Specifications
==============

Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt1/NC_027976.1/NC_027976/Repetitive_sequence/123.misa.ini"

Definement of microsatellites (unit size / minimum number of repeats):
(1/10) (2/6) (3/5) (4/5) (5/5) (6/5) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           346544
Total number of identified SSRs:                 65
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    5


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	60
2	4
4	1

Frequency of identified SSR motifs
----------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	total
A	-	-	-	-	-	1														1
C	-	-	-	-	-	10	4	2	1	2	1		1				1		1	23
G	-	-	-	-	-	11	6	5	2	1	4	1	1	2		1				34
T	-	-	-	-	-	2														2
AG	-	1	1																	2
TA	-	2																		2
TATC	1																			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	total
A/T	-	-	-	-	-	3														3
C/G	-	-	-	-	-	21	10	7	3	3	5	1	2	2		1	1		1	57
AG/CT	-	1	1																	2
AT/AT	-	2																		2
AGAT/ATCT	1																			1