Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_040010
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 478813
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Found at i:18530 original size:18 final size:18
Alignment explanation
Indices: 18497--18531 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
18487 TAGCTCCTTC
*
18497 TGAGGAATACATCACAAG
1 TGAGGAATACACCACAAG
*
18515 TGAGGAATACCCCACAA
1 TGAGGAATACACCACAA
18532 AGAGCAATTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.43, C:0.23, G:0.20, T:0.14
Consensus pattern (18 bp):
TGAGGAATACACCACAAG
Left flanking sequence: Indices 17997 -- 18496
TTCTTTCGAACTCGTCCAAATCCACCCCTGTGAAGAACTTCTTCATAGGATCAAGTGCATACCTG
ATTCTATGAGGCCACCGAAGAACCAAGTTAGAATGAAATTAAAAAACAATGCTTCCTTGTCCGTG
TGGAACATGGATTAGCATTATGTCATTCCTACAAGTGATCCCCCATCCAGGATTAGAAGAAGTGC
TATATGAGGACTTTGAGATCAAATAGAATATGTTTTTTTCCATTCCTCGTGAGCCACTTATTTCT
CCGAAAGACGAGATCAAAGTGATTTTCCTCCTTTTTCCCAATAAGTCGACGGACTTACACCATTG
GGATACTTCGAATAAACTGGAGTACATATAGGATACACCGGTGCTAAAACCTTTTCTCAAGATAT
GAGGAAGAAAAAGATATCATGATGTAAGTCGATTATTCCTTGCATCATAGGTGTTGCTGCGTCTT
GAGATCCTAATTGCCATGGTTCCGCTGCATCACAATAGCTCCTTC
Right flanking sequence: Indices 18532 -- 19031
AGAGCAATTGGAATTGGTAACCAGAAAATGACACTTTTCAAAATTTTGACAAAAGGTGGAAATTT
TTCAAACATATTGATGGATTGAGAGAAAATGATTCCCTACAGACAGAAAGAGATTCCTTCCTGTA
CGAGTCGTGAAGAATTAGATAGAGCTTTGGTTGGTTGTTGACCAACGGAAAGCATGGGAGTTTTG
GGCGTATGAAGAAAAGTCACTTTTTCTTCTCTTACGATATTTCGAGTTGGATGAACGGATCGCTC
CTAAATAGAGACGTTCTCAACTCTACGAGAAAGCAACTGAAAGCAAATCATCGAATAAAGAGAGA
GAAATCCAATCCACTCTTAGTCGATACCCAGTATCTCCCTTAGATAGGGGGAGTTTGGGCCATGC
ATTCGAAGATCTTGGGAAACTCCATTCAAAAAATGGAGTTCCCTTTGGTCCCTTACTGCAACATC
CCCGCCTTGGAGGTCAATTTGATCCCGCTTGGCGGTTAAAAAATC
Found at i:19558 original size:15 final size:15
Alignment explanation
Indices: 19532--19578 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
19522 AGTCTCAGAG
19532 AAAAAGAAAATAGAAT
1 AAAAA-AAAATAGAAT
* **
19548 TATGAAAAATAGAAT
1 AAAAAAAAATAGAAT
19563 AAAAAAAAATAGAAT
1 AAAAAAAAATAGAAT
19578 A
1 A
19579 CAGAAAAGGG
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
15 23 0.92
16 2 0.08
ACGTcount: A:0.72, C:0.00, G:0.11, T:0.17
Consensus pattern (15 bp):
AAAAAAAAATAGAAT
Left flanking sequence: Indices 19032 -- 19531
CACGAATGCTTCTTCCGGATTGTAAGCCGCATTCTTCTCTAAGGCAGGATGTTGAGCAAGGATAC
CCTTCAAGATCGAATAGCTTTCATGTTTGCCTTCGCGGATCTGTAGATCTCGATTCTCAAAGTCG
AGTAATCGATTATATTCCCCCTGAGAGGAACAATTCTCGAGTAGCGCTTTGATTTCGGACCAATA
GACCCCTTTGTCCTTATCAAGGAGGAAAATGCTTCCTTTATTTTCCAAGAAAGAAATTCGGTTGT
GCATGGACGCCTCGAACCCCCTATTGTGGGTAACTGGCCAAGGCTCTTGTAGCACCCGCTCCTCG
AAGGAAGTCTTCCCCGTCCACGAGGAAGAGTTGGACGAGCCCGAATCTCCCGAGGAGGCCATCAT
CATGGTACCGTATTGTGTCTCGGCAGTCATGACGGTCCCCACACCGAAAATAACAACTAACAGTT
GATTCACGAAAAGACCCACTTTCAAGAGAAAGTAAAGTCTCAGAG
Right flanking sequence: Indices 19579 -- 20078
CAGAAAAGGGGAAAGCCGTACTTTTCTTTCAAATGAAAAGAATAATGATGAAAGAGTAATATCAC
TAACAAAAGAAATGCTCCAAAAAGTACGAGATGAATACCAGTGGGCATTATAGCGATCTCTTCGG
ATCCCAGACACCGTCTAAAAAGAACGGCGGATAGGATATTTAGAAAGGTTACTACAGCTGCTAAT
AACATCTTTCTAGCCTGCATATTCGTGGAACTCCATCTCATTTAGAAAGCTTATCTCTATCTTTC
AGAAACTTCACGGGAAGTGGTTTAGGAAAGGACTTTCGAATCGGATGCGCTCACCCAGCGAGAAA
GGCCCTGACCCTGCCAACCAACTATCAAAAAGAAAGAAAGGAACGAAAGGAGAAGAGAACTTCGT
ATTTTGGTAATTCTCTACCAGATCCGGCTCGCTTATTGATAGAGTGAATAGATCTGCCATTTCTT
GAAATCTCTCTTCTGATTCAAAATCGTGGTGTAACGTGTATCCCC
Found at i:19585 original size:15 final size:14
Alignment explanation
Indices: 19538--19585 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 14
19528 AGAGAAAAAG
*
19538 AAAATAGAATTATGA
1 AAAATAGAA-TAAGA
*
19553 AAAATAGAATAAAAA
1 AAAATAGAAT-AAGA
19568 AAAATAGAATACAGA
1 AAAATAGAATA-AGA
19583 AAA
1 AAA
19586 GGGGAAAGCC
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
14 2 0.07
15 26 0.93
ACGTcount: A:0.71, C:0.02, G:0.10, T:0.17
Consensus pattern (14 bp):
AAAATAGAATAAGA
Left flanking sequence: Indices 19038 -- 19537
TGCTTCTTCCGGATTGTAAGCCGCATTCTTCTCTAAGGCAGGATGTTGAGCAAGGATACCCTTCA
AGATCGAATAGCTTTCATGTTTGCCTTCGCGGATCTGTAGATCTCGATTCTCAAAGTCGAGTAAT
CGATTATATTCCCCCTGAGAGGAACAATTCTCGAGTAGCGCTTTGATTTCGGACCAATAGACCCC
TTTGTCCTTATCAAGGAGGAAAATGCTTCCTTTATTTTCCAAGAAAGAAATTCGGTTGTGCATGG
ACGCCTCGAACCCCCTATTGTGGGTAACTGGCCAAGGCTCTTGTAGCACCCGCTCCTCGAAGGAA
GTCTTCCCCGTCCACGAGGAAGAGTTGGACGAGCCCGAATCTCCCGAGGAGGCCATCATCATGGT
ACCGTATTGTGTCTCGGCAGTCATGACGGTCCCCACACCGAAAATAACAACTAACAGTTGATTCA
CGAAAAGACCCACTTTCAAGAGAAAGTAAAGTCTCAGAGAAAAAG
Right flanking sequence: Indices 19586 -- 20085
GGGGAAAGCCGTACTTTTCTTTCAAATGAAAAGAATAATGATGAAAGAGTAATATCACTAACAAA
AGAAATGCTCCAAAAAGTACGAGATGAATACCAGTGGGCATTATAGCGATCTCTTCGGATCCCAG
ACACCGTCTAAAAAGAACGGCGGATAGGATATTTAGAAAGGTTACTACAGCTGCTAATAACATCT
TTCTAGCCTGCATATTCGTGGAACTCCATCTCATTTAGAAAGCTTATCTCTATCTTTCAGAAACT
TCACGGGAAGTGGTTTAGGAAAGGACTTTCGAATCGGATGCGCTCACCCAGCGAGAAAGGCCCTG
ACCCTGCCAACCAACTATCAAAAAGAAAGAAAGGAACGAAAGGAGAAGAGAACTTCGTATTTTGG
TAATTCTCTACCAGATCCGGCTCGCTTATTGATAGAGTGAATAGATCTGCCATTTCTTGAAATCT
CTCTTCTGATTCAAAATCGTGGTGTAACGTGTATCCCCCCCTGTT
Found at i:79608 original size:25 final size:25
Alignment explanation
Indices: 79579--79628 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
79569 CACCAAGTAC
79579 GGCATGACCTATTGAACACCACACA
1 GGCATGACCTATTGAACACCACACA
79604 GGCATGACCTATTGAACACCACACA
1 GGCATGACCTATTGAACACCACACA
79629 TAGTAGCAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.32, G:0.16, T:0.16
Consensus pattern (25 bp):
GGCATGACCTATTGAACACCACACA
Left flanking sequence: Indices 79079 -- 79578
TCACTGTTGAAATTCCGGCAACTTGTTCAATTCCTTCTATTATATAATAGATCAGCCCTTATCAA
GAACTCTCGCCAAATCACCAGCCTTCCTATTAGGCCAGAATGTACTACCACCGTGGTCATTCATT
CCTATGCCAAGGCCGGAGGCATGGCAGATGAACTTCACTTTGCCCCTCCCTTTCACTTATACGAA
TAGCTCGTAATGCTGCGTCTTTTCCGAAACCGGGACCTTTTCTCATTACTTCTGCTCCTTGCATA
CCCTTTTGTCTTGAAGTAAGACATTTGAAGCAAAACATTCGAAATAACTCGTAGTAGAAATAGCA
CATATATTTAAGTTTGGATCCGCTTTATTTATTCTCTTTTTCCTTTAAGGAACTCCTATTTCTCT
CCAGCCAGACGCACCAAAACAAGCAAACGGGTGCTGTTCTCCATATCCTGTTAGTTTTCCTCCTT
TTCTTATAAAGAAAGCAGCTTATAAAAACTTCTTTCACCAAGTAC
Right flanking sequence: Indices 79629 -- 80128
TAGTAGCAGCTCTCAAAGCTCTCTGGTCACACTAGACTGTAGCAACAAGTGGTTAGTACTTTCAC
CTTCTTGCTTGCCCATAAAACACCAATTAATATACACCTTACCCCCTTATAAGATTTTCACCAGT
TCAAATTGCTCCTAAGAAGCTTCACATGCAAAAATGGCAACCTTTTTAGGGGTGTTAGAGTTTAG
CTTCCAAATAGCCATGGAAATGAATTATCGGCTGAGTAAGTGAATGCCTCATAACAGGATTTCAC
AGAAAAATTCCTTTTTTTATCTTTATTGATACAGATGATTGTTCGGGCATCTCCTTGACCGAAGG
AGTACTGAAGAAGCTTTCATTTTCTCTTAACGTTAGTGCGAAAAGAGTAAAGGTATTCCCCTATC
CTTCTCTAGGGGATTCATTAAAGGACCTATATTTATCCCTGATTGGCCATTGATAGATCAGACTA
TCACCTCTTTTTGTTGAGATTTTCTTATACAGCGAACTTGTTTAG
Found at i:81316 original size:16 final size:17
Alignment explanation
Indices: 81295--81328 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
81285 TCTTCAAAAT
81295 AAAGAA-AAAAAAATAG
1 AAAGAAGAAAAAAATAG
*
81311 AAAGAAGAAAAAGATAG
1 AAAGAAGAAAAAAATAG
81328 A
1 A
81329 TTCTCAGTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.06
Consensus pattern (17 bp):
AAAGAAGAAAAAAATAG
Left flanking sequence: Indices 80795 -- 81294
GCATTCTAGGGAGGTGCTTGACAAAAGCTTCTTGAAACTGAAGCCTCCAGGCTTGATTACATAAG
GCTCTGTCCAGCCCATTGGCTCGACCCGGCCGGATATTGTAAATGCTGGGCCTGAGTGAGCCAGA
TCAATGAGATTGGATTCCAAGACAAACTCAACCAATTTTCTGCACCTTTAGTGTCTCACTGGGGC
TCCCCCTTCTCCTCTTGAGACAACTTCATTCATGTCCCCTGCGTGAAAGCCAGGGCATATTAGCT
ACTCTCCCCGCCCCCTTCCTTAATCTGAATATATTTCCTGAGCTCCTCTGGGGTTGGGAATGGCA
TAAATAGCTGTAAATAACCAGTCCATTTCCTTTGTTTCATAGCTTTCGGTTTCTTTTGTTTTCTT
CCTCCTTCGACGGAGCAAGTTTTAGTATGTGTTCAGCGAGTAAATAAAAAAAGGATCTTATTAAA
CTATCTACCTCTGGTTTCCCGTATAGATCCACCTTTCTTCAAAAT
Right flanking sequence: Indices 81329 -- 81828
TTCTCAGTACCACGATTAGACTAACAAGAGAGGAAATACGAGTAGAAAATCAGTAGTCACTCTGA
TACTTAAATCACCATATTGCGTAAGAGAAAGAGCGAGATATTGAGCGGCCGAAAATGTTATGAAA
GGATCGAGGAGGAGAAGGAGGAGAAGGAGGAGTAGTAGGAGTCCGTTTTCTGACGGAATCGAATG
ATAACGACAAGGATGGAAAAGTTTAAGTGGGCCTGGGTGTTAGCAAGTATGTTCATTGTGCCTGG
ACTCATTTCTTCAGTTTGTTTGATCCTAGGCGTAAGTTTACTGGTTCAAATGAAGCGGCGATATC
TTGGGGAAGGGTAAGACGCGGGGTAGAGGAATTGGTCAACTCGTCAGGCTCATGACCTGAAGACT
ACAGGTTCGAATCCTGTTCCCGCATAATCATCTGAAGGCGTAGTCAGCCTCAAGATTCCGTAAGT
AACTCAGTGCATGGCTTAAGGCTTAGAAAAAGAAAATGAAATAAG
Found at i:81479 original size:9 final size:9
Alignment explanation
Indices: 81465--81490 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
81455 GAAAGGATCG
81465 AGGAGGAGA
1 AGGAGGAGA
81474 AGGAGGAGA
1 AGGAGGAGA
81483 AGGAGGAG
1 AGGAGGAG
81491 TAGTAGGAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.58, T:0.00
Consensus pattern (9 bp):
AGGAGGAGA
Left flanking sequence: Indices 80965 -- 81464
TGCACCTTTAGTGTCTCACTGGGGCTCCCCCTTCTCCTCTTGAGACAACTTCATTCATGTCCCCT
GCGTGAAAGCCAGGGCATATTAGCTACTCTCCCCGCCCCCTTCCTTAATCTGAATATATTTCCTG
AGCTCCTCTGGGGTTGGGAATGGCATAAATAGCTGTAAATAACCAGTCCATTTCCTTTGTTTCAT
AGCTTTCGGTTTCTTTTGTTTTCTTCCTCCTTCGACGGAGCAAGTTTTAGTATGTGTTCAGCGAG
TAAATAAAAAAAGGATCTTATTAAACTATCTACCTCTGGTTTCCCGTATAGATCCACCTTTCTTC
AAAATAAAGAAAAAAAAATAGAAAGAAGAAAAAGATAGATTCTCAGTACCACGATTAGACTAACA
AGAGAGGAAATACGAGTAGAAAATCAGTAGTCACTCTGATACTTAAATCACCATATTGCGTAAGA
GAAAGAGCGAGATATTGAGCGGCCGAAAATGTTATGAAAGGATCG
Right flanking sequence: Indices 81491 -- 81990
TAGTAGGAGTCCGTTTTCTGACGGAATCGAATGATAACGACAAGGATGGAAAAGTTTAAGTGGGC
CTGGGTGTTAGCAAGTATGTTCATTGTGCCTGGACTCATTTCTTCAGTTTGTTTGATCCTAGGCG
TAAGTTTACTGGTTCAAATGAAGCGGCGATATCTTGGGGAAGGGTAAGACGCGGGGTAGAGGAAT
TGGTCAACTCGTCAGGCTCATGACCTGAAGACTACAGGTTCGAATCCTGTTCCCGCATAATCATC
TGAAGGCGTAGTCAGCCTCAAGATTCCGTAAGTAACTCAGTGCATGGCTTAAGGCTTAGAAAAAG
AAAATGAAATAAGGAACAACCGCGCTGGTTGTAGTCGTTCCGCCCTTTTCTCGAATAAAAGTTTA
TCATGACTCATTTCATTCCCTTTTTTGGTGTCTTAGCAGTAGGTTTTTTCGTACGTTTTCTAGGA
TCAGAAGGAAGCGCTATAATGACCGAAGGTAGAAATATCGTGCTT
Found at i:103103 original size:30 final size:31
Alignment explanation
Indices: 103069--103126 Score: 75
Period size: 30 Copynumber: 1.9 Consensus size: 31
103059 TCCTCTGCCG
*
103069 CTCTGTCTTCCT-T-CCCCCTACTTCTCTATC
1 CTCTGCCTTCCTGTGCCCCCT-CTTCTCTATC
*
103099 CTCTGCCTTGCTGTGCCCCCTCTTCTCT
1 CTCTGCCTTCCTGTGCCCCCTCTTCTCT
103127 TACTCCAAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 10 0.42
31 8 0.33
32 6 0.25
ACGTcount: A:0.03, C:0.47, G:0.09, T:0.41
Consensus pattern (31 bp):
CTCTGCCTTCCTGTGCCCCCTCTTCTCTATC
Left flanking sequence: Indices 102569 -- 103068
TTGGCCTATTAGTTGGCTTAAAACGGCCGATATGAGCTGAGATAGTCTCGGTCCTATGAATCTGA
CCGTACTTCCCGAGCCCGAGGGTCGAGCTGCGTTAAGCTCTTCTTCTCCGATTCTGTTAACGCCG
TCAACGCGAACTGCTGACGGTTCTCTCATTTCCTTTCTTCTAGCGCTTGACTTGGGATGGCACTG
TCTCGCGAAGCTGGAAATAGAGTGGCTAGGTGTTGTGTTCCCGGGCTAGGATTTCGTGGTAGCGA
GAGGAGCGGAAAAAGGGCAGTCCCATGTACTATGAATCAAAGGCTTTCCGGGATGAGTTCCCCTA
TTGGGGCAAGTAGCTTCTCCCCTGACCTTTAAACTAAGCTCGATGACAGAGTGAAAGAAAAGTGC
TTGAAAGGGGAAAGGAAAAGTCCTTCATTTCATAGTTCCTCCCCCGCCTATCTGGTGTCATGCCC
CGCTAGGAATTGATCTTCGCCTAAGAGGTTTCCGCTCCTCTGCCG
Right flanking sequence: Indices 103127 -- 103626
TACTCCAAGTGATTTCGTTCTTAGTGGATATAGAAGCTTCTGAAATCGGGTAGAAAAAGCTGTTA
AAGAAGGGAGCTCGTTTTTAAAGAAAAACTTAACTGAAAGAGGGGACCGGCATGCTGGTAATGAG
GAAAGCATACAGTCGATATGCGACATCCCATAGAAGAGAGTTAGTCAAAACCGATATGCGATCTC
TATCTATATTTCAATCTAATTGAATCTTTACTTGAATAGAAGACTTTTAACAACTGATCTGCGAA
TTAGATATAGATTAGATCAACAGCGGATATGCGACTCTCCTTCTTTAAAGCCAATTGAGGAGACT
TTGAGTCTTAGACTAAGAAAGAGAAAAGGGAACTAGCTACCATGCTAAGATACCTTCAGGGATGA
TAAGCACTATAGCTATAAAAGAAGGAAAAAAAAGGGGAAAGGGAAGAGTGTCTTTAAATCCTCCT
TGCTCTTTGTCTAAGATTGGACTAAAGGTACCAAAGCAGGCATCC
Found at i:146014 original size:111 final size:113
Alignment explanation
Indices: 145834--146106 Score: 401
Period size: 111 Copynumber: 2.4 Consensus size: 113
145824 ATTCTTTGGT
*
145834 GAGGGAAAGCAAGTCAAAGTCTTCCACCATCTTGCTTGCTTAGTTGCAAAGAAAGTGATGAGGCA
1 GAGGAAAAGCAAGTCAAAGTCTTCCACCATCTTGCTTGCTTAGTTGCAAAGAAAGTGATGAGGCA
145899 AAAGCCAACAAGACCTACTCAAAAG-AAAG-GGGGAAAAAGGACGGGA
66 AAAGCCAACAAGACCTACTCAAAAGAAAAGTGGGGAAAAAGGACGGGA
*
145945 GAGGAAAAGTAAGTCAAAGTCTTCCACCATCTTGCTTGCTTAGTTGCAAAGAAAGTGATGAGGCA
1 GAGGAAAAGCAAGTCAAAGTCTTCCACCATCTTGCTTGCTTAGTTGCAAAGAAAGTGATGAGGCA
* ** *
146010 AAAGCCGACAAGACCTACTCAAAAGAAAAGTGGGGAAAAA-GATTCTAGC
66 AAAGCCAACAAGACCTACTCAAAAGAAAAGTGGGGAAAAAGGA--CGGGA
* * * *
146059 GATTG-AAGGCAAGTCAAAGTCTTCCACTATCTTGCTTGGTTAGTTGCA
1 GA-GGAAAAGCAAGTCAAAGTCTTCCACCATCTTGCTTGCTTAGTTGCA
146107 TTGGGAGACT
Statistics
Matches: 146, Mismatches: 11, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
111 87 0.60
112 6 0.04
113 9 0.06
114 43 0.29
115 1 0.01
ACGTcount: A:0.37, C:0.18, G:0.25, T:0.20
Consensus pattern (113 bp):
GAGGAAAAGCAAGTCAAAGTCTTCCACCATCTTGCTTGCTTAGTTGCAAAGAAAGTGATGAGGCA
AAAGCCAACAAGACCTACTCAAAAGAAAAGTGGGGAAAAAGGACGGGA
Left flanking sequence: Indices 145334 -- 145833
GGCACACTTTCTATATCTCCTCCGTCTACAAGGTGAACAGCTTAGCTTACAGCACAGCGTGTTCG
CCACCACACCGGCTGGCTGGTGCATTGGCCTTACCCTAATAGAGGCGAGAGGTATGACCCTTCGA
TTCGAACGCCCCATATTTCGTGCCACGCGGAGCGAGTTGCAATCGCGCTTGACTAGATCGAGCAT
CGCGTTTGAGAAACTCTGGCATGCATCAAGCTAGACGCAGCATTGGAACTCAATTAGATATGATG
TCGAGCCCAAGCGATGGGCCGTCATATGAGGACTCATAACTTAAGAATAAATATGTTATTGCAAC
AATCTAGCGTGATGCCAAATTAGATCAATGGGATATTTCTCCTTACATAGCATGCTCATGTCAGT
ATTTGCATTTTGCAAAAGAAATCTTTATTATGAAGAAAAGACTTTTTCAAAGATTATATATCAAT
TTTTGTATGAAACCGAATTAATTAACTTTAAGAAAATTCTTTGGT
Right flanking sequence: Indices 146107 -- 146606
TTGGGAGACTAGAGATTATTATTTACCGTGAAAATATTGTATAAATTTAATTTATAAATGATGTG
ACGAAGAAAATCAATCACAACATAATAATTGTACTGAAATTTATATTTTACGATGAGGGTTTGTA
TGGGTTTGCACGGTTTCTCTTAAGTGTTTTAATAAAATCTAGATGTCCGACAATGCTACGTAAAT
ACGCTACACATCAAACTCTTCAATTTGCCTATTGACTCCAAATAACTCATGTTGATCTAATAGCA
TACGTGGTAATGTTATTGTTCTATAATTATACTCGTTTTCCTTTAAATTGACAAGAGTGAGCCCA
AACAGATCACAGTCCATAAATGTGAATACACGAATATGCGATACATATAATTCTAAAGCTAGTCC
ATCATCAAAAGGTGAGTTGAAATTGATATGTGAAAGCTATCTGTTACTTAGCATAGCCAAGATTA
GCTACCTGATGAAGTTTGTCAAATTTTCATCTTTACTCGAATTCA
Found at i:146713 original size:102 final size:102
Alignment explanation
Indices: 146537--146740 Score: 399
Period size: 102 Copynumber: 2.0 Consensus size: 102
146527 TGAAAGCTAT
146537 CTGTTACTTAGCATAGCCAAGATTAGCTACCTGATGAAGTTTGTCAAATTTTCATCTTTACTCGA
1 CTGTTACTTAGCATAGCCAAGATTAGCTACCTGATGAAGTTTGTCAAATTTTCATCTTTACTCGA
146602 ATTCATAAAATCCATTTTCTTCTCCCCCTGCTTGCTC
66 ATTCATAAAATCCATTTTCTTCTCCCCCTGCTTGCTC
*
146639 CTGTTACTTAGCATAGCCAAGATTAGCTACCTGATGAAGTTTGTCAAATTTTCATCTTTACTTGA
1 CTGTTACTTAGCATAGCCAAGATTAGCTACCTGATGAAGTTTGTCAAATTTTCATCTTTACTCGA
146704 ATTCATAAAATCCATTTTCTTCTCCCCCTGCTTGCTC
66 ATTCATAAAATCCATTTTCTTCTCCCCCTGCTTGCTC
146741 TGCTTATGTT
Statistics
Matches: 101, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
102 101 1.00
ACGTcount: A:0.25, C:0.25, G:0.12, T:0.39
Consensus pattern (102 bp):
CTGTTACTTAGCATAGCCAAGATTAGCTACCTGATGAAGTTTGTCAAATTTTCATCTTTACTCGA
ATTCATAAAATCCATTTTCTTCTCCCCCTGCTTGCTC
Left flanking sequence: Indices 146037 -- 146536
AAGTGGGGAAAAAGATTCTAGCGATTGAAGGCAAGTCAAAGTCTTCCACTATCTTGCTTGGTTAG
TTGCATTGGGAGACTAGAGATTATTATTTACCGTGAAAATATTGTATAAATTTAATTTATAAATG
ATGTGACGAAGAAAATCAATCACAACATAATAATTGTACTGAAATTTATATTTTACGATGAGGGT
TTGTATGGGTTTGCACGGTTTCTCTTAAGTGTTTTAATAAAATCTAGATGTCCGACAATGCTACG
TAAATACGCTACACATCAAACTCTTCAATTTGCCTATTGACTCCAAATAACTCATGTTGATCTAA
TAGCATACGTGGTAATGTTATTGTTCTATAATTATACTCGTTTTCCTTTAAATTGACAAGAGTGA
GCCCAAACAGATCACAGTCCATAAATGTGAATACACGAATATGCGATACATATAATTCTAAAGCT
AGTCCATCATCAAAAGGTGAGTTGAAATTGATATGTGAAAGCTAT
Right flanking sequence: Indices 146741 -- 147240
TGCTTATGTTGTTCGTGTTTTTTTTTTCTTTTCTTTTTTTAGATTTAAATTAAATCCATCAGTTT
TGTGGCTCTAGATTCAATTTAGCACATATATTTAATTTACGGAATAATTCCTCCGTATTACGAGA
GTGCTATTAAAAGGAGTAACATGTAAAACTAATAAGATTTTGCCTTCTGTTGAGGGTGAAACCTG
TCATTTTCTGGCTTAACAAATTATGGATCCTTAGACTGATCTGGAAAAATCTGATTTAGCCGGCT
TTTATTGGATAGAAACCATATGAATTAAAGGCAACTCGGTGCTCTCTAAGTGTACTCCAGAGCAA
TATTAAGATAAATGGAATAACGTTGGATCTTTGACTCTTCCCTCTTTCATCGTTGACTGAGATGG
GACATCAACGACCCAAAATGGTAAAGAGCAAAAAGGAATAAATTCATTCACACCCATCATCTTAG
TACTACCAAATTTAAGACTTCGAAACGAGGTTGAGAATCTTGGGT
Found at i:147779 original size:29 final size:32
Alignment explanation
Indices: 147708--147780 Score: 82
Period size: 30 Copynumber: 2.4 Consensus size: 32
147698 CTCAATTGAC
* *
147708 AAATTGTCAAAAGGTTAAGGATTCAATTGGTA
1 AAATTGTCAAAAGGTTAAGCATTAAATTGGTA
**
147740 AAATTG--AAAAATTTAA-CATTAAATTGGT-
1 AAATTGTCAAAAGGTTAAGCATTAAATTGGTA
147768 AAATTGTCAAAAG
1 AAATTGTCAAAAG
147781 ATTTAGGGTT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
28 6 0.18
29 10 0.29
30 12 0.35
32 6 0.18
ACGTcount: A:0.47, C:0.05, G:0.16, T:0.32
Consensus pattern (32 bp):
AAATTGTCAAAAGGTTAAGCATTAAATTGGTA
Left flanking sequence: Indices 147208 -- 147707
TAAGACTTCGAAACGAGGTTGAGAATCTTGGGTTCTACTGAGCAATGAACAAAAGCAAAGGATCA
ACGCATGAAGAGAATAATGAAGATTGTATAGCTTCACCAACTTGTTTACCTTCACCAGCCAAAAG
ATTGAAGGGTCGACAGCAAAATGCAAGGAAAAAATCCAGAAGAAAACCATACGAGACCATCTATA
ATTTACAAGCATATACTATCCAGGAAACAATATGCGTGCCATTATAGGAAGGGCTGAAAGATTGT
CTTCAATGCGAAATAACTGTAGTCATATGTCATCTTTTTAACATCTAAAAACAACAATTTCATTC
GGCAAAATTTGCCAACCCTCTCATCAAGAGCATGGTATCCGAAAAGCACGTCACTCTCAAATGTA
CTTTTCATGCACGTGGCAAGATATTACATGTTGTTGTGCATCGCGACACTGAAAAATTGACTTGA
TCTCAACATAAAATTAGCAATTTTGGCAAGATGAACTCAATTGAC
Right flanking sequence: Indices 147781 -- 148280
ATTTAGGGTTTTTTGGACAATTTTTCCGAGAAAGATAAGGGAGAAGAAGATCAGAAGCTCCTCAA
ATTGGAGAGTTGCAAGCTGACAAGGACATTTAAGGGATCACATTACCTTCATCCACTAATCATAT
GTTAAAGACAGCCAAATGTCATTAGAATCAGCAACTACTGTCCTATTAGGCAATACTAACATTTC
AGCCTTCCCATTGTTCACATGAAGAGCACGGAGAATCATAATGAAACGAGAGAAAGCAGTGTACG
ATGATATACTCTTTAGTCAGTCATCATATGTGTCAAGCAGAACCATTTAAGGCTCCACTGCCTTC
AAAATCAGATCACCAAGTTTTGTATCTTCAAGCTAACTTTGAATGGTAGTTGCAGATCACTTCTT
TTAGGAACACTATTGGGGAAATTGAACATGTGAGCATCCAAAGGATCAAGCATTCCCTTGCGGTG
ATATATCCAGCAATCTGGTCATCCAATTTGGGCAAACTAGGCGAT
Found at i:148762 original size:72 final size:73
Alignment explanation
Indices: 148640--148785 Score: 179
Period size: 72 Copynumber: 2.0 Consensus size: 73
148630 AAACCAGTTG
* * * **
148640 AAAAGTGCATGACATACGGTTTCCTTCCATTAAACCAAGTATTGCAGTTTTTAC-TGAAAATGCA
1 AAAAGTGCATAACATACGGTTTCCTTCCATTAAACCAAGCAATGCAGTTTTTACATGAAAACACA
148704 GAAATGGT
66 GAAATGGT
* * * * *
148712 AAAATTGCATAACATAGGGTTTCCTTTCGA-TAAACCACGCAATGCAGTTTTTTCATGAAAACAC
1 AAAAGTGCATAACATACGGTTTCC-TTCCATTAAACCAAGCAATGCAGTTTTTACATGAAAACAC
148776 AGAAATGGT
65 AGAAATGGT
148785 A
1 A
148786 GGAGTGACTT
Statistics
Matches: 62, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
72 41 0.66
73 21 0.34
ACGTcount: A:0.36, C:0.17, G:0.17, T:0.29
Consensus pattern (73 bp):
AAAAGTGCATAACATACGGTTTCCTTCCATTAAACCAAGCAATGCAGTTTTTACATGAAAACACA
GAAATGGT
Left flanking sequence: Indices 148140 -- 148639
AACTTTGAATGGTAGTTGCAGATCACTTCTTTTAGGAACACTATTGGGGAAATTGAACATGTGAG
CATCCAAAGGATCAAGCATTCCCTTGCGGTGATATATCCAGCAATCTGGTCATCCAATTTGGGCA
AACTAGGCGATGTTGGAAAGCTCTTGCAATGCACAACTCAATTATAGCGATCAATCATAATATTA
GCAGGGGTTAACTTTTGATCAAAATCAAAGTCTAAACTTAGTGAAAAAAAAAAAATAGGTATCTT
CAAGGTCAACAGTCTTTAGTGAAATAATAAAATTGATTCACGTCCAATATGTGTTCGGATTGAGG
GAAGGGGAAAGAAAATGGGGGGTAGTAATAATCTAGGGACTTTTCTTTAGAGGCGGAGCAACAAG
GGGATGAACTTGATTTTCTAATCCCCGAAATAGTCAAATGATTCTTGTACGTCTTTCTAAGTTAT
ATTGAAAAACTTCATTAAATGCAGGAGTATTCTTCAAACCAGTTG
Right flanking sequence: Indices 148786 -- 149285
GGAGTGACTTACCTTTGTTCTTTTGGTCATAGACTTACCTTGTTTAAACGCTAAATAATCCAAAC
AGGCCAATTATATTTTTCCTTAGCTCCTGCACTTTCAGAATTAAGGGAAAAATTAAATTAACTTA
TGGCATCTTATTCTATAAAATTGGATCAAGCGTTGAATGGATTTCCAAGTTGATTGTTATTTTGA
ACATTCATCGAAATTGTTTAGATGGGGGAATTATTTCTAATATATAGCATATGGGCATGTTGGAT
TATGATATATAGATATTGGATTAGCGCTCATTGTCGAACTACGTATTGATATATGATATATGTTT
ACCGATGATTCTGATTTGGGGTTTAATCACAGTCGATGTGATTTATTAGGCTTTAACCATAGCCG
ATATAGTATTTGGGCCTTGTCACATGACGAAGAATGGTTAAGATTGGGCATTAGGGCATGCCGGG
GACGACACCACTTGGGCATTGTTGGTCTGGGCCTAGTTTAAAAAA
Found at i:151079 original size:20 final size:21
Alignment explanation
Indices: 151042--151081 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
151032 AATATCCTTT
151042 TGTAATTTTTCTTATGGAGGA
1 TGTAATTTTTCTTATGGAGGA
*
151063 TGTAATTTTTGTT-TGGAGG
1 TGTAATTTTTCTTATGGAGG
151082 GCATAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.20, C:0.03, G:0.28, T:0.50
Consensus pattern (21 bp):
TGTAATTTTTCTTATGGAGGA
Left flanking sequence: Indices 150542 -- 151041
TACCTATACACTAGCACAAGAACATAGGCAGCCCAATGGAAGATGAAAATCCCAAAACTAACCAA
ATGAATCTGCAAATCTATACAAAGCTACGACACACCATTTTGATTTGAACAAATTCCTCCATACT
CTTCGCAACTCAAAGCCGCCTAAGGATTGGCAAGGATTAGTCTAATGATCAACGATGACCAGATC
TGAAAGGAAAATAGACCTGATCTTGTCTAATTGATTGTGATTTTTTTTGGTATCAGTCATTTTTC
TCGCTAAAAGTAATCTCCTAGTAACATATCATCTTATAACTTTTTTAACACAACGTAATTTCCTT
TCTGTAGTCGTAAGCTCTGTAGGTCCTATAGTTTGTAATATTCCATTAAAAATTGTAATCTACCT
TATAGTAAATTTCTTTTCTTATCATTAGTAAATTATCGAATAAATCCTAACTTTTGTTCAGTGTA
CATAATCATCCTCACTATTAGTAATGTATTGGTAAAATATCCTTT
Right flanking sequence: Indices 151082 -- 151581
GCATAAATTTTTGGCGTCTGTGCCTTGTAATATTTCATAAAAGCAGTAATTTATTCGGTTAATGG
TAAATTTCTTTTTTGCATGTTTAATGAAATATCTGAATTTAGTAACTTTCCTTGCATTTTGTAAT
GTTTTGAGACTTATATATTGGTAATTTTCCTTACTCATCTTAATTTTTTTTTAATCAAATGAAAG
TTTGATCACTTTTGCATTCGTAACTTTTCTTTAACGTCTGCGAATTCAAATTATGACCAAAAGTC
AATTTTGCAAAAAAAATTTGACGGACCAATTTTTTCCCCTTCTTATCTAGCGGTCCACGTTGAAT
GCGGGACCAATCTCATAAAAGGAGAGCTTCGACTTGTGGAATTTCCATTGTGATCACGACGTTTC
GGCCACAACAAAAAAGTATTTTCTTTTTTGTGAAATAGTAAAGTAGTGTTGGAAACTTAATTTTT
CAAATTATTTGAAGTTCGTTCTTTCGAAATATATATAAAGGTAAA
Found at i:178868 original size:19 final size:21
Alignment explanation
Indices: 178826--178891 Score: 80
Period size: 21 Copynumber: 3.2 Consensus size: 21
178816 CGTGAGCGCG
178826 TTTTGTCCAAGTTACTTCTCT
1 TTTTGTCCAAGTTACTTCTCT
* *
178847 TTTTGTCCAAGTTTCTTCTTT
1 TTTTGTCCAAGTTACTTCTCT
* * *
178868 TTTTGTCTAACTCACTTC-CT
1 TTTTGTCCAAGTTACTTCTCT
178888 TTTT
1 TTTT
178892 TCTTTGTGAG
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
20 5 0.13
21 33 0.87
ACGTcount: A:0.12, C:0.23, G:0.08, T:0.58
Consensus pattern (21 bp):
TTTTGTCCAAGTTACTTCTCT
Left flanking sequence: Indices 178326 -- 178825
GATTCTTTTTTACCCCCAATACATCTTGCATGCATATAGTCTCATTAAATGAAAGATTTTGGATG
TCAAATTTGAATCGATCAACATGGATTCCTCCTTACTGCCCAGAGGAGAAGGTTTAGGTAGGGAT
GACAGGATTGGAACCCGTGACATTTTTTACCCAAAACAAGGGCGCTACATCCCTTTCAATTGGTC
TACGGTGTCATTGTAGAGAATCCCTGCCCTGTTTTCCACATGGTTATTTCCTCTATCGATATCCA
ATTTCTCTTGCCATTTCTTCTTTTTTGTCTTTATTGATTTATATATATACTCATCATCATCCCGC
CGCTCCTACCAACGCTTACTTCCTTATGAGAAAAAAGGGTGTTAAATAATCAGCCCTTTGAATAA
GCGAGGCTTTCCCGATAGAAAGAGTTGCATGCGAGAGAGATCCCAATTCCGTGTATGCGGTTAAG
CAAGCCCTGCCGCCAGCTTCCACCCAGACAAAAAACGTGAGCGCG
Right flanking sequence: Indices 178892 -- 179391
TCTTTGTGAGTTTCGGGAATACCCCCATTCATAGGTCCGAGATCCACGTCTATGAATTGAAAGGT
CCGAATGATCAACTCTGCAATCAGTTGTTAGAATCAATAGGTCTTCAAATCGTTCATTTGAAAAA
ATGGAAACCATTATTATTGGATGATCATGATACTTCCCAAAAATCGAAATTATTGATCAATGGAG
GAACAATATCACCATTTTTTTTCAATAAGATACCAAAGTGGATGATTGACTCATTCCATACTAGA
AATAATCGCAGGAAATCTTTTGATAACACGGATTCCTATTTCTCAATGATATCCCACGATCAAGA
CAATTGGCTGAATCCCGTGAAACCATTTCATAGAAGTTCATTGATATCTTCTTTTTATAAAGCAA
ATCGACTTCGATTCTTGAATAATCCACATCACTTCTGCTTCTATTGTAACAAAAGATTCCCCTTT
TATGTGGAAAGGGCCCGTATCAATAATTCTGATTTTACATATGGA
Found at i:188601 original size:24 final size:21
Alignment explanation
Indices: 188574--188617 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
188564 TATGAATGCT
188574 TTCCTATTCAAGACATACTACCAA
1 TTCCT-TTCAAG-C-TACTACCAA
*
188598 TTCCTTTGAAGCTACTACCA
1 TTCCTTTCAAGCTACTACCA
188618 CTACCGAAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 8 0.42
22 1 0.05
23 5 0.26
24 5 0.26
ACGTcount: A:0.32, C:0.30, G:0.07, T:0.32
Consensus pattern (21 bp):
TTCCTTTCAAGCTACTACCAA
Left flanking sequence: Indices 188074 -- 188573
TGGGAGGGCCATGGGAAATCCACTTCGTACCTTCGTATCTATAATCTAAACACTTCTCACCTATG
TGCCTTCTTTACTTCCCGGCTCTTGCAAGAGCCACAGTGACTGCAACAAGAGGAAAGCCACCTCA
CCTTAATCAGTCAAGCAAGCTATTTGAATAGGGATTATGAACAGGCCCTTACCTTGGCCTTAGCC
GTTCGATTGATTGTTCTAAAGTCGAAGTCGTTTCGTTAAGTCGAATTGAAAGGTAAGTTTTGTCA
GTGATTAAATGGAAAGGGGGAGCGGTTCGGTCCTACTCTTGAACTTTTAGGCTAATTAAATGAAA
AGCCGAAACAAAGGCCAAATATCGGCATGTAACTGAGAAAGATGGGATTCGGTCAACAAAGGAAA
TTAAAACACTCCCTTCTTTCTATCGACAATGATGAAAACCAGAAAGTCAAGCCTTTCACTTCATT
GTTCAAGCTCTTGAACATGGGTTGAGTTCATACATTATGAATGCT
Right flanking sequence: Indices 188618 -- 189117
CTACCGAAGCTGGCTTGCTTCTTTTGCTTACCGGTTGGTTGGGGTTTTGAAACCAGAGAAAGAAG
ATCCGGTTGGGCTTTCTAGCGATGGGAGATTAGTCACCGGAAGACTTGCTGGCTAGCTCGTGCAA
TCAACGATAAATTCCGTCGCCTTAGTAAGCTAGCTTTGGTTGCTAAGCAAGCCTGGTTCTCCGGG
CACTACGGTAGCACGTGGATCGATCATGACGAGAATGGACTTATCCGTAATGTAATGTAATAGAG
GAGTCACAGTCCAGTTCCCCCTCCCTTCTCGACCAGACGAAGGAGATATGAATTCCATTCAGGCG
GGTAAGGGCTTGGCTTGACCCTGTGTCCTCTCCTGGTCGGGTCGGAGGCGAAGACTGGCAAAGTT
CATCATTCAGCGGTGGGGTCTTCATAGAAAAGAAGGCCTCGCCCAACGAATGGCAGATTTGGATG
GAGTCTCGCTCATAGATAGAGGAAGAGTACGCGCGCTAGCGCGCT
Found at i:238168 original size:15 final size:16
Alignment explanation
Indices: 238144--238177 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
238134 CTTCTTTTGC
238144 CCCTTAGTGTTCT-AT
1 CCCTTAGTGTTCTGAT
*
238159 CCCTTTGTGTTCTGAT
1 CCCTTAGTGTTCTGAT
238175 CCC
1 CCC
238178 CTTAATATTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.09, C:0.32, G:0.15, T:0.44
Consensus pattern (16 bp):
CCCTTAGTGTTCTGAT
Left flanking sequence: Indices 237644 -- 238143
GAATTCCATTCTTTTCTTGAATTTTGGAATAGAGTCAAGGGAGAATGCCGCTTTAAAAAAAAACC
GAGTTCCCGAGAAATCCGTCAATAAATAACGACTCTTATCCTAGGTTTGAAACTCGGTCTGCTTG
CTCCTACAAAAGCTCATACGGGGTGTCTCCTACTCCTCTCCGGGGGCTCGCTCCGCTCTATGCCC
AAAGCTTCCACTCAATCACAGAGAGGTCAACCCATTGCCGATACTCAATATGCTGGTCCGGTTAA
CCCCAACCTCCCCCACATGAACGAACGAGCGACTCGCAAGACTCGAACTAGCATAGGCGGATCGG
ATCCAAATTAGCCTATCTTCCGTCAACAGGAGTCGCTTTGGTGACGCAGTTCGGTTGGCGAGGGA
AGCCTTCCTACGTCTGCACTTTATACCGTCTTTTCTTTTTATTTCATGGTTATATAAAGAAAGGG
CTCATCTATTCTCTTTCCCTTTTAAGTTTGGGATCCTTCTTTTGC
Right flanking sequence: Indices 238178 -- 238677
CTTAATATTGCTAAACATTCCCTCGAGACTTTTGAATGTGCTAGCTTTTCCGTGTTTGTTGATTC
TATTCTCCCTCGTTTTTGTTGGGTGAACCCCAACACATTTTTGTATATATTTCTTTCCAACTAGA
GCCCTTTACCGTCTCCTCCTTTCTTGGGGGGGCAGAGCATTAAATTTAGACATTCAAGAATGTTC
GCGTCGTACGCAAAATCGTTCTTGTCTGCTATCCGCTCCCGATTTTTTTCTTGTCAAGATTCTCC
CTCCGCTTGGGAATCAGTGTCGGGTACATAACATAGAAGGGTCAGATCGAAAAAGAAAGGGTACA
TAGAGGGGTAAGAAGTAGCGACGAGTGAATCAAAAGTAGCAAGTTTCTTCCGTAGCCTTTCGAAG
TCACCCGCAATGGCTCTGATAGTTGAATTTTTTGTTATTTCTCAAAGGGATCCCTCTTATGAGCC
TATGGGAGAAGACTGGGTAGAAGAAGCTTTTAGCCCCTGCTTGTT
Found at i:246128 original size:19 final size:20
Alignment explanation
Indices: 246094--246131 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
246084 GGTGCACCCC
246094 CTTCCCTCTACCCTCCCACT
1 CTTCCCTCTACCCTCCCACT
*
246114 CTTCCCTC-CCCCTCCCAC
1 CTTCCCTCTACCCTCCCAC
246132 CTCCCATAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.08, C:0.66, G:0.00, T:0.26
Consensus pattern (20 bp):
CTTCCCTCTACCCTCCCACT
Left flanking sequence: Indices 245594 -- 246093
ACCAAACGTCTTTCTGGTTTTTGGTCTCTATCCATTTTTTCACTCCTATCCATCACTAGCGATAT
AGTATAGATAGAAGTGTTCGTTTTTCTTAGTAGGGGGATAGAGCCGCTTATGGTTTCCCTCCCGT
CTAGCTAACCTCGCTCTCGTACAAGGAGAGGAGGTTAGCTAGTACTATAGCTCATTTCCTTCTTA
TTCGTCCCCTACCGCGCCTATCGCCGAAGGCAGGGTTGATCCACTAACTTGATTTCAACAAGCCA
GTCGCGAGTAGTAGCTATTCAGAGCCAAGGATTGATAGAGTAATTGAGTTAGTACGGATTTTCAT
TCACATTCAATGAGCTTATTAGTTGGGAAAGAGGGAGCTAACTCCAAGACCTCTCCTTCCACTTT
CCAATCCAATTTTTTTGAATCTATGCATAGTATTCCACTCGAAGCGCCGCTCCGGTTTGAAGGAT
GCATTCATGCGTTCTAGCCCGTAGTTCCAATCTATGGTGCACCCC
Right flanking sequence: Indices 246132 -- 246631
CTCCCATAGGATCCTTACCTGGCGAGGGGGTTTCTAAGAATACACTTACTTGGATCTTCAAGCTA
AGATGCTAGAAGTGATAACTCAAGCTGAAAACCTGAACTAGAATGAATGAGGATTCTTATTTGAA
GGAATGAAGTCAAGCTAAGGTTTCCAAGCAGAGGTAGGAAGGAGTGCCATCTGTTTAATCGGAAT
AATCCGGTTCACCACCCGCGGAGAAGGTCTTCTGTCTGTTCTATACTATTAGTCACTGTCGACTT
GAACTTGAGGATCACAACTATATGCTTATCTGGTGGATGCGCGTCTTGGGCTAACTAGAAATATC
GTAAGAGAATAAAAAGAATCTTACGCCTAAAATTCCCATGTCTTTTTTGGTTGGACTAACCTAAC
CGGCGATTTCTGACAAGTCTTTCTTCATTTTTAGAGAAAGGAGCGAAAGCAGCAAGCATATAAAC
AACAAGAAGGAGGAGCGCAAGCCTTTTTCACAGAAGAGGATCTTT
Found at i:255746 original size:22 final size:22
Alignment explanation
Indices: 255718--255763 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
255708 GCTGTCTGCG
255718 CGAGTCACCTTCTTCTAGGCTC
1 CGAGTCACCTTCTTCTAGGCTC
255740 CGAGTCACCTTCTTCTAGGCTC
1 CGAGTCACCTTCTTCTAGGCTC
255762 CG
1 CG
255764 CTGGACGACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.13, C:0.37, G:0.20, T:0.30
Consensus pattern (22 bp):
CGAGTCACCTTCTTCTAGGCTC
Left flanking sequence: Indices 255218 -- 255717
ACAGCCAGCTGAAGTTAGCTAGCTAGGCTAGCGCGCAATGGCTTTCTCTGAAAGGGGCTCGCTTC
TTCAAGCTCCGCCCAACCTATACAAGGTGCTGCTCGCTTTCTCTCAGCCACTAGTGGCTTATGGA
GTGGTCGGCATTCCTACGTGCTCCTCCTTGCCCCCCTACTTAAGAATCCAAAGGTGACCTTTGGA
TGTTGTCGTGACGCTTTGGTTACGAAGGTTACCGGGGTCTAGGTTTATGGATGGATTCAGTCAGC
GAAAGTCCCTCAAACTCAATCAATATCAACAAGATGTCGTGACCGGTTAGGCTTGGTTGATTTTG
TCAGAAACGAAAGTAGGTTTAGGGGCTTCATTGATTAGTACACCTCCGGTGCTGGTAAGGACGGG
ACCGTGGTCGTCCGTCTCCGGTTTGCCGGCCGATAAGATCTCTGAGATTGACCAGCCAGCTGGGT
TGGTTTGGCTATTCCTTTCTATTGAAAAGGAGTCAGCTGTCTGCG
Right flanking sequence: Indices 255764 -- 256263
CTGGACGACACGGCATTCTCGTTCAAATATAGGCCAGCCATACTTGTGATGGTTCCCAAGGATCC
AATATGACCACTTAGGTCTACGTTGCCACGATATTGTTCTATGGAAGCGGGCGGGCTGTTAGAAG
TTCGGCCCGGTTTTTTTTGGTGTCGTAGGGCAGGGATTGACCTTTCTAACGCATATTCAGTCGTA
CCGGCATGGCCCCACTGATTTGTTTTCGATCGGAGCATCAAGCAACGCAACCCGGTTCTACTTGA
CTAAGCCCCGTGCTCGTCCAAGGAGGGAGGTTGCTTTACCCAACTCCTTTTTTGATAACAGGGCA
GAAAGCCCCGACCCGACATTCATTAGTTTCGAATGAAGAATGAAGAGTGCCCTGCCCAAAAAAGA
AAAAGCACCTACTCCTATCAAAATGAAAAGCGTGACTTTACTAAACAGGCAAGAAAAGGCCTAAC
TATTCTATTAGTAAAGCGCTAACGCCCTATCTATAGTCAGGGGCC
Found at i:289949 original size:15 final size:15
Alignment explanation
Indices: 289931--289977 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
289921 CCCTTTTCTG
289931 TATTCTATTTTTTTT
1 TATTCTATTTTTTTT
**
289946 TATTCTATTTTTCAT
1 TATTCTATTTTTTTT
*
289961 AATTCTATTTTCTTTT
1 TATTCTATTTT-TTTT
289977 T
1 T
289978 CTCTGAGACT
Statistics
Matches: 25, Mismatches: 6, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
15 23 0.92
16 2 0.08
ACGTcount: A:0.17, C:0.11, G:0.00, T:0.72
Consensus pattern (15 bp):
TATTCTATTTTTTTT
Left flanking sequence: Indices 289431 -- 289930
AGAGGTGGATAGATAGGACTACTAGTTGCTCGATCAGGACCCTAGCTTTATTGCGAGCCAAAAAC
CTTGATGGAGGGGGTTAAACATGACTCCTAGAGAATTACCAAAATACGAAGTTCTCTTCTCCTTT
CGTTCCTTTCTTTCTTTTTGATAGTTGGTTGGCAGGGTCAGGGCCTTTCTCGCTGGGTGAGCGCA
TCCGATTCGAAAGTCCTTTCCTAAACCACTTCCCGTTCAGTTTCTGAAAGATAGAGATAAGCTTT
CTAAATGAGATGGAGTTCCACGAATATGCAGGCTAGAAAGATGTTATTAGCAGCTGTAGTAACCT
TTCTAAATATCCTATCCGCCGTTCTTTTTAGACGGTGTCTGGGATCCGAAGAGATCGCTATAATG
CCCACTGGTATTCATCTCGTACTTTTTGGAGCATTTCTTTTGTTAGTGATATTACTCTTTCATCA
TTATTCTTTTCATTTGAAAGAAAAGTACGGCTTTCCCCTTTTCTG
Right flanking sequence: Indices 289978 -- 290477
CTCTGAGACTTTACTTTCTCTTGAAAGTGGGTCTTTTCGTGAATCAACTGTTAGTTGTTATTTTC
GGTGTGGGGACCGTCATGACTGCCGAGACACAATACGGTACCATGATGATGGCCTCCTCGGGAGA
TTCGGGCTCGTCCAACTCTTCCTCGTGGACGGGGAAGACTTCCTTCGAGGAGCGGGTGCTACAAG
AGCCTTGGCCAGTTACCCACAATAGGGGGTTCGAGGCGTCCATGCACAACCGAATTTCTTTCTTG
GAAAATAAAGGAAGCATTTTCCTCCTTGATAAGGACAAAGGGGTCTATTGGTCCGAAATCAAAGC
GCTACTCGAGAATTGTTCCTCTCAGGGGGAATATAATCGATTACTCGACTTTGAGAATCGAGATC
TACAGATCCGCGAAGGCAAACATGAAAGCTATTCGATCTTGAAGGGTATCCTTGCTCAACATCCT
GCCTTAGAGAAGAATGCGGCTTACAATCCGGAAGAAGCATTCGTG
Found at i:305041 original size:42 final size:42
Alignment explanation
Indices: 304982--305070 Score: 178
Period size: 42 Copynumber: 2.1 Consensus size: 42
304972 AGGGAGGGTC
304982 TGATTAGATGGACCTGCTTCGGGCTGACTGGTCCCCTCACTT
1 TGATTAGATGGACCTGCTTCGGGCTGACTGGTCCCCTCACTT
305024 TGATTAGATGGACCTGCTTCGGGCTGACTGGTCCCCTCACTT
1 TGATTAGATGGACCTGCTTCGGGCTGACTGGTCCCCTCACTT
305066 TGATT
1 TGATT
305071 TTCTGATGAT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.15, C:0.27, G:0.26, T:0.33
Consensus pattern (42 bp):
TGATTAGATGGACCTGCTTCGGGCTGACTGGTCCCCTCACTT
Left flanking sequence: Indices 304482 -- 304981
CCATTCCACATATATACTCTCAAAAAATGGGGATCCAAGTCAAGACAATCAATGGAAACATCAGT
TCCAGACACTACAGCCGGTGCCCGAACTGGCTCGGGAACTAAGCTATGGAGTCATCATCATCGAG
ATCGATCTTTCTCTTTAATGCGACCTTCTTTTTTAAGGCATTAAAGGTATGGGAGTGAACGCCGT
TTTGGCGTATCTCTGCTAATTGTTCATGTAGCTTTTGGAGGGATGCTTCGCCAGTGGCGGTACGA
GGATTATCCAGCGCTCGCGCACCCCGTCCCAGCCAATCTCCCGTTGGATCAAGGACGGCCATTTC
GCGGATAATGTCCACTTTGACTTCGAAAAGGTCTTGGGCCGTAAGATGGGCCATTTGGATGTCGT
GGGAAGTGGGATTTCTCGTTTTTGATAACAGGCGTCGCTGAATCGAGCGAACGCAATCGCCCCCG
ATTTCTTCATCCGATTGATACGGATAGGGGACCACAGGGAGGGTC
Right flanking sequence: Indices 305071 -- 305570
TTCTGATGATGTCGTCTCGAGCAGGAAGTCGATGTCCCACTCCTCCCAATAATTTTTGGAGGCCG
AAGAGTTTCCCCCAGACTCCGACGGATTCATCATATTTGCTTCGACCCCCGAAGTGAGAAGAGCT
TTCACAGCCAATCCAATGGCCAAGGAAAGCCCAGGGGAGCATCCCAGCTTTAGCAAAAAAAGCGA
GATCGCTCTCCCACTTAGCGAGAAAGCTGTTGTACCCAACATGGAACAAAAAAGATTCATGGCAC
CTAAAGACAAACAAACGAAATATAAAAGACGGATCAAGGTCCAAATCATGAGAAGATCAAAGATA
TATTTTACTAACACAGCATATAAGCGTCGACGAATAGTCATGATATTCTTTTTTTTTTTTCCCTT
TCTTTAGAGACTTCGGACTCTTTCCCTCGTCCTAAGCTCAAGGCCTCCGGTTACCTTTCCTTTTT
CCTTTGCGGACCTCCGCTGCGGGCTTTTGCACAGGGTTACTTACG
Found at i:310281 original size:59 final size:59
Alignment explanation
Indices: 310189--310309 Score: 242
Period size: 59 Copynumber: 2.1 Consensus size: 59
310179 TAGATGCGGA
310189 ATCATTAGTAAGGGCATGGCTTAAGACAGCTCTTGACCGAGGGTATGACATCGCTCTTC
1 ATCATTAGTAAGGGCATGGCTTAAGACAGCTCTTGACCGAGGGTATGACATCGCTCTTC
310248 ATCATTAGTAAGGGCATGGCTTAAGACAGCTCTTGACCGAGGGTATGACATCGCTCTTC
1 ATCATTAGTAAGGGCATGGCTTAAGACAGCTCTTGACCGAGGGTATGACATCGCTCTTC
310307 ATC
1 ATC
310310 TTTCTTTGTC
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 62 1.00
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (59 bp):
ATCATTAGTAAGGGCATGGCTTAAGACAGCTCTTGACCGAGGGTATGACATCGCTCTTC
Left flanking sequence: Indices 309689 -- 310188
TTACTCCAAGAGCGAGTAGCCCTTTATGAAATAGCAGCGGAGGCGTGAGCAGCAAAAGCCTCTTC
TACTGTTCCTGACCCTCACCCGAGAGAGGGGAGGAGCTTCCTTGAGTTGAGAGATGGGTTAACAA
TGCTAATGGTTTTGTCTACCCTTTCTTCTGATTGATATCCGGGAGTCACTGAACTTAGAATAGTG
AATCCAGTTCAAGCAGAATCATAAGAAGAAGCCCTTGTTGGAGTTGTAGGAAGAAGTGCTGCAAG
AATGGCTATTTCCGCTCTTGGAGGAGCGATATTTTACTACTAAAAGACAAGGCAGATAATGGATT
AAAGAATGTTCATTTTCTAAGTAAGAAAGCCTAAAATAAGAAGAACGAAGAAGGGCTTCCACTAC
ACGGTCAGTAATAGAAGAAGGAGCAAAGAGTCTGCTGTAGCTTGGCCCCTCCTTATGCTAAGTCA
GATCCAAAGTGCAGTGCCATTCAATGATTTAGCTGTAGATGCGGA
Right flanking sequence: Indices 310310 -- 310809
TTTCTTTGTCGGAATTGGCTTTGAAGGAAAGGACTTCTTTATTCTAACATAACTCTTTCCAGATG
CCAAGAATCTCACTCCTTTCAGAGCTGTAGGAGTGCCGCAACCATTCTTTCTGAGTGATTCCCCG
GTAGCAAAGGAAGTAGCAGCAGTGCTATATAGAACTGCTTTTCTTAAGTAAGGAATTGATAGAGA
TAATTGACCTAGCTAGCTATAGTCCGTCTCTTCGAACTGTCTAGATTCACTCTTAGAACTGTCTA
GATTCAGTTGGTCTTCTGTCTCCTGACGACCGTGTATTCTATCGGCCATCTATCTTCCTCCGATC
GGCGACATTTTTGCTTGCCTATCATTATGTCTGGGCTACTCCTCTTCCGACGAGTTCCATTTCTA
GGGCGGGACAATTCTTCTAGCAGATCACTCTTCCGCTTACCACCGAAAGTCACGAATATAAGGAA
ATGCCATGCTTCCAGCTAAGAAATGAAAGTCATCGGGACCCGACG
Found at i:310563 original size:22 final size:22
Alignment explanation
Indices: 310532--310575 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
310522 TATAGTCCGT
*
310532 CTCTTCGAACTGTCTAGATTCA
1 CTCTTAGAACTGTCTAGATTCA
310554 CTCTTAGAACTGTCTAGATTCA
1 CTCTTAGAACTGTCTAGATTCA
310576 GTTGGTCTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (22 bp):
CTCTTAGAACTGTCTAGATTCA
Left flanking sequence: Indices 310032 -- 310531
AAGTAAGAAAGCCTAAAATAAGAAGAACGAAGAAGGGCTTCCACTACACGGTCAGTAATAGAAGA
AGGAGCAAAGAGTCTGCTGTAGCTTGGCCCCTCCTTATGCTAAGTCAGATCCAAAGTGCAGTGCC
ATTCAATGATTTAGCTGTAGATGCGGAATCATTAGTAAGGGCATGGCTTAAGACAGCTCTTGACC
GAGGGTATGACATCGCTCTTCATCATTAGTAAGGGCATGGCTTAAGACAGCTCTTGACCGAGGGT
ATGACATCGCTCTTCATCTTTCTTTGTCGGAATTGGCTTTGAAGGAAAGGACTTCTTTATTCTAA
CATAACTCTTTCCAGATGCCAAGAATCTCACTCCTTTCAGAGCTGTAGGAGTGCCGCAACCATTC
TTTCTGAGTGATTCCCCGGTAGCAAAGGAAGTAGCAGCAGTGCTATATAGAACTGCTTTTCTTAA
GTAAGGAATTGATAGAGATAATTGACCTAGCTAGCTATAGTCCGT
Right flanking sequence: Indices 310576 -- 311075
GTTGGTCTTCTGTCTCCTGACGACCGTGTATTCTATCGGCCATCTATCTTCCTCCGATCGGCGAC
ATTTTTGCTTGCCTATCATTATGTCTGGGCTACTCCTCTTCCGACGAGTTCCATTTCTAGGGCGG
GACAATTCTTCTAGCAGATCACTCTTCCGCTTACCACCGAAAGTCACGAATATAAGGAAATGCCA
TGCTTCCAGCTAAGAAATGAAAGTCATCGGGACCCGACGACATCCGCGCCTCTTGCAATGGATGA
AAGGTATCCGAATCAAAATGGAATTCAAAATACGTGGGTTCCTCCAATTCATATCTTTTTTTTTT
TCTCTGGGAAAACCTTCCAAAAAATGAAAGATCAGTTACATCCCAGCTTATTCTATTAAAGAAAG
ACCGGTGACATCCGGAAAGTTCCCCTTATCTTGATTCCTTCTATTTTATTTAAGGGCAATAAAGC
TGACTCTGACTATTGACGGTGAAAGAGATTTCATATAAAGAGGGA
Found at i:313986 original size:74 final size:74
Alignment explanation
Indices: 313865--314016 Score: 304
Period size: 74 Copynumber: 2.1 Consensus size: 74
313855 GCAATCAATA
313865 GGATTTTCCTAATCCTCCCTTCCCGAAAGGAAGAACGTGAAATTCTTTTTCCTTTCCGCAGGGAC
1 GGATTTTCCTAATCCTCCCTTCCCGAAAGGAAGAACGTGAAATTCTTTTTCCTTTCCGCAGGGAC
313930 CAGGAGATT
66 CAGGAGATT
313939 GGATTTTCCTAATCCTCCCTTCCCGAAAGGAAGAACGTGAAATTCTTTTTCCTTTCCGCAGGGAC
1 GGATTTTCCTAATCCTCCCTTCCCGAAAGGAAGAACGTGAAATTCTTTTTCCTTTCCGCAGGGAC
314004 CAGGAGATT
66 CAGGAGATT
314013 GGAT
1 GGAT
314017 CTAGCCGTAA
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 78 1.00
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (74 bp):
GGATTTTCCTAATCCTCCCTTCCCGAAAGGAAGAACGTGAAATTCTTTTTCCTTTCCGCAGGGAC
CAGGAGATT
Left flanking sequence: Indices 313365 -- 313864
AGCGCGCCCCTGATAATTGCGTCGTTGTGCCTGGGCTGTGAGGGCTCTCAGCCACATGGATAGTT
CAATGTGCTCATCAGCGCCTGACCCTGAGATGTGGATCATCCAAGGCACATTAGCATGGCGTACT
TCTCCTGTTCGAACCGGGTTTGAAACCAAACCTCTCCTCAGGAGGATAGATGGGGCGATTCAGGT
GAGATCCAATGTAGATCCAACTTTCTATTCACTCGTGGGATCCGGGCGGTCCGGGGGGGACCCCC
ACGGCTCCTCTCTTCTCGAGAATCCATACATCCCTTATCAGTGTATGGACAGCTATCTCTCGAGC
ACAGGTTTAGGTTCGGCCTCAATGGGAAAATAAAATGGAGCACCTAACAACGTATCTTCACAGAC
CAAGAACTACGAGATCGCCCCTTTCATTCTGGGGTGACGGAGGGATCGTACCATTCGAGCCTTTT
TTTTTCATGCTTTTCCCGGAGGTCTGGAGAAAGCTGCAATCAATA
Right flanking sequence: Indices 314017 -- 314516
CTAGCCGTAAGAAGAATGCTTGGATGATAAATAACTCACTTCTTGGTCTTCGACCCCCTCAGTCA
CTACGAACGCCCCCGATCAGTGCAATGGGACGTGTCTATTTATCTATCTCTTGACTCGAAATGGG
AGCAGGTTTGAAAAAGGATCTTAGAGTGTCTAGGGTTGGGCCAGGAGGGTCTGTCTCTTAACGCC
TTCTTTTTTCTTCTCATCGGAGTTATTTCACAAAGACTTGCCATGGTAAGGAAGAAGGGGGGAAC
AAGCACACTTGGAGAGCGCAGTACAACGGAGAGTTGTATGCTGCGTTCGGGAAGGATGAATCGCT
CCCGAAAAGGAATCTATTGATTCTCTCCCAATTGGTTGGACCGTAGGTGCGATGATTTACTTCAC
GGGCGAGGTCTCTGGTTCAAGTCCAGGATGGCCCAGCTGCGCCAAGGAAAAGAAAAGAATAGAAG
AAGCATCTGACTCCTTCATGCATGCTCCACTTGGCTCGGGGGGAT
Found at i:319839 original size:16 final size:16
Alignment explanation
Indices: 319818--319849 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
319808 ATTCTGAATT
*
319818 CTTTAATTCGAAATGA
1 CTTTAATTCCAAATGA
319834 CTTTAATTCCAAATGA
1 CTTTAATTCCAAATGA
319850 ATCAAATCTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.38
Consensus pattern (16 bp):
CTTTAATTCCAAATGA
Left flanking sequence: Indices 319318 -- 319817
GGGTCTTTTGTCGAAATTAAATGGCCTTCCTTTTTTCTTTTTATTTATTATTTCTCGTTAAGGGC
TGAAAAATGAAATAGAGTATGCCCCGGCATATTTTTTTTTGTTTTACGCCCCGTAACTCTTCCTC
AGCCAGGCTTGGTCAAAATAGCAGAGCAAGTCAAAATATTAATTAGTAGCATAGCAAAAATGCGT
TCCTCGTCATTAATATGTTTGCTCGCGGTAATTGTGGCCTCGCGGGAGAATCGATAACTGCATCT
TTGATGCACTTGCTAGTACTAGTACATCTGAGAATTCTTAATTGGCTAGTTGTAAATAGCCCCAC
CCCAGGACTATGGAACAAAGGGTTATCCCGGACCTACACCGAGATATTGACGGTGATTCTCAAAT
ATCGAAGAACAGAATGTGATACGATGAGATAGAATGCAATAGAAACAAAGACACAGGGAACGAAC
GGGTTCCCTACTCTTAACGGTCAACGAACCCTTTCATTCTGAATT
Right flanking sequence: Indices 319850 -- 320349
ATCAAATCTCCCCAAGTAGGATTCGAACCTACGACCAGTCAGTTAACAGCCGACCGCTCTACCAC
TGAGCTACTGAGGAACAACGGGAGATTCGATCTCATAGAGTTCAATTCCCGTTCTCAACTCATAA
CCAATATGAGCTCGAAGTTTCCTTCGTAACTCCCGGAACTTCTTCGTAGTGGCTTCGTTACATGC
CTCATTTCATAGGGAACCTCAAAGTGGCTCTATTTCATTATATTCCATCCATATCACAATTCCAT
TCATTTAATATCCCTTTGGTGTCCATTGACATAAGAGATGTCGTTTCTAGTCTATATCTTTCTAT
TTCTATATATGGAAAGTTAAAAAATCATCATATAATAATCCAGAAAAGAAATCGAAATAGAAAAG
AAAAAAGGGAGGTTTGGGATGATTTTGAAATCTTTTCTACTAGGGAATCCAGTATCCTTATGCAT
GAACATAATAAATTCGGTCGTTATGGTCGGACTCTATTATGGATT
Found at i:320879 original size:18 final size:18
Alignment explanation
Indices: 320858--320893 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
320848 AAATAATTCT
320858 ATTCGATCGAATAAGTAC
1 ATTCGATCGAATAAGTAC
320876 ATTCGATCGAATAAGTAC
1 ATTCGATCGAATAAGTAC
320894 CTTGTGTCAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.28
Consensus pattern (18 bp):
ATTCGATCGAATAAGTAC
Left flanking sequence: Indices 320358 -- 320857
CATTCTCCATAGGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTTCTGGAAGAAGGAGAAGAA
GGAACCGAGAAGAAGGTATCAGCAACAACGGGTTTTATTGCGGGACAGCTCATGATGTTCATATC
GATCTATTATGCGCCTCTGCATCTAGCATTGGGTAGACCTCATACAATAACTGTCCTAGCTCTAC
CGTATCTTTTGTTTCATTTCTTCTGGAACAATCACAAACACTTTTTTGATTATGGATCTACTACC
AGAAATTCAATGCGTAATCTTAGCATTCAATGTGTATTCCTGAATAATCTCATTTTTCAATTATT
CAACCATTTCATTTTACCAAGTTCAATGTTAGCCAGATTAGTCAACATTTATATGTTTCGATGCA
ACAACAAGATGTTATTTGTAACAAGTAGTTTTGTTGGTTGGTTAATTGGTCACATTTTTTTCATG
AAATGGGTTGAATTGGTATTAGTCTGGATACAGCAAAATAATTCT
Right flanking sequence: Indices 320894 -- 321393
CTTGTGTCAGAATTGAGAAATTCTATGGCTCGAATCTTTAGTATTCTCTTATTTATTACCTGTGT
TTACTATTTAGGCAGAATACCGTCACCCATTGTTACTAAAAAATTCAAAGAAACCTCAGAAACGG
AAGAAAGGGGGGAAGGCGAGGAAGAAACAGATGTAGAAATAGAAACAACTTTCGAAACGAAGGGG
ACTAAACAGGAACAAGAGGGATCCACCGAAGAAGATCCTTCTCTTTTTTCGGAAGAAAAGGAGGA
TCCGGACAAAATCGATGAAAGGGAAGAGATCCGAGTGAATGGAAAGGAAAAAACAAGGGATGAAT
TCGGAAGAAAAGGAGGATCCGGACAAAATCGATGAAAGGGAAGAGATCCGAGTGAATGGAAAGGA
AAAAACAAGGGATGAATTCAACTTTCAAGAGACATTCTATAAAGATAGCCAAGTTTATAAAACTT
CTTATATGGATGGGAATAAAAATCTTCTCTTTTTTCGGAAGAAAA
Found at i:321273 original size:82 final size:82
Alignment explanation
Indices: 321136--321302 Score: 334
Period size: 82 Copynumber: 2.0 Consensus size: 82
321126 CTTCTCTTTT
321136 TTCGGAAGAAAAGGAGGATCCGGACAAAATCGATGAAAGGGAAGAGATCCGAGTGAATGGAAAGG
1 TTCGGAAGAAAAGGAGGATCCGGACAAAATCGATGAAAGGGAAGAGATCCGAGTGAATGGAAAGG
321201 AAAAAACAAGGGATGAA
66 AAAAAACAAGGGATGAA
321218 TTCGGAAGAAAAGGAGGATCCGGACAAAATCGATGAAAGGGAAGAGATCCGAGTGAATGGAAAGG
1 TTCGGAAGAAAAGGAGGATCCGGACAAAATCGATGAAAGGGAAGAGATCCGAGTGAATGGAAAGG
321283 AAAAAACAAGGGATGAA
66 AAAAAACAAGGGATGAA
321300 TTC
1 TTC
321303 AACTTTCAAG
Statistics
Matches: 85, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
82 85 1.00
ACGTcount: A:0.46, C:0.10, G:0.32, T:0.12
Consensus pattern (82 bp):
TTCGGAAGAAAAGGAGGATCCGGACAAAATCGATGAAAGGGAAGAGATCCGAGTGAATGGAAAGG
AAAAAACAAGGGATGAA
Left flanking sequence: Indices 320636 -- 321135
CTTAGCATTCAATGTGTATTCCTGAATAATCTCATTTTTCAATTATTCAACCATTTCATTTTACC
AAGTTCAATGTTAGCCAGATTAGTCAACATTTATATGTTTCGATGCAACAACAAGATGTTATTTG
TAACAAGTAGTTTTGTTGGTTGGTTAATTGGTCACATTTTTTTCATGAAATGGGTTGAATTGGTA
TTAGTCTGGATACAGCAAAATAATTCTATTCGATCGAATAAGTACATTCGATCGAATAAGTACCT
TGTGTCAGAATTGAGAAATTCTATGGCTCGAATCTTTAGTATTCTCTTATTTATTACCTGTGTTT
ACTATTTAGGCAGAATACCGTCACCCATTGTTACTAAAAAATTCAAAGAAACCTCAGAAACGGAA
GAAAGGGGGGAAGGCGAGGAAGAAACAGATGTAGAAATAGAAACAACTTTCGAAACGAAGGGGAC
TAAACAGGAACAAGAGGGATCCACCGAAGAAGATCCTTCTCTTTT
Right flanking sequence: Indices 321303 -- 321802
AACTTTCAAGAGACATTCTATAAAGATAGCCAAGTTTATAAAACTTCTTATATGGATGGGAATAA
AAATCTTCTCTTTTTTCGGAAGAAAAGGAGGATCCAGACAAAATCGATGAAAGGGAAGAGATTTA
AGTGAATGGAAAGGAAAAAAACAAGGGATGAATTCAACTTTCAAGAGACATTCTATAAAGATAGC
CAAGTTTATAAAACTTCTTATATGGATAGGAATAAAAATAAAGAGAATTCGAAGTTCGAAATATT
TAAATTGAAAGAAGATCCATTTTTTTTATGGTTTGAAAAACCTCTTGTGACTCTTCTTTTCGACT
ATAAACGATGGAATCGTGGAGTCCAACTTGGAAGGCCCTGCCGACTCATCGTTTAACCCTGCAAA
TCAAATATGGCAGAAACGCTTAAAGCTCAAGGACAAAGAGTTGATGCAGACTCGATCTGTGTTTA
CGTCACTGTCTTATGAGTTGGCGGCTTTTCCGTTTTTATTATTAG
Found at i:321514 original size:165 final size:164
Alignment explanation
Indices: 321218--321536 Score: 584
Period size: 165 Copynumber: 1.9 Consensus size: 164
321208 AAGGGATGAA
* *
321218 TTCGGAAGAAAAGGAGGATCCGGACAAAATCGATGAAAGGGAAGAGATCCGAGTGAATGGAAAGG
1 TTCGGAAGAAAAGGAGGATCCAGACAAAATCGATGAAAGGGAAGAGATCCAAGTGAATGGAAAGG
321283 AAAAAACAAGGGATGAATTCAACTTTCAAGAGACATTCTATAAAGATAGCCAAGTTTATAAAACT
66 AAAAAACAAGGGATGAATTCAACTTTCAAGAGACATTCTATAAAGATAGCCAAGTTTATAAAACT
*
321348 TCTTATATGGATGGGAATAAAAATCTTCTCTTTT
131 TCTTATATGGATAGGAATAAAAATCTTCTCTTTT
**
321382 TTCGGAAGAAAAGGAGGATCCAGACAAAATCGATGAAAGGGAAGAGATTTAAGTGAATGGAAAGG
1 TTCGGAAGAAAAGGAGGATCCAGACAAAATCGATGAAAGGGAAGAGATCCAAGTGAATGGAAAGG
321447 AAAAAAACAAGGGATGAATTCAACTTTCAAGAGACATTCTATAAAGATAGCCAAGTTTATAAAAC
66 -AAAAAACAAGGGATGAATTCAACTTTCAAGAGACATTCTATAAAGATAGCCAAGTTTATAAAAC
321512 TTCTTATATGGATAGGAATAAAAAT
130 TTCTTATATGGATAGGAATAAAAAT
321537 AAAGAGAATT
Statistics
Matches: 149, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
164 61 0.41
165 88 0.59
ACGTcount: A:0.44, C:0.11, G:0.22, T:0.23
Consensus pattern (164 bp):
TTCGGAAGAAAAGGAGGATCCAGACAAAATCGATGAAAGGGAAGAGATCCAAGTGAATGGAAAGG
AAAAAACAAGGGATGAATTCAACTTTCAAGAGACATTCTATAAAGATAGCCAAGTTTATAAAACT
TCTTATATGGATAGGAATAAAAATCTTCTCTTTT
Left flanking sequence: Indices 320718 -- 321217
GATTAGTCAACATTTATATGTTTCGATGCAACAACAAGATGTTATTTGTAACAAGTAGTTTTGTT
GGTTGGTTAATTGGTCACATTTTTTTCATGAAATGGGTTGAATTGGTATTAGTCTGGATACAGCA
AAATAATTCTATTCGATCGAATAAGTACATTCGATCGAATAAGTACCTTGTGTCAGAATTGAGAA
ATTCTATGGCTCGAATCTTTAGTATTCTCTTATTTATTACCTGTGTTTACTATTTAGGCAGAATA
CCGTCACCCATTGTTACTAAAAAATTCAAAGAAACCTCAGAAACGGAAGAAAGGGGGGAAGGCGA
GGAAGAAACAGATGTAGAAATAGAAACAACTTTCGAAACGAAGGGGACTAAACAGGAACAAGAGG
GATCCACCGAAGAAGATCCTTCTCTTTTTTCGGAAGAAAAGGAGGATCCGGACAAAATCGATGAA
AGGGAAGAGATCCGAGTGAATGGAAAGGAAAAAACAAGGGATGAA
Right flanking sequence: Indices 321537 -- 322036
AAAGAGAATTCGAAGTTCGAAATATTTAAATTGAAAGAAGATCCATTTTTTTTATGGTTTGAAAA
ACCTCTTGTGACTCTTCTTTTCGACTATAAACGATGGAATCGTGGAGTCCAACTTGGAAGGCCCT
GCCGACTCATCGTTTAACCCTGCAAATCAAATATGGCAGAAACGCTTAAAGCTCAAGGACAAAGA
GTTGATGCAGACTCGATCTGTGTTTACGTCACTGTCTTATGAGTTGGCGGCTTTTCCGTTTTTAT
TATTAGGTGTTCATTCGCTGGGCCAGCAGTGGTCCCAGGGTTGTTTGTGGTACCCACGAGTTTGA
TATCCACTGGAAAAAAATAAGAAATTGTTCACTGGTATCGATCTCGATTGGTTCGAAAAAAGAAT
CGGACCAACTCTTCCATCAGTGGATGAGATGGGTATCCCTCCAATTACTGGTCGTCTAGGTTGTA
GTGTTGAGGGAGGGGGAAAAGACGGATATTTGCCATAGGTAACTA
Found at i:333609 original size:20 final size:20
Alignment explanation
Indices: 333584--333624 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
333574 ACCCTGCTTG
333584 TAGAGCTATCAAGTTTTCCT
1 TAGAGCTATCAAGTTTTCCT
333604 TAGAGCTATCAAGTTTTCCT
1 TAGAGCTATCAAGTTTTCCT
333624 T
1 T
333625 CCTTTATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.24, C:0.20, G:0.15, T:0.41
Consensus pattern (20 bp):
TAGAGCTATCAAGTTTTCCT
Left flanking sequence: Indices 333084 -- 333583
TTGTGTGCCACTAATGGTAGTGGTCTTAAGCATCTTTAGCTTCTTATCTCCTTTTTTTTACTCCC
ATTGATTATTCTGTAATTTCCCGAAGAAGGACTAGCTTCTCATCTTGTGCATAGAGTCAAGCATC
TCTAAATTTTGTCATCAAGTCATTTAGAGCCTTAGCTGTTGGGGGAGAGAGAACTCGTCTTGTCA
GGGTCAGGACTGAGGGCACACCTTTCAGACTGGTAGCTATCAGAAGAAGTTCTTTGTAAAAGCTC
ACATCCTCCATTGCTAGCCCTTGGGCAAAGATCTGATAGAGCAAGTGGTAGGAGATCCACTCATG
CTCGTCGGTCAGATAGATGAGAATAGGACTGGTAAAGAACTCCTTGGCTCCTAGTCTATTCCATT
AGAGCTACCTATGTATTGAAAGACAATGTACTTTCCATACTCTCCCTTGGAAGGACAGACAGCAT
TCGTATCCGAGGTAAAGGATCCGATCCCGTAGTTTACCCTGCTTG
Right flanking sequence: Indices 333625 -- 334124
CCTTTATTTTGAGTTGCTAGTAGGAAGCTAGGCTATGGAAATTCGATTGTGAGGTGGGCAAGGTT
TAGAATCTCTTAGGACAGTTTCTAATAGATTTGATTGTAGCTACTCCTCTTTACGTTGGGAGTAG
GGATGCGGTTGGTTCGTGAAACATTAAAAAATCCATGTTTGTGGAACGGAATACTTTGCTTCAAA
GACCATTATGACTTCATCCAAACCTATGTTTTTAGGGCTTTGAAGAAGATTCATCATTCGAAGAG
CTTTTCGCTTGTTTTGGATATAGACCAACTAAGGAGAATTTCTATCTTTCAGATAAGAGAGCTTT
ACCAGTCTTGTCTTTGCTTAATCCCTTTCCACCTTGGAAGAAGACCCTTACAACCGTACTCCGGC
TATTCCGTATTCAAAGTCAGTCCCTCTCTCCGTCCAGCACGTCGCCCGTAACTTGATTCCGAAAT
CCGTAAGCATTCCATGAAAAATAGCATACCCTACTTAGAGATTGG
Found at i:355102 original size:89 final size:89
Alignment explanation
Indices: 354951--355133 Score: 357
Period size: 89 Copynumber: 2.1 Consensus size: 89
354941 TTGGGTTAAT
354951 TGAATCAAGAGTAACACTTGAAATTGAATCAGGAATCCTATTCTAAAATTTCACTTATAAAAGCA
1 TGAATCAAGAGTAACACTTGAAATTGAATCAGGAATCCTATTCTAAAATTTCACTTATAAAAGCA
355016 GCCGTACGAGACCACCTGCAAAAA
66 GCCGTACGAGACCACCTGCAAAAA
355040 TGAATCAAGAGTAACACTTGAAATTGAATCAGGAATCCTATTCTAAAATTTCACTTATAAAAGCA
1 TGAATCAAGAGTAACACTTGAAATTGAATCAGGAATCCTATTCTAAAATTTCACTTATAAAAGCA
355105 GCCGTACGAGACCACCTGCAAAAA
66 GCCGTACGAGACCACCTGCAAAAA
*
355129 AGAAT
1 TGAAT
355134 AGAAGTTAGA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
89 93 1.00
ACGTcount: A:0.42, C:0.20, G:0.15, T:0.23
Consensus pattern (89 bp):
TGAATCAAGAGTAACACTTGAAATTGAATCAGGAATCCTATTCTAAAATTTCACTTATAAAAGCA
GCCGTACGAGACCACCTGCAAAAA
Left flanking sequence: Indices 354451 -- 354950
GCTGAAATGAACACCAAGCCAAGGGTTGGTTTAAGCGGATGACCCCAGGCTCTCTTCGGAATGGA
TGGTGGTTCACTGTCTTGACTCGAGTTATTATCTAAGAGTCAGATCGCTTCTTAGCCAACCGAGT
GAATGAGAAAGAATGGAATTTCTAGCTATGATTCAAAAGAAAAAGAATCAAAGGTTACGCTCCTC
GAAGCAGGTGATTTTTCTATCTGCTACCTAGATATTCAAACAACAACCCTTTCCTCGGCCGTGGT
GAAGAAGGATTGAGAAGGCCATGTGTTAAGCATAGTGACACCGATCCGCTTTGAGGAGGGAGATT
TTGATTGCTGCTAGCCGGAAGGAAGGTGGATTGACTTCGAAGCTTTAGGAATTTTTTATCCTCGA
TGGAATGACATGGAAGTGAAAGCCTTTATAGAGGAAGGTTTAAAACCTTACTAAAAAGATAGAAG
AGTGATGTCAAAGACGAAGAAAAAAAGTTCCTGCTTTGGGTTAAT
Right flanking sequence: Indices 355134 -- 355633
AGAAGTTAGATCATATATCATATCTCCGAATCGAAAAAAGTCTGTTTGAAGGACCCATGGGGCGG
TAACTATAAGGGAGGAGTTTAAACCCGGCATTCTCCGACATTGATTCCTAACGACGATAGCTCTA
CTTTTAGTAAAAAAAAAAACGAAACATTTCTCCCCGATTCGTGTCCTATCACTAGTGCTTACTCT
CGATCCAAGAATACGACAAACCTGGTTAGTTTATGATAAAAAAGTAAAAAAGACCAATAAAATAG
CCTTTCATTTCATTTACGTTAGTGTCTTCTGGATTCTTCCCTTTTTTAGCCACTAATAAGGAAGG
AATGCAGTCTCGCGGAAAGTCTTCCACCGAAGTTCGACGACCTACCGGTTACCAAGCCACACCTT
GATAAAATAAAGAGTGTTTTATATTTTTTTTTTCCTTTCTTTTTCAGTTGAAACACAGTACGATC
TTTTCAACGGGCTGGGCATCGGCTCAGAGCGCGATATCCCTACTG
Found at i:357195 original size:16 final size:16
Alignment explanation
Indices: 357174--357205 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
357164 CCAATCCCCT
357174 CACGTCAACACAGGAG
1 CACGTCAACACAGGAG
357190 CACGTCAACACAGGAG
1 CACGTCAACACAGGAG
357206 TTGAGGGTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.38, C:0.31, G:0.25, T:0.06
Consensus pattern (16 bp):
CACGTCAACACAGGAG
Left flanking sequence: Indices 356674 -- 357173
TTCCCGTAAGTGAGAGCACTGCCCGAACTCCATTCTAGAGGGCCACCTGCGCTACCAATCCATCT
AAATAAGGTCTTCTCCCGTCTTCTTCCCTCTTCCTACGGTCTTGACCTGCAAAGTTACTTCCGAA
AGCTCCCAATAGGCCAAGTAGCCGCAATTAAACTAATAGAGTAAGTAGGAAGGAGCTCTAGATGG
GATTCACACGCAGCTTTTTATTCACTATTTACCCTACGCGCCTGCCCTTCGGGGACCTGGCATGA
ATCTCCGACCGTAGCGTAGCCTTCGCTGCCCTTTTATCTTATCCGATGATGTTTAGCAATCGAAA
GGACAGGTCAAACGAACTGATTCGTATCCTAGTCTCCGATCGATTTCGTACCGTCACTGTAGAGG
GAATTATCTCTTTCCGCTGCTAACTGCAAAGACACTCGAGGGAGTAGGACTGACCACCTCACCTT
TTGGGAAAAGTTGGTAATCCGCCCTCTATGATTCCCCAATCCCCT
Right flanking sequence: Indices 357206 -- 357705
TTGAGGGTACACCCATGCATATGTGTAGCTTTTGGCTCCGGTTCCATACTGTCTAATCTCCTAGG
TCTTTCAGCTGAAGTCCGAAGAATCGATGGTCCCGCCAATTACTTCTGGAGCCCCTTTGTTCGTA
TCACTCATCGGCCTCGCTTAGGTTCCTCTCGATTATCCCCGGATTGGAGGATCACCTTTGACCTG
CCCGACATGCTGTTGACTTGGAGATGAATTCTCCGGCCGTACCTTCTGCGGTCCTTACGCTTGGG
CGGTCATGTTGGGACCAAAGAAAAGTAGAAGCCTCAACCGTGTCGAAGGCATTATAACTAAAGTA
CGCGACCTCAAAAATCAACATCTACATCCCGTCGCTACCCTTTCAGCCCTTTCAATGTTCATCTT
ACCGCGTGAGGGTGATCAGCGTTCTCGTTCACGAAGGCAACCGAGTTGCTCATGGGAAGGAGCAT
GTGAGGGAGAAGGACCATTATTCGTCTCTTCGAACGGAGCCCAGG
Found at i:409325 original size:39 final size:33
Alignment explanation
Indices: 409237--409335 Score: 198
Period size: 33 Copynumber: 3.0 Consensus size: 33
409227 GGATTTGGAG
409237 CCTGCGGTAGCGCTCCTTCTCCTTGAGAGGGCA
1 CCTGCGGTAGCGCTCCTTCTCCTTGAGAGGGCA
409270 CCTGCGGTAGCGCTCCTTCTCCTTGAGAGGGCA
1 CCTGCGGTAGCGCTCCTTCTCCTTGAGAGGGCA
409303 CCTGCGGTAGCGCTCCTTCTCCTTGAGAGGGCA
1 CCTGCGGTAGCGCTCCTTCTCCTTGAGAGGGCA
409336 AAGGTAGGGA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 66 1.00
ACGTcount: A:0.12, C:0.33, G:0.30, T:0.24
Consensus pattern (33 bp):
CCTGCGGTAGCGCTCCTTCTCCTTGAGAGGGCA
Left flanking sequence: Indices 408737 -- 409236
GAATTAGATCTTGGAAATGATCTACCCAAATAGATGCTCATCATAAGCTTTTTTTTTTACTCCTC
TTCCTATTGATCAGAAGCATCCAGCAGCGCCACGACAAAAGAGTTAAGGTACTATGAAAAGCTGC
TCTTGGGGAATGCAGACAGACTCACTTTTTTCTGGCAAATAGGCTTTCATGAGCGTCATAAGGAG
ATTTGGATCCTCCCTCAGATCATCCGCGCATTCACGGAGAGTATCTACATTTGTCTCCGGGGAGA
GCTCCAGGTCGGTTTCCATTATAAAGTGGGCGGTCCTCGAGTTAAGTTCCCTCTGTTCGGGAAAC
AGAGTGGACAGCGGACCGACCCCTCTCTCAGATTCTTTCCGAAGTTTTTCTTTTATAAAATCATG
AATCTCCCTTCGGAGTGCCGCAACCTCCTCTTGGTTGGGAGCGGGGTGGGCAACTTCAGCCGGTG
CTGGCGCCTGCCGCAGGGCCTCTTGAGAGGGCAGTGGATTTGGAG
Right flanking sequence: Indices 409336 -- 409835
AAGGTAGGGAATCGGGCGCCTGCGGCAGCGCCTCTTGCCCAGCGTTCAAAAACGGGGCAAGAGCT
TCAAATAATTCAACAAACATAGGGTGACTTTTTTCTATCGAATCGAATGAGCACTGTGAACTATC
TGCTTCAAAAAGATAGTTGGTTGAATGAGACTGGAAACCTTCTTTCTTCGATCGGAATACAAATA
AGATGAAAAAGGCCATCATTGGGGCAAAGGATAAACCTCTCCTGACCGAGAAAAACAAGTTCCAG
AGGCATCTTCCATTCATCTCGATTTGGGTTTTTCCGCACCATATTTGGATCTGCCTCTTCTTCGA
TCCGGAATTCCCAGCAAATCCTTGACTCCTCGAATACAATGGGATTTCACACCTGGCAAATCTTT
CACTCTACCTCCTCTTATTAAGACCATAGAATGTTCCTGCAAATTATGACCTTCGCCCGGAATGT
AAGCAAATATATCATGTCGATTGCTCAATCGTACTTTGGCTATCT
Found at i:426708 original size:48 final size:48
Alignment explanation
Indices: 426637--426728 Score: 184
Period size: 48 Copynumber: 1.9 Consensus size: 48
426627 GTGGGCTGGA
426637 AGCGTCCACATGAGTTTCTTGTTCCAGAGCCTTGCTGGAAGGGTCCCT
1 AGCGTCCACATGAGTTTCTTGTTCCAGAGCCTTGCTGGAAGGGTCCCT
426685 AGCGTCCACATGAGTTTCTTGTTCCAGAGCCTTGCTGGAAGGGT
1 AGCGTCCACATGAGTTTCTTGTTCCAGAGCCTTGCTGGAAGGGT
426729 GGACCTCGGA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.17, C:0.25, G:0.28, T:0.29
Consensus pattern (48 bp):
AGCGTCCACATGAGTTTCTTGTTCCAGAGCCTTGCTGGAAGGGTCCCT
Left flanking sequence: Indices 426137 -- 426636
GCTTGACAAGATCTCCTTCTTTAATAGCGGTATCACTACCAAAGACAACAATCCCCACATTCTCA
TTCTCAAGATTTAAGGCTATTCCTTTCACACCGCTGGCAAATTCAACCATTTCACCAGCTTGAAT
CTCCTTCAATCCATAAACACGTGCAATCCCATCTCCAACTGAGATCACTCGACCGATCTCATCCA
CTTGAAAATTCGTGTAAAAGTTGGTAATTCGACTTTCTAATAGAGTCGTTAGTTCCGCAGCTCTT
GGAGAGAATTCCATGATTCAATTCAAGATCGAGTGTTTGGAGAATGTCGCTGACTACGTTTCCAA
ATTTTATCAAAAGGTGGAACTCCGCCCTTTTTAGTAACAAAATAAAGCAGAAGTAGGACCAAACT
GAGCTGAGAGTTAGCAGCATAAACAAAGATGGATTTATGAATGAGAAATACAAGTCTCCTATCTT
CATAGGAAAAAATGGGATGATTTCAAATTGTTCAAGTGGGCTGGA
Right flanking sequence: Indices 426729 -- 427228
GGACCTCGGAACCCCCTGGCTGGGTAATCTTCCCCACAGGGTGGATAACCCCACGTTTTGGCCCC
ACCTCAATAGAATAGAAAACTTTCTGTTCTTGATACCACTCCATGGTTTTCCATAGCATTTTGAT
ATTAGTATACCAAGTAAAAAAAAAAAAGAGTGTATTCAGGACAATATTGACTAGAAAGACCGTCC
AAATTTTTCTATAAAAATAAGAAGAGTTAAGGTTTTTGATTTAATCCAAAATTCGTTGGATTCCC
CTTTCAGGCATAAATCACTTTGCCACGGTTCTATGTAAACCCCCCCTTCACCCCCACTCCCTAAA
GTAAGGGCTCTTTGGGGTCTCATTTTCTTTCTATCTGACAGGACAAACAAATAGGAAGGGATGGT
TCTTTCATTTCATTATAGAAATCGAATCTAGAAAGAGAACTTTTGTTGATTGTTGACCAACGGAA
AGCATGGGAGAAAGATGCATAAAGAAATAAGTGCAGCTGCAGGCA
Found at i:445439 original size:12 final size:12
Alignment explanation
Indices: 445422--445446 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
445412 CACCTAGATA
445422 TCTAGATATCTT
1 TCTAGATATCTT
445434 TCTAGATATCTT
1 TCTAGATATCTT
445446 T
1 T
445447 TGCTTAGATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.16, G:0.08, T:0.52
Consensus pattern (12 bp):
TCTAGATATCTT
Left flanking sequence: Indices 444922 -- 445421
CGTAGGCCCTCTAATTGACTTTGCCTTTTCTTGAGTTAGTTTCCCCGCTCACCCTAAGGAATTCT
CTTTCTTTCTTTTTTTGGGAAGACCTAGACATCTTTCCCCGACCTTTGCTGTGATTGAACTGCTA
TCCGACTGGGCGGATTGGTAGCATTAAAACTCTTTAAAGTAAGAACTCACCCTTAACTTAACTTA
AGCTAAGCCGCACCCCCGAAACTAAGGAATAAGACTTCTACCCTTTAGGTAATCGTATCATCCTT
CCAAGCCCCTAAGCAAGGAATTTCTTTTTTCCGGGCTTTAGAACTACAGAAATATGTTGTGTACT
TTCTATACACCTAGATATCTAGATATCTTTTGCTTAGATAAGTACAAAAGCAAGATATCTTAGTA
TATAAGGAGAAGACCGACCTTAGCCTATTGAGGTCAGATCTCAGCCGAACGCATTTTTCCGAGCT
TTAGAACTACAGAAATATGTTGTGTACTTTCTATACACCTAGATA
Right flanking sequence: Indices 445447 -- 445946
TGCTTAGATAAGTACAAAAGCAAGATATCTTAGTATATAAGGAGAAGACCGACCTTAGCCTATTG
AGGTCAGATCTCAGCCGAACGAACTTGCCCACCTCAAACTTGCCTGCCCCACCTCCCGAAGGGAA
CTCAAACTTAAACAAAGGGGAAGGAAGATGGACTCTCCCACGAGATGGAACTAAGATATGCTCGT
AAGCGTACGATTAAGAGATAGGCTGGCTATTGAACTTGTTAATATATCCTGCTGTTAGCTCAAAG
GTTCTGACGGCGGAGAGCTAGAGAGTATACCTGGACGGTAAGAACTAGAGTAGATCCCTACAACA
TGAAGCCTTTTCTTTCCGAGGAAAATGGACAGCAAAGCACAGGGCTCAGCACTCAAACTGTATAG
GTTTCCGCATTTTGAGGGACAACTACAACTACGGCTTATCCATAAGCAAAGCAAGGGCCAGGAGA
TTGATAGTTGAACCTGGCCGAAGTCAGTGTTGTGTTCAACTCCGC
Found at i:477713 original size:101 final size:101
Alignment explanation
Indices: 477589--477791 Score: 397
Period size: 101 Copynumber: 2.0 Consensus size: 101
477579 ATTATCCCTA
477589 AAACCAATGCGAGTTTTTCTATTTTGACTTACTCCCCCACCGTAATCGAATGAGAATGGATAAGA
1 AAACCAATGCGAGTTTTTCTATTTTGACTTACTCCCCCACCGTAATCGAATGAGAATGGATAAGA
477654 GGCTCGTGGGATTGACGTGAGGGGGTAGGGATGGCT
66 GGCTCGTGGGATTGACGTGAGGGGGTAGGGATGGCT
*
477690 AAACCAATGCGAGTTTTTCTATTTTGACTTACTCCCCCGCCGTAATCGAATGAGAATGGATAAGA
1 AAACCAATGCGAGTTTTTCTATTTTGACTTACTCCCCCACCGTAATCGAATGAGAATGGATAAGA
477755 GGCTCGTGGGATTGACGTGAGGGGGTAGGGATGGCT
66 GGCTCGTGGGATTGACGTGAGGGGGTAGGGATGGCT
477791 A
1 A
477792 TATTTCTGGG
Statistics
Matches: 101, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
101 101 1.00
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.27
Consensus pattern (101 bp):
AAACCAATGCGAGTTTTTCTATTTTGACTTACTCCCCCACCGTAATCGAATGAGAATGGATAAGA
GGCTCGTGGGATTGACGTGAGGGGGTAGGGATGGCT
Left flanking sequence: Indices 477089 -- 477588
ATGGAAAAGAGATGTAACTCCAGTTCCTTCGGAAATGGTAAGATCTTTGGCGCAAGAAGAAGGGG
TTGACCCGTATCATCGTGACTTGGTTCTGATTTCTCTATTTTTTTAAGAATACCGCTTTTCCTAC
CCGTATCGAATAGAACATGCTGAGCCAAATCTTCTTCATGTAAAACCTGCTTGATTTAGATCGGG
AAAATCGTACGGTTTTATGAAACCGTGTGCTATGGCTCGAATCCGTATTCAATCCTATTTCCGAT
AGGAGCAGTTGAGAATTGAATCCAATTTTTTCCATTATTTTCGTATCCGTAATAGTGCGAAACGA
AGGCCCGGCTCCAAGTTGTTCAAGAATAGTGGAATAGTGGCGTTGAGTTTCTCGACCCTTTGTCT
TAGGATTAGTCAGTTCTATTTCTTGATGGGAGCAGGGAAGGGATATAACTCAGCGGTAGAGTGTC
ACCTTGACGTGGTGGAAGTCATCAGTTCGAGCCTGATTATCCCTA
Right flanking sequence: Indices 477792 -- 478291
TATTTCTGGGAGCGAACTCCAGGCGAATATGAAGCGCATGGATACAGGTTATGCCTTGGAATGAA
AGACAATTCCGAATCAGCTTTGTCTACGAACAAGGAAGCTATAAGTAATGCAACTATGAATCTCA
TGGAGAGTTCGATCCTGGCTCAGGATGAACGCTGGCGGCATGCTTAACACATGCAAGTCGGACGG
GAAGTGGTGTTTCCAGTGGCGGACGGGTGAGTAACGCGTAAGAACCTGCCCTTGGGAGGGGAACA
ACAGCTGGAAACGGCTGCTAATACCCCGTAGGCTGAGGAGCAAAAGGAGGAATCCGCCCGAGGAG
GGGCTCGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTACCAAGGCGATGATCAGTAGCTGGT
CCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGCAGTG
GGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCG
Done.