTTTCTTTATGTCGT
ATCTTTTGGTTTGGACCAATGTCCCATCCACCGCCCATAGAGTATGCTATTCGCGCTTCAAGCTA
TCTTATAGAGTGGAAATCATGCTAAAAGCAGGGCAAAGAAAAGACAATCATTGGAAGACGTAACC
GCCGTAGAAACCCGAGAGCGGGCAGACAAAAAAGAACTACACCTT
Right flanking sequence: Indices 305477 -- 305976
TACTGACGCAAGTAAGTGAGAAAAACCTTGCGAGAAGCCTAGCAGAGAGATACGGGATTAGACGG
CTTCAGTTGGTGTTCCCCCTTGGGGGGGCTAGTGGGTCCTTAAGCGACTGCTTGGATTAGTGTCT
GGAGTTCCTTTCTTTCGGTGTAGTGGCCTGAAACTTAGTGTTATGAGGACCTCCTGGAAAGAAAG
AGCCCTAACAGAGAGTATTTTTTGCGAGGGAAGATTTGAAAGACAAGATGTTTGTAGTGGTTATG
GAGGGGCTTGTTTTCTGGCAAATATTAGTTGCGACTAGTTTAGTTTTCCTTCCTTTCGTACGTAA
GAGAAGCCCTTAAGCGAGGGGGTGAAGAATGGGGGTTTTTTAAAAAGTCTGTACTCAATTCACTA
CGTTTGCTGCCTAGGATCCATAAGGAGCTTCTCTTAGCTGACAGCCGTCAAAAGCAACAATACTC
AAACTTCTTGCTTTGGCCGCTTAAGGTTAAGGAGGGTCCTCTCAA
Found at i:309579 original size:21 final size:22
Alignment explanation
Indices: 309546--309588 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
309536 TACCGGAAGC
* *
309546 GAAGCTTCTGGCTCCC-CCTTT
1 GAAGCCTCCGGCTCCCTCCTTT
309567 GAAGCCTCCGGCTCCCTCCTTT
1 GAAGCCTCCGGCTCCCTCCTTT
309589 TCGTTCTACT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.09, C:0.42, G:0.19, T:0.30
Consensus pattern (22 bp):
GAAGCCTCCGGCTCCCTCCTTT
Left flanking sequence: Indices 309046 -- 309545
AAAGTGAATATTTGAATCTTCCGCATATCTTTGATGTCCCCTAGCGCTTAGTCATATCAGGGGCA
ATCTTCTATTCAATTACCTTGGTTTCATTCCTCTCCTTACCAGTCGAGCTCAAAACCTGACTTTG
ACAAGTCAAAGCTCTAACAAATAAGGCCTAAAACCCCTCTCCCCTTGGTCGAGCGTCTTTAAACC
TTAGCACAAGCACTAAGTAAGAAACCTACCTTTTGACAACCTTACTAATAGAAAAAAGGGGAAAG
ATGCGCTCAATCCGTTGCTTGTTGCTCCAACTTAGGAGTAGGGGCTCTAGAGCCTTTTCTGCAGG
CTGCTATGCTAGTTGTAGCGCGCTAGCGCTTTACTAATAGAATATCAAGTAAAGGGGACTTTATC
ATGATCTTACGAATCTACAACTCTCTTTACTGAGCGAGACTCTACCCAGATCTAAAGAATTCGCC
AAAGAGCCTTCTTCTAACTAGGAGAGTAAGCAAGCTACCGGAAGC
Right flanking sequence: Indices 309589 -- 310088
TCGTTCTACTTAGGTGGCCGAACTCTCGACAGAAAAAGAGGTTTTTATTCCTGTGTAGACACCTC
AACGAACTCATGTGGACACTCCTCAGCCCGAGGACAATCTCTCAAAAATACACATTGTTGACCCG
TTTTTCTTTTCTTTGCTGATTCCTCTCAATGAAATTTGCCATGTTGCACTAAGTTACTTACGGAT
GTATGCATGCGGTCCGGGAACACTTTGGGGTGAACACCCATCCGAACAAGTAGGGTCAATAGTTC
AGCATTTAGGCCGTAACATTTAGCAACAAAAAAATCTTTAACCCAACAAGTGCTCTCCGAACCAA
GCTAGATAGTCTCCTATCACTAGGCTCACCAACCAACCTGGACTTTGATTCTTATTATTCCTACC
GGATATCAAAACCATAAGGATTGTTTCCACCAGCCATGAGTTCCCATATGACATAAGCGCTCTTG
GGTGGGCTGGGCCATTCCATCAAATCTTTGAGAAGGGGCCCAATC
Found at i:340525 original size:21 final size:21
Alignment explanation
Indices: 340501--340542 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
340491 GTAAGCCATT
340501 TGAAGTAGACA-GGGAATTGGA
1 TGAAGTAGACATGGG-ATTGGA
340522 TGAAGTAGACATGGGATTGGA
1 TGAAGTAGACATGGGATTGGA
340543 CAGCGGCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 17 0.85
22 3 0.15
ACGTcount: A:0.36, C:0.05, G:0.38, T:0.21
Consensus pattern (21 bp):
TGAAGTAGACATGGGATTGGA
Left flanking sequence: Indices 340001 -- 340500
TTTCTTGGCCTTCTCTTCAATCCAATAGCAAGAGAAGGTATAGGAAGACAAACCTTATGTCAAAG
CTTCATGCTGACTTTTTTACCCTACTTCCTACATGCCTGATCTTAATGCCATTGAACAGAGGAGC
GTAAGCCACTTGCTTGGAGAGCGCAAATCCTTACGCGGTAAACCAATAGCAGCGGATTCAGTCCT
TTCCTTCTTTCTTACTTTCATGGGTTGGTTTGGCCTCTTTCCTTCCTTTGAAAGAGATCCCAGGT
GCAGTGCCTATTCACTCTGAATCGGATCTTGCACTTTCAGACCGGTCCTTTTAGCGCTTAGTTAG
TCTAGTCTTTGAGCGAGATCCAATGACTCCGGTTCGTGATCTTCTATCTATAAGATAGACCAAAG
TTGAATGCTGACTGACTGCGGAAGAAGCGGTTCTTTGCAAGAATGCCTTTCGGGATTCGAGGAAA
ATAAATAAGTGATGCTCCAAATCCCTGTGGATAGGGTAAGCCATT
Right flanking sequence: Indices 340543 -- 341042
CAGCGGCAAAGATAGGCCTGATCCAGGAATGGCGGGAGGGATTACTTGCCCAAGGCCCGAAATGC
ACAGATGCAAGAAGAGAGCAGAGGAGGATGATGCTAAGACCGGAAAAGCATTCATTTACCTTTTT
CAAACAGTGGCACTAAGACTTGCAGCCTTTTCTGTGCTCGTGGATATTTCTACTATTTCCTTTGC
TGCTCGCATTCCTGCTTGAAGGCAAGAAAGAACTCTCAAAAAGACGGAAGATCTTGCCATATAAT
AGTAAACATGATCCCATGCTGTTAATAGTAAATCGGACTCGAAGATGGACATGAAATCAGTTCCT
TGGCTTCCCGCCTTAAGAAAGAAAGCCCGGATGGAGCTAACAGCCTATTTGTCATTCATCCCCAT
CTTCCTTACTATGCATGTCCCCTTCCTCGTACAAAAACAATTTCATTGCCTCTAGCATCCTTTTC
TGGGCATATTAGGTCAGTTAATCCCTCACAGCTGATTCAATTGCG
Found at i:418398 original size:18 final size:18
Alignment explanation
Indices: 418375--418411 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
418365 CACTGATCAA
*
418375 AAAGAAGATTTTGGAGAG
1 AAAGAAGATTTTGAAGAG
418393 AAAGAAGATTTTGAAGAG
1 AAAGAAGATTTTGAAGAG
418411 A
1 A
418412 TTATTCATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.30, T:0.22
Consensus pattern (18 bp):
AAAGAAGATTTTGAAGAG
Left flanking sequence: Indices 417875 -- 418374
CCGTAAAAAAGGATATTCACTGTTATAAGACTTGGCTTAATCGAATAGAAAGAGGGTCGAGACGA
GTTTTGTTATCCAAGATTTTGTCAAGGCCAAAGAAACGACATCGACCTTAATTAAGGATATGATT
CTTCCATTCTATCAAAAAATCTATGAACAAGCCAAGTCCTAGTTAGGTTTGAAGAGGTGGATATA
CCCGGCGTGGCGCTGCTGGATGCTTCTGATCAATAGGAAGAGGAGGAAAAAAAAAAGCTTATGAT
GAGCATCTATTTGAGTCGATCATTTCCAAGATCTAATTCAAGTTTATTCTTATGTAGTGGAAAGG
CCTTACAATCTGAAGTTTTACGCTTAAGGGAAGAAATGTTCTTGGTGGATGCAGGACCTGGGACC
CCCAGAATTTGTATGCAAGATGAGCCTACAGGAGTGCCAATCAACCGAGCCACCAGGTTTGAGAA
TAAGGTGGAATCCCTGGATCTAGTGGCCGGTGAATCACTGATCAA
Right flanking sequence: Indices 418412 -- 418911
TTATTCATCAATCTAGTGGCCGGTGAATCACTGATCAAAGAGCGAGCAGCCGCCAGGTTTAATGC
TTTGGTGGGATCCACAGATGTAGTGGCTGGTGAACCGCTTCTTCTTCTTCCACGAAGATTCAGAC
AAAAGCGAGCTTGGATGGAACTGAACAAGATTTGGCGAACGAATACAAAGGTCAAAGGCTTTTTT
TTTAAGAAAGTCAAAGGAGGCTATAAAGTAGCCATCGCGGGTTTCTTGACCTTTCTTCCATTCCG
TTTTACCAAAATGAAAGGGATATCGAATGATCGATTCACCATTGAGAGCATTAACCCCAAAAGGA
CGAATATTGTGGTGTTCTACTAACAGCGGCAGATCAAACAAGAACTTGATGAGCGAAATCTGCTG
ACGAAAAAAAAAGAGCAGTTTTTTCAATTCCGAAGCGAAGCCTAGCGTCTCCTGATAACACTCTA
TCACCTTAATCCATTCTTTTGTTGAGGGTCTGGCACTTATTACAG
Found at i:428130 original size:10 final size:10
Alignment explanation
Indices: 428115--428146 Score: 64
Period size: 10 Copynumber: 3.2 Consensus size: 10
428105 ATACTACTAT
428115 TAATATAAAG
1 TAATATAAAG
428125 TAATATAAAG
1 TAATATAAAG
428135 TAATATAAAG
1 TAATATAAAG
428145 TA
1 TA
428147 GCTGTACAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.09, T:0.31
Consensus pattern (10 bp):
TAATATAAAG
Left flanking sequence: Indices 427615 -- 428114
GAAGCAAAGCTTCTTGTAGTCGGCCCGTAATGCCTCCCTTCATTTGCTTGCCTCCTCCCAGCTCA
GAATGCCTAATGCCTATTATCTTATCTAGAAGCTAACCGCCAGAAGCTCACCCTTCGGGTGTCGC
TTCCAGCGCGGGAGGCCAAGCATTCTGCTAGACGTCCCGGCCTGGGAGCCCCGTTCGCCTTTGGT
ACTTCAGTAGATCTTCAAAAAAAAAAGCGCTACTTCAATGCAGCCTTAACTACAACTACATTACG
CAAGCTCCACCAATACCTATACCTACCTATAGAGTCAAAAAAGTACCAGTGACGGTTACTTTCTA
GGTTTATGGATTCAGTCAGCTAAACTCCTCAATCAATATCAACAACATGTCGTGACCGGTTAGGC
TTGGTTTACTTTGTAATGAATGTAAACTAAAATAGGTGGCGTTTATTCAAAGAAAGGGAACCGAA
GGTTTCCTTGGTACTTTAGTAGTACGACTGTTGTTATACTACTAT
Right flanking sequence: Indices 428147 -- 428646
GCTGTACAACAGAATGCCGTTCGCCTTTACTTTAGTATTGAGTAGTACTTAAGTAGCTAAGTTTC
CAAAGGTGGGTGAACAGCCCCCTGTCCTTTATAGTCGTAAAGGGCTTCTCAGAAAAGTCAGGAAG
GAGGCATTCGAAAGGCCGACCACTATATCATAGGCCTTCTGGTGGGAAGGCCGACGACTACACGG
ACTCTATACCAAGTCATGAGCGATAGCGAAGCCAAGCCGCCGCCTATAGGCGAAAGGACGAAAGC
CCCACGAAGGCCTATGATATAGTAAGAAAGAAAGTACGAAAATAAGTACGTTAAGGTTACGAAGT
CACTTAGCCGTCTACAAAGGGAAAGGCGTCGGTACGGAGTCACGTCAGCTGTGGATATAGACTAG
GCTATAAGGAACAGAGTCTTAAACTATGGACCGAGACTACACTAAGGAACAAGGAAGCTTGACTG
AGCAAAGAAGTCAAGGAACGAAGCTGCTTCTCTAATAGCCCCGTT
Found at i:531731 original size:15 final size:15
Alignment explanation
Indices: 531707--531743 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
531697 CTACTATTCA
531707 TAAGAAATACTGATT
1 TAAGAAATACTGATT
*
531722 TAAGAGATACTGATT
1 TAAGAAATACTGATT
*
531737 TATGAAA
1 TAAGAAA
531744 GCCCGGTGAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.46, C:0.05, G:0.16, T:0.32
Consensus pattern (15 bp):
TAAGAAATACTGATT
Left flanking sequence: Indices 531207 -- 531706
TTCAAGCCTTTGAAACTATTTCAAATAGAATTCAGGCCTCTACCAACAACCAAGACGCATGAAAG
CGGTTTCCAGCGCTGCTGGGCAGAAAGACATGATGGCATGAAACTCGATTACGTACGCTGATTGT
TCGTCCACTTCAAACGCTCAAAACATACCATTTTCCGTGTGAAATGACAGGGATTGGTTTGGTTA
CTTAGGGAATTCCAAGCAAAGCAATCTACGCAATTTCCGAGTTCAGTAGTAGGAAAGAAAGGGAC
CTCTCACTCAATTCAATAACATGTATGTTCTAGGGCATCTTTTTAGAATAATAATGTTCGCATTT
TACCAGGCTTTTTGGACGTTCCATGATTAAACCGCCTAGCGGCACTTTCGAGATGCCACCTTGTT
TATAAAAAAAGTCTTTTTAATTCCATTTGACTCGGGGCGGCAGGGACCCTCCAACAGAAACCTCG
TCTTTTTTGTCGTCGATAAGTTCTCCCTCAGTGCCCTACTATTCA
Right flanking sequence: Indices 531744 -- 532243
GCCCGGTGAGGCCTCAACCGACAGCTAAGCTTCGTTCTGTGGCGGTTTTCAAGCTAGCACCCGTT
TCAGACTTAAATGCGGGGACACGTGAACTGTGAAATCCGCAAGAAAGAGTTTCCTACCCTACTTA
GCCTTACCCAAAGGCTTGGGTGAGTTTTTAGTCTTTGGTTGAGGGCCAGAAAAGTTAAATCATTC
GCCGGAGGAGAAAGAAAAGAGTCCAGGCCCGCCTGCATGGTCACATGACTTCTTAATATTCTTCC
CTTGGAACTTATAAAAGGTCCGCATTGCACCTTCCTATCGGCTTCGACAGAATTTCCTTTCCTTT
TAGTCGAGCATATTCTAACCTTTGAAATTCCTTTTTATTTTAATTCGGTTGACTTTCTCATTCTC
TGCTCTTATCGGCTCAATCATGAAAGAAAAGACCCGACGACGGCGAGAAGCCTTATTTATAAAAA
GAGAAACTACAACACATTCAGTTTGGCTCTTTGCCACCAAGCGTC
Found at i:565408 original size:16 final size:17
Alignment explanation
Indices: 565376--565421 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 17
565366 CATCCCTTGG
565376 GGTTAGTTCATTCTCTT
1 GGTTAGTTCATTCTCTT
*
565393 GGTTAGTTGA-TCTCTT
1 GGTTAGTTCATTCTCTT
* *
565409 GCTTAGTTTATTC
1 GGTTAGTTCATTC
565422 CATTTACTGC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 14 0.56
17 11 0.44
ACGTcount: A:0.13, C:0.15, G:0.20, T:0.52
Consensus pattern (17 bp):
GGTTAGTTCATTCTCTT
Left flanking sequence: Indices 564876 -- 565375
TAACCAAGTCGAGGCAACGGTTGAAAAACCACTTCAATAGTAAGCAGAAGATAAGAGGGAGAACT
ATAAGATTAAGCCTCCGGACCGGAAGAGGAAGTGTCGCTGGTCTTGACTTTGCTTGTCTTTTTTT
CTTCCTTACTCTAACAAGTAAGCAAGCGCTACGCCCCCTTAATAAACCGGTTTTTTTCGGCACTC
GGTTCCTTCGTCTTAAGTCAAGTTCAGTTTACTTTTTCGATTCGGAACTCTTAGTCGAGCTGATG
GCGATTTTTTGTTCGAGGTTCCAGAAAAAAGAGAGGAAGCACCGCCCAATGGTGCTTTTACGAAA
GAGCTTAACTAATAGGGCACCGGTGGCTAATACCTTCTCGACACTATCGAACCTGAAATCCACTC
TCAATCGCTCTTTTTAGTGGGGAGGAATTGTTTTCGGAATTCTATTTTTTCCTGGGCTGGGGCTT
TCAATGGGACCATGCCTTGGATTTCAATCCGAGATCATCCCTTGG
Right flanking sequence: Indices 565422 -- 565921
CATTTACTGCCCCTCTTTTGCTTGATGAAAGACATCCTGGCAAAGGCCGTGTATATTAAAAAAGG
GGACTTTCATGGGTCCGATGGCTCTTTGACTGGTGTGCCTGAAAATGTGATGGATAAATGGGCTT
TTGAAACTCGATTTGTCGCAACAAAACAAGAGGTATTGTCTCCGCCTTTTCAAGTAGGGATCATC
TCTCAAGTGTTATGATCCTCCATTGCTGCTCGGTAGTGGCCTAAGGCTCAATGATTGATCTTCTG
CGCTAAGGCTAGCATCTCATCCCATCTTTCATCTACTAGCATTTCTCATCTTTCATCTTATTGCT
TTGAGCTCTCTTCGGAAAAGTGTAAAAGTGTAACCTGCTGCTCCTTGATTTCACATAAACAACTG
AGTGCCTTCTGCTCCTTTTGGTCTTCTCTTTCTGTGTCTATTGATCTCCTGCCCACTCACATTCT
CTTTATCGAATCCTTCTAGGCAGATATGACTACTCCTGCTTGCTC
Found at i:569080 original size:71 final size:70
Alignment explanation
Indices: 568947--569082 Score: 218
Period size: 71 Copynumber: 1.9 Consensus size: 70
568937 CTTTCCCGTT
*** **
568947 AGTCGAGCTCAAACCTGACTTTGACAAGTCAAAGCTCTAACAAATAAGGCCTTTCATTCCTCTCC
1 AGTCGAGCTCAAACCTGACTTTGACAAGTCAAAGCTCTAACAAATAAGGCCTAAAACCCCTCTCC
569012 TTACC
66 TTACC
569017 AGTCGAGCTCAAAACCTGACTTTGACAAGTCAAAGCTCTAACAAATAAGGCCTAAAACCCCTCTC
1 AGTCGAGCTC-AAACCTGACTTTGACAAGTCAAAGCTCTAACAAATAAGGCCTAAAACCCCTCTC
569082 C
65 C
569083 CCTTGGTCGA
Statistics
Matches: 60, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
70 10 0.17
71 50 0.83
ACGTcount: A:0.33, C:0.30, G:0.13, T:0.24
Consensus pattern (70 bp):
AGTCGAGCTCAAACCTGACTTTGACAAGTCAAAGCTCTAACAAATAAGGCCTAAAACCCCTCTCC
TTACC
Left flanking sequence: Indices 568447 -- 568946
CCTATCTCTAAAGAAAAAGGGGCTTATGCACTCCACTCGCTGTCTACTAAACGAGCGTTAGAGCG
AGCGAGCGAAGCCTTCCATTTAGTGGCTTCCCCCCTTATCCCTCACCCTACTCTTTCATTTCCGC
TTAAGCTTCCCCGGTTTGTGGGATTAATTGATTGGATACCCAAGAACCATAATCTTTCCTAGGAA
CAGCTTCTACGACGATAGATAGGGGTCAGGTTTGTTTGGCATCTATGCCCCCCTGCCCTCCAAAC
AGTATGGGAGCCTTTCAGCTCGTACTGCTCACACTCCTAGATCTTCACGGCACCTCCTCTACCAT
AGTGTGAGCTGCTCCCAGCTCCGAAAAGCGAGGCCTACTTACAAATTAGCTTTCAACAACACCAC
GAAAAAAGTAAACTATGGTTGCCCACTGATCTGATCATAGGTTAAATCCAATCCCTTCGCCTCTC
GGAAGCGAGAAAACGAGCAGCAAGCTGAAAAAGCCCTTTCCCGTT
Right flanking sequence: Indices 569083 -- 569582
CCTTGGTCGAGCGTCTTTAAACCTTAGCACAAGCCCTAAATTTTCATAATAATAAGGTAAGCTTC
ATAGCTCCAACCTAGACAAGGGGCAAGCCAAAACCAGCTGAAGTAAGGGCTTAATAGCCTTACCT
TATTATTAGAGAAAGGGGAGCTTATTATTTATATTATTCTAATACTAAAAAAAATAACTAGGGTT
CCAAACCTTATTTAGTATTATTATATAATAAATAATAATAATACTAAATAAGCTAAGGGGGCTGG
GAATCGCAAGAATTGATAAGTCCTTATCATTGAATGGGGTGGGAAAGACAGGTTCGGAAATGGCC
GGATTAGCAGGAGGAAGGGCGGCCCCACCCTGAAACAAAGGTGTACGTACATAAAAAAAAGCTGG
TTATGGCCTTTACTTGATAGGGCTCCTTCCCATCTATCTTGACCGGGAAGAGAGAGGAGGCCCTT
GCGGAAGCCCTGCCCGCCTTTCTCTATCTCTATTTTTAGGGATCC
Done.