123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_053921
Parameters: 2 7 7 80 10 50 500
Length:  1045106

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58936--58966	15	2.1	15	93	0	53	16	35	12	35	1.87
131585--131702	57	2.1	57	85	3	157	15	19	36	28	1.92
139221--139265	22	2.0	22	83	8	56	2	28	15	53	1.54
201565--201607	18	2.4	18	81	18	54	18	20	23	37	1.94
222566--222617	20	2.5	20	81	3	59	36	11	28	23	1.90
228598--228635	12	3.1	12	88	11	51	44	2	44	7	1.47
229142--229166	13	1.9	13	100	0	50	40	32	12	16	1.84
246796--246837	12	3.5	12	81	12	59	33	23	40	2	1.68
250040--250076	18	2.1	18	89	0	56	32	35	16	16	1.91
253275--253306	16	2.0	16	100	0	64	37	6	18	37	1.76
379188--379225	20	2.0	20	89	5	60	39	18	23	18	1.92
409468--409506	19	2.1	19	100	0	78	41	15	20	23	1.90
517614--517699	43	2.0	43	100	0	172	13	25	18	41	1.88
523280--523314	18	1.9	18	88	0	52	34	17	37	11	1.85
544134--544202	36	1.9	36	93	0	120	34	21	17	26	1.95
648994--649070	38	2.0	38	94	0	136	14	37	11	36	1.82
673322--673355	17	2.0	17	94	0	59	23	20	5	50	1.70
683495--683546	18	2.7	18	85	8	59	36	9	40	13	1.77
688427--688560	69	1.9	70	81	1	162	27	26	11	34	1.91
689475--689517	18	2.4	18	80	3	52	11	30	13	44	1.80
703579--703640	21	3.0	21	87	0	88	48	6	22	22	1.73
711351--711379	2	15.0	2	92	7	51	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
712505--712571	27	2.5	27	100	0	134	5	40	20	32	1.77
721713--721747	17	2.1	17	88	0	52	42	5	25	25	1.77
786360--786415	27	2.1	27	83	12	71	12	28	33	25	1.92
805269--805294	13	2.0	13	100	0	52	46	23	15	15	1.83
847681--847712	16	2.0	16	93	0	55	34	25	9	31	1.87
877074--877109	10	3.8	10	85	14	58	52	0	0	47	1.00
877075--877109	18	1.9	18	100	0	70	51	0	0	48	1.00
926663--926696	12	2.8	12	90	0	50	23	17	41	17	1.90
938317--938373	28	2.0	28	100	0	114	21	21	33	24	1.97
941126--941181	21	2.7	21	68	0	58	28	17	23	30	1.97
944552--944599	24	2.0	24	87	0	69	10	29	10	50	1.70
945397--945435	17	2.3	17	81	0	51	38	2	28	30	1.70
956831--956878	19	2.6	19	80	3	53	18	18	29	33	1.95
959963--960012	21	2.4	21	82	0	64	26	22	18	34	1.96
959981--960020	21	1.9	21	84	0	53	22	22	17	37	1.94
965250--965288	12	3.2	12	92	0	60	38	10	41	10	1.73
1011481--1011528	26	1.9	25	83	8	62	18	31	29	20	1.97

Tables:   1

The End!