Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_065222
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 313022
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Found at i:33809 original size:11 final size:12
Alignment explanation
Indices: 33790--33815 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
33780 GTAACCGGTG
33790 AAATAAAAAAGA
1 AAATAAAAAAGA
33802 AAATAAAAAAGA
1 AAATAAAAAAGA
33814 AA
1 AA
33816 GAAATTTCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.85, C:0.00, G:0.08, T:0.08
Consensus pattern (12 bp):
AAATAAAAAAGA
Left flanking sequence: Indices 33290 -- 33789
TAAATGATGTTAGGATCGGCCGGCTCGTTCTCGGAATCCTAAAATAAAACAGAGACAGAACGGAT
TGTTTCAGTGACATATCTAATCAGACTGAATAGGATTTGAAGAGCTGTCACGATCATTCACATCA
ATTTCAGCAGGCAGGAAGGGCGCGGAAGCTACCGTTTCTAGAATGCAAGCAAGGTAGCTTGCTTA
CTCTCCTAGTAGCGTACGTTGGCGGCAAGGAAGGAGGCATTGGAAAGACTAGACCATACTAAAGT
AAAGAGGCATTCGGGAAGCTACTAGTCGCTTCTGGCGAAGCTTATAGAAGGCCGACCGCTACATA
GAGAGATCCATATACTATACCAGTCATGAGCGATAGCGAAGCCTAGAGAGGCGGAAGCAGTAGCT
TCTAGGACGAAGCCGAGCCGATAGTCGGGCGAAGGAAGCGAGACCAAGCCGAGCCACTAGTGGAG
TGGCGAAGGAGGCCTACTATACGTATACTGGATTAGTAACCGGTG
Right flanking sequence: Indices 33816 -- 34315
GAAATTTCAGTGAACTATTGAACAGTGTGATTGATCAGACAAGTACCAAGGGCTTTCGGTAGACT
TCTTTCATTTCCGAATTAGCTTGCGAAAAGTCCTTGCATTAGTATGAGTTCGTTGACCGCGTAAG
GGCAATCCATCTTGATGACGAATTCCACGATAACAAGAAATAGAAATTAATCGTTCGATGTCTGC
TCGTTCTCCCCTCTTCAATTCCCAATGAACAACATGATCTTGACCTATCATTTGTTCAATTTGGT
CGATCTGATACTTAGTTAACTCTTTTATCTTTATGTTCCCACTGATACCTAATCGATAACGAACC
TGAATGGCTTTTTTAGGTCCAATTCCATCAATTTTTGTTGAGGCAATTCTTACTTGTTCATCGGC
AACTGATCTAGCTCCTGAAATATATGACATTCTTGATCCTTCCTTTTACTAGTCTTCTCGGCTGG
AATCAAAAATGGGGTGTCTCCTCTCTGATGATCTTTTCTATAGGT
Found at i:59304 original size:6 final size:7
Alignment explanation
Indices: 59287--59314 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
59277 CGAATGTGAG
59287 AAAAAAT
1 AAAAAAT
59294 AAAAAAT
1 AAAAAAT
59301 AAAAAAT
1 AAAAAAT
59308 AAAAAAT
1 AAAAAAT
59315 TTAGGCTGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (7 bp):
AAAAAAT
Left flanking sequence: Indices 58787 -- 59286
AACGAAAATAAAAAAAAAAAAGATAGATAAATTTCTCTTGTGATTCGGACTGAACCTTTCTCGGT
GGAAGAAAGGAATAGCGATGGATTTCTATGGAGCATCCAGGAACAAGAAGATTCAATCGGACGGC
GAATTCTTACGTGGTCCAAGGAAATCAAAGGTCCGCTTCCACGATTTCATCTATATCGAATCTTA
ATATCAGAATAGCTTATATAGTCATGATTCACCACTGCACTTACTTTTGATTGATTTCTCATTTT
TCGGATCTGATTGGAACCGATGACTTACGCCTATTTCTTAGGGCGTTTAAAGAGCGTGACTCTAC
CGCTTAGTTAAAAGGGTCCATTTGATTCAATTCATGAATTAGCCCACTATGAGTTTACTGCATTT
TCATTTATAAATAAATTCTTATATATTTTTTTTATGATAATAATTTATAATATAGTATATCATTC
GTGTCTCTGTTACAACACGGCGAAACAAAATGGTTCGAATGTGAG
Right flanking sequence: Indices 59315 -- 59814
TTAGGCTGTACACCCTGGGATTGTAGTTCAATCGGTCAGAGCACCGCCCTGTCAAGGCGGAAGCT
GCGGGTTCGAGCCCCGTCAGTCCCGACCTAGGATCCGCTGAATCGATCAATTCATCTCTCCGGGC
AAAGAGTAGGATATAATTCCCAGCAGGAGGATCCTTCTTTTGTTTCGCATTTCTCATCGGACAAA
TCAAGTCAAGGAATAAAAATGAGAATAACTAGTACCGATTGATGGGGGAGAGTTACTATTACACA
AGAAGACTGATAAGATCTATTAAATATCTATATAATGCTTTTAACGTTCTTTCAGAACCTTAGCG
CAAGCACTAAGTAAGCAAGCTCCCTTTACTTGCCGGGTATCCCCCTTTCTATAGGACGAGCCATG
GGAACCCATGAGATTGATTGAACAAGCCTTAAAAGCGAAGAAGAATCATCGAACTGGAACGAAAC
GCAAGTACTAGAACTCTTGAACTAGAGGAAGGCTCGAGGAGCTTA
Found at i:72443 original size:5 final size:5
Alignment explanation
Indices: 72424--72475 Score: 56
Period size: 5 Copynumber: 10.8 Consensus size: 5
72414 CACCCCGGGG
* *
72424 TATAC TATA- TCATAC TATAC TATAC TATA- TATAC TATA- TTTAC TATAT
1 TATAC TATAC T-ATAC TATAC TATAC TATAC TATAC TATAC TATAC TATAC
72472 TATA
1 TATA
72476 TTAAGGATAT
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
4 8 0.20
5 31 0.77
6 1 0.03
ACGTcount: A:0.40, C:0.13, G:0.00, T:0.46
Consensus pattern (5 bp):
TATAC
Left flanking sequence: Indices 71924 -- 72423
AGCGATGGCAATTCTTGTTGCTAAGCGCTCCTGAATATTTGACTCTTGTACAATTTCTCCTCTAC
TATAGTCTCATTCTGAAAGTCTTTTCTTCATGCTGCAAGTTGACTTCACCCCCGGAGACCTGCCG
TCGTAACAGCACTTTGGGCGGAAACTACTCTGTTATCTTGCATTAGAGATGAAAAAGAGCTCTCG
CTTTTGACCATGGAGATATATACCTACGACATTAGATCATCGAATTTCTCACTAGATGGAAGAAG
CTGAAAGATGTTGAATGCTTTCTATCACTAATATGTCAATCCGTTATTGAATCATCAAAGTCAAG
AAGAAGTGATGGGCTCGATATCGATATCAGATCCATAAGCGTTAAGAAAATCCCGAATATGCTGA
CCCGGGTGCAGTAAACGAACTTATATTCTCTTTGCTTTCTTTCAGAAGCTAAGCGCTACAACCTA
TAGCTTTAAATGAACCTTTCTCACATCCTTTATTTCACCCCGGGG
Right flanking sequence: Indices 72476 -- 72975
TTAAGGATATATTATATTATATTATAAGATATATATAATACAAACGGGTCACCCTACGGGTACCC
CGCGGAAGCGGGCACTGGACCGAGCTGAGGCGAGAGGAAAAACCCTACCAACCCCTATCCAATGG
AAGAAGATACTTACAGAGAGTGAATGGATCACGGGTGTGGGACATGAACGTAGTCTTCATTCATT
ACATTGATTGTAAGACTAATTCTTATGCTAACAACCTAAGTAACAAGCCTTTTCGCGGATAGACT
TATGGAGTACAACTCGTGCTTTAAGCTTAAGACTCGTCTTATGAATGCCAAAAGGAACTATAAAG
GAGCGCTTAGCGACAAAAACAACTAATTCGCTGTAGGTTGAAGCGGCAACAACAAGATTAAATGC
CACAGGGCATAGCCACAAGAATTGACTACGGGATGCGAGGAAAAGTCATGATAATATGACTTGGT
AGCACGAGAAGAAAGATACGATGGAATTGAACGGGAATCCCCCTG
Found at i:72449 original size:20 final size:18
Alignment explanation
Indices: 72424--72471 Score: 69
Period size: 20 Copynumber: 2.6 Consensus size: 18
72414 CACCCCGGGG
72424 TATACTATATCATACTATA
1 TATACTATAT-ATACTATA
72443 CTATACTATATATACTATA
1 -TATACTATATATACTATA
*
72462 TTTACTATAT
1 TATACTATAT
72472 TATATTAAGG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
18 9 0.33
19 8 0.30
20 10 0.37
ACGTcount: A:0.40, C:0.15, G:0.00, T:0.46
Consensus pattern (18 bp):
TATACTATATATACTATA
Left flanking sequence: Indices 71924 -- 72423
AGCGATGGCAATTCTTGTTGCTAAGCGCTCCTGAATATTTGACTCTTGTACAATTTCTCCTCTAC
TATAGTCTCATTCTGAAAGTCTTTTCTTCATGCTGCAAGTTGACTTCACCCCCGGAGACCTGCCG
TCGTAACAGCACTTTGGGCGGAAACTACTCTGTTATCTTGCATTAGAGATGAAAAAGAGCTCTCG
CTTTTGACCATGGAGATATATACCTACGACATTAGATCATCGAATTTCTCACTAGATGGAAGAAG
CTGAAAGATGTTGAATGCTTTCTATCACTAATATGTCAATCCGTTATTGAATCATCAAAGTCAAG
AAGAAGTGATGGGCTCGATATCGATATCAGATCCATAAGCGTTAAGAAAATCCCGAATATGCTGA
CCCGGGTGCAGTAAACGAACTTATATTCTCTTTGCTTTCTTTCAGAAGCTAAGCGCTACAACCTA
TAGCTTTAAATGAACCTTTCTCACATCCTTTATTTCACCCCGGGG
Right flanking sequence: Indices 72472 -- 72971
TATATTAAGGATATATTATATTATATTATAAGATATATATAATACAAACGGGTCACCCTACGGGT
ACCCCGCGGAAGCGGGCACTGGACCGAGCTGAGGCGAGAGGAAAAACCCTACCAACCCCTATCCA
ATGGAAGAAGATACTTACAGAGAGTGAATGGATCACGGGTGTGGGACATGAACGTAGTCTTCATT
CATTACATTGATTGTAAGACTAATTCTTATGCTAACAACCTAAGTAACAAGCCTTTTCGCGGATA
GACTTATGGAGTACAACTCGTGCTTTAAGCTTAAGACTCGTCTTATGAATGCCAAAAGGAACTAT
AAAGGAGCGCTTAGCGACAAAAACAACTAATTCGCTGTAGGTTGAAGCGGCAACAACAAGATTAA
ATGCCACAGGGCATAGCCACAAGAATTGACTACGGGATGCGAGGAAAAGTCATGATAATATGACT
TGGTAGCACGAGAAGAAAGATACGATGGAATTGAACGGGAATCCC
Found at i:72458 original size:14 final size:14
Alignment explanation
Indices: 72424--72476 Score: 63
Period size: 14 Copynumber: 3.7 Consensus size: 14
72414 CACCCCGGGG
72424 TATACTATATCATAC
1 TATACTATAT-ATAC
72439 TATACTATACTATA-
1 TATACTATA-TATAC
*
72453 TATACTATATTTAC
1 TATACTATATATAC
*
72467 TATATTATAT
1 TATACTATAT
72477 TAAGGATATA
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
13 3 0.09
14 18 0.53
15 12 0.35
16 1 0.03
ACGTcount: A:0.40, C:0.13, G:0.00, T:0.47
Consensus pattern (14 bp):
TATACTATATATAC
Left flanking sequence: Indices 71924 -- 72423
AGCGATGGCAATTCTTGTTGCTAAGCGCTCCTGAATATTTGACTCTTGTACAATTTCTCCTCTAC
TATAGTCTCATTCTGAAAGTCTTTTCTTCATGCTGCAAGTTGACTTCACCCCCGGAGACCTGCCG
TCGTAACAGCACTTTGGGCGGAAACTACTCTGTTATCTTGCATTAGAGATGAAAAAGAGCTCTCG
CTTTTGACCATGGAGATATATACCTACGACATTAGATCATCGAATTTCTCACTAGATGGAAGAAG
CTGAAAGATGTTGAATGCTTTCTATCACTAATATGTCAATCCGTTATTGAATCATCAAAGTCAAG
AAGAAGTGATGGGCTCGATATCGATATCAGATCCATAAGCGTTAAGAAAATCCCGAATATGCTGA
CCCGGGTGCAGTAAACGAACTTATATTCTCTTTGCTTTCTTTCAGAAGCTAAGCGCTACAACCTA
TAGCTTTAAATGAACCTTTCTCACATCCTTTATTTCACCCCGGGG
Right flanking sequence: Indices 72477 -- 72976
TAAGGATATATTATATTATATTATAAGATATATATAATACAAACGGGTCACCCTACGGGTACCCC
GCGGAAGCGGGCACTGGACCGAGCTGAGGCGAGAGGAAAAACCCTACCAACCCCTATCCAATGGA
AGAAGATACTTACAGAGAGTGAATGGATCACGGGTGTGGGACATGAACGTAGTCTTCATTCATTA
CATTGATTGTAAGACTAATTCTTATGCTAACAACCTAAGTAACAAGCCTTTTCGCGGATAGACTT
ATGGAGTACAACTCGTGCTTTAAGCTTAAGACTCGTCTTATGAATGCCAAAAGGAACTATAAAGG
AGCGCTTAGCGACAAAAACAACTAATTCGCTGTAGGTTGAAGCGGCAACAACAAGATTAAATGCC
ACAGGGCATAGCCACAAGAATTGACTACGGGATGCGAGGAAAAGTCATGATAATATGACTTGGTA
GCACGAGAAGAAAGATACGATGGAATTGAACGGGAATCCCCCTGT
Found at i:72472 original size:9 final size:9
Alignment explanation
Indices: 72424--72471 Score: 69
Period size: 9 Copynumber: 5.1 Consensus size: 9
72414 CACCCCGGGG
72424 TATACTATA
1 TATACTATA
72433 TCATACTATA
1 T-ATACTATA
72443 CTATACTATA
1 -TATACTATA
72453 TATACTATA
1 TATACTATA
*
72462 TTTACTATA
1 TATACTATA
72471 T
1 T
72472 TATATTAAGG
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
9 19 0.53
10 16 0.44
11 1 0.03
ACGTcount: A:0.40, C:0.15, G:0.00, T:0.46
Consensus pattern (9 bp):
TATACTATA
Left flanking sequence: Indices 71924 -- 72423
AGCGATGGCAATTCTTGTTGCTAAGCGCTCCTGAATATTTGACTCTTGTACAATTTCTCCTCTAC
TATAGTCTCATTCTGAAAGTCTTTTCTTCATGCTGCAAGTTGACTTCACCCCCGGAGACCTGCCG
TCGTAACAGCACTTTGGGCGGAAACTACTCTGTTATCTTGCATTAGAGATGAAAAAGAGCTCTCG
CTTTTGACCATGGAGATATATACCTACGACATTAGATCATCGAATTTCTCACTAGATGGAAGAAG
CTGAAAGATGTTGAATGCTTTCTATCACTAATATGTCAATCCGTTATTGAATCATCAAAGTCAAG
AAGAAGTGATGGGCTCGATATCGATATCAGATCCATAAGCGTTAAGAAAATCCCGAATATGCTGA
CCCGGGTGCAGTAAACGAACTTATATTCTCTTTGCTTTCTTTCAGAAGCTAAGCGCTACAACCTA
TAGCTTTAAATGAACCTTTCTCACATCCTTTATTTCACCCCGGGG
Right flanking sequence: Indices 72472 -- 72971
TATATTAAGGATATATTATATTATATTATAAGATATATATAATACAAACGGGTCACCCTACGGGT
ACCCCGCGGAAGCGGGCACTGGACCGAGCTGAGGCGAGAGGAAAAACCCTACCAACCCCTATCCA
ATGGAAGAAGATACTTACAGAGAGTGAATGGATCACGGGTGTGGGACATGAACGTAGTCTTCATT
CATTACATTGATTGTAAGACTAATTCTTATGCTAACAACCTAAGTAACAAGCCTTTTCGCGGATA
GACTTATGGAGTACAACTCGTGCTTTAAGCTTAAGACTCGTCTTATGAATGCCAAAAGGAACTAT
AAAGGAGCGCTTAGCGACAAAAACAACTAATTCGCTGTAGGTTGAAGCGGCAACAACAAGATTAA
ATGCCACAGGGCATAGCCACAAGAATTGACTACGGGATGCGAGGAAAAGTCATGATAATATGACT
TGGTAGCACGAGAAGAAAGATACGATGGAATTGAACGGGAATCCC
Found at i:72491 original size:21 final size:22
Alignment explanation
Indices: 72467--72509 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
72457 CTATATTTAC
*
72467 TATATTATATTA-AGGATATAT
1 TATATTATATTATAAGATATAT
72488 TATATTATATTATAAGATATAT
1 TATATTATATTATAAGATATAT
72510 ATAATACAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 12 0.60
22 8 0.40
ACGTcount: A:0.44, C:0.00, G:0.07, T:0.49
Consensus pattern (22 bp):
TATATTATATTATAAGATATAT
Left flanking sequence: Indices 71967 -- 72466
TCTTGTACAATTTCTCCTCTACTATAGTCTCATTCTGAAAGTCTTTTCTTCATGCTGCAAGTTGA
CTTCACCCCCGGAGACCTGCCGTCGTAACAGCACTTTGGGCGGAAACTACTCTGTTATCTTGCAT
TAGAGATGAAAAAGAGCTCTCGCTTTTGACCATGGAGATATATACCTACGACATTAGATCATCGA
ATTTCTCACTAGATGGAAGAAGCTGAAAGATGTTGAATGCTTTCTATCACTAATATGTCAATCCG
TTATTGAATCATCAAAGTCAAGAAGAAGTGATGGGCTCGATATCGATATCAGATCCATAAGCGTT
AAGAAAATCCCGAATATGCTGACCCGGGTGCAGTAAACGAACTTATATTCTCTTTGCTTTCTTTC
AGAAGCTAAGCGCTACAACCTATAGCTTTAAATGAACCTTTCTCACATCCTTTATTTCACCCCGG
GGTATACTATATCATACTATACTATACTATATATACTATATTTAC
Right flanking sequence: Indices 72510 -- 73009
ATAATACAAACGGGTCACCCTACGGGTACCCCGCGGAAGCGGGCACTGGACCGAGCTGAGGCGAG
AGGAAAAACCCTACCAACCCCTATCCAATGGAAGAAGATACTTACAGAGAGTGAATGGATCACGG
GTGTGGGACATGAACGTAGTCTTCATTCATTACATTGATTGTAAGACTAATTCTTATGCTAACAA
CCTAAGTAACAAGCCTTTTCGCGGATAGACTTATGGAGTACAACTCGTGCTTTAAGCTTAAGACT
CGTCTTATGAATGCCAAAAGGAACTATAAAGGAGCGCTTAGCGACAAAAACAACTAATTCGCTGT
AGGTTGAAGCGGCAACAACAAGATTAAATGCCACAGGGCATAGCCACAAGAATTGACTACGGGAT
GCGAGGAAAAGTCATGATAATATGACTTGGTAGCACGAGAAGAAAGATACGATGGAATTGAACGG
GAATCCCCCTGTTCTTCAACAACTGGTGCAGAAGTTAACAACAAC
Found at i:80472 original size:31 final size:29
Alignment explanation
Indices: 80419--80494 Score: 73
Period size: 31 Copynumber: 2.5 Consensus size: 29
80409 GTTGGAAAAA
* *
80419 AAGTAAAACTCCCTCTCCCTAAC-AGTCGAGT
1 AAGT-AAACTCCCT-TCCCTAACAAGT-AAGC
*
80450 AAGTGAAACTCCCTTACTCTAACAAGTAAGC
1 AAGT-AAACTCCCTT-CCCTAACAAGTAAGC
80481 AAGTAAACTCCCTT
1 AAGTAAACTCCCTT
80495 TGAATCTTAT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
30 11 0.28
31 25 0.64
32 3 0.08
ACGTcount: A:0.36, C:0.29, G:0.12, T:0.24
Consensus pattern (29 bp):
AAGTAAACTCCCTTCCCTAACAAGTAAGC
Left flanking sequence: Indices 79919 -- 80418
ACTTTAGGAGAGTCATATTTTCTGGTACGTCCATCTACTTATAAGCGGCCGGCTATGTTCTCTAA
ACTCATCTATTTCCTCTCGGCTCTCAGCGCAACGAGAAAGGATTCCCCAATAGCTGAGATTGGTA
CTAGAATTCGCGAATCTAGAGAGCACCAACGATGTTGACCGGGAGGGAAAGGAGCAATTAAAGCC
TTTCATCTCAATCAAATGACCGAAATGGAGACTCTATTCTTGTTGGCAAATGCAAATACGAATCC
ACTGATTTCCATCCCCATGTTCTCTGAGCAATGACCTTTGTTTCCAACAGTAATGGAGATTTGTT
GCAAACTGTCTCCGAATCCCGTGCTTTTCAAGTAAGCACTAACTCCTGTGATGTGTATTCCCCTC
CAGAGTCTGTCCTCAAACATGGCTTTCTTTGCCTTGACTTTATAAGTTTCATTCTCCACTAAGCT
TCTGAACTCTATGAATTTTTGAAAGATTTCGGACCGTTGGAAAAA
Right flanking sequence: Indices 80495 -- 80994
TGAATCTTATCCATTGAAGAAGACAGACTTCAAGACTGAAACCCGCCCTTTATTATTATATTATT
AGTAAGATAGGTTTGGAACTCGGGCTATAGTTATACTATATGCCCGGGCTTTTCTCGCTTGTTGC
TTTCTTTCTTCGCATGCTTTCGCGCATTTTTTAAAAATTTTTCTTCTGGGGCGAACTCCCTATCT
TGATCGAAGTCCTGAAAGGCTTGGTTATGGTAGTCCCTCGGTCTATAAGATGTAGGCTTATCAAG
CTGAGGGAATTGCATAGTCAAGAGGAACTAAGTGCTGGTGATCGGAGCGTGGGGAACTCAGGCCG
CTGGTAGTAGAGGCAATGCAATTGAACCAATTTCCTTACACTCTAGCTGAGGGAGAGACTTTACC
TTTACTTAGAGAGGGGCAGCAATACTACTATGCTCTTCGGTGCTCGTAGGTTGACTTCCCTTATG
CACCCAGCCGCTTCACTAATGTGAATAGGTTATACAGAAGGGTGA
Found at i:83054 original size:39 final size:39
Alignment explanation
Indices: 83011--83089 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
83001 CGATTTTCTA
* *
83011 TTCACTCATGATCTGGCCTGGTCGACTCGATCATGATAT
1 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
83050 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
1 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
83089 T
1 T
83090 GAAGGATGGG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.22, C:0.27, G:0.19, T:0.33
Consensus pattern (39 bp):
TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
Left flanking sequence: Indices 82511 -- 83010
GCCCACACCTGTGTAGAGTAGATCGTTCAACACCTGCGGCACAAACCTATTTTTGACCTATTGGT
CCTAGTATCATAGGCGACCGAACGGCCGCCCCCTAATTACTAGACCAACCTGCTATAATAATTCC
ATAAACACCTAGCGAAGATATGGCAAACAAATAAAGTAGCCCTATGTTCGAATCTGACAATACCA
TACCATAATCAAAAGGTACAACGGCCCGAGCAACCAGACTTAACATAAATGTAGTCACTGGAGCC
ATTCTAAAAAGGGAGAAATTAGCACTACTTGGTGAAATAGGTTCTTTTAGAATCAATTTCAAACC
ATCCGCTAGAGGTTGTAACAATCCGAACGCTCCCACTACATCAGGACCCTTTCGACGTTGCACAA
AAGCCATTACTTTACGTTCAGCTAGCACTAAAAAGGCTACTCCTAGTAGAAGTGGTAGAATTATT
CCAAGTATTTCGGCTGGAACAGCTATGTACGTTTTCGATTTTCTA
Right flanking sequence: Indices 83090 -- 83589
GAAGGATGGGACCTTTTCTCGAAAAACTCCGGATCGAGTTGAAGGTGGTGCAACATCGAATCTTG
TTACCTTACTTCGAATGGAATCTTAGCCCGCCTCACTTGCTTTCTGTACTGCATAAGGTTCTGAA
AGAAAGTAAAGGGATTTCCTTCTAACTAGTGGCTGAGAGTAAGCAAGCTACCTTCATTCAACAGA
TTTGTGGTTGAGTCAATAAGGGTCGGGAATCTTTGCTCTTCTCTTTTGCATTTCCGCTGCCTGCG
TTCTTCTTCGTGTCCGTACGTATCGCAAAGCTGGTCGACGCCAGCTGTAATGGTTCATTTCGGGA
GTTTGAACACCATCCCAAAAATACAACCCTGTCAAAGGTATTTAACCTTCCTTCCTTCTGAGTGG
AAATCCAATCCCGTTTTGTCTTTTTTGCATAAAAACCAAACTAATAATATATATATATATTTCTT
TTAAACCCGTTCTTCCGACCCCTCCAAAAATGACCTTCTCCAGTG
Found at i:154486 original size:10 final size:10
Alignment explanation
Indices: 154471--154505 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
154461 AACTCCCACG
154471 CTTTCCTTGT
1 CTTTCCTTGT
154481 CTTTCCTTGT
1 CTTTCCTTGT
*
154491 -ATTCCTTGT
1 CTTTCCTTGT
154500 CTTTCC
1 CTTTCC
154506 ATGTTATCCG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
9 8 0.36
10 14 0.64
ACGTcount: A:0.03, C:0.31, G:0.09, T:0.57
Consensus pattern (10 bp):
CTTTCCTTGT
Left flanking sequence: Indices 153971 -- 154470
CTCCTTCTTTAATAGCGGTATCACTACCAAAGACAACAATCCCTACATTCTCATTCTCAAGATTC
AACGCTATTCCTTTCACACCGCTGGCAAATTCAACCATTTCCCCAGCTTGAATCTCATTCAATCC
ATAAACACGTGCAATCCCATCTCCAACTGAGACCACTCGACCGATCTCATCCACTTGAAAATTCG
TGTAAAAGTTGGTAATTCTACTTTCTAATAGAGTCGTTAGTTCCGCAGCTCTTGTAGAGAATTCC
ATAATTTTTTTAAAGATCGAGTCAAGGGAGAATTCCATTTATATTATAGCTTTGAGGAATTCCAC
GGCAAGAAAGGAGCTATTCGTTCGAGTGGCTTCTCTTGTGGGGTGATCGAGAGATGGGAACTATC
GAACAAAGTCGACTTTCCCGGGAATTTTTATAGGAATTCCATTCCTCGGCAACAAGGAGAGGTAG
AAGGTTACTCGACCGGAGAGGGAGGTTACCCCGGCAACTCCCACG
Right flanking sequence: Indices 154506 -- 155005
ATGTTATCCGTTCTCCTTGGCAACAGGCTCCGTCCTCCTAACAACAGGTTTCCCGTTCTCCTAAC
AACAGGTTTCCCGTTCACCCATTCCTTCATATGCTTACAGTAGTATAAGGAGGTAAGTAAGGATG
CGAAGAAGACTAGGGGAATAAAGACTCAGAGTGGTTCTCTACAATATCGTATAAGTTTCGATTCA
GCTTCTTCAATGTCACCTTTCAAGTGGTACAACCGCCTAGGTAAGTCATATGATTCTTTTCTTTC
AGAAGCAGGGGAAGAAATGCTATGACGTGATATTAATCACCTGGATGAGACGCAATACCAAAGGT
TACGAAGTAAACAAAGTGAGGAAGTGAATAAGAAGTGAAGTGGCATGCTTTTTGGAAAAAAGTCT
AAAACCCCGTCTTTTTTGCTTGAAATGGTCTTTTCACTCGTTTTTCTTTTGACACGAAATCCATC
TAGCCCTAGCTACAAAACCTAGAAAAGCCGTTTTACTTAGTGAGA
Found at i:154566 original size:23 final size:23
Alignment explanation
Indices: 154535--154586 Score: 95
Period size: 23 Copynumber: 2.3 Consensus size: 23
154525 GCAACAGGCT
*
154535 CCGTCCTCCTAACAACAGGTTTC
1 CCGTTCTCCTAACAACAGGTTTC
154558 CCGTTCTCCTAACAACAGGTTTC
1 CCGTTCTCCTAACAACAGGTTTC
154581 CCGTTC
1 CCGTTC
154587 ACCCATTCCT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.19, C:0.38, G:0.13, T:0.29
Consensus pattern (23 bp):
CCGTTCTCCTAACAACAGGTTTC
Left flanking sequence: Indices 154035 -- 154534
CAACGCTATTCCTTTCACACCGCTGGCAAATTCAACCATTTCCCCAGCTTGAATCTCATTCAATC
CATAAACACGTGCAATCCCATCTCCAACTGAGACCACTCGACCGATCTCATCCACTTGAAAATTC
GTGTAAAAGTTGGTAATTCTACTTTCTAATAGAGTCGTTAGTTCCGCAGCTCTTGTAGAGAATTC
CATAATTTTTTTAAAGATCGAGTCAAGGGAGAATTCCATTTATATTATAGCTTTGAGGAATTCCA
CGGCAAGAAAGGAGCTATTCGTTCGAGTGGCTTCTCTTGTGGGGTGATCGAGAGATGGGAACTAT
CGAACAAAGTCGACTTTCCCGGGAATTTTTATAGGAATTCCATTCCTCGGCAACAAGGAGAGGTA
GAAGGTTACTCGACCGGAGAGGGAGGTTACCCCGGCAACTCCCACGCTTTCCTTGTCTTTCCTTG
TATTCCTTGTCTTTCCATGTTATCCGTTCTCCTTGGCAACAGGCT
Right flanking sequence: Indices 154587 -- 155086
ACCCATTCCTTCATATGCTTACAGTAGTATAAGGAGGTAAGTAAGGATGCGAAGAAGACTAGGGG
AATAAAGACTCAGAGTGGTTCTCTACAATATCGTATAAGTTTCGATTCAGCTTCTTCAATGTCAC
CTTTCAAGTGGTACAACCGCCTAGGTAAGTCATATGATTCTTTTCTTTCAGAAGCAGGGGAAGAA
ATGCTATGACGTGATATTAATCACCTGGATGAGACGCAATACCAAAGGTTACGAAGTAAACAAAG
TGAGGAAGTGAATAAGAAGTGAAGTGGCATGCTTTTTGGAAAAAAGTCTAAAACCCCGTCTTTTT
TGCTTGAAATGGTCTTTTCACTCGTTTTTCTTTTGACACGAAATCCATCTAGCCCTAGCTACAAA
ACCTAGAAAAGCCGTTTTACTTAGTGAGAGCGTTCCTTTTTTGATCAATTTGACCCTTCACCTAC
ATGCAAAACCACGTGTTTTTTACGTTGTTATTGGTTTTAAATAAC
Found at i:161323 original size:18 final size:18
Alignment explanation
Indices: 161300--161342 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
161290 AAACCTTGTT
161300 GACTATGACAACAG-TCGC
1 GACTATGA-AACAGATCGC
161318 GACTAT-AAACAGACTCGC
1 GACTATGAAACAGA-TCGC
161336 GACTATG
1 GACTATG
161343 GCAGGGCGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.35, C:0.26, G:0.21, T:0.19
Consensus pattern (18 bp):
GACTATGAAACAGATCGC
Left flanking sequence: Indices 160800 -- 161299
TACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGA
GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTAC
CTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATAACACTTCT
CCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGT
CCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATAGGA
GAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAG
CGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTCACCGGGAGGAT
CGCCCTCCCAATTCGAAGTTTTTTCCTGGAAGTTTAAACCTTGTT
Right flanking sequence: Indices 161343 -- 161842
GCAGGGCGGTACGCTCTGCTCTCTCGCGACCCCTACTCTAATCAAAAGAGTAAAGGCCCCTTAGG
TCGCCAAACTACGACGAGAGTTTCGTCTTTTGAAGCGCCAGTCGCGTAGGGCGACCGGGCCAGGC
CGAGTCAGAAAGGCTTTGATGACTCAAGGTTCATATTAGGGAAAGGAGAGTGAGGGGAAGAGGGG
GCTGCCCTCGGCCCGATCATTCAATTCGCTCCAACAGACAGGCATGGTTCTGTAGTCAAAGCAAC
TTCGTCACTTTCGTGTACCCATCGGACGGCAGCCCTTTCGGGGGTTCCTTAGGGACCGATTCACT
CTGCGTAGATTGACTGAACGCAGAAAGCCTTCCACTGGCAGGCGATCGTGTTTTTCACAGGATTT
TTCGTTACTCATGTCAGCATTCTCACTTCTGATATCTCCAGGTGTTGTCACCAAAAACCTTCCCC
GATTGACAGAACGTTCCGCTACTGACACTTGAAAAAAAAGCTTTC
Found at i:173358 original size:18 final size:18
Alignment explanation
Indices: 173335--173371 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
173325 GGTTTTCTTG
173335 TTGATGATAGTGACGATA
1 TTGATGATAGTGACGATA
173353 TTGATGATAGTGACGATA
1 TTGATGATAGTGACGATA
173371 T
1 T
173372 CGGCCGTGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.05, G:0.27, T:0.35
Consensus pattern (18 bp):
TTGATGATAGTGACGATA
Left flanking sequence: Indices 172835 -- 173334
CTCGAACAGTGATTCGATTGGTGATAAAGAAAGAGAATTCTTGGTTCAGTTCTCCACCTTAACGA
CAGAAAAAAGGATTGATCAAATTCTATTGAGTCTGACTCATAGTGATCATTTATCAAAGAATGAC
TCTGGTTATCAAATGATTGAACAACCGGGAGCAATTTACTTACGATACTTAGTTGACATTCATAA
AAAGTATCTAATGAATTATGAGTTCAATACATCCTGTTTAGCAGAAAGGCGGATATTCCTTGCTC
ATTATCAGACAATCACTTATTCACAAACCTCCTGTGGGGCTAATAGTTTTCATTTCCCATCTCAT
GGAAAACCCTTTTCGCTCCGTTTAGCCCTATCCCTCTCTAGGGGTATTTTAGTGATAGGTTCTAT
AGGAACTGGACGATCCTATTTGGTCAAATACCTAGCGACAAACTCCTATGTTCCTTTCATTACAG
TATTTCTGAACAAGTTCCTGGATAACAAGCCCAAGGGTTTTCTTG
Right flanking sequence: Indices 173372 -- 173871
CGGCCGTGACCTTGATACGGAGCTGGAGCTTCTAACTATGATGAATGCGCTAACTATGGATATGA
TGCCGGAAATAGACCTATTTTATATCACCCTTCAATTCGAATTAGCAAAAGCAATGTCTCCTTGC
ATAATATGGATTCCAAACATTCATGATCTGGATGTGAATGAGTCGAATTACTTATCCCTCGGTTT
ATTAGTGAACTATCTCTCCAGGGATTGTGAAAGATGTTCCACTAGAAATATTCTTGTTATTGCTT
CGACTCATATTCCCCAAAAAGTGGATCCCGCTCTAATAGCTCCGAATAAATTAAATACATGCATT
AAGATACGAAGGCTTCTTATTCCACAACAACGAAAGCACTTTTTCACTCTTTCATATACTAGGGG
ATTTCACTTGGAAAAGAAAATGTTCTATACTAATGGATTCGGGTCCATAACCATGGGTTCCAATG
TACGAGATCTTGTAGCACTTACCGATGAGGCCCTATCGATTAGTA
Found at i:210954 original size:33 final size:33
Alignment explanation
Indices: 210912--210991 Score: 160
Period size: 33 Copynumber: 2.4 Consensus size: 33
210902 CCTTAACAAG
210912 TAAGCAAGTAAACTCCCATATATATATAATATA
1 TAAGCAAGTAAACTCCCATATATATATAATATA
210945 TAAGCAAGTAAACTCCCATATATATATAATATA
1 TAAGCAAGTAAACTCCCATATATATATAATATA
210978 TAAGCAAGTAAACT
1 TAAGCAAGTAAACT
210992 ACCTTACTCT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 47 1.00
ACGTcount: A:0.49, C:0.15, G:0.07, T:0.29
Consensus pattern (33 bp):
TAAGCAAGTAAACTCCCATATATATATAATATA
Left flanking sequence: Indices 210412 -- 210911
GGTGGGCTCGTAATCTGATGCGGGAAGTTGTTGGATTGGTGTCAATACGGATTGGTGGATAGATC
GTCTCGTTCGACTGGTTGTGCGATGTATGGATTCTGTCTTGATGTTCCTTGGCGGCGGCTAAGAT
GCCGATTTCGGTTCTGCATCAATGGTAGAGGCCGTGGAGTAAACAAGGACTGCGGCTGAAGTGAA
GGCTGAGAAGAGTTCTGCTACCGATCCAGATGGTGGGCGTGAAGGTGGGTTTATCTAGGTAGGCT
CGACCTTCGTACGAGACTAAAGTAGTGAGGAGCGCGATGTAAGGGCGGTAGGGTAAGGTAATTAC
GCCAGAAGTGGAGGCGGGCTTAATGTCCCGTTCAGACGATGTAGAAGTGGACATAATGTAGTTCA
GAAAGCTTCAAATAATGTACATCTACCCGTATAAGGTAAACTATCCTAAAGGCGTGAAGTAAGCG
AAAGTGTCTTCCTTATAATCTAAGCAAGTAAACTACCTTAACAAG
Right flanking sequence: Indices 210992 -- 211491
ACCTTACTCTTCTAACCCGGGAAAGAGAGTAATGCTGAGAGGTAGCTTGTCAAAAGATATCTAGC
TCGCAAGGCTTTAAGGAGGGACGGGAATAGACTGATTCAAGAGAGTCAACTGATTCAATAGGTCC
GAGAATCTATTTCATTGAGCAGGAAACCGAAGCTAACCACTGCCCCACCGCCTCTTAGATAGAAT
GACCTTAAGGCACGAGGGAGCTTGCCCTTGATAGCGCCCTTATATTCTATATAAGCAAGTTTACT
ACCTTCCCGGCTCACGTACTTAAGTGAGATTTGAATCTCGTTCCTGGGCGTTTTTTGCTAACTAG
TAGGTTCCCAACTCACAAGGAAGGGATTTATGCGCATATTCGAGTTCGTATGTCGATTCTACGGT
GAAACACAAAAACCTTAGTTAGACACCTTCGTAAAGGTACACGAAGGGCTTGAAACAACGATTTC
TCTGATACAATCCTTTCTTACAATCTTGACTGGTTGGTTGTTGCT
Found at i:247325 original size:15 final size:15
Alignment explanation
Indices: 247305--247339 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
247295 AAGAGGATTG
247305 CTAGCTAGAAAGCTC
1 CTAGCTAGAAAGCTC
*
247320 CTAGCTAGAGAGCTC
1 CTAGCTAGAAAGCTC
247335 CTAGC
1 CTAGC
247340 GGTCAGAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.20
Consensus pattern (15 bp):
CTAGCTAGAAAGCTC
Left flanking sequence: Indices 246805 -- 247304
AACGTAAGGGCTTTGAAGCCCCTTTTCTCCTGTCTAAGCTCAGGTGCACTTAAAGGACTGTTGCT
TCCTCTTATGCTTCCGCTGACGACGGCGGATCTTGACTCAACTACACGGGGGCCTTGGCTTTCTC
TTTCACAGGTCCGGTCAAGGAACCTCCTTCCGTTAGTTAAGGAGTGCTCCTTTATTCGTTATCTT
TGATTTCGAGTGTGTAAGAAGCTCTTTCCTAGGACATCGCTGCAATCATTTCATAGATGTATCTA
TTTCTTTGAGTGTAGTATGTCTGGCAGGAGCCCTGAATGTCTCTCTTGTAGCTGGTGTATTCCGT
TGTACTGGTAGTCTTTCTTTCTGCTTTATGACCTATTAGGAGGATGCTTTAAGCAATCTCTTCTC
AAAGGGATTAGGTAAAATAGGCGGAGACATTCGGTCAGTACTTAGCTCTTTCATCTTTCCTTTTA
TAGTCGAGCTTCGAAAGCTGTCATGTAAGAAACCAAAGAGGATTG
Right flanking sequence: Indices 247340 -- 247839
GGTCAGAATTCAATCTTTGGAAAGTCGTTGCCTCTTAGTAGCTAAGGTGAAGCCTGGGACTTTGA
AAGCACTTTCTTCATCTGCTCCATCTATTTACTTAGCTGACAATCGTATAGTATAGAGTGTGATA
CCGGAAGCAGACTCCCATCTATAGTAAAAGAGAAGAAAGTCAGGCGGACACTGGCAGCTGCAAGT
CAGTCGGTTGGCTTCCGGTACTAGAGCAGTCGCTCTTTCTTTCGCCAGCGAGCGGAGAAGACCAT
AGGCCATAAACGAACTGGAGAGGCTGAAAGATGGCGGGGGGATTGGTGGTTGGTCGAGGCGCCTG
GGTAAGCGACACAATCTTACCTAGTGAAGGGGAAGTACGGAGGGACAGGGGCTATGAAAGCATTC
TTGGGGAACTAAGTGACTCTTTGCCCTATGGTAGTAGGTACTCTTCACGGGGTGTAGTCTGCGGG
CGTAAGCGGTAACTAGACCTCACAGGAACGAGTGGAATACTTGGT
Found at i:257172 original size:24 final size:24
Alignment explanation
Indices: 257145--257192 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
257135 ACCTTCCTTA
257145 TCCAACAAGCAGGAACCATACAAG
1 TCCAACAAGCAGGAACCATACAAG
257169 TCCAACAAGCAGGAACCATACAAG
1 TCCAACAAGCAGGAACCATACAAG
257193 AAGACTGATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.46, C:0.29, G:0.17, T:0.08
Consensus pattern (24 bp):
TCCAACAAGCAGGAACCATACAAG
Left flanking sequence: Indices 256645 -- 257144
CATTCCCGATGCACTCGGCAAGCCTCCAATTCCCACAGTCACATTCGGCCGCCTCCTCCGGTCGC
TACATCAGCTACTCCAGAGATGATCTCGATAGCGAAATTGGGAGTGGTGACTTTATGAACTACAC
GGCCTCCGACACCAGCCAATGGATCCATCCATTTCGCAGAAGGTTGAAGAGCAGTATGTGTCCAA
TTCGCTCTTCACTGGGGGATTCAACAGTCTTACCCGAGCTCATCTTATGGACAAGGTGATTGAAT
CCGAAGCCAACCATCCTCAGATGGCGTCAAAGGGTCATCATGTGCCATTCCTGGGTGTGATGCAA
AGGTGATGAGCGATCAACGCGGGGAGGACATTCTACCTTGTGGGTGTGATAAGGAGTAGGTGAGG
ACTCACTGACCTGAGCGATTTCGATTCAATCTTTGTCGAGATTGTTATACTGATGCTGTCAAAAC
AGGGGGTGGTAGCATGTCCTTTAGCAACGCTAGCCACCTTCCTTA
Right flanking sequence: Indices 257193 -- 257692
AAGACTGATTTGGATGAAATGGCTATGGAGAGTGCATTGCCTCCGCTTCCCCTGCCTCTGCCTAA
TGGGATGTCTAAAATGGAGAGGAGGTTGTCACTCATGAAGTCAACAAAGTAGGTCCTGATGAGGA
GTCAAACTGGCGATTTGGATCACGGCTCTTTGAAACCAAGGGAACTTATGGCTATGGGAATGCTA
TATGGTCCAAGGTTTCGGTTTAGGAAATGGAAAAGACTACGATGTCGTTGAACCAACTGAGCTGA
TGAACAAACCATGGAGGCCTCTCACCCGGAAACTAAAGATACCTGCAGCTATTCTGAGTACCTAT
AGGTACATCTCTTGCAGTATTTTGTCCCCGCACCTTAACATGGATTATGGAAATCTCATAACAAG
TGAGTCTCCCTATAGCTAGGTATAGCGATATGCTAGTTTCCTATATACACTTACACTTAAAATGA
TTGAAAGACCACCATCCATTATGTTTTTGTCATTGAGATGCATCT
Found at i:265165 original size:30 final size:30
Alignment explanation
Indices: 265131--265264 Score: 160
Period size: 30 Copynumber: 4.8 Consensus size: 30
265121 CGCTACCCGC
*
265131 AAATCCACGTAATGAACAACTAAAACAGGT
1 AAATCCAGGTAATGAACAACTAAAACAGGT
* *
265161 AAATCCAGGTAATGAACAACTAAGACCGGT
1 AAATCCAGGTAATGAACAACTAAAACAGGT
265191 AAATCCAGGTAATG---------AACAGGT
1 AAATCCAGGTAATGAACAACTAAAACAGGT
* *
265212 AAATCCAGGTAATGAACAACTAAGACCGGT
1 AAATCCAGGTAATGAACAACTAAAACAGGT
265242 AAATCCAGGTAATGAACAACTAA
1 AAATCCAGGTAATGAACAACTAA
265265 GACCAGCTAA
Statistics
Matches: 88, Mismatches: 7, Indels: 18
0.78 0.06 0.16
Matches are distributed among these distances:
21 19 0.22
30 69 0.78
ACGTcount: A:0.46, C:0.19, G:0.18, T:0.17
Consensus pattern (30 bp):
AAATCCAGGTAATGAACAACTAAAACAGGT
Left flanking sequence: Indices 264631 -- 265130
GATTCAATTTGTTGCATAAATGTATTATACGTCACGCGTAAACCAAATGAGGTGGGAATGTGAAT
ATACAGCGACGTCAAATAAGTATGAAGTAAAAGACCTAGTCCATTCATCACGAGCATATCTCTTG
GTTTAGCTATGAAAAATACAGCACTCATTGGATTATATGTTTCCTTATTGTAGTCATAACAACTA
AACCTTTCCAGTTCACCATTCTGATTCACGATGTGGAGATAAAGCGGAGAGAAAATAAAAGAACC
ATTTTCGATTTCTTTTTTTATTGAACTAATCTCATCTACTGACACTTTCTTATATAGATCTCTAA
TATTATCTGCTGACGATCTCTTAATAAATAGATCTCCTAAATAGCATAACAAAAGATCAATACTT
TTTAATAGAGAACCCCGATCCAGAACTATGGAATTGGGGTTTGTTTCATCAAGTAGAAAGTGCAT
ATCTTCTCTATCGAGATATTTATTCGTATTACTACCGCTACCCGC
Right flanking sequence: Indices 265265 -- 265764
GACCAGCTAAAACCCGTACTGAACGACGAGCAAGATTAAAATGTGAGTTTAGTACGTATTTAGGA
GACAACATAGGTTTAATTCTGTTTGTATACGAATACTAGGTGTATCGCTTAGACTGCATAACTCA
TAAGTGAGATGGATTGAGTGATACGAACACCCTCACCATCTCACCACCCTGGCGGCTATTACCGT
GGTAGGGATTTCCCCTACCTTTAACTCCCCCATAGAAATAAGCGGTTAAAATCTGACCATTACAC
TACCTACAAATGAGGCGTGTAACTTACCTACTTGGGAGAGACAAGCCTCTAATCTGGATTTCACC
AGGGTTAGTAGAGATAAATGAACCCATACCCAAGGGGGTCCGGGTTTTATCTCTATAGGCTCTCC
AATAGAGTATACATATTTTTTCTTACTCTTATTCTTTCTTTTTAGAATAAAATATAGGAAGGAGA
TTTTACTTCTTAGAAGGAGATGACTAGATCTTTGTATTTACTGGT
Found at i:265214 original size:21 final size:21
Alignment explanation
Indices: 265188--265229 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
265178 AACTAAGACC
265188 GGTAAATCCAGGTAATGAACA
1 GGTAAATCCAGGTAATGAACA
265209 GGTAAATCCAGGTAATGAACA
1 GGTAAATCCAGGTAATGAACA
265230 ACTAAGACCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.24, T:0.19
Consensus pattern (21 bp):
GGTAAATCCAGGTAATGAACA
Left flanking sequence: Indices 264688 -- 265187
ATGTGAATATACAGCGACGTCAAATAAGTATGAAGTAAAAGACCTAGTCCATTCATCACGAGCAT
ATCTCTTGGTTTAGCTATGAAAAATACAGCACTCATTGGATTATATGTTTCCTTATTGTAGTCAT
AACAACTAAACCTTTCCAGTTCACCATTCTGATTCACGATGTGGAGATAAAGCGGAGAGAAAATA
AAAGAACCATTTTCGATTTCTTTTTTTATTGAACTAATCTCATCTACTGACACTTTCTTATATAG
ATCTCTAATATTATCTGCTGACGATCTCTTAATAAATAGATCTCCTAAATAGCATAACAAAAGAT
CAATACTTTTTAATAGAGAACCCCGATCCAGAACTATGGAATTGGGGTTTGTTTCATCAAGTAGA
AAGTGCATATCTTCTCTATCGAGATATTTATTCGTATTACTACCGCTACCCGCAAATCCACGTAA
TGAACAACTAAAACAGGTAAATCCAGGTAATGAACAACTAAGACC
Right flanking sequence: Indices 265230 -- 265729
ACTAAGACCGGTAAATCCAGGTAATGAACAACTAAGACCAGCTAAAACCCGTACTGAACGACGAG
CAAGATTAAAATGTGAGTTTAGTACGTATTTAGGAGACAACATAGGTTTAATTCTGTTTGTATAC
GAATACTAGGTGTATCGCTTAGACTGCATAACTCATAAGTGAGATGGATTGAGTGATACGAACAC
CCTCACCATCTCACCACCCTGGCGGCTATTACCGTGGTAGGGATTTCCCCTACCTTTAACTCCCC
CATAGAAATAAGCGGTTAAAATCTGACCATTACACTACCTACAAATGAGGCGTGTAACTTACCTA
CTTGGGAGAGACAAGCCTCTAATCTGGATTTCACCAGGGTTAGTAGAGATAAATGAACCCATACC
CAAGGGGGTCCGGGTTTTATCTCTATAGGCTCTCCAATAGAGTATACATATTTTTTCTTACTCTT
ATTCTTTCTTTTTAGAATAAAATATAGGAAGGAGATTTTACTTCT
Found at i:265230 original size:51 final size:51
Alignment explanation
Indices: 265154--265259 Score: 212
Period size: 51 Copynumber: 2.1 Consensus size: 51
265144 GAACAACTAA
265154 AACAGGTAAATCCAGGTAATGAACAACTAAGACCGGTAAATCCAGGTAATG
1 AACAGGTAAATCCAGGTAATGAACAACTAAGACCGGTAAATCCAGGTAATG
265205 AACAGGTAAATCCAGGTAATGAACAACTAAGACCGGTAAATCCAGGTAATG
1 AACAGGTAAATCCAGGTAATGAACAACTAAGACCGGTAAATCCAGGTAATG
265256 AACA
1 AACA
265260 ACTAAGACCA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 55 1.00
ACGTcount: A:0.44, C:0.18, G:0.21, T:0.17
Consensus pattern (51 bp):
AACAGGTAAATCCAGGTAATGAACAACTAAGACCGGTAAATCCAGGTAATG
Left flanking sequence: Indices 264654 -- 265153
ATTATACGTCACGCGTAAACCAAATGAGGTGGGAATGTGAATATACAGCGACGTCAAATAAGTAT
GAAGTAAAAGACCTAGTCCATTCATCACGAGCATATCTCTTGGTTTAGCTATGAAAAATACAGCA
CTCATTGGATTATATGTTTCCTTATTGTAGTCATAACAACTAAACCTTTCCAGTTCACCATTCTG
ATTCACGATGTGGAGATAAAGCGGAGAGAAAATAAAAGAACCATTTTCGATTTCTTTTTTTATTG
AACTAATCTCATCTACTGACACTTTCTTATATAGATCTCTAATATTATCTGCTGACGATCTCTTA
ATAAATAGATCTCCTAAATAGCATAACAAAAGATCAATACTTTTTAATAGAGAACCCCGATCCAG
AACTATGGAATTGGGGTTTGTTTCATCAAGTAGAAAGTGCATATCTTCTCTATCGAGATATTTAT
TCGTATTACTACCGCTACCCGCAAATCCACGTAATGAACAACTAA
Right flanking sequence: Indices 265260 -- 265759
ACTAAGACCAGCTAAAACCCGTACTGAACGACGAGCAAGATTAAAATGTGAGTTTAGTACGTATT
TAGGAGACAACATAGGTTTAATTCTGTTTGTATACGAATACTAGGTGTATCGCTTAGACTGCATA
ACTCATAAGTGAGATGGATTGAGTGATACGAACACCCTCACCATCTCACCACCCTGGCGGCTATT
ACCGTGGTAGGGATTTCCCCTACCTTTAACTCCCCCATAGAAATAAGCGGTTAAAATCTGACCAT
TACACTACCTACAAATGAGGCGTGTAACTTACCTACTTGGGAGAGACAAGCCTCTAATCTGGATT
TCACCAGGGTTAGTAGAGATAAATGAACCCATACCCAAGGGGGTCCGGGTTTTATCTCTATAGGC
TCTCCAATAGAGTATACATATTTTTTCTTACTCTTATTCTTTCTTTTTAGAATAAAATATAGGAA
GGAGATTTTACTTCTTAGAAGGAGATGACTAGATCTTTGTATTTA
Found at i:265288 original size:30 final size:30
Alignment explanation
Indices: 265211--265288 Score: 86
Period size: 30 Copynumber: 2.6 Consensus size: 30
265201 AATGAACAGG
* * *
265211 TAAATCCAGGTAATGAACAACTAAGACCGG
1 TAAAACCACGTAATGAACAACTAAGACCGC
* *
265241 TAAATCCAGGTAATGAACAACTAAGACCAGC
1 TAAAACCACGTAATGAACAACTAAGACC-GC
*
265272 TAAAACC-CGTACTGAAC
1 TAAAACCACGTAATGAAC
265289 GACGAGCAAG
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
30 36 0.84
31 7 0.16
ACGTcount: A:0.44, C:0.23, G:0.17, T:0.17
Consensus pattern (30 bp):
TAAAACCACGTAATGAACAACTAAGACCGC
Left flanking sequence: Indices 264711 -- 265210
ATAAGTATGAAGTAAAAGACCTAGTCCATTCATCACGAGCATATCTCTTGGTTTAGCTATGAAAA
ATACAGCACTCATTGGATTATATGTTTCCTTATTGTAGTCATAACAACTAAACCTTTCCAGTTCA
CCATTCTGATTCACGATGTGGAGATAAAGCGGAGAGAAAATAAAAGAACCATTTTCGATTTCTTT
TTTTATTGAACTAATCTCATCTACTGACACTTTCTTATATAGATCTCTAATATTATCTGCTGACG
ATCTCTTAATAAATAGATCTCCTAAATAGCATAACAAAAGATCAATACTTTTTAATAGAGAACCC
CGATCCAGAACTATGGAATTGGGGTTTGTTTCATCAAGTAGAAAGTGCATATCTTCTCTATCGAG
ATATTTATTCGTATTACTACCGCTACCCGCAAATCCACGTAATGAACAACTAAAACAGGTAAATC
CAGGTAATGAACAACTAAGACCGGTAAATCCAGGTAATGAACAGG
Right flanking sequence: Indices 265289 -- 265788
GACGAGCAAGATTAAAATGTGAGTTTAGTACGTATTTAGGAGACAACATAGGTTTAATTCTGTTT
GTATACGAATACTAGGTGTATCGCTTAGACTGCATAACTCATAAGTGAGATGGATTGAGTGATAC
GAACACCCTCACCATCTCACCACCCTGGCGGCTATTACCGTGGTAGGGATTTCCCCTACCTTTAA
CTCCCCCATAGAAATAAGCGGTTAAAATCTGACCATTACACTACCTACAAATGAGGCGTGTAACT
TACCTACTTGGGAGAGACAAGCCTCTAATCTGGATTTCACCAGGGTTAGTAGAGATAAATGAACC
CATACCCAAGGGGGTCCGGGTTTTATCTCTATAGGCTCTCCAATAGAGTATACATATTTTTTCTT
ACTCTTATTCTTTCTTTTTAGAATAAAATATAGGAAGGAGATTTTACTTCTTAGAAGGAGATGAC
TAGATCTTTGTATTTACTGGTCTCGATAATTGAAGAGAGGAAAGA
Found at i:265288 original size:81 final size:81
Alignment explanation
Indices: 265131--265288 Score: 237
Period size: 81 Copynumber: 2.0 Consensus size: 81
265121 CGCTACCCGC
* *
265131 AAATCCACGTAATGAACAACTAAAACAGGTAAATCCAGGTAATGAACAACTAAGACCGGTAAATC
1 AAATCCACGTAATGAACAACTAAAACAGGTAAATCCAGGTAATGAACAACTAAGACCGCTAAAAC
*
265196 CAGGTAATGAACAGGT
66 CACGTAATGAACAGGT
* * *
265212 AAATCCAGGTAATGAACAACTAAGACCGGTAAATCCAGGTAATGAACAACTAAGACCAGCTAAAA
1 AAATCCACGTAATGAACAACTAAAACAGGTAAATCCAGGTAATGAACAACTAAGACC-GCTAAAA
*
265277 CC-CGTACTGAAC
65 CCACGTAATGAAC
265289 GACGAGCAAG
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
81 62 0.90
82 7 0.10
ACGTcount: A:0.45, C:0.21, G:0.18, T:0.16
Consensus pattern (81 bp):
AAATCCACGTAATGAACAACTAAAACAGGTAAATCCAGGTAATGAACAACTAAGACCGCTAAAAC
CACGTAATGAACAGGT
Left flanking sequence: Indices 264631 -- 265130
GATTCAATTTGTTGCATAAATGTATTATACGTCACGCGTAAACCAAATGAGGTGGGAATGTGAAT
ATACAGCGACGTCAAATAAGTATGAAGTAAAAGACCTAGTCCATTCATCACGAGCATATCTCTTG
GTTTAGCTATGAAAAATACAGCACTCATTGGATTATATGTTTCCTTATTGTAGTCATAACAACTA
AACCTTTCCAGTTCACCATTCTGATTCACGATGTGGAGATAAAGCGGAGAGAAAATAAAAGAACC
ATTTTCGATTTCTTTTTTTATTGAACTAATCTCATCTACTGACACTTTCTTATATAGATCTCTAA
TATTATCTGCTGACGATCTCTTAATAAATAGATCTCCTAAATAGCATAACAAAAGATCAATACTT
TTTAATAGAGAACCCCGATCCAGAACTATGGAATTGGGGTTTGTTTCATCAAGTAGAAAGTGCAT
ATCTTCTCTATCGAGATATTTATTCGTATTACTACCGCTACCCGC
Right flanking sequence: Indices 265289 -- 265788
GACGAGCAAGATTAAAATGTGAGTTTAGTACGTATTTAGGAGACAACATAGGTTTAATTCTGTTT
GTATACGAATACTAGGTGTATCGCTTAGACTGCATAACTCATAAGTGAGATGGATTGAGTGATAC
GAACACCCTCACCATCTCACCACCCTGGCGGCTATTACCGTGGTAGGGATTTCCCCTACCTTTAA
CTCCCCCATAGAAATAAGCGGTTAAAATCTGACCATTACACTACCTACAAATGAGGCGTGTAACT
TACCTACTTGGGAGAGACAAGCCTCTAATCTGGATTTCACCAGGGTTAGTAGAGATAAATGAACC
CATACCCAAGGGGGTCCGGGTTTTATCTCTATAGGCTCTCCAATAGAGTATACATATTTTTTCTT
ACTCTTATTCTTTCTTTTTAGAATAAAATATAGGAAGGAGATTTTACTTCTTAGAAGGAGATGAC
TAGATCTTTGTATTTACTGGTCTCGATAATTGAAGAGAGGAAAGA
Found at i:276673 original size:26 final size:26
Alignment explanation
Indices: 276637--276690 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
276627 TAATATGACA
276637 TTATTTAAGAGATATATTCATTCTCT
1 TTATTTAAGAGATATATTCATTCTCT
276663 TTATTTAAGAGATATATTCATTCTCT
1 TTATTTAAGAGATATATTCATTCTCT
276689 TT
1 TT
276691 CTGCGGAACT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.11, G:0.07, T:0.52
Consensus pattern (26 bp):
TTATTTAAGAGATATATTCATTCTCT
Left flanking sequence: Indices 276137 -- 276636
TAAGATTCTTTAACAGCTTTCCGCTTAACAACAGAGCATCCCTCTCAAATATTAGAGCTCTTGCA
TCCCTCGATTTATTATCAATTGGCACAGCGGATTCGAGAGCGGCATTTTAAGCATCTCCTTCAGC
GCACATTGCCACCAATCTAATTAATTGGTACTTTCCTTAAACCCGTGGTTTTTCAATGGATTTCC
CTTTTGCCTCGTAAACGAGTTTATCTTTTGACCAAAAGCGTACTTTACCGTGGGTTTTCTCTCAT
AAATCGATTGATTCGGGCGCGAAGTAAGAACAGATTCTCTTGCGGGGAAGAGGGCAGAGGCTCTA
CCGTTGATGGATGCGAGGCTCGACGAGCGGGGGTTCCTTAGGTATTTGTACAAGCGCAGTGGGAG
TTGTTTGAGCAGCAGATGAAACAGTAATGAAATAAAGTAATAAGAGAATGCAAAAAGAAGGCTGT
TTTAACGTTGGTTATGGATAGGATGCAAGGGACCTTAATATGACA
Right flanking sequence: Indices 276691 -- 277190
CTGCGGAACTAGACCCCCCAGAACAACAAGCACTTATTGCAACCAATGCCACCCAATCCACGGCC
AATCAATGCCTTTCCGCTTCAATGGACTCAGCTGCTTATTCTGCTTCATCCTCCCTTTCAGGCTT
TTGACTCGTAAACTCATTCTTCCCCCGCGAGGGTGCCGAAACTGTGGTTACAAAGCATCGTAAAT
GGGCATCTTGATCTCAGATCCCAACGTCGTAACTCGACCCTGATTTTTATCACTCCGTGGAGCCC
CCTTCGAAAATGCTCCTTAATGCGCCAGAATACCATATGGTTCATTATTCACTTGAGAGCGGGAA
GGGAACGTAAACTCAATCAGCAGGATGCAACAGCCGGAGGAGTTAACAAGACAGCATCTAAACGC
TATAGGTTGAACCGGCAACAGAACAGCCAATTGTGAATGGATGATTGCGGGTAGCTTAAATTCAG
TTAACGAAGCGGTCAATGCGTAGTGCGATCCGGATCTTCAGAAGC
Found at i:304221 original size:17 final size:17
Alignment explanation
Indices: 304195--304227 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
304185 TTCCTATCTC
304195 TAAAGGGGC-TTACCCA
1 TAAAGGGGCTTTACCCA
304211 TAAAGGGGGCTTTACCC
1 TAAA-GGGGCTTTACCC
304228 TGACACAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 5 0.33
18 6 0.40
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.21
Consensus pattern (17 bp):
TAAAGGGGCTTTACCCA
Left flanking sequence: Indices 303695 -- 304194
TCAGTTTCTCTGAGGCTCTCAAGCTGAGAGAAAGTGTTTGGATGATTTTTGCATGGTTTCAGGGC
GCTTTGAGAAATAGAATATCTTATGTTCTCCTAATATCGATAGGCAAGTTGCTTATTTCTGTGTG
CTCTAGGCTTGACAAGCTAAACAGAAAAACTTTTTTTGGTAAAAATAAGAGGAAGATCCATCTTG
CTAATTAGGATTTGGTGTGTAGACCAAAAGGTATGGGCGCCGGAGTTTCCTCTCGTTGAGATTTT
GGCAATCTCGTGCGGGTTGAAGCAAGCATTAGATATGGGCCTTTCTTCTCTGATGCTGGAGTCAG
ACGCGACGCTCAGGCGGTTGTCTTTGCATTGAATGAAGAGGAGAGAAGCGCGCAAACAGTGTCGG
ACGTTACTTAGGCAATGCCGACCGGCACTTCAACCACTGAAATAGCAGCAAATTCTTTTTTAAAT
TCTCAATGTTGCCTCAATAAAGCAGCTAGGCCGTTTTCCTATCTC
Right flanking sequence: Indices 304228 -- 304727
TGACACAAGTAGTCTCCGCGGCTATACTATATCAAATAGCCTATAGCGCTACTGTACTTGTTTTT
TTTTGTCTGGTTCTTTGCTAGCCAGACACCTGTCAACCAACCATCCTGCAACTATAAGTTCTTTC
GCAAGCCAAGCCAATATCCCTTGATCCGCCCGAGGAGAATCCGAGTGAAAGCAGCAACCAGCGTG
ATAGTAGCGTGTGTCAGCAAACAACTCTAAGCTGAACTGATTACAGATAGGTAGTGCATTCTCTG
AGGTGAGTGAAGTGCCCTACTTCTATCTTACGGGTAGTGGTAGTGTAGCTGGGCTATTGATCCTG
GTGAAGGAGCCCTATCAATCAAGTAAAGGCCGGGCGAGGGGTGATAGAATAGCAAGCAGGGTAAC
TTACGCAAGCAAAGGAAAAGACCCTTCCGACGACGCAGCAGCCAACCACCTATTCGAGCCTGCAA
AAATCTATGTGAACAACTAGGGGCCCGCGATTACTAAGGATCGAT
Done.