123.fas.2.7.7.80.10.50.500.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_027000
Parameters: 2 7 7 80 10 50 500
Length:  737091

Tables:   1   2   3   4   

This is table  2  of  4  ( 397 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
272589--272624	14	2.5	15	90	4	56	0	13	13	72	1.13
272727--272772	21	2.2	21	92	0	74	13	21	15	50	1.78
272723--272781	21	2.5	24	76	18	70	11	20	15	52	1.73
272872--272929	30	1.9	30	92	0	98	24	24	18	32	1.97
280252--280287	18	2.0	18	100	0	72	16	22	11	50	1.77
285050--285089	21	1.9	21	94	0	71	12	27	37	22	1.90
291832--292049	57	3.8	59	80	11	254	36	11	26	24	1.90
291875--292041	30	5.7	29	82	11	182	38	11	24	25	1.89
292367--292435	34	2.0	35	88	2	104	23	10	26	40	1.86
294724--294761	19	2.0	19	100	0	76	47	10	26	15	1.78
299841--299909	28	2.4	30	74	23	83	31	8	28	30	1.87
299849--299908	28	2.2	28	91	5	97	33	10	28	28	1.89
299841--299943	27	3.7	26	78	15	91	30	13	27	29	1.94
299895--299955	27	2.3	27	97	0	113	26	16	32	24	1.96
300314--300409	31	3.1	31	100	0	192	29	18	27	25	1.98
327341--327376	18	2.0	18	100	0	72	22	44	5	27	1.75
331258--331287	13	2.4	13	94	5	53	26	13	26	33	1.93
331373--331412	17	2.4	17	100	0	80	10	15	27	47	1.77
331515--331568	23	2.3	23	83	0	63	16	31	12	38	1.87
331570--331624	25	2.2	25	100	0	110	21	20	21	36	1.95
331714--331783	13	5.4	13	94	0	122	7	17	21	54	1.66
331742--331797	26	2.2	26	80	6	60	12	17	21	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
331785--331832	13	3.7	13	97	0	78	25	18	18	37	1.94
331826--331895	19	3.5	19	86	5	86	18	32	14	34	1.91
332533--332566	17	2.0	17	88	11	52	29	29	14	26	1.95
333056--333125	24	2.9	24	93	0	113	31	11	30	27	1.91
333076--333136	18	3.6	17	78	13	72	27	13	29	29	1.94
333089--333134	9	5.4	9	80	15	53	30	10	30	28	1.91
333149--333190	15	2.8	15	96	0	75	40	7	38	14	1.73
333203--333228	9	2.9	9	100	0	52	11	23	19	46	1.82
333222--333302	16	5.2	16	71	11	78	16	13	9	60	1.58
333223--333342	46	2.6	46	100	0	240	15	15	10	60	1.60
333597--333634	16	2.4	16	100	0	76	39	15	18	26	1.91
333679--333716	17	2.2	17	100	0	76	23	10	31	34	1.89
333799--333861	29	2.3	27	84	10	85	36	19	25	19	1.94
333925--333980	20	2.6	23	75	21	66	46	12	28	12	1.78
333938--333981	20	2.2	20	92	8	72	47	9	29	13	1.74
334692--334742	26	2.0	26	100	0	102	25	15	27	31	1.96
334843--334905	15	3.9	15	84	15	90	17	39	3	39	1.66
334830--334905	34	2.3	34	97	2	145	17	39	5	38	1.72
334830--334891	19	3.5	19	81	18	89	17	38	6	37	1.76
336666--336697	16	2.0	16	100	0	64	50	18	18	12	1.78
338288--338360	23	3.2	23	90	0	119	26	12	28	32	1.92
338385--338433	24	2.0	24	92	0	80	32	10	40	16	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
346226--346282	28	2.0	28	86	3	78	24	31	10	33	1.89
350396--350435	16	2.6	16	88	7	57	30	17	40	12	1.86
364068--364132	27	2.4	27	100	0	130	20	38	3	38	1.68
365013--365173	28	5.7	28	94	1	286	11	36	15	37	1.83
369566--369601	13	2.8	13	91	0	63	0	44	13	41	1.44
377418--377469	18	2.9	18	94	0	95	32	28	5	32	1.81
382463--382526	33	1.9	33	100	0	128	35	15	20	28	1.93
382944--382981	19	2.0	19	94	0	67	13	13	47	26	1.79
386516--386556	21	2.0	21	85	4	57	17	31	4	46	1.69
388268--388295	14	2.0	14	100	0	56	21	28	7	42	1.79
400255--400306	12	4.3	12	90	0	86	61	23	7	7	1.49
404568--404613	20	2.3	20	88	0	65	34	10	52	2	1.49
409184--409209	13	2.0	13	100	0	52	7	30	30	30	1.85
418474--418518	23	2.0	23	100	0	90	33	22	13	31	1.92
419052--419240	89	2.1	88	87	6	267	28	13	31	26	1.94
421788--421890	32	3.0	36	85	11	160	42	13	27	16	1.86
423414--423549	35	4.0	34	73	10	118	20	24	33	21	1.97
444531--444579	24	2.0	24	92	0	80	32	12	28	26	1.92
457552--457586	17	2.1	17	100	0	70	40	0	42	17	1.49
466764--466861	27	3.6	27	77	9	99	33	18	40	7	1.78
467334--467379	7	6.6	7	87	0	65	34	15	6	43	1.72
467334--467379	14	3.3	14	100	0	92	34	15	6	43	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
467389--467446	7	8.1	7	79	9	55	25	15	10	48	1.77
467389--467437	15	3.3	15	88	2	64	26	16	10	46	1.78
467823--467883	28	2.2	28	90	0	95	39	14	40	4	1.68
473589--473642	24	2.2	24	100	0	108	33	11	42	12	1.79
478623--478663	16	2.6	16	96	0	73	9	14	17	58	1.62
483649--483688	19	2.1	19	100	0	80	32	17	20	30	1.95
484745--484770	13	2.0	13	100	0	52	30	7	46	15	1.74
485343--485376	17	2.0	17	100	0	68	29	29	0	41	1.57
486044--486075	15	2.1	15	100	0	64	28	31	0	40	1.57
489498--489531	17	2.0	17	88	0	50	26	29	17	26	1.98
493601--493725	55	2.3	54	90	1	196	37	10	28	24	1.88
493842--493921	30	2.7	30	96	0	142	37	11	23	27	1.89
493761--493891	59	2.3	56	80	7	165	32	12	30	24	1.93
496346--496425	30	2.8	29	90	9	128	32	11	25	31	1.91
498702--498752	24	2.1	24	92	0	84	43	23	11	21	1.85
500130--500204	38	2.1	36	88	11	111	41	17	16	25	1.89
500335--500378	22	2.0	22	100	0	88	54	22	13	9	1.67
500643--500696	21	2.6	21	93	0	90	31	18	16	33	1.93
500685--500734	25	2.0	25	100	0	100	32	8	24	36	1.84
500974--501024	23	2.2	23	100	0	102	47	21	5	25	1.73
501771--501823	13	4.1	13	95	0	97	47	15	13	24	1.81
502588--502638	19	2.7	19	96	0	93	29	3	29	37	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
502904--502970	32	2.1	32	100	0	134	44	2	23	28	1.68
503500--503538	19	2.1	19	100	0	78	33	25	15	25	1.95
503815--503846	9	3.6	9	100	0	64	34	12	9	43	1.75
504157--504214	27	2.1	27	100	0	116	27	27	17	27	1.97
504744--504814	35	2.0	35	86	5	99	21	32	14	32	1.93
505986--506025	9	4.6	9	90	3	64	45	30	2	22	1.66
506207--506303	40	2.3	42	87	8	135	42	24	11	21	1.86
506367--506465	43	2.4	41	84	5	119	37	18	16	28	1.92
506368--506460	42	2.2	43	86	1	125	36	18	16	29	1.92
506573--506660	40	2.2	40	100	0	176	31	17	18	32	1.94
506885--507010	18	7.2	17	90	4	162	10	21	21	46	1.80
506926--506979	17	3.3	15	94	5	72	11	16	24	48	1.79
507314--507406	48	1.9	48	97	0	177	27	19	8	44	1.80
507314--507423	48	2.5	44	88	8	161	29	20	8	42	1.80
509076--509132	29	2.0	29	100	0	114	45	7	21	26	1.77
509348--509404	22	2.5	22	82	2	69	42	7	21	29	1.79
509477--509556	34	2.4	34	87	4	117	33	16	12	37	1.86
509478--509542	17	3.8	17	97	0	121	33	12	12	41	1.80
509582--509622	12	3.4	12	93	0	64	7	29	7	56	1.54
509843--509929	45	1.9	45	100	0	174	50	26	12	10	1.72
510255--510302	24	2.0	24	95	0	87	20	27	10	41	1.85
510246--510315	21	3.2	21	82	11	86	24	25	11	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
510255--510323	21	3.1	21	81	10	68	21	27	10	40	1.85
510460--510505	16	2.9	16	93	0	83	32	26	10	30	1.90
510441--510540	32	3.1	32	76	9	114	37	25	9	29	1.86
510804--510853	22	2.3	22	96	0	82	44	26	16	14	1.85
511673--511706	11	3.1	11	100	0	68	26	8	17	47	1.77
512974--513045	30	2.3	31	90	9	110	44	13	27	13	1.82
513028--513088	30	2.0	30	100	0	122	37	13	26	22	1.91
513249--513285	14	2.6	14	100	0	74	62	21	8	8	1.49
513544--513595	12	4.3	12	97	0	95	34	17	5	42	1.73
514109--514159	22	2.3	22	96	0	93	43	3	29	23	1.72

Tables:   1   2   3   4