Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_062832
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 283001
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Found at i:38226 original size:44 final size:44
Alignment explanation
Indices: 38163--38251 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
38153 TTAAACCACT
38163 CCTGAGGCACTGAAAGTGTAATATCCGCATCCTAAGGTTTTATG
1 CCTGAGGCACTGAAAGTGTAATATCCGCATCCTAAGGTTTTATG
38207 CCTGAGGCACTGAAAGTGTAATATCCGCATCCTAAGGTTTTATG
1 CCTGAGGCACTGAAAGTGTAATATCCGCATCCTAAGGTTTTATG
38251 C
1 C
38252 ATCAGAATTG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.29
Consensus pattern (44 bp):
CCTGAGGCACTGAAAGTGTAATATCCGCATCCTAAGGTTTTATG
Left flanking sequence: Indices 37663 -- 38162
AGCTGGACCAGAGGAGATGAAATCGCTCGACTAAAAGGAGAAAAAGCCATTCAATCCTGAAAATG
GGCATCCCCTATTATTATTCTAGTTTTGTATCAATATCTTCTTGGAATTTACTTAGCTAAGGCAC
CCACCGGATCTACAACTGCCGGGCCTCAGAGAAAACACTTTTTTAGGTGAAAGAAAAAGTACCTT
AGCACAAGCACTAAGCGATAATAATACCTTTGTTCGCGCTTAGCTCTCCCAAGCAAATTACCGTT
GCTCGTGGACGAAGGGAGTTAGCTCAGTAGTACCGTGGGTAAGCAGTATTATTTTTATGAACCGC
CCGAAAGAAAGATTTATCTATGCCGGTATTTCACAATAGTCGCCGGGATCAGAGAATTAGACAAA
CCCCCCTCCGGTTAGTAAGAATATTAAAGCTAAACAACAGCGACTGGTTGTAGGGCGTATAGCAA
CATAACAAGAATTGACACGATGAAAATCAGTGCATTTAAACCACT
Right flanking sequence: Indices 38252 -- 38751
ATCAGAATTGATCAATACCGTTCATGTGATCGTAAGCTAGTTGCTCAATAACGTAGTGAAAGGCG
CTGACGAAGTGAAGTAATACCGGGCTTTTTATGCCACTTTTTAGTACTCGATAGCGAAAGATACA
CAAGGCTGGGAAAGATTTACTTTAAAGGGCCTACATTCGTCTCTGTAAGCATTATAATCAACAAC
GCTTGACATAGTTTAATAAGATTCTTTAACAGCTTTCCGCTTAACAACAGAGCATCCCTCTCAAA
TATTAGAGCTCTTGCATCCCTCTCAAATATTAGAGCTCTTGCATCCGCACAGCGGATTCGAGAGC
GGCATTTTAAGCATCTCCTTCAGCGCACATTGCCACCAATCTCCGTGGTTTTTCAATGGATTTCC
TCGTAAACGAGTTTATCTTTTGACCAAAAGCGTACTTTACCGTGGGTTTTCTCTCATAAAGAGAT
TGATTCGTCAGAACAGATTCTCTTCCGCATACGGGCGGGATGCGA
Found at i:38536 original size:27 final size:27
Alignment explanation
Indices: 38498--38557 Score: 120
Period size: 27 Copynumber: 2.2 Consensus size: 27
38488 TAACAACAGA
38498 GCATCCCTCTCAAATATTAGAGCTCTT
1 GCATCCCTCTCAAATATTAGAGCTCTT
38525 GCATCCCTCTCAAATATTAGAGCTCTT
1 GCATCCCTCTCAAATATTAGAGCTCTT
38552 GCATCC
1 GCATCC
38558 GCACAGCGGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.25, C:0.32, G:0.12, T:0.32
Consensus pattern (27 bp):
GCATCCCTCTCAAATATTAGAGCTCTT
Left flanking sequence: Indices 37998 -- 38497
GATTTATCTATGCCGGTATTTCACAATAGTCGCCGGGATCAGAGAATTAGACAAACCCCCCTCCG
GTTAGTAAGAATATTAAAGCTAAACAACAGCGACTGGTTGTAGGGCGTATAGCAACATAACAAGA
ATTGACACGATGAAAATCAGTGCATTTAAACCACTCCTGAGGCACTGAAAGTGTAATATCCGCAT
CCTAAGGTTTTATGCCTGAGGCACTGAAAGTGTAATATCCGCATCCTAAGGTTTTATGCATCAGA
ATTGATCAATACCGTTCATGTGATCGTAAGCTAGTTGCTCAATAACGTAGTGAAAGGCGCTGACG
AAGTGAAGTAATACCGGGCTTTTTATGCCACTTTTTAGTACTCGATAGCGAAAGATACACAAGGC
TGGGAAAGATTTACTTTAAAGGGCCTACATTCGTCTCTGTAAGCATTATAATCAACAACGCTTGA
CATAGTTTAATAAGATTCTTTAACAGCTTTCCGCTTAACAACAGA
Right flanking sequence: Indices 38558 -- 39057
GCACAGCGGATTCGAGAGCGGCATTTTAAGCATCTCCTTCAGCGCACATTGCCACCAATCTCCGT
GGTTTTTCAATGGATTTCCTCGTAAACGAGTTTATCTTTTGACCAAAAGCGTACTTTACCGTGGG
TTTTCTCTCATAAAGAGATTGATTCGTCAGAACAGATTCTCTTCCGCATACGGGCGGGATGCGAG
GCTCGACGAGCGGGGGCAGTTGTTTGAGCAGCAGATGAAACTGGAATGAAATAAAGTAATAAGAG
AATGCGGCTGTTTTAACGGCAAGGCACCTTAATATGACATTATTTAAGAGATATATTCATTCTCT
TTCTGCGGAACTAGACCTCCCAGAACAACAAGCACTTATTGCAACCAATGCCACCCGCCAATCAA
TGCTTCAATGGACTCAGCTGCTTCATCCTCCCTTTCAGGCTTTTGACTCCGCGAGGGTGCATCGT
AAATGGGCATCTTGATCCGTAACTCGACCCTTCGAAAATGCTCCT
Found at i:65972 original size:17 final size:17
Alignment explanation
Indices: 65946--65978 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
65936 TTCCTATCTC
65946 TAAAGGGGC-TTACCCA
1 TAAAGGGGCTTTACCCA
65962 TAAAGGGGGCTTTACCC
1 TAAA-GGGGCTTTACCC
65979 TGACACAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 5 0.33
18 6 0.40
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.21
Consensus pattern (17 bp):
TAAAGGGGCTTTACCCA
Left flanking sequence: Indices 65446 -- 65945
TCAGTTTCTCTGAGGCTCTCAAGCTGAGAGAAAGTGTTTGGATGATTTTTGCATGGTTTCAGGGC
GCTTTGAGAAATAGAATATCTTATGTTCTCCTAATATCGATAGGCAAGTTGCTTATTTCTGTGTG
CTCTAGGCTTGACAAGCTAAACAGAAAAACTTTTTTTGGTAAAAATAAGAGGAAGATCCATCTTG
CTAATTAGGATTTGGTGTGTAGACCAAAAGGTATGGGCGCCGGAGTTTCCTCTCGTTGAGATTTT
GGCAATCTCGTGCGGGTTGAAGCAAGCATTAGATATGGGCCTTTCTTCTCTGATGCTGGAGTCAG
ACGCGACGCTCAGGCGGTTGTCTTTGCATTGAATGAAGAGGAGAGAAGCGCGCAAACAGTGTCGG
ACGTTACTTAGGCAATGCCGACCGGCACTTCAACCACTGAAATAGCAGCAAATTCTTTTTAAAAT
TCTCAATGTTGCCTCAATAAAGCAGCTAGGCCGTTTTCCTATCTC
Right flanking sequence: Indices 65979 -- 66478
TGACACAAGTAGTCTCCGCGGCTATACTATATCAAATAGCCTATAGCGCTACTGTACTTGTTTTT
TTTTGTCTGGTTCTTTGCTAGCCAGACACCTGTCAACCAACCATCCTGCAACTATAAGTTCTTTC
GCAAGCCAAGCCAATATCCCTTGATCCGCCCGAGGAGAATCCGAGTGAAAGCAGCAACCAGCGTG
ATAGTAGCGTGTGTCAGCAAACAACTCTAAGCTGAACTGATTACAGATAGGTAGTGCATTCTCTG
AGGTGAGTGAAGTGCCCTACTTCTATCTTACGGGTAGTGGTAGTGTAGCTGGGCTATTGATCCTG
GTGAAGGAGCCCTATCAATCAAGTAAAGGCCGGGCGAGGGGTGATAGAATAGCAAGCAGGGTAAC
TTACGCAAGCAAAGGAAAAGACCCTTCCGACGACGCAGCAGCCAACCACCTATTCGAGCCTGCAA
AAATCTATGTGAACAACTAGGGGCCCGCGATTACTAAGGATCGAT
Found at i:204588 original size:39 final size:39
Alignment explanation
Indices: 204531--204609 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
204521 CCCATCCTGC
* *
204531 AATATCATGATTGGGTCGACCAGGCCAGATCATGAGTGA
1 AATATCATGATCGAGTCGACCAGGCCAGATCATGAGTGA
204570 AATATCATGATCGAGTCGACCAGGCCAGATCATGAGTGA
1 AATATCATGATCGAGTCGACCAGGCCAGATCATGAGTGA
204609 A
1 A
204610 TAGAAAATCG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.33, C:0.19, G:0.27, T:0.22
Consensus pattern (39 bp):
AATATCATGATCGAGTCGACCAGGCCAGATCATGAGTGA
Left flanking sequence: Indices 204031 -- 204530
CACTGGAGAAGGTCATTTTTGGAGGGGTCGGAAGAACGGGTTTAAAAGAAATATATATATATATT
ATTAGTTTGGTTTTTATGCAAAAAAGACAAAACGGGATTGGATTTCCACTCAGAAGGAAGGAAGG
TTAAATACCTTTGACAGGGTTGTATTTTTGGGATGGTGTTCAAACTCCCGAAATGAACCATTACA
GCTGGCGTCGACCAGCTTTGCGATACGTACGGACACGAAGAAGAACGCAGGCAGCGGAAATGCAA
AAGAGAAGAGCAAAGATTCCCGACCCTTATTGACTCAACCACAAATCTGTTGAATGAAGGTAGCT
TGCTTACTCTCAGCCACTAGTTAGAAGGAAATCCCTTTACTTTCTTTCAGAACCTTATGCAGTAC
AGAAAGCAAGTGAGGCGGGCTAAGATTCCATTCGAAGTAAGGTAACAAGATTCGATGTTGCACCA
CCTTCAACTCGATCCGGAGTTTTTCGAGAAAAGGTCCCATCCTGC
Right flanking sequence: Indices 204610 -- 205109
TAGAAAATCGAAAACGTACATAGCTGTTCCAGCCGAAATACTTGGAATAATTCTACCACTTCTAC
TAGGAGTAGCCTTTTTAGTGCTAGCTGAACGTAAAGTAATGGCTTTTGTGCAACGTCGAAAGGGT
CCTGATGTAGTGGGAGCGTTCGGATTGTTACAACCTCTAGCGGATGGTTTGAAATTGATTCTAAA
AGAACCTATTTCACCAAGTAGTGCTAATTTCTCCCTTTTTAGAATGGCTCCAGTGACTACATTTA
TGTTAAGTCTGGTTGCTCGGGCCGTTGTACCTTTTGATTATGGTATGGTATTGTCAGATTCGAAC
ATAGGGCTACTTTATTTGTTTGCCATATCTTCGCTAGGTGTTTATGGAATTATTATAGCAGGTTG
GTCTAGTAATTAGGGGGCGGCCGTTCGGTCGCCTATGATACTAGGACCAATAGGTCAAAAATAGG
TTTGTGCCGCAGGTGTTGAACGATCTACTCTACACAGGTGTGGGC
Found at i:249762 original size:11 final size:12
Alignment explanation
Indices: 249736--249761 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
249726 CTGAAATTTC
249736 TTTCTTTTTTAT
1 TTTCTTTTTTAT
249748 TTTCTTTTTTAT
1 TTTCTTTTTTAT
249760 TT
1 TT
249762 CACCGGTTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTCTTTTTTAT
Left flanking sequence: Indices 249236 -- 249735
ACCTATAGAAAAGATCATCAGAGAGGAGACACCCCATTTTTGATTCCAGCCGAGAAGACTAGTAA
AAGGAAGGATCAAGAATGTCATATATTTCAGGAGCTAGATCAGTTGCCGATGAACAAGTAAGAAT
TGCCTCAACAAAAATTGATGGAATTGGACCTAAAAAAGCCATTCAGGTTCGTTATCGATTAGGTA
TCAGTGGGAACATAAAGATAAAAGAGTTAACTAAGTATCAGATCGACCAAATTGAACAAATGATA
GGTCAAGATCATGTTGTTCATTGGGAATTGAAGAGGGGAGAACGAGCAGACATCGAACGATTAAT
TTCTATTTCTTGTTATCGTGGAATTCGTCATCAAGATGGATTGCCCTTACGCGGTCAACGAACTC
ATACTAATGCAAGGACTTTTCGCAAGCTAATTCGGAAATGAAAGAAGTCTACCGAAAGCCCTTGG
TACTTGTCTGATCAATCACACTGTTCAATAGTTCACTGAAATTTC
Right flanking sequence: Indices 249762 -- 250261
CACCGGTTACTAATCCAGTATACGTATAGTAGGCCTCCTTCGCCACTCCACTAGTGGCTCGGCTT
GGTCTCGCTTCCTTCGCCCGACTATCGGCTCGGCTTCGTCCTAGAAGCTACTGCTTCCGCCTCTC
TAGGCTTCGCTATCGCTCATGACTGGTATAGTATATGGATCTCTCTATGTAGCGGTCGGCCTTCT
ATAAGCTTCGCCAGAAGCGACTAGTAGCTTCCCGAATGCCTCTTTACTTTAGTATGGTCTAGTTT
TTCCAATGCCTCCTTCCTTGCCGCCAACGTACGCTACTAGGAGAGTAAGCAAGCTACCTTGCTTG
CATTCTAGAAACGGTAGCTTCCGCGCCCTTCCTGCCTGCTGAAATTGATGTGAATGATCGTGACA
GCTCTTCAAATCCTATTCAGTCTGATTAGATATGTCATTGAAACAATCCGTTCTGTCTCTGTTTT
ATTTTAGGATTCCGAGAACGAGCCGGCCGATCCTAACATCATTTA
Found at i:263884 original size:18 final size:18
Alignment explanation
Indices: 263863--263899 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
263853 GTCACGGCCG
263863 ATATCGTCACTATCATCA
1 ATATCGTCACTATCATCA
263881 ATATCGTCACTATCATCA
1 ATATCGTCACTATCATCA
263899 A
1 A
263900 CAAGAAAACC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.35, C:0.27, G:0.05, T:0.32
Consensus pattern (18 bp):
ATATCGTCACTATCATCA
Left flanking sequence: Indices 263363 -- 263862
TACTAATCGATAGGGCCTCATCGGTAAGTGCTACAAGATCTCGTACATTGGAACCCATGGTTATG
GACCCGAATCCATTAGTATAGAACATTTTCTTTTCCAAGTGAAATCCCCTAGTATATGAAAGAGT
GAAAAAGTGCTTTCGTTGTTGTGGAATAAGAAGCCTTCGTATCTTAATGCATGTATTTAATTTAT
TCGGAGCTATTAGAGCGGGATCCACTTTTTGGGGAATATGAGTCGAAGCAATAACAAGAATATTT
CTAGTGGAACATCTTTCACAATCCCTGGAGAGATAGTTCACTAATAAACCGAGGGATAAGTAATT
CGACTCATTCACATCCAGATCATGAATGTTTGGAATCCATATTATGCAAGGAGACATTGCTTTTG
CTAATTCGAATTGAAGGGTGATATAAAATAGGTCTATTTCCGGCATCATATCCATAGTTAGCGCA
TTCATCATAGTTAGAAGCTCCAGCTCCGTATCAAGGTCACGGCCG
Right flanking sequence: Indices 263900 -- 264399
CAAGAAAACCCTTGGGCTTGTTATCCAGGAACTTGTTCAGAAATACTGTAATGAAAGGAACATAG
GAGTTTGTCGCTAGGTATTTGACCAAATAGGATCGTCCAGTTCCTATAGAACCTATCACTAAAAT
ACCCCTAGAGAGGGATAGGGCTAAACGGAGCGAAAAGGGTTTTCCATGAGATGGGAAATGAAAAC
TATTAGCCCCACAGGAGGTTTGTGAATAAGTGATTGTCTGATAATGAGCAAGGAATATCCGCCTT
TCTGCTAAACAGGATGTATTGAACTCATAATTCATTAGATACTTTTTATGAATGTCAACTAAGTA
TCGTAAGTAAATTGCTCCCGGTTGTTCAATCATTTGATAACCAGAGTCATTCTTTGATAAATGAT
CACTATGAGTCAGACTCAATAGAATTTGATCAATCCTTTTTTCTGTCGTTAAGGTGGAGAACTGA
ACCAAGAATTCTCTTTCTTTATCACCAATCGAATCACTGTTCGAG
Found at i:275932 original size:18 final size:18
Alignment explanation
Indices: 275892--275934 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
275882 ACCGCCCTGC
275892 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
275911 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
275928 CATAGTC
1 CATAGTC
275935 AACAAGGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 275392 -- 275891
GAAAGCTTTTTTTTCAAGTGTCAGTAGCGGAACGTTCTGTCAATCGGGGAAGGTTTTTGGTGACA
ACACCTGGAGATATCAGAAGTGAGAATGCTGACATGAGTAACGAAAAATCCTGTGAAAAACACGA
TCGCCTGCCAGTGGAAGGCTTTCTGCGTTCAGTCAATCTACGCAGAGTGAATCGGTCCCTAAGGA
ACCCCCGAAAGGGCTGCCGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTACAGAACC
ATGCCTGTCTGTTGGAGCGAATTGAATGATCGGGCCGAGGGCAGCCCCCTCTTCCCCTCACTCTC
CTTTCCCTAATATGAACCTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGCCCGGTCGCCCTAC
GCGACTGGCGCTTCAAAAGACGAAACTCTCGTCGTAGTTTGGCGACCTAAGGGGCCTTTACTCTT
TTGATTAGAGTAGGGGTCGCGAGAGAGCAGAGCGTACCGCCCTGC
Right flanking sequence: Indices 275935 -- 276434
AACAAGGTTTAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACC
GTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAA
GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAA
AGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACAC
GATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGTCGGAAGGAGAAGTGTTATAAGCTTTGA
ATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGC
ATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAA
ATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTA
Found at i:282696 original size:26 final size:23
Alignment explanation
Indices: 282648--282700 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
282638 AGGAATGGGT
282648 GAACGGGAAACCTGTTGTTAGGA
1 GAACGGGAAACCTGTTGTTAGGA
282671 GAACGGGAAACCTGTTGTTAGGA
1 GAACGGGAAACCTGTTGTTAGGA
*
282694 GGACGGG
1 GAACGGG
282701 GCCTGTTGCC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.28, C:0.13, G:0.40, T:0.19
Consensus pattern (23 bp):
GAACGGGAAACCTGTTGTTAGGA
Left flanking sequence: Indices 282148 -- 282647
GTTATTTAAAACCAATAACAACGTAAAAAACACGTGGTTTTGCATGTAGGTGAAGGGTCAAATTG
ATCAAAAAAGGAACGCTCTCACTAAGTAAAACGGCTTTTCTAGGTTTTGTAGCTAGGGCTAGATG
GATTTCGTGTCAAAAGAAAAACGAGTGAAAAGACCATTTCAAGCAAAAAAGACGGGGTTTTAGAC
TTTTTTCCAAAAAGCATGCCACTTCACTTCTTATTCACTTCCTCACTTTGTTTACTTCGTAACCT
TTGGTATTGCGTCTCATCCAGGTGATTAATATCACGTCATAGCATTTCTTCCCCTGCTTCTGAAA
GAAAAGAATCATATGACTTACCTAGGCGGTTGTACCACTTGAAAGGTGACATTGAAGAAGCTGAA
TCGAAACTTATACGATATTGTAGAGAACCACTCTGAGTCTTTATTCCCCTAGTCTTCTTCGCATC
CTTACTTACCTCCTTATACTACTGTAAGCATATGAAGGAATGGGT
Right flanking sequence: Indices 282701 -- 283001
GCCTGTTGCCAAGGAGAACGGATAACATGGAAAGACAAGGAATACAAGGAAAGACAAGGAAAGCG
TGGGAGTTGCCGGGGTAACCTCCCTCTCCGGTCGAGTAACCTTCTACCTCTCCTTGTTGCCGAGG
AATTCCATTCCTATTCAAATTCCCGGGAAAGTCGACTTTGTTCGATAGTTCCCATCTCTCGATCA
CCCCACAAGAGAAGCCACTCGAACGAATAGCTCCTTTCTTGCCGTGGAATTCCTCAAAGCTATAA
TATAAATGGAATTCTCCCTTGACTCGATCTTTAAAAAAATT
Found at i:282757 original size:10 final size:10
Alignment explanation
Indices: 282729--282763 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
282719 CGGATAACAT
282729 GGAAAGACAA
1 GGAAAGACAA
*
282739 GG-AATACAA
1 GGAAAGACAA
282748 GGAAAGACAA
1 GGAAAGACAA
282758 GGAAAG
1 GGAAAG
282764 CGTGGGAGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
9 8 0.36
10 14 0.64
ACGTcount: A:0.57, C:0.09, G:0.31, T:0.03
Consensus pattern (10 bp):
GGAAAGACAA
Left flanking sequence: Indices 282229 -- 282728
TCTCACTAAGTAAAACGGCTTTTCTAGGTTTTGTAGCTAGGGCTAGATGGATTTCGTGTCAAAAG
AAAAACGAGTGAAAAGACCATTTCAAGCAAAAAAGACGGGGTTTTAGACTTTTTTCCAAAAAGCA
TGCCACTTCACTTCTTATTCACTTCCTCACTTTGTTTACTTCGTAACCTTTGGTATTGCGTCTCA
TCCAGGTGATTAATATCACGTCATAGCATTTCTTCCCCTGCTTCTGAAAGAAAAGAATCATATGA
CTTACCTAGGCGGTTGTACCACTTGAAAGGTGACATTGAAGAAGCTGAATCGAAACTTATACGAT
ATTGTAGAGAACCACTCTGAGTCTTTATTCCCCTAGTCTTCTTCGCATCCTTACTTACCTCCTTA
TACTACTGTAAGCATATGAAGGAATGGGTGAACGGGAAACCTGTTGTTAGGAGAACGGGAAACCT
GTTGTTAGGAGGACGGGGCCTGTTGCCAAGGAGAACGGATAACAT
Right flanking sequence: Indices 282764 -- 283001
CGTGGGAGTTGCCGGGGTAACCTCCCTCTCCGGTCGAGTAACCTTCTACCTCTCCTTGTTGCCGA
GGAATTCCATTCCTATTCAAATTCCCGGGAAAGTCGACTTTGTTCGATAGTTCCCATCTCTCGAT
CACCCCACAAGAGAAGCCACTCGAACGAATAGCTCCTTTCTTGCCGTGGAATTCCTCAAAGCTAT
AATATAAATGGAATTCTCCCTTGACTCGATCTTTAAAAAAATT
Done.