Specifications
==============

Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt2/NC_042873.1/NC_042873/Repetitive_sequence/123.misa.ini"

Definement of microsatellites (unit size / minimum number of repeats):
(1/10) (2/6) (3/5) (4/5) (5/5) (6/5) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           178019
Total number of identified SSRs:                 57
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    3


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	44
2	12
3	1

Frequency of identified SSR motifs
----------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	16	total
A	-	-	-	-	-	10	2	2					14
C	-	-	-	-	-	2	3		1				6
G	-	-	-	-	-	2		1					3
T	-	-	-	-	-	14	3	2	1			1	21
AT	-	4	2	2									8
TA	-		1	1	1		1						4
TAC	1												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	16	total
A/T	-	-	-	-	-	24	5	4	1			1	35
C/G	-	-	-	-	-	4	3	1	1				9
AT/AT	-	4	3	3	1		1						12
ACT/AGT	1												1