Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_040010
Parameters: 2 7 7 80 10 50 500
Length:  478813

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18497--18531
18
1.9
18
88
0
52
42
22
20
14
1.88
19532--19578
15
3.1
15
78
3
58
72
0
10
17
1.12
19538--19585
15
3.2
14
80
11
51
70
2
10
16
1.24
79579--79628
25
2.0
25
100
0
100
36
32
16
16
1.90
81295--81328
17
2.1
17
88
5
52
76
0
17
5
0.98
81465--81490
9
2.9
9
100
0
52
42
0
57
0
0.98
103069--103126
30
1.9
31
82
10
75
3
46
8
41
1.51
145834--146106
111
2.4
113
89
4
401
36
17
24
20
1.94
146537--146740
102
2.0
102
99
0
399
24
25
11
38
1.89
147708--147780
30
2.4
32
75
13
82
46
5
16
31
1.70
148640--148785
72
2.0
73
82
4
179
36
17
17
29
1.92
151042--151081
21
2.0
21
90
5
64
20
2
27
50
1.61
178826--178891
21
3.2
21
82
2
80
12
22
7
57
1.60
188574--188617
21
2.0
21
82
13
52
31
29
6
31
1.84
238144--238177
15
2.2
16
89
5
52
8
32
14
44
1.76
246094--246131
19
2.0
20
89
5
60
7
65
0
26
1.19
255718--255763
22
2.1
22
100
0
92
13
36
19
30
1.90
289931--289977
15
3.1
15
78
3
58
17
10
0
72
1.12
304982--305070
42
2.1
42
100
0
178
14
26
25
32
1.95
310189--310309
59
2.1
59
100
0
242
25
22
24
27
2.00
310532--310575
22
2.0
22
95
0
79
25
25
13
36
1.92
313865--314016
74
2.1
74
100
0
304
24
25
21
29
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
319818--319849
16
2.0
16
93
0
55
37
15
9
37
1.80
320858--320893
18
2.0
18
100
0
72
38
16
16
27
1.90
321136--321302
82
2.0
82
100
0
334
45
10
32
11
1.75
321218--321536
165
1.9
164
96
0
584
43
10
22
22
1.84
333584--333624
20
2.0
20
100
0
82
24
19
14
41
1.89
354951--355133
89
2.1
89
98
0
357
42
19
14
23
1.89
357174--357205
16
2.0
16
100
0
64
37
31
25
6
1.81
409237--409335
33
3.0
33
100
0
198
12
33
30
24
1.91
426637--426728
48
1.9
48
100
0
184
17
25
28
29
1.97
445422--445446
12
2.1
12
100
0
50
24
16
8
52
1.70
477589--477791
101
2.0
101
99
0
397
25
17
30
26
1.98

Tables:   1

The End!