Specifications
==============

Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt3/NC_053921.1/NC_053921/Repetitive_sequence/123.misa.ini"

Definement of microsatellites (unit size / minimum number of repeats):
(1/10) (2/6) (3/5) (4/5) (5/5) (6/5) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           1045106
Total number of identified SSRs:                 130
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    3


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	108
2	20
3	2

Frequency of identified SSR motifs
----------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	total
A	-	-	-	-	-	24	6	5	1	5	1	2		1		45
C	-	-	-	-	-	1										1
G	-	-	-	-	-	1										1
T	-	-	-	-	-	27	12	4	7	5	2	2		1	1	61
AG	-	2														2
AT	-	2	2	1				1								6
CT	-	2	1													3
GA	-	2														2
TA	-	4	1		1											6
TC	-	1														1
AAG	2															2

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	total
A/T	-	-	-	-	-	51	18	9	8	10	3	4		2	1	106
C/G	-	-	-	-	-	2										2
AG/CT	-	7	1													8
AT/AT	-	6	3	1	1			1								12
AAG/CTT	2															2