123.fas.2.7.7.80.10.50.500.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_027000
Parameters: 2 7 7 80 10 50 500
Length:  737091

Tables:   1   2   3   4   

This is table  3  of  4  ( 397 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
515309--515344	13	2.8	13	100	0	72	63	8	27	0	1.23
515468--515543	13	5.8	13	95	0	134	53	9	13	23	1.67
515468--515543	39	1.9	39	100	0	152	53	9	13	23	1.67
516129--516157	10	2.9	10	100	0	58	79	10	10	0	0.94
516264--516323	29	2.1	29	83	0	75	45	23	6	25	1.77
517260--517358	31	3.2	31	100	0	198	35	13	26	25	1.92
530971--531024	27	1.9	29	88	7	85	37	24	12	25	1.91
543579--543606	14	2.0	14	100	0	56	21	7	7	64	1.43
548484--548529	24	1.9	24	86	0	65	10	26	15	47	1.78
548523--548600	33	2.4	33	91	0	120	24	23	14	38	1.91
549668--549694	13	2.1	13	100	0	54	33	14	14	37	1.88
555366--555399	15	2.3	15	100	0	68	32	0	61	5	1.20
565713--565742	14	2.1	14	100	0	60	50	20	0	30	1.49
567257--567309	27	2.0	27	100	0	106	22	26	13	37	1.91
567381--567419	20	2.0	20	100	0	78	41	35	0	23	1.55
567531--567574	18	2.6	17	89	7	63	25	25	11	38	1.89
568098--568193	16	5.9	16	92	4	165	30	37	0	32	1.58
568092--568192	50	2.0	50	100	0	202	30	37	0	31	1.58
572889--572932	22	2.0	23	95	4	81	25	20	27	27	1.99
582649--582714	31	2.1	31	88	5	98	30	9	30	30	1.88
582790--582819	15	2.0	15	100	0	60	0	40	6	53	1.27
583802--583842	19	2.2	18	91	4	64	12	24	24	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
586688--586723	18	2.0	18	100	0	72	50	11	27	11	1.72
598639--598712	28	2.6	28	100	0	148	24	21	36	17	1.95
601954--602012	30	2.0	30	100	0	118	30	10	15	44	1.79
602322--602350	15	1.9	15	100	0	58	27	31	6	34	1.83
602375--602437	31	2.0	31	90	0	99	23	28	12	34	1.92
602803--602865	29	2.1	30	85	2	83	39	15	31	12	1.85
603281--603318	19	2.0	19	94	0	67	36	21	18	23	1.95
603834--603889	28	2.0	28	100	0	112	35	10	25	28	1.89
605512--605597	40	2.2	40	100	0	172	25	13	17	43	1.86
605822--605878	24	2.4	24	100	0	114	17	10	29	42	1.83
605875--605915	17	2.4	17	91	0	64	39	12	24	24	1.89
606314--606362	22	2.2	22	88	0	71	16	14	24	44	1.84
606379--606420	11	3.8	11	90	0	66	33	11	19	35	1.88
606444--606516	35	2.1	35	94	5	130	35	2	26	35	1.71
607675--607735	9	6.7	9	77	22	56	42	3	26	27	1.71
608851--608958	37	2.9	37	91	1	162	35	8	16	39	1.79
609117--609156	21	1.9	21	89	0	62	30	5	32	32	1.79
609610--609676	21	3.4	21	80	16	88	35	11	26	25	1.91
609634--609668	17	2.1	17	94	0	61	34	8	28	28	1.87
610786--610842	21	2.7	21	100	0	114	38	5	28	28	1.78
611078--611130	26	2.0	26	89	10	81	22	18	16	41	1.90
611153--611197	23	2.0	23	90	0	72	31	6	24	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
611175--611208	17	2.0	17	94	0	59	32	5	26	35	1.81
611217--611275	23	2.6	23	94	0	91	35	8	28	27	1.86
611790--611867	28	2.8	28	98	2	147	17	21	20	39	1.92
612348--612410	32	2.0	32	100	0	126	38	3	31	26	1.72
613327--613414	46	1.9	46	90	4	142	31	18	30	19	1.95
613546--613578	14	2.4	14	95	5	59	48	9	21	21	1.77
613823--613908	20	4.1	20	79	16	93	32	26	19	20	1.97
613956--614028	35	2.1	35	100	0	146	27	21	16	34	1.95
614226--614250	12	2.1	12	100	0	50	56	12	8	24	1.62
614328--614368	21	2.0	21	95	0	73	39	12	29	19	1.88
614643--614704	29	2.1	29	93	0	106	30	19	9	40	1.84
615281--615322	15	2.8	15	92	0	66	7	9	30	52	1.61
615677--615751	26	2.8	26	90	8	107	24	8	26	41	1.82
616147--616205	18	3.3	18	90	0	82	40	10	22	27	1.85
616163--616226	18	3.6	18	89	4	85	37	7	28	26	1.84
616399--616425	14	1.9	14	100	0	54	22	22	25	29	1.99
617359--617397	13	3.0	13	100	0	78	23	15	15	46	1.83
617629--617688	19	3.2	19	90	0	93	46	10	26	16	1.78
618041--618096	23	2.4	23	93	3	94	35	23	17	23	1.95
618160--618187	14	2.0	14	100	0	56	28	7	21	42	1.79
618161--618196	14	2.6	14	90	0	54	30	8	19	41	1.81
618384--618419	18	2.0	18	100	0	72	16	11	22	50	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
618614--618652	15	2.6	15	95	0	69	0	12	30	56	1.37
618839--618925	33	2.4	36	78	18	110	20	25	14	39	1.91
619160--619214	20	2.8	20	97	0	101	9	20	12	58	1.61
619573--619607	18	1.9	18	100	0	70	45	2	45	5	1.41
619801--619866	22	3.2	22	77	18	88	39	12	18	30	1.87
619811--619849	17	2.3	17	90	0	60	41	10	17	30	1.83
619933--620031	27	3.7	27	94	0	162	47	4	26	22	1.69
619938--620020	16	5.8	16	63	25	60	45	4	26	22	1.72
620008--620032	11	2.3	11	100	0	50	56	0	24	20	1.43
620077--620152	31	2.5	31	97	0	143	17	19	21	42	1.90
620280--620355	34	2.3	34	90	2	118	30	17	13	39	1.87
620431--620477	23	2.0	23	100	0	94	25	17	17	40	1.90
621142--621199	27	2.1	27	100	0	116	39	6	15	37	1.74
621164--621230	34	2.0	34	93	0	116	37	7	19	35	1.80
621489--621561	18	4.1	18	89	0	101	57	4	30	8	1.47
621731--621761	15	2.1	15	100	0	62	0	19	22	58	1.40
622032--622068	16	2.2	17	90	4	58	35	13	10	40	1.80
622603--622642	19	2.1	19	100	0	80	0	10	25	65	1.24
622933--622996	25	2.5	25	87	2	92	23	14	23	39	1.91
622992--623024	17	1.9	17	100	0	66	12	27	12	48	1.76
623374--623447	29	2.7	29	77	6	91	24	12	25	37	1.90
623455--623544	30	3.0	30	98	0	171	18	14	23	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
623763--623801	17	2.3	17	100	0	78	28	5	23	43	1.75
624681--624715	8	4.4	8	92	0	61	20	11	25	42	1.85
624727--624805	39	2.2	36	82	17	94	26	6	29	37	1.81
624891--624920	8	3.8	8	95	0	51	0	30	10	60	1.30
625307--625340	17	2.0	17	100	0	68	29	29	17	23	1.97
625342--625391	18	2.8	18	100	0	100	34	0	32	34	1.58
625499--625561	16	3.8	17	74	15	60	14	19	19	47	1.82
625524--625562	19	2.1	19	95	0	69	10	17	20	51	1.74
625902--625978	28	2.8	28	90	7	113	37	11	20	29	1.88
632322--632477	54	2.9	53	87	11	185	12	33	14	39	1.84
632356--632477	27	4.5	27	97	2	212	11	35	13	40	1.80
632322--632477	81	1.9	80	85	12	212	12	33	14	39	1.84
633249--633286	20	1.9	20	88	0	58	28	15	23	31	1.96
633286--633352	31	2.2	32	83	8	93	25	16	22	35	1.94
634206--634263	27	2.1	27	93	0	98	36	20	6	36	1.80
635310--635369	30	2.0	30	100	0	120	30	13	30	26	1.94
636586--636680	35	2.5	38	86	10	124	31	18	25	24	1.98
637328--637369	21	2.0	21	100	0	84	19	19	9	52	1.72
637486--637542	27	2.1	27	83	6	71	28	22	17	31	1.97
637870--637919	26	1.9	26	95	0	91	26	14	16	44	1.85
638499--638525	8	3.4	8	100	0	54	22	22	14	40	1.90
638617--638674	17	3.5	17	73	17	68	36	24	17	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
639356--639475	18	6.7	18	88	3	179	28	19	15	36	1.92
639347--639493	36	4.1	36	90	1	190	27	18	15	38	1.91
639347--639502	54	2.9	54	86	3	208	28	17	16	37	1.92
639347--639493	18	8.2	18	86	5	172	27	18	15	38	1.91
639986--640089	34	3.2	32	78	11	104	33	22	21	23	1.97
640410--640436	10	2.7	10	100	0	54	18	22	7	51	1.70
640430--640482	19	2.8	19	88	0	70	22	24	13	39	1.90
640477--640557	15	5.4	15	87	0	108	18	23	16	41	1.89
643871--643968	39	2.5	39	89	0	169	35	19	20	24	1.95
650338--650481	17	8.5	17	81	0	108	27	20	13	38	1.90

Tables:   1   2   3   4