123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_058741
Parameters: 2 7 7 80 10 50 500
Length:  344184

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1345--1411	24	2.8	24	82	8	75	34	8	20	35	1.84
2660--2719	27	2.2	27	93	0	102	38	8	30	23	1.84
16536--16580	23	2.0	22	91	4	72	31	17	33	17	1.94
16832--16864	17	1.9	17	93	0	57	78	3	12	6	1.04
22483--22534	26	2.0	26	100	0	104	38	26	30	3	1.74
32564--32618	18	3.1	18	100	0	110	50	16	5	27	1.66
65975--66021	24	2.0	24	86	0	67	23	27	21	27	1.99
85307--85373	24	2.8	24	82	8	75	34	8	20	35	1.84
86622--86681	27	2.2	27	93	0	102	38	8	30	23	1.84
100497--100541	23	2.0	22	91	4	72	31	17	33	17	1.94
100793--100825	17	1.9	17	100	0	66	75	6	12	6	1.16
139285--139383	33	3.0	33	98	0	189	18	23	21	37	1.94
152929--153018	42	2.1	41	91	4	144	26	32	8	32	1.87
152936--153034	42	2.5	39	83	8	130	26	33	8	32	1.85
180871--180897	9	3.0	9	100	0	54	33	11	22	33	1.89
191920--191986	24	2.8	24	82	8	75	34	8	20	35	1.84
193235--193294	27	2.2	27	93	0	102	38	8	30	23	1.84
196851--196952	34	3.0	34	100	0	204	35	14	17	32	1.91
198623--198782	4	38.5	4	73	14	119	66	4	0	29	1.11
198623--198781	19	8.5	19	81	16	142	66	4	0	28	1.11
198619--198781	38	4.4	38	79	19	163	65	4	0	29	1.13
199654--199686	14	2.3	15	85	15	52	69	0	18	12	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
225652--225688	18	2.1	18	89	0	56	16	37	29	16	1.90
239443--239528	5	17.2	5	76	9	86	37	6	17	38	1.77
239821--239845	13	1.9	13	100	0	50	48	4	0	48	1.20
243129--243227	33	3.0	33	98	0	189	18	23	21	37	1.94
260916--260947	14	2.1	16	88	11	50	56	0	6	37	1.25
268662--268723	19	3.1	19	82	17	88	48	0	20	30	1.50
268667--268712	23	2.0	23	100	0	92	47	0	21	30	1.51
270349--270384	18	2.0	18	100	0	72	55	5	0	38	1.23
270695--270732	19	2.1	19	95	5	69	34	0	0	65	0.93
271992--272035	22	1.9	24	86	9	65	47	2	11	38	1.52
272348--272413	26	2.4	26	87	10	87	62	9	9	19	1.52
274873--274918	21	2.2	21	96	0	83	13	32	13	41	1.82
274888--274918	15	2.1	15	100	0	62	12	32	12	41	1.81
290343--290383	20	2.0	20	100	0	82	24	14	4	56	1.58
290347--290390	20	2.2	20	91	0	70	29	13	6	50	1.68
293492--293540	24	2.0	24	100	0	98	32	0	22	44	1.53
294467--294507	21	2.0	21	95	0	73	34	9	26	29	1.88
295848--295883	18	2.0	18	100	0	72	27	5	11	55	1.57
295911--295945	15	2.3	15	95	0	61	57	0	11	31	1.34
296642--296671	15	2.0	15	100	0	60	46	20	13	20	1.83
299025--299074	14	3.7	13	84	7	57	16	12	0	72	1.13
299025--299083	23	2.5	23	84	10	75	16	10	0	72	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
299025--299082	10	6.1	10	75	18	61	17	10	0	72	1.11
308583--308623	22	2.0	21	90	9	66	19	26	4	48	1.69
327119--327170	26	2.0	26	100	0	104	38	26	30	3	1.74
328364--328404	21	2.0	21	95	0	73	34	26	7	31	1.84
332715--332774	18	3.3	18	100	0	120	40	5	50	5	1.46
332757--332784	12	2.3	12	100	0	56	35	7	50	7	1.57
332757--332863	54	2.0	54	100	0	214	33	16	38	11	1.85
332810--332838	12	2.4	12	100	0	58	34	6	51	6	1.55
332898--332942	12	3.8	12	93	0	63	17	8	40	33	1.81
342471--342507	18	2.1	18	89	0	56	16	37	29	16	1.90

Tables:   1

The End!