Specifications
==============

Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt3/NC_058697.1/NC_058697/Repetitive_sequence/123.misa.ini"

Definement of microsatellites (unit size / minimum number of repeats):
(1/10) (2/6) (3/5) (4/5) (5/5) (6/5) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           1002696
Total number of identified SSRs:                 101
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	81
2	16
3	4

Frequency of identified SSR motifs
----------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	16	total
A	-	-	-	-	-	25	6	3	2	1		1	38
C	-	-	-	-	-	1							1
T	-	-	-	-	-	23	11	5	1	2			42
AG	-	1											1
AT	-	9	1										10
CT	-	1											1
TA	-	4											4
ATT	1												1
CTA	1												1
TCT	1												1
TTA	1												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	16	total
A/T	-	-	-	-	-	48	17	8	3	3		1	80
C/G	-	-	-	-	-	1							1
AG/CT	-	2											2
AT/AT	-	13	1										14
AAG/CTT	1												1
AAT/ATT	2												2
ACT/AGT	1												1