Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_058697
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 1002696
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Found at i:19914 original size:24 final size:24
Alignment explanation
Indices: 19882--19931 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
19872 CCGAATGAAG
*
19882 AAACTAGCAAACAAACAAAAAAGC
1 AAACAAGCAAACAAACAAAAAAGC
* *
19906 AAACAAGCAAACAAAGAAACAAGC
1 AAACAAGCAAACAAACAAAAAAGC
19930 AA
1 AA
19932 CGACGCATAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.68, C:0.20, G:0.10, T:0.02
Consensus pattern (24 bp):
AAACAAGCAAACAAACAAAAAAGC
Left flanking sequence: Indices 19382 -- 19881
ACGCTATCTATTTAGTAGATCGAATGCTCTTGCTTTTAGTTGATGGATTGTTAGTTTAGGATTTC
TATGCTTTTGCAAGCACTAGAAAACACCAACCTTCAAAGTTTAGTGAATAAATAATGTGGGATCC
TTGTGCTCTTCAGGTGGGTATTTTTCACCAATAAATGTATGAACGTAGGGAGATTGCTTTTTGTG
TTTTGACCACAGTACTAAGGTAGTCGCAGGGGAGCGAGTGGAATGCATGAGCAAAAAAGCAGATT
GAATAGGTGTCGTGTTAAGCTTATAACTTTTGCAGAATTGACTGCTTTGACTGTATTTTCATGGC
TCGCTCCTCTCCTTTCAGTCGAGTGGCTTTTCGCTCATCTCATTTGTCAATGCATATTTTCGTAA
GATAATGTTTTGTTGTCTTTACGATATCATTTCTGGTTCGAGATGGCACCCAGTAGAGCACTACA
GTAGCGCCTCGAGGGGTCGTAGCGGCCGGTCACTGCCGAATGAAG
Right flanking sequence: Indices 19932 -- 20431
CGACGCATACTAATTATGGCCTCTCGCTTTTTGGGCTCGCTTTTCGAGTGAACTTACATTCGGAA
CATTAACTGATTGTTCTACTTGAGCTCAAGTTCAACGCCGCCTAGCTTAACTAACGTATTTACTG
TGTTCTTGCTTACCCTTCGGCTTCATACATAGGTGAACCTCTCCTTAACACTCAACGTTGCCTTG
GAAGGCTTTGCCACTGCCTTGCCCCGCAGGAAAGGGACTCGTTGGATTTGTTTTTTCCGTACAGA
AATCCTGAACCTCTTGCTTGCCAACGCTTGTAAATGAAAGACAATAGGCGCAAATGGATCTTCTC
CAATGAGTGTAATGAACCGATTGCTTTGCTTTTCACTTTGGAAATTCTGTATGCAGTTCAGCCCG
GGACACTAATCTAGATATATGCGCAGACACTGGTGAGTAGAAAAGCTATGTATGTTAAGAAGTCT
ATATATTTTCATGCGAGCAGAGCTGAAAGAGTATTGACCTACGCC
Found at i:19928 original size:16 final size:16
Alignment explanation
Indices: 19887--19931 Score: 65
Period size: 16 Copynumber: 2.8 Consensus size: 16
19877 TGAAGAAACT
*
19887 AGCAAACAAACAAAAA
1 AGCAAACAAGCAAAAA
19903 AGCAAACAAGCAAACAA
1 AGCAAACAAGCAAA-AA
19920 AG-AAACAAGCAA
1 AGCAAACAAGCAA
19932 CGACGCATAC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
16 23 0.85
17 4 0.15
ACGTcount: A:0.69, C:0.20, G:0.11, T:0.00
Consensus pattern (16 bp):
AGCAAACAAGCAAAAA
Left flanking sequence: Indices 19387 -- 19886
ATCTATTTAGTAGATCGAATGCTCTTGCTTTTAGTTGATGGATTGTTAGTTTAGGATTTCTATGC
TTTTGCAAGCACTAGAAAACACCAACCTTCAAAGTTTAGTGAATAAATAATGTGGGATCCTTGTG
CTCTTCAGGTGGGTATTTTTCACCAATAAATGTATGAACGTAGGGAGATTGCTTTTTGTGTTTTG
ACCACAGTACTAAGGTAGTCGCAGGGGAGCGAGTGGAATGCATGAGCAAAAAAGCAGATTGAATA
GGTGTCGTGTTAAGCTTATAACTTTTGCAGAATTGACTGCTTTGACTGTATTTTCATGGCTCGCT
CCTCTCCTTTCAGTCGAGTGGCTTTTCGCTCATCTCATTTGTCAATGCATATTTTCGTAAGATAA
TGTTTTGTTGTCTTTACGATATCATTTCTGGTTCGAGATGGCACCCAGTAGAGCACTACAGTAGC
GCCTCGAGGGGTCGTAGCGGCCGGTCACTGCCGAATGAAGAAACT
Right flanking sequence: Indices 19932 -- 20431
CGACGCATACTAATTATGGCCTCTCGCTTTTTGGGCTCGCTTTTCGAGTGAACTTACATTCGGAA
CATTAACTGATTGTTCTACTTGAGCTCAAGTTCAACGCCGCCTAGCTTAACTAACGTATTTACTG
TGTTCTTGCTTACCCTTCGGCTTCATACATAGGTGAACCTCTCCTTAACACTCAACGTTGCCTTG
GAAGGCTTTGCCACTGCCTTGCCCCGCAGGAAAGGGACTCGTTGGATTTGTTTTTTCCGTACAGA
AATCCTGAACCTCTTGCTTGCCAACGCTTGTAAATGAAAGACAATAGGCGCAAATGGATCTTCTC
CAATGAGTGTAATGAACCGATTGCTTTGCTTTTCACTTTGGAAATTCTGTATGCAGTTCAGCCCG
GGACACTAATCTAGATATATGCGCAGACACTGGTGAGTAGAAAAGCTATGTATGTTAAGAAGTCT
ATATATTTTCATGCGAGCAGAGCTGAAAGAGTATTGACCTACGCC
Found at i:24481 original size:19 final size:19
Alignment explanation
Indices: 24454--24491 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
24444 TTTCTCCCCC
*
24454 CCTTTTCATGTATTCTAAT
1 CCTTGTCATGTATTCTAAT
24473 CCTTGTCATGTATTCTAAT
1 CCTTGTCATGTATTCTAAT
24492 TGGCAAAAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.21, C:0.21, G:0.08, T:0.50
Consensus pattern (19 bp):
CCTTGTCATGTATTCTAAT
Left flanking sequence: Indices 23954 -- 24453
AATCGAGGAACGAAGGGATAAATAATATCTCCAAGTGAGAAATAATAGAATGTTTATGGCTTTTA
AGGAGTATATGTAGATTTCAGTCTCAGAAGTAATCAACTCAGCATCGGTTTCACTCCAAACTTTT
CTACTACCTAAGTCTGCCCTACTTCCAATAAAGGTAAGAAATACCCTGCCCGTACCCTCGAAGGT
CTAGCCAATAATTAATTAGTAACCATCGCCGTACTCCCGAGAGAAAGAGCAGTTCCCTAAAAGCG
CAGTGTATATGGGTTCAATTTCATCTCATTTCCAATTTCCCTAAGCCCAAGAGCCTGTGTCAATC
AGCGGGGATCTTTACTATAGTATCTATGGGAATGCTTTTCCAGTGTACCCAAATAGTATCGTACC
CTTCATCTTGTCAGAATCCTATACACCAGCCTTCAAGCTCTCAGGAGGAAGCCCGCTAAAAAAAG
GGTCACCTCTTTCCCATCGCCCAACCAAGATAGGCTTTCTCCCCC
Right flanking sequence: Indices 24492 -- 24991
TGGCAAAAGGACGGCTTTCGCCTTGCCTAACCCGAGTCTTCCTATTATTCCCCAGTTTCGTGTTT
TCAATTGGGCAGGAATCAATCCCAAGCCTGTATCATATAGTACTTCCCAGGTTGTGTTAAGCCTA
TCGCAAAAGTTCCTCGGGGTTAAAGCATCATAAAGCCCGAGTAATATCTCCTCGCTATCGTTGTA
AGAAAGATCCACTGTATCTGTGTAGCTCCAATGGATATGAGTCGTAGTTAAGAGTAAGGTTTCGT
ATAGGGAAATAATTCCGTGCGACCCGAGTACCCTGCGAGTGAGATATTCATCAAAGCCGGTATCC
CTTACAATCGGTTAACCTTAGTAAGTTTTCGCATACCCCGTTCCCTAGTAAAGGTTTGAGGCTTT
CATGTCGTAGCTTGAGTATTGGTATAGTAATTAAGCTACGGAATAATAGCTCGTTTAGCCTACCC
CAAGTTCATTAAGGACTCAATCCTTTCTACGTAATTCAAGATAAT
Found at i:25622 original size:20 final size:21
Alignment explanation
Indices: 25576--25615 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
25566 TTAGTAGTCT
* *
25576 AATGTGTTATCTGAGTATTAA
1 AATGTGTAATCTCAGTATTAA
25597 AATGTGTAATCTCAGTATT
1 AATGTGTAATCTCAGTATT
25616 CAATGTGGGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.33, C:0.07, G:0.17, T:0.42
Consensus pattern (21 bp):
AATGTGTAATCTCAGTATTAA
Left flanking sequence: Indices 25076 -- 25575
ATTTTTTGCGAATCCCGCTTGTGTTAAGCATATCGCAGATCGTAACACAATAGTAGTGGCTTCGA
GTATGATCTGCAAGGGGAGTATATTTCCCAACTGATATATTTGACGTCAGAGTGTTTCCACTATT
TGTGTCAAGTTTTCAGTCTACATTGTGCCATGTTCCCTTTGTGTAGTTGTTTACGCTATCACGGC
CGGTACTAGTATGGGTTGTAATGTATTACGGGCCGGTCCAATCAATTAATATTCGCAAGTCTATC
AAGGAGTAGGTAGATCGTTATTTGCATGAGTGTATGGTCAGATAGTACTCCAGTTAGGTTGCCAA
AGGTTTCCTAAGTTGGAAGTTCCTATCAGTGGAAATCCCAGTTTAGGTTTTTCATTTCCTAAGCT
CCTTGTAAGTCCTATTTCAGTCTGCTGTTAAGTAATATAAAGATTCTAAGAAGAATATGAGTTAT
CATGTAAAAATTAGCTAGTATATTTCAGTGTCATCTTAGTAGTCT
Right flanking sequence: Indices 25616 -- 26115
CAATGTGGGATTTAAGCCCAGCCAGAAGATAAGTTATATGGATACTCAGCTGCTTTCACAGCATT
GGCTATATCCTCAACCCGCTCCTCTGCTTAGGAAGGGCTCTATCAACAAAGTGCCTTACTGTGAC
TATGGTTGGACTCAATTTATCTTGGTGAATGCTAACTAACACTATCCTGACTAAATTACCTTCGC
TTCGCCCCTTTCTCTGAATAATCTAATCTGGTGAGATGAGAAAACTTTCCTTGCTTCCAGCACTG
AGGTCAATGATGGCTATTAGGACAAGGCGGCTATGGGGAATTTAGCTTCCTCTCCCTCCATCCAA
CACGGTTTCCTAAGCTTTAAGCAGGACGTGAAGGCTCACGAAAGGAAAAAGTGCTTTCAATAGAA
GCTCAGGAAGTCTTCCTCGCTGCGCGCCTTACCTGCGGGGACAATTCCTTTGTAAAGAGGGGCTT
TCTTTCCTAGGTCTATTCCTTCTCTCCGACTATTCGCTATGTCCG
Found at i:32177 original size:23 final size:23
Alignment explanation
Indices: 32150--32196 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
32140 AAGAAATACC
*
32150 ATAAAAACGAATAGAAAAAGAGA
1 ATAAAAACAAATAGAAAAAGAGA
32173 ATAAAAACAAATAGAAAAAGAGA
1 ATAAAAACAAATAGAAAAAGAGA
32196 A
1 A
32197 GATCACATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.72, C:0.04, G:0.15, T:0.09
Consensus pattern (23 bp):
ATAAAAACAAATAGAAAAAGAGA
Left flanking sequence: Indices 31650 -- 32149
CCCTTAAAGGTTGCCCAAGCTACCCACATTCATCAGCTGCTGACCAAGCAAGTGCTCCTCCTTCA
TAAAGTACCTTTGGAAGAAGAAGACAAGAGGAACATAGGAAACCATAAATAAGCCAAGTTCCCGA
GCCAGGTATACTGGATTATTCTCCAGAACGCAGTACAGAGATTGCTTTGCTAAGGAAGGACTCGA
ATGAGATTTTCTACTAGAAAAGTATAAGGCGCGCAGCGAGTGAGGTGCCTATAGCTTGTTTCCGT
TGTTGAAGAAAGTCTTAATATTAAGTGGAAAAAGGAAATTTATGTTGAGTGAAAGTTGAATTCAA
CTTTGAAAGCTCGGTCTTTGCTCGATATTTATTCATCTTATTCATCAGTAGGCAGCTAGGATTTT
GGTTTGGGTAATGCGCGTTCGTGATGAAAGCGTTGGTTGTTGGGTTCGAATCAGTCTGGTGGGAT
AAAATGTTGACCGAAAGGAGAGAGCAGATCCGAGCAAGAAATACC
Right flanking sequence: Indices 32197 -- 32696
GATCACATAAAATAAGAGACTTATGTAGCTTTCACTAAAGAAACCAAAGCGAGAGCTTTCTGAAA
CTGGTGGAGGTCTGACCCAAGATTTTAGAAATCATATGCTGCTTGCAAAGGCAAACTATACGGAA
GGGGGAAAGATAATACAAAAAGGTTTCTAAGCCACTCCCTCAGTCTTGCTAGGATAAATACTACT
CCTTTTAGTTCAGGCTAAGGGTATCTTTTCTTTCCTTGTCACCTGCCATAACTACCTCCGAGTCC
TACAAATAGGCTATTCTACTTTAGCGGGTTATGTGTAGGCAATTCACCCATATCTTTGCCAACCA
GGAAGGAAGGCAGGCAGAGACTGCACCTTCTAATAAGACTACTGTCGATTTACGATTGAAGGGGC
TCCACCAGGTGTCTTAGGTTGTTATGCCCGGTTGTTTTCTTCCGTAGTTCTTTCTTCTGTAACTA
TGAAGGAGCCGGCTGTTGTTTTCGCCTCTTATTAAAAAAGTACTT
Found at i:60774 original size:22 final size:22
Alignment explanation
Indices: 60713--60762 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
60703 ACAGTTCCAT
* * *
60713 GCGAACTTCCCCGCCATTAGTA
1 GCGAACATCCACGCCATCAGTA
60735 GCGAACATCCACGCCATCAGTA
1 GCGAACATCCACGCCATCAGTA
60757 GCGAAC
1 GCGAAC
60763 GAGCACGCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.28, C:0.36, G:0.20, T:0.16
Consensus pattern (22 bp):
GCGAACATCCACGCCATCAGTA
Left flanking sequence: Indices 60213 -- 60712
CAGTAAGAACAACAGTCATTTTGGCTGAACAAGACATATAAGGCAGCAGTTTAAACAAGATTAAT
TTGAGTATCTCAGTATAGATAAACGATAAAGAGCCTATACCCACAGATTTATCAAATACCCTTTT
AGCTATAACTAAACCTCGATAAGGATGGAACAGATAGAGTTTAACCTGAGGTTGTAGCGGCAAAT
TCTTATTTGAATGAGCGTTGTAATTCATATAAATAGTAGTCAAAAAAAATCGAGTAGTCCCAATA
AGAGACACCCAAGCGAAACGAAGCCTTATGGTGTGACATAAAAAATACACCATCCGACACCGTTG
AATTTCCCCCTCTTCGCCCTGAAATAGTACATTGGAGAGAGAATGTACTAAGAAAAGTCTCCATA
CCTCAAGCTAAATACCAGTTTTCGAGCGCCATACATAATCCCATACACTTTCCGAGCGTACTATC
CCTATACAGTTTCGAGCGTTCTTACCCATACATAAACAGTTCCAT
Right flanking sequence: Indices 60763 -- 61262
GAGCACGCCATCCAAGTCTTCTGAAATTATAGCTTATTACTTATGAAACTACTGACTTTCCATTC
TCTTCCGTACCGCTTATTCATCAACGGCATTATGGCATATTTCTGCTTGCTGTAATAAACTACTA
TCCTATCCCGCTGCGCGCCTTGGTCGAAAGTGAACTGAGCTGCAACCTCCTATAGTAGACCAGGA
ACATGAGCTGCAACCAATAGACCATCTTAACCCATTTCCCACTTGCGAACGAACAGGATACGGAA
CATCTTTCCGACACCCGGAACTAGGAAGATAAGATAATTCACCGACTACTTCGTCTGCCAGGGAA
TAATCAACACCTACTTCCCGCCTGTTTTATTGATTACCTCGTTTGACTGCCTCGTGAGATCGGAT
AATGGAGAAGATGAAGGTGAAGAAGCTTAGCGCCCTTCACCTATCGTGGAACTCTAATTGAAAAC
GATGCCTTTTTGTTGAATGCTCTCACACCGGCCGGCATCACAACA
Found at i:62000 original size:14 final size:14
Alignment explanation
Indices: 61981--62014 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
61971 AGCAACGTCC
61981 AAACAGAGAATAAG
1 AAACAGAGAATAAG
61995 AAACAGAGAATAAG
1 AAACAGAGAATAAG
62009 AAACAG
1 AAACAG
62015 GGAAGCCAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.65, C:0.09, G:0.21, T:0.06
Consensus pattern (14 bp):
AAACAGAGAATAAG
Left flanking sequence: Indices 61481 -- 61980
GCATTTTTTCGGGTCCCCTGAACAGAAATCACACACACAAGCAATCCGTCTAGAAGTTCTTTAGG
AAAGGTGGAAAGCTGGAGTTTAAATAAAAGTTCTGACCGAACCAGATTGAATGAAGCAGGGGATC
ACGCAGGAAGACTAGATTAAGCTGCTAGCAGCGGTTGGATAATGCCAACCAAGGACTTGTAAGAA
AGAAGGCTTTATTTTTGGTAAGCTTGCTATAGTTGCTCTTCTTAAGGAAGGCTGGGGGCGAATGC
AAAATGTTCATCTTCAACTTACCGCCCGCTCATAGGGCTTTCTTTTGGATAGATTTAATCCGGTG
GAAAGCTTGCTTCTTGCTTGATTTCTTAAAACAAAGTGTTAGGAAAAAGGAGAAAAGAAAGATTG
ATTGCCCCACCTACATTTTCATTACATCTTCTTTAGGTCATTTTTGAATGGAAGAATGCCATTAT
ATAGAGGATCCATACAAATAATAGCAAAAGAGAAAAGCAACGTCC
Right flanking sequence: Indices 62015 -- 62514
GGAAGCCAGGCTCCTCGAAGAACGTGGCCCTGGTAAGATATACTTCCTATAAAGAACCTAAACCC
CATCATATATATATATGTCCACACACCTCAAAAAGCTTCTCCTTTGAGGCCGATGCCGAGCCAGC
CAAGAACAGACACGGCTATGTTCACGCAGTTGGAATCCCTGCTGTTGACACACACTATGAAGGCT
TTTCCTAGGATGAGGTGGTATACCATAGGGCACTCTCTTTCATAGGTAATTGATACTTACTAGAA
TACCCGGCTATTGGCTGAACTTCTTCTGAACTTCATCAAGCATATTTTCTTAAACCGCTGCTCGT
CAGGTTGCTTACTAAGAATATTCCCTACTTCATTCCTAGAATGCTCTCATTCTTTAGGAGAAGCT
TATCCTCAAACTAGAGATTGTATATAAATAAATGCCGCCCACCATATTATCTACCAACCTACACC
CCAGGAATGAGGAGAGCTTTGATTGAGAAGGGCAATTGCATCAAA
Found at i:105332 original size:14 final size:14
Alignment explanation
Indices: 105313--105340 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
105303 CATAGAGTCG
105313 GAAAGAGCTACATC
1 GAAAGAGCTACATC
105327 GAAAGAGCTACATC
1 GAAAGAGCTACATC
105341 CTTTCTATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.21, G:0.21, T:0.14
Consensus pattern (14 bp):
GAAAGAGCTACATC
Left flanking sequence: Indices 104813 -- 105312
TGTATATAAGGATTTGTTAAGATCTACATCGTACCCAGTATTCGTAGATGTTGAATCTTAATCCT
CATCTAGAATAACAAGAGAAATCGTCACCAACCAGGTGCTAGGCGATCCAATTAAATGCAAGAGA
AATCTTCACTCACCAATAGGCGATCCAATGCGCAATCCAGGTACGAGTGCTCATGTTTTTTTGTA
TGTAATTCCGGTCGGTGTTTTCTACATATGCTTGCTTACGAGGGAGGGCATTGATTCAAATTAGT
GGGGCATGCTCAAATCAGTATGGTAATTCACACGCTCCACTGGACTCAATATCAATTCAATTCGT
GTTGAATGAAGATGTTCACCGCTCCGCGCCTAGTCATTCTCCGGAGGAGGTGGCACCCCTTTTTT
TCAAGAATAGGGTCACTTACTTCCATTAAGAATTGGGAGGGGCCCCTACTACTTACTTAATAGGC
TATCTCCTTTTTCTTTATGGTGGAAATTTTACTCTCATAGAGTCG
Right flanking sequence: Indices 105341 -- 105840
CTTTCTATAAAATGAAATACACGCCCAAGGAAAAGAACTACCTACACGAATCAAGTAAATCCTAT
TCAATTCAATATATTGCCCCTCTCAAGTACTATACTTTGTTGGGGACGGAGGGAGCGAATCAAGA
CTCGAAAGACTACCCGGAAATCAATCCTCTTATTCAAAGAAAAAGGTAACTCTTTCTTTTCCAGG
AAATGGGGAATCACTCAGTTCGTTCTGTTTTTTTACTCATTTTCAGAAGAGTTAGTGGACCGGAC
TGACTCCATATCTTCGCTTTTCGTCGTAAAATCCTCGAAATTCCACTAGGTGGTCGGTTCTGGGT
CAAAACTAGACTTGCTCAAGACTTCCTTCTCACTAGCTAGCCAGCCCCATGCAAGAAAAAGAAGC
CTAAGGAAAGGAGGCAAACAATATAGTAGCGAAAGGATGGAGGAAAGCAGTAGCGAAAGCAGGTC
TAGCCCTGAAGTGGTGTGGGACAGACTGATTGATGCAAGAGAAGC
Found at i:110621 original size:14 final size:14
Alignment explanation
Indices: 110602--110630 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
110592 TCGTTGAATC
110602 TGATTGGAGTACTT
1 TGATTGGAGTACTT
110616 TGATTGGAGTACTT
1 TGATTGGAGTACTT
110630 T
1 T
110631 TTTCATCGCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.07, G:0.28, T:0.45
Consensus pattern (14 bp):
TGATTGGAGTACTT
Left flanking sequence: Indices 110102 -- 110601
TCCACCCGCAGTGAGTGACTCTTGCTCCTTACTCCGGCCTGTCTCGTTATAGGGCAAAGAAAGGG
TATTCAGGTTTGATGACTGCGCTGATCCATGAGACTCTGGTCGTGTCCCAGACCATTTATATAGT
GATATAGTAAGTGTTCTTCAAAAAGAAAGCTCTTACTATTGCAAAGTCTGTAGGAATAGGATTTT
TGACCTGAGACCGGAAGGGTAGAAAGTAGATTCCGTTTTAAAAGTATGGGAGGGTTAAGTCAACC
TTCGACGCGAGATACGCGTAAAGGAAGGGCGGTGTCAGAGCCAGGTATTTATTAAAGTAATCTAA
CCTAGCAAATAAAACATATATGATGTGGCAGGCACTTTGAATTGTGGTGTGATTAGAAAACAAAA
TTGTGCAGTGAGTCCCCATTTTTGATTGTGCTGGTAGGAGTAGGGGACGGACCATCAGAACCCTG
GCCGACCCAGATTTATCCAAAACCACATGCCATCTTCGTTGAATC
Right flanking sequence: Indices 110631 -- 111130
TTTCATCGCCTAAGTTCATATGCCGAGTTGGACTGCATTTAAGTACTTAAAAAGTTAAGATATAT
TTCTCGTACTTATCTCTTTTCCACGTTGGAAATTAACAATCAAAAAACCATGTCTGTCGCTCATA
TATATCTGTAAGAGAGAGCGATAGAGAAATCGTTCGTGTTCGGTTGTGTCACTAGGTACCTTTGC
AAGATATGTAATGGTTTCTAGTTAGCTTAACCTTAAAATGCTATTCATTTTAATAGAAAACCTTC
CGAATCTGGATTATGTGTCAAACAGTATCACTGAATCGCTCTATGGCATATCATTACATAATGAT
AGGTGAGTAGAACAAGAGCGGGTTTTGGTCCTTGATGGAACTGTGTTTTCCTTCCAACCAAGTTT
TTTTCTTTTTTGGGAAGATTTCGTTTTCTTAATTCTAGGACCAAAGGCCGCTAAGGTTGTTGGAG
TGAATCATTACGGGCAGTCCATTTTGTATGCCTGCGCTTTGCTCT
Found at i:120734 original size:19 final size:19
Alignment explanation
Indices: 120707--120757 Score: 66
Period size: 19 Copynumber: 2.7 Consensus size: 19
120697 TGATTTCCTA
*
120707 ATTCTACATGGAATAGGGT
1 ATTCTACATGGAACAGGGT
* *
120726 ATTCCACATAGAACAGGGT
1 ATTCTACATGGAACAGGGT
*
120745 CTTCTACATGGAA
1 ATTCTACATGGAA
120758 GAGAGTATTG
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (19 bp):
ATTCTACATGGAACAGGGT
Left flanking sequence: Indices 120207 -- 120706
AGAGCTACTATACAACCCCTTATCCCTTTATTACTCTCCTTGGATTTCTGCTGACTTCTTGAATA
GTACTATAGCTCTAGTACTTCAGCTAACTTATACACTTATACAATAGTGTTGGACTTAACACAAA
CACACTTACCTAATTAACACTTGCTTGAGAAAGATTATCTAGGTACTTTTCTATAGGCAGGGACT
CCATGCTTGAACTTAAATAGAAGGATTAGGCTTGAGTTGCTCTCATAAAGGTAGGGCTTGCCTCC
TGGGTCGCAAAGGGTAACAAAGCAGAAAGAGATATTCTTTCTCTTCTAATGCTCGAGAATAGACG
CTTTCCTTTAATTGTTATGATGGGTAAGCTGTGGGAGGTGACTCTCCTATGTTCTGATTAGACGG
GAAAGGCGAACTCAGTTGGTACTATTCCAGATAGAGTTTCACTTGGAAATAGGTCCTACCATGGA
GGATTTCCTCGACAATACCACTACTCTTAGAGACTTGATTTCCTA
Right flanking sequence: Indices 120758 -- 121257
GAGAGTATTGAGCGAAAGACTTCTCAAATACAACAAGGGCTTCTTATTGCTTAGGCTCGGAGGTC
ATTACGAATAGGGGCTCTCTCACAGGCTTGACCTATCATCATTAAGGCTCTTGGTGGAGATAGGC
GGATTAGGACAGCTAACTTGAACCGGTTAGTAATACTAATACATACCACTGAAAACATGCTCCTA
ACCAATTAGGTTTCATAGTAGGGCAAAAGTAATCAAGCCTGGTCGTCTATCTTTGACGCAAATCA
AGTCAACAAAAGTAATCAAGCACATTTTCCTTCAATAAGTGGATCACACCAGTAAGACTTTCACA
CTTGATGGGTTAACATAAACAAAAATAGGCTTAATAACCTCTCTCTTTAGTATTTTTTCAACGTT
CTTCTGTGTTACGCTTGGCAAAGATTCACTAACAACATAGCTTCCCACCTACAAAAAAATAAGAT
AGAAACACTGATACGTTAATACGTTCTTCTTATCTAGAAACAGAG
Found at i:127305 original size:21 final size:21
Alignment explanation
Indices: 127279--127328 Score: 100
Period size: 21 Copynumber: 2.4 Consensus size: 21
127269 TTTTGGTTAG
127279 TTCGGTGCTCGGGTAAGCTTC
1 TTCGGTGCTCGGGTAAGCTTC
127300 TTCGGTGCTCGGGTAAGCTTC
1 TTCGGTGCTCGGGTAAGCTTC
127321 TTCGGTGC
1 TTCGGTGC
127329 CTACTCTCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.08, C:0.24, G:0.34, T:0.34
Consensus pattern (21 bp):
TTCGGTGCTCGGGTAAGCTTC
Left flanking sequence: Indices 126779 -- 127278
TTAGGAACTATAACAACTGGACTTCACTATTGAAGATACTATTCATTCCCAACTTTCACTTCAGT
CTTGAAAAAAGATCTCCACTCCGCGGGGTTGAACTTACTCTAGCAACGGAAACTAACAAAGTAAA
TACCTCGACTGATATGGTTTCTGGATTTCCAACAAAAACTTCAACTTGAACTGAAGCTTCTGCCC
TTTGAATAAGTGTATTCAACTCATTCGACAGAGTGGTCTGATACCGCAACATAACTTCCTAAATG
CCCAACTTCAACTCCACTTTTCTCTAAGCTTCGAACTGACCTAACCGCTTGAAACTAGAGATTTA
AAGGAAAACTTCTCCTTGCTTAGCTTGCCATTAAAGAGTAAGATGCTTATTTAGACTCTTCTTCC
TTTATATACTACTAGTTGCTTATGCTTTCTTTTCTACAGGGGAAAGCTAGTACTTTCAGTCAGTA
GTTTCCGGTGTCAATTCCAAGAGCAAAAGGATAGGTTTTGGTTAG
Right flanking sequence: Indices 127329 -- 127828
CTACTCTCTCTGTCCCCGCCGCTCCTCGCACAAAGCTTCTTTTCCTTCTTGTCAATCAAAGGAAA
GAAACTACTGATAACGTACGTAAACTACTGGATTCGTTTCCTAGCACTACTCAAGGGCTATCCTA
GAAGTACTAAATCTTTCATTGAATATTGAAGGTACAAGCTCAAAGTAATTCTCTACTTACTCTTC
GCTGCCCTCTCGACCGACGGGTGATCCTTCTTAGGACAACTAGCCTAGGCCCATGTCAAATAACT
CTTTCCCAGAGCTTTTTCAGTTCAAGAATTAGTATAAGTAAGATCCCCTTTACTGATGCTTGGTA
ATTGGGAGTTTCAAGGATAGTGATCGGTAACTTGCTACACAATCGCTTCTCCCGTCGCCGCTCTC
ATCGACTTTTATTCCCCTATCTTAATTTAGCCAAAATCACTAACTAATTCAGTTTCAAAAAGGAG
AAATATGCTACTTCCATACATTTTTAAACATATTTATAATCCATT
Found at i:185797 original size:13 final size:13
Alignment explanation
Indices: 185779--185806 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
185769 CATAGAAAGC
185779 ATAATAATATATT
1 ATAATAATATATT
185792 ATAATAATATATT
1 ATAATAATATATT
185805 AT
1 AT
185807 TATATATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
ATAATAATATATT
Left flanking sequence: Indices 185279 -- 185778
TAGAGTTGCGACTTGGGCTCAGAAGTCCATAGCTTGTTCACTTGCTTGTTTACTTGATGCCAATC
AGTTGTGTACTTGCTTGTCCTTACCTTGGTACTGTCCCGTACCAGTGCGGTGACGTATCTGCTTG
GTCTAGCAAGGAAAAGTAGGGCAAATATTCAGTAGGCCACCCACAGCTACAGGAAAAGAAGAAAG
TTAAGCAATGCTTGGCAGAATGCATGTGATGGGGGCCTAACCAACTAATTCTTAGTTTACTAGCT
TGGAAGAAGCACTTTGTATCTTAAACCCAAGTGAATAAGCGGAGCTTTTTATTTCAGTTTTTCCC
TTAGCTCCTTTGCTGCGCGCCTAGCTCCGTCGTAATAGTTCCTGGCTGAGGCAAAGAGGTCGGAT
AATAAAAAGTAGTAGAAAGGTAACAAAAAAAACCACTAAATACTTTGAGAGGTCATACTCTAAAG
TAAGGGCGCAGCTTCCCATTTATACAAAAAAAAGGCATAGAAAGC
Right flanking sequence: Indices 185807 -- 186306
TATATATTTTCTAAACAAGGAAACTAGCGATATGGAAAAAAATGTCGGAGTGGGATTAGACTTTA
TACCAACCATGCGGAAAATCAATCATATATTTACTGCTTTATCTCCTTTCGTAAGAAAGCGCTCT
TAGTTCAGCTCGGTAGAACGTGGGTCTCCAAAACCCGATGTGGTAGGTTCAAATCCTACAGAGCG
TGAAAGCGAATCAGCAGACCCCAAACCCAAATGCAATCAAACCCACCAGTCAGACCGATAAGCCC
CCGGAGTAGTATCAAAAAAATTTTCTCCAAACTAAGCAAACAGAACAAGTAATTCACCCTGATTC
ACAATTTGGATTTGTTAAGCCTAAGCTCCAAGGATAGTTTTATGGATATTGGCTGGTGTGAGCTG
ATGTTAGTGTCTACAGTTACATGACAATAATGAAAAAATCTGGGTCAACGTTAGAAAGTAAGAAC
AAAGAATATAACAAAGTATATAATTAGATGCAACGTGATATGGAA
Found at i:195278 original size:28 final size:28
Alignment explanation
Indices: 195237--195290 Score: 81
Period size: 28 Copynumber: 1.9 Consensus size: 28
195227 ACTATTTGAC
* * *
195237 ATGATATTTTCATGTCACTGTACCGAAA
1 ATGAAATTCTCATGTCACAGTACCGAAA
195265 ATGAAATTCTCATGTCACAGTACCGA
1 ATGAAATTCTCATGTCACAGTACCGA
195291 CATACAATCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.31
Consensus pattern (28 bp):
ATGAAATTCTCATGTCACAGTACCGAAA
Left flanking sequence: Indices 194737 -- 195236
TTGGTGGAGAGAATGTATTCTAAGTCGAGTAATAGTGGGATACTTATAGCAAGAACATTACGAAT
GTATTTGCTTGGTTCTGCCAATGAGACAGGTAAGTCAATCTGTTGATATACCTAACATGTATACC
TCTATTATGTTGATGATAATTTCACCTACGTGAAGAACCACGTGAATGAAGGCCGCAAGGAACCG
GAGTTAATCAAAAGATTAGTGGAGAAAACACCTGTGAAAGCGGCGCCATTCCTAGTTGGATATAT
TTAAACAATACTAAAAGCTTATTATTTACATGTAACATATGCTGTAGGTGTGAGATGATTGTGTA
TCCTGATAGGCCACTTCCATCAAAGGAGGACTCTCTAGTAACATGGTATAGTGAAGATTTGTTTC
TTGCTGGGGCGGGGAGGAGTAGGATTTGTTTTACTCCCTCGACACCATGTCCAAATAACATAACT
CTCGCTCGCCCAAAACTTTCTTCTGGCGAAAAAATACTATTTGAC
Right flanking sequence: Indices 195291 -- 195790
CATACAATCATGAATCTGAAATTGGAATTTTTTAACCGCTGCGCGCCTCCTGGAGGTCGACGTTT
CACCAACTTAGTGCTTATGCAGTCATCTTGCAAACTTGATTGTTTACTAAAAAGGTTAATACAAC
CACAGTATTATCCGGCTGGAATTGGTATTCATTCAATCTGTGGGTTAAACAGTACAGCTTCTACT
TTCATCAGGATGTACCGCAGTACATTGGGATTTCATTCTCTTCGCACTTATTATACTAGCAATAA
TGTAAGTTATAAAAAAGGTTTAATGGAAGTGAAAATAAGTTTCACTGGAAATGATCTACCAGCTG
CTGGAAGTACTAGTACCTTGTTTAGAGAATGCTATAAAGATTTTCTTACTTCTATTTGGCCGTGC
GTTGCTAAGCTTACTATTTCATATGATGTATTAATGCCTAATTCACCTAATATAAGTTTCACTCT
AGGGTCTGCTATTTATGTAAGCGATGAAGATGGATATCTGACTGA
Found at i:199290 original size:19 final size:20
Alignment explanation
Indices: 199266--199303 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
199256 CGCTATAGTC
199266 AAAGAACTATAAGA-ATAAG
1 AAAGAACTATAAGACATAAG
199285 AAAGAACTATAAGACATAA
1 AAAGAACTATAAGACATAA
199304 ATATCTTGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.63, C:0.08, G:0.13, T:0.16
Consensus pattern (20 bp):
AAAGAACTATAAGACATAAG
Left flanking sequence: Indices 198766 -- 199265
CAAATCCACCTATTTATTAGGAATGTTTTGAAAAAGGTTGGTTATATATGAAAACCTCTTTCTTA
TTCAATTATTCAATTAGACATGATATCATTATACTAATATTGAACTGCTCTTTGAACCTTGCAAT
AACTTATAGAACTATGACACTCTAGATATTAAAACCCAGTGAACATACGTAGTTCTACTGAGCAA
TTTACCTCTTTGAGAACAAAAGCTACTACATTATAATGTATTGAGCTATTGGAGTTTGTCTAACC
AAATATCATTAGGACCCACCGATAAAAAACGTAAATAGAGGTGGTGTGGTTATAACAAAAGGATA
TCCCCTCCTAGAAGAGAAGAACTTCCGATCTTATTATCCAGCGCAGAACAGCTCTCTCTAAACCA
CACCCGACCTAGTTGATCGACCCCTCTCGCACCTAAAGTGCTACCCATGAGACTTGTAGAGTGAC
GCTCTCACTTTTTCTTCCTGAGGAGCCTGCCAGCCCGCTATAGTC
Right flanking sequence: Indices 199304 -- 199803
ATATCTTGAACGATGACAGATACTTTATATCATCCAAACAACCCTGCGAACATACGTAGTTCCAC
TTAGCTATTTTTTATCATTATTCCAGAAAATGATCCACTTATTCTCGCTCTCTATAAAAAAAAGC
AACATAAATGTGTCCCCACCATTTAGAAAATAAAGGAGGGGTTTTCTTTTAGGCTCTAACAGCTA
TTTCCCACGCTAAACTTCTTAAGGAGCACTTGTTCCGCTGGGTGCACATCAGCGAACTCTAGAAA
CAAAACAAGACCCAACAGTCAATGGTCAATGAAATTCCAAGAAGCTTGTAAGGAATCCTACCCAT
GAAGATTTTCTTTATAGACAGAAGATAAGTAAGTCATTTCAGCGCTCGCCCTTATCAATCAACAA
ACAAATTATCATCTAAAGAGTAGGAGTAGTGAGCTACCCTTCGTATGTTAACGGGGTGGTATATG
TCTTCGAGTATAGCTGTAAGTTCTTATTAAACCACCAACCCGGGT
Found at i:211058 original size:21 final size:22
Alignment explanation
Indices: 211026--211073 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
211016 TAGCGGTAGC
*
211026 AGTAAGGCTCTACTTCCAAAGG
1 AGTAAGGCTCTACATCCAAAGG
* *
211048 AGTAA-GCTCTACATCCATAGT
1 AGTAAGGCTCTACATCCAAAGG
211069 AGTAA
1 AGTAA
211074 TCTTAGTTCT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 18 0.78
22 5 0.22
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (22 bp):
AGTAAGGCTCTACATCCAAAGG
Left flanking sequence: Indices 210526 -- 211025
GGTCATCCGTAGTTAAATAATACAAGTTCTATACATCCACCGTTGAATACCTACCTATCGAAAAA
ACCCATTAACGGCAGTTTCCCAGCTTACCTTACTACCGGTTCTTTCTTAATCCAATCCTGACCTC
TTTCTTCATTTTGTGCTTATTGCCCATCCCATCCTGCTATGCTAGTCCTTTCAACCGAATGAATC
CTTGGAAGGAGATCGGCCTAAGCTGCTTGGGTGGTTGGATTCACAGTAGGCGAAGGCTACCTAAC
TACAGGACAGACTCGTGACGCTCGTTCGGAACCTGGGTTGGAAACTAATTGATTGGCTGTTTCAG
TTGGATGTAATAAGAAAGGCGCTTGTAAACCGGCAAAAGAGAATGATCTTTGAACTCGTGGACCT
CTACCTGAGCTCGAATCTATTGCTTTCAGGGAAAAGACCCTCAGAACAGTGCTAGCTTGCTGTAT
GATGAATTTAAGAGGGATTTAGATGCTATAGCTCGTAGCGGTAGC
Right flanking sequence: Indices 211074 -- 211573
TCTTAGTTCTTTGTGATCCATACTGCTTTTATTGTTCGGTTTGCTAATCTTCTTTCTTGCTAGAT
CCATCAGCCAAATAAGAGAAAAAAGAATCTAAGGATAAGAATAGAGTGACAAGCATGGTTGAATT
AGTTTCCTTTTAGTGTTCTGCTAGGCTTATACCATGTTAGAATGGCAACCAACTAGAGCTGGATT
TCATTAAGCTCCATCTATTGCAACCTGGATTTCATTCTGTCCAACCTTACCTGCATTTTATTTAA
TACAATCCACGATTCCCGAGTGTTTGACCCTTGAACGATAAATCCCCTTATAAGGAGGTGTAACG
CCTCTTATTTAGCAAGATATGTTAGGATTTCCCCATCATATCATCCAGGATTCGATACAAAGCAT
CGAGTAAGACGAGCCACACATGCAATAGATCAATCTTATGGGTTGGAAAGGAAGATTCACACTAT
AGACGAGAATATGAAAGAAAAGAAGAAAGAAAAAAGTATACATAC
Found at i:215762 original size:13 final size:13
Alignment explanation
Indices: 215744--215771 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
215734 AACGTTCAAC
215744 CATACACTATTGA
1 CATACACTATTGA
215757 CATACACTATTGA
1 CATACACTATTGA
215770 CA
1 CA
215772 GACTTATGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.25, G:0.07, T:0.29
Consensus pattern (13 bp):
CATACACTATTGA
Left flanking sequence: Indices 215244 -- 215743
GTAGTAGTTTCATCTGTTTTAGCAAGAAGAGCTGCAAGCCGTGATGCCATTTCTCTGGTATTAGG
GAGTAGCTTTATGTAAAATAGTAATGTGTAGAAAGAAAAGTCTTATGCATCAGATAGAATAAAAT
AAAGATAGCGGGGGAAGGAAAAAAAAAGAAAAGAATCGACCTAGATAGATAGAATGATGGAAATA
GTATCAGGATAAGTTGCTTATTCTTATTTTCCGGGTCAAGTTACCTTTCGGCAGAGTTGGTCTTC
GATCAGTAAGAAGAGGGCGACCTGGTTGATTTGCTTCAAGCTCCAAGCTCTTTCCAAGCTTCACT
CAGAGTCGTTCCGTTCCTCATCAACCGTTCTTCTCCATCTTCTCTCGTTCCTCAGATATCCCATT
CCAATAGCTTTGAGGTGAAACGGCGCCTTAGGTTCCAGTCTGTATAATCCTAGATAGGTGTCTTC
CCAATCTTCTTCCGATCAATGTAAGTAAGCCACTTAACGTTCAAC
Right flanking sequence: Indices 215772 -- 216271
GACTTATGACATAAACTATTTACTTACGAGACGTCACTTTGACTTGCTTCTACTGTAACGTACTG
GCTTCTTTCTACTTTGACTTGCTTCTATGGTAGGTAACGTACTGGTTGGTAACGAAGGTTTTGAA
CAGCTTTCTTTCTTGCTTTGATGCTTGATACACTAACTGTTCCTATCTGTGCCTATTGAATGATG
TTTTTGCCTCAGGTAGACTATTAAGAATTTGTTTGTTATCGTGCTGAAGATCCTGGGAGGGACTC
AGTCCAGAAACTTAATGTATTGGGTCTCATCAAAGCTATCTTCGCTCACCCCGGTCCTTCCTTCC
TCTTCCCATTCGGTACCTAACTATTTCCTTCCATATTGAATAGCTTTTATCGGCACTTCTTCTTT
TCCTCTGCTTTCTTCTTCCATTCCTTCCTTCCATATCACACGGAAAGCCCTGACTAGACCTATTA
CATGTCTATCTATCTCTGCTGCTATTCCAGGCATATACCCTGACA
Found at i:217968 original size:30 final size:30
Alignment explanation
Indices: 217932--217991 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
217922 AAACAGTGAA
*
217932 CTCTCTCCCCTCTTCTTCCAGCCTTCCTAC
1 CTCTCTCCCCACTTCTTCCAGCCTTCCTAC
*
217962 CTCTCTCCCCACTTCTTCTAGCCTTCCTAC
1 CTCTCTCCCCACTTCTTCCAGCCTTCCTAC
217992 AGATGGGAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.08, C:0.52, G:0.03, T:0.37
Consensus pattern (30 bp):
CTCTCTCCCCACTTCTTCCAGCCTTCCTAC
Left flanking sequence: Indices 217432 -- 217931
TCAACCACTCCCTTGAGATCCTTTCAAAGAATCACTTATCCCATTCCGGCAAATAATTCGATACA
GTTCGTTTATCTATTTGCAAATCTACTTACTAAAAAACAACAGCAGAAAAGGAATTTCTCTTCCT
CTGCGAAGAGCAAAGGGAAACATAAGTCCGAATTTACTTTTTTTTTCTTTTCTCTTTTCATGGTT
TTTACTACCTGCGTAACTTTCTTTTTTATTTCTTTTTTTTTCCCTGCTTCTTTAGAAATCTATAA
AGAGTTGGGCCAAACTTTCATAGCTTGGCTTTGCTGTCTTCTTTCTTCAACAAGGTCACTTTTTA
GTGAATTGCGAGGTCGCCGCTTAGCGCCCTTGGGAATGGACCCATCGGGAGGCTCTTCGGTCGGT
GAATTTGATCCAAACGGTCAGACCGTCGTTCAGATGGACGACGACTTGGGTTGGGATAATTTGGA
TCCGATACTTGAAATCCCTCCAGCGGAAGTCCGGAAAACAGTGAA
Right flanking sequence: Indices 217992 -- 218491
AGATGGGAACAGTAGTCAAATCCCAAAACACAATATAGCGGTAATAGGAGAAGATTATGGAGAAA
AGGCATTGGAACGAATAGATAAAAAATTCCAAGAAATATCCATCCGAAAGGCTCTGCCTGACTAT
ATGGCTCAATTTCATAACGCTTCGGTAGAGACTCTAGAGAGGGAACTGAAGCTCCGAGAAAAGAG
CATATATCAAAAGCATCTGTCTTATTATTGTTTTAAAAAATATGATTACAAAATGCCCATAATAG
ATGATGTACGTGGCCTTTTGAATAGAAAAGAAGAAGAACAAAAAGTACACGTATTGATTTCTCAG
ATTTTACAGTACCAAGGTCGGCAACCTACTCTTTCGGAGATTTGGGTGCTTGAAAAGCAACTTGA
GCACCCTCATTTCCGATATGATTTACTTAAGCACGTTTTCCCTGAATATGTCACGAAATAAAATA
ATATCTTCGCGGGCACAAGGGAGGGGCCGCCCCGGACTAGCTACT
Found at i:222733 original size:15 final size:15
Alignment explanation
Indices: 222713--222759 Score: 94
Period size: 15 Copynumber: 3.1 Consensus size: 15
222703 TATGCACAGA
222713 GTCAACTAATACATT
1 GTCAACTAATACATT
222728 GTCAACTAATACATT
1 GTCAACTAATACATT
222743 GTCAACTAATACATT
1 GTCAACTAATACATT
222758 GT
1 GT
222760 TCATCTTACG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 32 1.00
ACGTcount: A:0.38, C:0.19, G:0.09, T:0.34
Consensus pattern (15 bp):
GTCAACTAATACATT
Left flanking sequence: Indices 222213 -- 222712
TATTCCGAAGAAGTAAGGCATGAATTTCTTATTTTGACCCCCAAGTTCATTCCAGTATTTATACT
TCAAACTCATTGAGTTGATACCTATCTTAGCTAATTCCGCTATTCATCTCCCCACCCTTACCTCG
TGCTATATCGCATTGCAAATCCCGTCCGTCCAGTTTATGAAATAAACTGCCACCCAGTGAGTAAC
TACTAACGTTACGAACAAAAGAAGATAGAAGCTTCTTGATTCTCTAAGTTATAGAATTAGATTAC
ATTATATCTGGAATCTAGCCCAAGGTCTCATCTACTGCATCAATCTCAGTGGTATTCAACCTCGC
TAACCTTATTACAACATGTCCATCTTCAGTATATTTACTAATAAGGTTTCATCCTTATTAGGCTT
CACTTTTTATTTCATTTGTTCTTAGTTGAAGTTTTTTTTTATTTCCTCCCTTCATCTTGTTGTTT
TATTCAAGTGTTTACTCCTTATTGAGACGACTATCTATGCACAGA
Right flanking sequence: Indices 222760 -- 223259
TCATCTTACGAGAATATCTATGTGTAATTCCTTTGTTTCATATTTGTTTCTTCCCCCCCCCCTTT
ATTGCCTATTCCATTACCTCATCTTCTCCGTGTCCCTTAGTTTCTATGCATTGTCTCCAGCATTT
CTAGATATCTTCTAGTTTCTCCGCGTATTTTATTAGTTCCTATTATCATCCGCTTGTTATTGTGT
GTGTGCGTATTCCCGTTCTCATGCCTATTCTATTCATCCGAGCCAAGTTTACTTATGAATTTCCT
ATTATTAATTGAATTCCTTCGTTTCCAATACCTAACTTCTGTTTCTATTAGCAGTTTTCCTTTGT
GTTCATCCATTATAGACCACCGTTCTTTCTCTCAGTCTCTTTTCCTGCAGTTTCATTCATCTATA
AGTTCGATTATCTATCCTAATTATTCTTTAAGGTCAGGACTATCCCTATAGTAAGTAAGCCCCGA
GTATATCTAGAACTTACCAAAGGTACTGTGCACCAAAGGGGATAG
Found at i:223574 original size:35 final size:35
Alignment explanation
Indices: 223514--223583 Score: 106
Period size: 35 Copynumber: 2.0 Consensus size: 35
223504 ATAGAATGAA
*
223514 ACAAGGAATCTGGAAATTCAACGAAACCTCATAAT
1 ACAAGGAATCAGGAAATTCAACGAAACCTCATAAT
*
223549 ACAAGGAATCAGTAAA-TCAACCGAAACCTCATAAT
1 ACAAGGAATCAGGAAATTCAA-CGAAACCTCATAAT
223584 TCTTTATAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
34 4 0.12
35 28 0.88
ACGTcount: A:0.47, C:0.21, G:0.13, T:0.19
Consensus pattern (35 bp):
ACAAGGAATCAGGAAATTCAACGAAACCTCATAAT
Left flanking sequence: Indices 223014 -- 223513
TTTCCTATTATTAATTGAATTCCTTCGTTTCCAATACCTAACTTCTGTTTCTATTAGCAGTTTTC
CTTTGTGTTCATCCATTATAGACCACCGTTCTTTCTCTCAGTCTCTTTTCCTGCAGTTTCATTCA
TCTATAAGTTCGATTATCTATCCTAATTATTCTTTAAGGTCAGGACTATCCCTATAGTAAGTAAG
CCCCGAGTATATCTAGAACTTACCAAAGGTACTGTGCACCAAAGGGGATAGTGAAGTAAAGAGTA
TTCCCTGCCTAAGGTTCTGCTTCTTCAAAGATGAGTAGATATTTCGTGAAATCTCGATATGTTGT
ACTTCGTCCCAGTGTCTTCAGTCTTAATGGTGAGATAGGTATCGCATAAAGTTCCTAGTAATTTC
CAATCGAAGAGATTGCCACCCTGCCTCCTTTATGGTTCGCCCCAATCGTTCCATCGGAAGAGGAG
ATGCCCTCGCCCCTTTTTCAGACTGCCGGCAATAGATAGAATGAA
Right flanking sequence: Indices 223584 -- 224083
TCTTTATAACTAATTCTATATCTAATAAAGATTCTATCTCAAGTTTTGATTCGAGATATAAGAGA
AGTTCGTTTTCAGTGTAATAAGTTTGTTTCAAGTTTCTATGTATTAGGAAAGAGTCATGTTAATC
CTACGCAGCCAAATTGTTTGTTATGTCTATGTGCTATTTGCTATAGGAGATAGTTTCCTAGCCTG
ATAGATTGATAGTGCGAATGATGAGTTACTGTAGGAGAATCGCTCTCGAATAAGTATTAGCTATG
TGTGTATATGTCTGTCTATTCCTGTGTAAATAAAGAGAGGATATGTAAGTCTCGGTATTTTTAAT
AATTGGAGTCATGGCTAAACTGATTAGTGTTTTTCTATTTTCCATCCTGTGATTTTCCTGGGAAT
TTGACAGCTTTTGCAACCCTTGAAATCTTATGGGTAAGTACTGTGTTGATAATATGGATTTACCT
ATTTTGTATCCCGCTACTTTGAGATCGCTAGCATTATCTATCGTT
Found at i:233724 original size:13 final size:12
Alignment explanation
Indices: 233705--233740 Score: 63
Period size: 13 Copynumber: 2.9 Consensus size: 12
233695 AGAGAATAAA
233705 ATTAATTAATTT
1 ATTAATTAATTT
233717 ACTTAATTAATTT
1 A-TTAATTAATTT
233730 ATTAATTAATT
1 ATTAATTAATT
233741 ACTATATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 11 0.48
13 12 0.52
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.56
Consensus pattern (12 bp):
ATTAATTAATTT
Left flanking sequence: Indices 233205 -- 233704
GCAACAAACATATAGCCATTAACCTAAGGTAATATAGAAGGGTCCAATTAGCGGCTTCTTCCCTT
CCCTTGTGATGAAGGAATTATGATGGAAGCCAACGCTACGCGCCTCGACTAATAACCTACTTTGT
TCTAATGCTTCTCTTCTGTTACCAGGATGTTCATCAAAGCTTAACACACCCTTGAATTCTGTCAT
TCATCAATCATTCAATCAATCATTCTGAAATTAAGTTGAAAAGATCGTTTGGTAGTTAATAAGGC
AGGTCACCCTCAAAAGGTAATCGTTAAGAGAGGTAAATAGCGTCTAGTCCAAAGCGCTCGTTTTC
AACGCGGTAACGAGTTCTACAAGAAAAGTAGGGTTGTCGTAAAACAACGAACGCTTTTCCCTTCT
CTTTCGATGCCCTAGCATCTTAAGATTAATAAGTATAAGAAGGATTTGCTGATGTTCAGGTTGTA
TTGCTACTTCATTATTTATTTTGGAGATTTAACATAGAGAATAAA
Right flanking sequence: Indices 233741 -- 234240
ACTATATAAAGTAGAAATACTAAATATAGTGAGCTTACTTAAAGAAAATCTCTATGAAAATCTTA
CTTCCTTAGAAAGCTTTCAAAAGCAAGGAAGTATGTAGGAAAAAGTGCTAGTGTAGTTAGTAAGG
CTACCTTTCTCCGAAGTGGGACCTTTCCCCGCGCACTGGGTGTTTGCTTGTCAACCCGACAAATA
GAGAACTCTGCCTTTCAGAAGGCGGAGCAGAAAAAGGTAGCTCCTTTTCCTGGGTAAAACAAGAG
AAATAGATAGTTGTCCTTGCGAGTTGAGGTGGGATAGTTTGGACGACAGAGTCTATCTATTGGTA
GGCTTCGCTAGCCGAGGGGACTGCTCTCTCCTTTCAAAATGAAACGAACGAGGAGAGCTGCAGTA
GGTATGGGTGCGGTAGTGGTCCCATACCTTTTTAGTTTCGTTCTTCTTTCCATGTGTGAATAATC
GAGCTGTAACTCCTTGGCAACGCATTGACATTACTTTTCTCGATA
Found at i:254699 original size:24 final size:25
Alignment explanation
Indices: 254637--254707 Score: 135
Period size: 25 Copynumber: 2.9 Consensus size: 25
254627 TATCCGCAAC
254637 CGTCAAAAACCTATACAACGTATTA
1 CGTCAAAAACCTATACAACGTATTA
254662 CGTCAAAAACCTATACAACGTATTA
1 CGTCAAAAACCTATACAACGTATTA
254687 CGTC-AAAACCTATACAACGTA
1 CGTCAAAAACCTATACAACGTA
254708 CTCTTGTGTA
Statistics
Matches: 46, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
24 17 0.37
25 29 0.63
ACGTcount: A:0.44, C:0.25, G:0.08, T:0.23
Consensus pattern (25 bp):
CGTCAAAAACCTATACAACGTATTA
Left flanking sequence: Indices 254137 -- 254636
TTTCCTCCATTGCTCTGGCGCATCGACCAAATTCATCTCAAAACCAAACGAGGTGATTTATCACT
TGATGAAACTTAAAATACCATTGTCGAGATGCTTACTTGAGCCCATAGATGGATTTCTTTCTCCC
GACACAAAGCTTTCTGGCTGCACTATATCGTCTCATCAATGTCACCATTGAGAAAGGCTGTCTTC
ACATCCATCTCATCTGCTGTAACTCAAGATTTCAATGCGCTACTAAAGCCATTAGAATCCTGAAA
GATTCGAAGAAACCGGAGAGAGAGTCTCTTTATTTATAGTCGATGCCTTCTTTCGGTGTAAAGCC
CTTTGAGACAAGACGAGCCCGTGCGTCTTTCTTTTCAATACGCATATTCTTCTATCTCCGCCTTA
CCTTGAGCAAGAGGGAATCTAAAGGTTGAAATACGCATCTCGTGTTCTCTGAAATAAACAAATAC
CGATCCCTACTAGCCAATACTTTGCTTTTTAAACCTATCCGCAAC
Right flanking sequence: Indices 254708 -- 255207
CTCTTGTGTACAAACTCCTGCTTCTATACTAGACAAGCCTACTCATCTATTTTGACTACTTTATC
TCATGCGGTGCTGCTTTCAACCAACTACTATTCACAAGGGTGGGCCATGAAAATGAATTCGAAAT
ATAGAAAAAGCGATATGCCAGGTCTGGCAAAGGCCTGGTCAGATACTGATTGGTGGTAATTCCCT
TTGGAAATGGAGTTCATTCTCTGAGCCGATTAAGTACGTGTTGGTATCAGAGCACCGATTAACTG
CGCTTGAACTAGGTTGAACTCGGTCTTGCTCAACCATATCTCTTGGCTCAATCTGCTTGTGTGCC
TTGTACCAGTCACCATGGTGAGATCTCAAGTTACCAGAAAAAATGAGCAAAATGGTGAAGAAATA
AAGAAGCAGATGTATCTTGATGCTATAAGAGCTTAGAAAGCAGATTGGAGAAGAAGGTGATAGAA
GGGAAGCGAAGATGCAAAGGAAGAATGATTCTACCTACAACGTGT
Found at i:271419 original size:18 final size:18
Alignment explanation
Indices: 271396--271431 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
271386 CAGCAAGCGG
271396 ACTCACAAGCACCCTACC
1 ACTCACAAGCACCCTACC
271414 ACTCACAAGCACCCTACC
1 ACTCACAAGCACCCTACC
271432 CTAGCGCGGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.50, G:0.06, T:0.11
Consensus pattern (18 bp):
ACTCACAAGCACCCTACC
Left flanking sequence: Indices 270896 -- 271395
TTGCAAGCTCTCACATGGCGTCAATAGCGCCTCATCCCCATTTAAGGAAGTTAGCCAAATAGCCC
AATCGAATACGTAACCCGCCGCGAGCGAGAATTTGACTTTATACTGGGAAGTTTCTTAATAAAAC
TTTGACTATTTCAGTATAGACAAACGTAGCGGATTCCTTTTTCCATAATGGCGGCTGAGCTGATA
TAGCAACTCGACTACACACCTCGCAATCAGAGATAAGATCAAACACTTTTTCCCTTGTCTTGTGT
TCTTCCGACTTACCATCAAAAATGATATAAAATAGTATTTCCTCGGCGATTTTCTTTCTTAGAGA
AGGCCGCCGCCCGCTTAGTAAAGGAAGAGAGCGTAACAAGCAAGAACTAAGAGCTCAGAGCTCGA
TTCGGGCTTTGGCTGCAGGATATTTACGAACTTACTTTCCACCATCCTTCCACCATGAGATAGAT
ATCTTCTCTTTGGCCTAGCACTGGGGCCTGATGACCAGCAAGCGG
Right flanking sequence: Indices 271432 -- 271931
CTAGCGCGGGCCATGTCGATGAAGCGAAATAACCTCCATCAATAGCAGAGGCGCGCAGCGGAAAA
AAAGAAGAGAATAAGTAAGCATCTTAACTGATCGAACAGGCGCGCAGCGGGGCGAATCTTTCCTC
GTAGTCTACACCATACTCCTGAGTCAAGCCTTTCTGGTCTCGATCTTACACTCTGATAGCCTTTC
CACTATGGAAAAGACATGTATGCAGACGACTCTCGATCCTCTTTTCTCTTTCATAGGAGTTCCTG
CCTGCATTGCATCAAGTTCTCTCTTTTATCTTTCAGGTTTGCTAGCTAGCTCATCTCACTCGTTC
AGAAGCGGATGCGTAAAGAAAGTAAGTTATTTTCATCATCACCAAGGGTAGAATCAGTAGAACGA
AGAGGAGAAGGGGATCCTATTTCAACATAAACAAGCAGATGTCAAGATTCAATGGCACCGCAAGC
ACGAAGGTAAGAGTCAGGTTCGAAGAAAGTGCTCGGCCTGGTGCT
Found at i:282902 original size:16 final size:16
Alignment explanation
Indices: 282877--282907 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
282867 GGGCTTGAAA
*
282877 GTATGGTCGCAATTTG
1 GTATGCTCGCAATTTG
282893 GTATGCTCGCAATTT
1 GTATGCTCGCAATTT
282908 ACCACTTTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.16, G:0.26, T:0.39
Consensus pattern (16 bp):
GTATGCTCGCAATTTG
Left flanking sequence: Indices 282377 -- 282876
ATATCTGCATGTACACCACCAAGTAATTTTTCCAATAAAAAAGGAGTAACCCTAGGCAAAGTACC
CTAAAAGAAAAACAAGTCAAAAAAGCCATAAAAAGTCTGAATTCAATCAGAAATGGGTCTTGGAG
CAATAAATGGTACTAATGATAGCACATAGTACAAGTTCTACACTTGTCAATTTGAGTAGACAAAG
GTATGATAAAAATCAAAGTACCTCTCTGCTGCGTTCTTCGATGTTCGGAAGGTCGCATAAATCAA
CACCTCTCCTTTCGTACCTACCATGGTAACCCCTGCTCCGGGACCCCCCTAGCCCCGTCCACATA
TATCAACCAGTCTGGTCCTAAACTTCATACATTCTACAACGAAGCCTGTAAGGACCTGGGCGTTC
CGTGGATGAAAGGGAACATTTTATTGGAAAAGTTCGACAGACGTAGACATCTAGGTGCTCCAAAG
TCTTTTTCCACGGTAGGTGAGTCATCACTGAGATTGGGCTTGAAA
Right flanking sequence: Indices 282908 -- 283407
ACCACTTTGAATACTGCTTTTTATAAGGGCGGGTATCTAGTCTACGCATCTCGGAGCACCTTAGA
CACAAGATACACAGGTCTCTTTTGCCCTTGCCTCTTACCCTTAGCTGACTGCCTTCTCGCTTGCT
TAAATGGTGAAATAGAGAATCCAGTTGGGGGCTTTCCTGCTCATGATAGGTGAGGTACTCTTGGA
TTTTCTCAAAGGCTTATTGGCATTGCTCATTCCAATCCTGGGCCTTCTTTATCGCCGGGAAGAGC
GGGAGGCATTCTGACAATAAGTACATAAAGGAAAAGGAAGGGGCTCTAATACCAGCTTAAAAAAC
TCTCCTGGGTCACTGAACATCTTTCTAGCCATTCATCAATGCACCAGTAGGTTGAGTCAAGTATC
CACCCGGTATAGCTAGCTAGTATAGGGGCAGGCAGCAGAGAAAGAAGGATTCCCCGAATACTTAT
TGAAGCAGGAAGGGCCCAAAGATGCCTATTTTGGAAAGAGGAAGG
Found at i:288266 original size:15 final size:15
Alignment explanation
Indices: 288246--288276 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
288236 AGGGCCAACC
*
288246 AGCCAATTTTATATT
1 AGCCAATTGTATATT
288261 AGCCAATTGTATATT
1 AGCCAATTGTATATT
288276 A
1 A
288277 TATATGAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.42
Consensus pattern (15 bp):
AGCCAATTGTATATT
Left flanking sequence: Indices 287746 -- 288245
CCTCAATAAAGTTCCTCTTGCTTACTTAGATTATGTATGTAAGATTTGCTCAACTGCACCCGCAC
GCGAGTATCCTTCTAAGTGGGAGAAAGAGAGTAGTGCCAGGGAGAACTTCGGTAGCATAAGAGAA
TAGAGATAAGCAAGCCTATTCTTTAGCAATAGAGAGAGGGGAGCATAATAGAGAGAGGGGTTCGT
TCTTCTCTTGGTCCTTCTTGTAATGCTATTTAATAACCGGCCCCAACCAAGCAGCTTATGTGTAT
AAAGAGATGGGTTCTTTTCTTAACTCAAGATTAAGACAGCCGCCTGCCTCTTGACAAGGGCTGAA
TTGATAGGTAAAAAGCATGTGATAATCTTAGTACTTCAAAACAGTATAAAAGAGTGAGTCAATGC
ATTGAAGAAGTCTTGTTTAACAAGAGCCCTACACCCAAAGACCCAAAGAAGTGAGTGAAATGGGT
CCCATTGGCCAGTGTGGTATAATACTAAATTTCATAGGGCCAACC
Right flanking sequence: Indices 288277 -- 288776
TATATGAAAAATGCGGGGTAGATATACTTTTTGAAGATAAGAGTGAGTTAGGCCGGCTTTGTCCA
CGTAAGAGTGAGTTAGGCCGGGTAGGTAGCAAAACTAGCACCCAATATTCGATGGATGCGGCTCT
TAGCAGCCAAATTAGCATACGTAAAAATAGACTCTCTCTCTTGATACGAAAAAAGTAACCGAGCT
TTGTTTTTCATACTTTCCTCTCTCTCACCCCTCTCAAGTTTTTCTTGAACCGCACCTCCTTGACA
AACCTACTTTGATATGATCCGGTTGGTTTCGCTGAATGAAAATACTACCTTGGTGTTTAAGTGTA
AAAAAGAGGTTTTTCACTTTTTCTAGTTGTAGTTGATTAGGCATGGGAGGACGTACCTGAACCCA
CTTCCTGAAAAATGCGGAATTTCATTCAACTTAAATATATCTTCAATTAGCCCAGGCGCCCCTGT
CAAGCCCTTATTCTTCCGATGTCGATCACGGAGAGTTTAGAAGTT
Found at i:301923 original size:24 final size:24
Alignment explanation
Indices: 301891--301942 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
301881 TTTCATCTAT
301891 ACTACTAGCTGCCTATCACATAAC
1 ACTACTAGCTGCCTATCACATAAC
*
301915 ACTACTAGCTGCCTATCACATTAC
1 ACTACTAGCTGCCTATCACATAAC
301939 ACTA
1 ACTA
301943 ATGCAACCCT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.33, C:0.33, G:0.08, T:0.27
Consensus pattern (24 bp):
ACTACTAGCTGCCTATCACATAAC
Left flanking sequence: Indices 301391 -- 301890
CATTGCATTTGATCAATTGTTTATTCATTCACAATATATTTGTTGATGTACCGCAAGAGGAAGGA
GATTGAGCAATACTTTCAATGGGCTCCCTCTAATGGCATCTTTCTTAATTACGGTGTCGTGTTAG
ATAAAGGTATTCACATATCTCCTCCTAAACCAATACCTAAGAAGTGCTTTGAGAAATGGTGTAAT
TACATTGTCTATCCTAAAGACATGAAAGCTAGCGAGAGGAGGAAGTTTATAAAGAATCTTGATAG
CGCTATTGAGCACTACTATTCTTACTGTAGGGCACTAGGCTTTCAAGATAATGGTTCTACTCATG
GATTGATTGAGCATTATAATCGATGGTGCTCTGAATTAGAATATACTATTGCCAGCGGTTTCAAT
AAAGCACTACAACCTAAGTAAGTTTACCTTTATTGGCTACTCATCATTATACTCTATCTAACCTT
TTCCTACTCCTCTATACCGAGCTCTCTATAAACACTTTCATCTAT
Right flanking sequence: Indices 301943 -- 302442
ATGCAACCCTTACTCTATAAGGGGATTAACCTTCGCGAAACAAAAAACAATGCTTAAGTCGAGAT
CGAATCTGAAGAATCTCATTTAGGATCAAGGGCGAAGTAAGATGACCGGCGATACGACCCCGCAA
GGCACTACTGTAAAGCTCATTGGTCTCAACGCCTTCTCAATGGCAAATGGAAACTGTCAAGATTG
TCGTCTATATACGAAAAAAGTGGCAAATAGAAGGAAGAGAGAGCCAAAAAGAGATTGTATGACAA
GAGCTATGGAAAGCTCCTTTAAGATGCAAGAATAGAAATCCCTTGGAAAGACCCCTACTTTATGA
TAAGAATAAGTTTCGCAACCTATGGATCCAATTCTGGCTCGTGACAAGGCAAGGAAATTCCTCCT
TCGATCAGCCGTGGCAATGAGACCCTTTCGTCGTGTAAAAGGAGCACTATCGCCATTTGTGAGCC
AGAATAAGGTAAGCACACATGAGAAAGCTGCCTAAGCATGATCGG
Found at i:318777 original size:30 final size:30
Alignment explanation
Indices: 318736--318792 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
318726 TAGGCAAGCC
318736 AAGCCGGTAAAGACCTAATCTTAGGCAGAA
1 AAGCCGGTAAAGACCTAATCTTAGGCAGAA
* *
318766 AAGCTGGTAAAGACCTACTCTTAGGCA
1 AAGCCGGTAAAGACCTAATCTTAGGCA
318793 TCGATAGTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (30 bp):
AAGCCGGTAAAGACCTAATCTTAGGCAGAA
Left flanking sequence: Indices 318236 -- 318735
AATCCGCTCCGCGCCTTGATCTATTTACTTACTCGGGACTATATAGTTCTTAATATAGCTAGTGC
TTACTTTTCATAAGGTATAGTTACTGGTCAGATTATAAGTCACATACATTTAGTTGTAGTGCCGC
AAGGAGATTAGTGTTTGCGGTTGAGATAAACTCTCTATTTCCAGTCTTTAACGCATCCATTCCTA
GGGCTTAAGCATTGTTGAGCTTGACTTGTTCTAGCATAAGCCTTCTAGTAGGCCTAGCATTCTAA
GCAGCCGCCTTACTATACGCATAAAGTTGAGTTATTTTAGTACCTCGCACCACAATATAAGTATT
ATTCTAAGTAGGATCACCCACATTTATTTACTAAGATTTTCTTTATTCAAGACACCAACCAGGAT
GGTTTGAAAATATCTTTCTTAATCTAATAATAAAGAAGGTAGCGTACTCACTCTTATAGTATAAG
CTTGTACAAGTAAGCCGGTATTAAACTACTCTTTTTAGGCAAGCC
Right flanking sequence: Indices 318793 -- 319292
TCGATAGTAGGTATTGTAAATTTCTTCTTTCTTATTTGAAAATATCCTCAACCACCAGAGAAGGG
AAGTAAGGAAGAGTATACGGATAAGATATAAGTCAAGGTGGGGCTAAGACCTCTAAGTCAAAGAG
TGAGGGCGTTAGCGGGTAGTATTTTGGAATGCTGATGTATTTGATTTCTAAACCATGGATTCGTA
AATGACCTATTTAGTTCAGGATGAAATATTGATTGACTTCCCATTATACCCTTCTTCCAGCGAAG
TGCTTTAACTCTCTGACATCTGCCCTCTCTTCCAATCAAGTATCTAGAGAAGGTAGCGAGCCTTT
TGAGGTATGGCCTGATAGCGCCTTATAGTCTTGACCCGAATGCTTGAATTTCTGACCTCACAGGT
CTCAAATAAATAGACTTTACTATCCTCTTAAGGTTATCTATGCCCTCAGACATTGATTGCTATAC
AGAATTGAGCATAAAGTACTTGAATTATTATTATTATTCTGAGGC
Found at i:327570 original size:22 final size:22
Alignment explanation
Indices: 327516--327564 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
327506 CTTTAACTAG
*
327516 AAGTACAAATCATGGGAAATCT
1 AAGTACAAATCATGGGAAATAT
* *
327538 CAGTACAAATCATGGGGAATAT
1 AAGTACAAATCATGGGAAATAT
327560 AAGTA
1 AAGTA
327565 ACAATCTTAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.45, C:0.12, G:0.20, T:0.22
Consensus pattern (22 bp):
AAGTACAAATCATGGGAAATAT
Left flanking sequence: Indices 327016 -- 327515
ATTATAAACCTTTTCTGGTCAAATCAGCAGGCCTGTATGCTACCATACACGTTCTAGTTCCCAAT
TTATTTTATTCCAGAAAATAGAGTGTTAGATAAGCCCCTGGTTGATATGGTATGACCCAAACAAA
AACCTAAAAAAAGGTAGTAAGAGTACTAGACTGTATAAGCACAGCTAGCTTCAATTGCATTTTCA
TTGCCGGAAATTGCGAATTTCAAAATTGATTCCAAGCCTTTACAGGTGCCATTGGTTACTAGTCC
AAATCATGGTTCTTTCTCTCTTTTTTTTGCTTACATAGACCGTGTGAAGTGCTTGAATGTGGTAG
AAGCTGATCTTGCTTCAGTTCTTATGCGTACCGTAGAATGGGTTTTTTGTAAAATTTAGCGGAAA
TCTCAGTCTACATGTTCCTAAATAAAAGTCGTAAAGTTATGAAATATGAGTCTAAATCTTTGTTT
GGTGAGTCTAAATCATCGCTAATTGAAGTCTACATCTTTAACTAG
Right flanking sequence: Indices 327565 -- 328064
ACAATCTTAGGAAATAGAAAAAAGAAAAAGTTCACTCCTCGATCAAAGTATTAGCTAGTTTTGCC
TGGTCAACATCTTCCGCTCATTTCACTAACTCTCTCTTTGGGATTGATTTACGATTGGTTCTACT
CTCTTCCACCCTCTGGGTGCGCCTATGTCATAGGAAGAATTTTCATAGATTGACTTTGGACAGGC
AAGTTGAACTATCCTATCCGGCTTCACTAACACAAGCAAGAACAAGTAGAAAACTCCTTTTGGGC
CTACTTTCCTTTTTACCTAGCTCTTAGCACTAGCGATTAGCACTCACGAGGAGAGAAAAAAGGAT
TGAATGAGCGAGCACCAGCATTGACTTTCTTTTTAACTAACCGGCCTGGCCCTTTTGCTCTAGGC
CACCCCTTTTCATTGATTTCCAGCTAGCTTTCCCACTCGCATAAGAGGAATGAATCGATGTACAT
TTCAGTTAGGGCATTGACTTGCATTTCTTTGTCCTACTCTTTTCT
Found at i:342665 original size:17 final size:17
Alignment explanation
Indices: 342642--342682 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
342632 GCGGGAGGTT
342642 ACCTACTCTACTCTCTA
1 ACCTACTCTACTCTCTA
* * *
342659 TCCTACTTTACTGTCTA
1 ACCTACTCTACTCTCTA
342676 ACCTACT
1 ACCTACT
342683 AAAAAGTGAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.22, C:0.37, G:0.02, T:0.39
Consensus pattern (17 bp):
ACCTACTCTACTCTCTA
Left flanking sequence: Indices 342142 -- 342641
GATAGTCTAGGTCAACTAATCCACCAGAACACTTAATATAATTTTTATAGGATTCTTCTTAAAAA
AATAAGTTTAGGTCGCATCGGTTGGTTCAGGTGGATCTGCCTAAGTTCTGGTTAAACTTAAAAGC
ATCTATTTCAAGCCGATTCAACAACATGCGCGGCATAGACTGTCGTCTATTTGTGCCGATTCAAC
TGCGCGGCATATCGTAACGCTAACCGAATATATGGACTCTCTTTTTTGTTTGTTATGAAATTAAA
GAAAAAAATCGTTTATAGTGGAAAATGCTCTTTATTTCACCCGCATGGTGAGTTGTATGTATATG
GGGGGAGGCCCATGGTGAATATCCTTCGATTCAGGCGTATTGGCAGGCACTTGTTAAAATTCGCA
AGCAACAACAAAGAAGCAATCAGTTACTTTTACGTACATAACCAAAACCAACTAAAAACAAGAGA
AACTTGGTTGCTATGTGCGCATGGTTTCAGTACTGGCGGGAGGTT
Right flanking sequence: Indices 342683 -- 343182
AAAAAGTGAAAAGCGGAACAACTATTATTAAGTTAATAGCTCTGATCTGATCTCCTCTTATTAAG
TAAGCTCTGCTCTCGGATACTGATCTGGTACTGCTGGTAATAGAACTGATTGTGTTAGTCTAACA
GAAACCGTGGAATCATAGCTTCGCCCATTCTCTTGTCCTAAACCCGTTCCCCTAACCTAGTAAAC
CTGTTCCCCTAACCTCAGAAACTGACCTAACCTCCTAACCTAAACTCCTTGTACCTAATAAACAT
AGGTAAGAAACTGGAACCCATATCCTTTTTCCTGTGTCAGATTTTTTGCAGGTTATACCAAACCC
ACATGCAAGTACAGGAAAGGATCAGTAAGCTCGGCACCTTCGTCCTCATCCACACCTAAAGGTAC
TTTCAATGATAGAGACCCAGATACCTTGATAGTGCAAAGTAAGAGGGGCTAAGAAGGTTTCTAAT
GGAATAGGATCCACAGAACCTAAGTGAGATGAACCATAAGACCTG
Found at i:342899 original size:22 final size:22
Alignment explanation
Indices: 342851--342892 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
342841 TCTCTTGTCC
342851 TAAACCCGTTCCCCTAACCTAG
1 TAAACCCGTTCCCCTAACCTAG
*
342873 TAAACCTGTTCCCCTAACCT
1 TAAACCCGTTCCCCTAACCT
342893 CAGAAACTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.26, C:0.40, G:0.07, T:0.26
Consensus pattern (22 bp):
TAAACCCGTTCCCCTAACCTAG
Left flanking sequence: Indices 342351 -- 342850
TAACGCTAACCGAATATATGGACTCTCTTTTTTGTTTGTTATGAAATTAAAGAAAAAAATCGTTT
ATAGTGGAAAATGCTCTTTATTTCACCCGCATGGTGAGTTGTATGTATATGGGGGGAGGCCCATG
GTGAATATCCTTCGATTCAGGCGTATTGGCAGGCACTTGTTAAAATTCGCAAGCAACAACAAAGA
AGCAATCAGTTACTTTTACGTACATAACCAAAACCAACTAAAAACAAGAGAAACTTGGTTGCTAT
GTGCGCATGGTTTCAGTACTGGCGGGAGGTTACCTACTCTACTCTCTATCCTACTTTACTGTCTA
ACCTACTAAAAAGTGAAAAGCGGAACAACTATTATTAAGTTAATAGCTCTGATCTGATCTCCTCT
TATTAAGTAAGCTCTGCTCTCGGATACTGATCTGGTACTGCTGGTAATAGAACTGATTGTGTTAG
TCTAACAGAAACCGTGGAATCATAGCTTCGCCCATTCTCTTGTCC
Right flanking sequence: Indices 342893 -- 343392
CAGAAACTGACCTAACCTCCTAACCTAAACTCCTTGTACCTAATAAACATAGGTAAGAAACTGGA
ACCCATATCCTTTTTCCTGTGTCAGATTTTTTGCAGGTTATACCAAACCCACATGCAAGTACAGG
AAAGGATCAGTAAGCTCGGCACCTTCGTCCTCATCCACACCTAAAGGTACTTTCAATGATAGAGA
CCCAGATACCTTGATAGTGCAAAGTAAGAGGGGCTAAGAAGGTTTCTAATGGAATAGGATCCACA
GAACCTAAGTGAGATGAACCATAAGACCTGAAAAGACCATTAGTGGGCTTCCAAGTATAGAGTTC
TTTTAGTTCAATCAGAGTAGCAGTTCTAAGAAAAAGATTATTAATTATATAGCAGTTGACTAGGT
GTAATGGGTTAGTTAATGAATGAAAGCCATCCACATAAATAGATGTTAATTGGACAGCATAACAA
GCAGGCGAAATGAAGCAGTGGTGTACAGTGTATACAGGAATACCC
Found at i:354939 original size:12 final size:12
Alignment explanation
Indices: 354924--354962 Score: 78
Period size: 12 Copynumber: 3.2 Consensus size: 12
354914 AGGGGAGACA
354924 AGTCAAATAATG
1 AGTCAAATAATG
354936 AGTCAAATAATG
1 AGTCAAATAATG
354948 AGTCAAATAATG
1 AGTCAAATAATG
354960 AGT
1 AGT
354963 AGAGAAGGTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.49, C:0.08, G:0.18, T:0.26
Consensus pattern (12 bp):
AGTCAAATAATG
Left flanking sequence: Indices 354424 -- 354923
CTTTCACATGTCAAAAGTGGAACTATCTTATTCTGGGTCTCTCTACGTCCCACCATTTGCTCGTC
TCGTCTATTTGGAAGGAGCAGTGTTTTTGGCTTTGGCAATACCAGCTAGCTACTTACTTGTGTGG
GAGTCCCATAAAGAAAAGCCTGAGTTATAGACTGACTAAAGAAATCCACATAAGCCGTAAGTATT
TGGTTGGCACACCTGCTTGCAAACTTGAAAATCTGATTCTAGTAGAAAGTGGACTAAGTCTTAAG
AGAGATAAGCCGGTCTTTATACACTGGCCCTACTTCGAATTCAGTCAGTGGCCAGATGCATTGTA
AGCAATTCCAGTCCCAGCTGCTGAGGCGGCGTAGTCAGCCCTACCTAAGTATTGAACAAAACCCT
CCATTTGTCTAATATTATCCTATCCTGCTAATTAAGACCACTTATTAGATCAAGGTTGGCATACA
TAGCATAGGAAAGTGGAGCTTTGGTCGTGGACAGTAGGGGAGACA
Right flanking sequence: Indices 354963 -- 355462
AGAGAAGGTCAACCCCTCAACCTGCGTATGTGAATAATTTGATGTTGAAGCGATCAAGCGGGTGC
TCAAAACCCCTTTCAGTTCGTGTCGCTGTTCATCATGAAAAAACCAGAAGTAATATGTAAACGGC
GACTGGTCTTTCATATACCAATATCGATGGACGCCTCTTCCAGCGCGTATCATATTATGTCTTAT
TTCCTTGTCAACGAGGACTTGGCTCGTCGAAGCACTAATCTCATAAGCGATGGAGGAGATACTGT
CCGTGACCTTTATACGGGTCTTCTTGACTCTTTTCAATTCAATATCGACAAATACCTAGATTCCG
GCCTCGCTTCCGTGGTCAAGGACCAACTTACTCGGAAACTCATCAACAGTATATACATGCCGCTA
GTATATGGGAAAACCCGACACAGTGCCAGAGAAGACATACTTAAGGCTCTTCACTTTGCGCTTTC
TCAAGGAGAGGCATATAAGGTAGCGGATGCGTTATACCGATTCTG
Found at i:366338 original size:24 final size:24
Alignment explanation
Indices: 366306--366354 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
366296 CCTTGTAATA
366306 CTATATAAAAGAGAAGCTAACTTC
1 CTATATAAAAGAGAAGCTAACTTC
366330 CTATATAAAAGAGAAGCTAACTTC
1 CTATATAAAAGAGAAGCTAACTTC
366354 C
1 C
366355 GATACGATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.45, C:0.18, G:0.12, T:0.24
Consensus pattern (24 bp):
CTATATAAAAGAGAAGCTAACTTC
Left flanking sequence: Indices 365806 -- 366305
TTCTTACTTGGTAATACGAGGGATAGGAAGGCAGAAACAAAAGCATAAAAGAGAAGATTAAGAAC
TAGCTTGCTAAAACTACGTAAAGGACATATAGGCCTTGCAGTCTTATTAGTGAGTTTACATGTTC
TAGTTGGCTTTCAAGAATTGTAGCTATGGATAATACCTGTCTAAAAGGAGGTATACGAGAAGTCA
AGCAAGCAAGCGAAACAATGGATACGGCTTTCTATTCTTACAGCTAACCAGCTAACTGCAAATCA
AACTGCTAAGTTTCCGCAGTACTGCGGAAACGACTACCACAATTAATACACCGACAAGCTTATTT
GTTATGATAAAGCTGATAGCTAGAAATAGGAATTAAGCCGGGTGGTACGATAAGTCAAAAGCCGA
TACGAAAGGCTAAATCACTTCCTTTAACTGGAAAAAAGTATGGGAACGAACGAAAAGCTTATTCT
TCTGCCCGGGATAGTTGGCTTTCAATCTTCTATCGCCTTGTAATA
Right flanking sequence: Indices 366355 -- 366854
GATACGATAAGCAGCTGACTGGAAAACCTCTATTCCCGATAAAGCAAGCTTGCAAACTCACTACT
AGCTTGAAACCTTATAGTGGGCTTCTTTCGCTTTAAAAAACACTATATACGAGAAAAAACAACAA
CTCAACAACGTTGCTTGCAAAGGGCAAGGACGCTAGCAGGTGTGGCTAGGCACGTAATCAAGGGT
GCCGGTATGCACCTATTTATTATAGAGTGCTTTCTTTATTTGGCATACCTCTTCATTGTATCAGT
CTATAGGCCTTTCCAGCGTATCCATTAATTGCAATTAAGCCCTGATGCCTACTTCTGAATAAAGG
ATTGCCGGGTCGTGCTGATAGGCGTGTGCGCTACTCAAATGAGTTTCTACTTATTCAGGAAAGAC
CACTTGTTGCTATTCTACGTGCACGTCGTGCAGAGTCCATGACCCAAGCGCCAGAGTCTAAAAAT
AGGGGTTCAGATGGCGTCCTTCTGTCAGCACGTAGGGTTCCCTTT
Found at i:396513 original size:17 final size:17
Alignment explanation
Indices: 396491--396526 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
396481 TACTTGCTTG
*
396491 GTACAATACCACTTTCT
1 GTACAATACAACTTTCT
*
396508 GTACAATACAAGTTTCT
1 GTACAATACAACTTTCT
396525 GT
1 GT
396527 TCAACGTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.31, C:0.22, G:0.11, T:0.36
Consensus pattern (17 bp):
GTACAATACAACTTTCT
Left flanking sequence: Indices 395991 -- 396490
TTGTCTCATGATCCTGGTCCAACTCGCGTATACACCGGTTAAAAGTATTTACATTAAATATTATA
AGTGTTTAAACTAAACTAATATATCGAGTTGTTTACACCTATTTAGCCATTGTGATAAAATCAAT
ACTGAGGAAATCTCAAAATTCAAAGAAAAATTTATAGGTACATACGTATATATACTGATTGGAAG
TGTTTACATCTGACTAGAAAAATGTTTCCGATGATTTGTAAGATTGTTTATATCTAATTAAGATG
AGCAAATTGTGGAACCAACAGTCAGAACGCAAACAATACTAAGCAACTATTGAAACTTTATGAAG
CTTATCCACGAAATAAGTGCTTGCACCAAACTGCCAAAAGCAATAAGAAAGAAGTGTTTGCACTT
AAACTATCAGTACACTTACTCTGCCGTACAATAAATTCTATACCGAAAGAATATTCTTCTTTAAT
TTAAAAAAGAAAGGACAAATGGGCAAAATTGGTAATACTTGCTTG
Right flanking sequence: Indices 396527 -- 397026
TCAACGTTTTTTTGAAGGCTTTACAGAATATTAAGTTGGAGAAGTGTTCTAAGCTTTGAAGTCAA
CAGAGATTCGAGGAAATAAACGGATCTGCGAATTCGGGATCCCAGCCAGGGAAACTCACCTCCAG
GTAGGCAATAGGGTCCACTCATTCCGAAATTAGGAATATACAATTGAGAGGCTTCTTTACATCAT
GCACAGGCTAATGGAAAGGCTGACGATGACTTGCTTGGAACCTATATAGTAGCAGGGGTTTGTCC
ACGACCAAGAGTATGCTCCTCCTTGTGATCCACAACACGCCACTTCTCAGGTGGAAACACCATAG
GTAAATTGCTAGCCAAAGGTAAACCTTCAATTCCAAATAAGGAAAGTAAAAAAAAAGTTTCACTG
CCATTAAAGATACTTTAATTGGAATACATTGAAGAAAGAGAAGAGGTCGAAAAGACTATAAGTTG
CTTATATACATAACTACGCCAACCGAAGGGCTTTCTCAAGCAAGA
Found at i:406952 original size:13 final size:13
Alignment explanation
Indices: 406934--406960 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
406924 CCGTACTTAG
406934 TTAGTATCCGTAC
1 TTAGTATCCGTAC
406947 TTAGTATCCGTAC
1 TTAGTATCCGTAC
406960 T
1 T
406961 AAATACAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.22, G:0.15, T:0.41
Consensus pattern (13 bp):
TTAGTATCCGTAC
Left flanking sequence: Indices 406434 -- 406933
AAATAAAAGTGCCTTTTTTAAGCATTGCGGCCTTGGAGGAGGGATTCTTGCTTATATATTTCTGC
AGGGAAGGAGGAAGGAAGGGAGGGAGTCACGACGGAGAAGGGTGAGGGGTGGTCTAGGAGGAATG
GTTTCAACGTTTCTGTAAATGGAGAAGCCTTTTCTCTGGCCCAATAGATGATAGGTAAGAGAATC
GGGCCGAATCTTAGACTGGATTACATGGGGTGCAGCTGTGGTGTGCAGAAAGTGGGGGATAACAA
GAATTTCTCTATATTTATTTCTATTTTATTGGATTCTTCTATTGTAAATTGAGTGAGCCCGCAAG
AAAGTAAATTGCATCCCATTGAAAAGATTACTGTTTGTTTGTATGCGCGTTCCTTAATTTTCCAG
AGCACTTGAGGGCTAAGTTATAGTAAAACGTGTAAGTAAAAATCTCCGGCCGGGGTTAGGCTCAC
CTTAAATAGCAACAGCATTGAAACTTTATATGTATCCGTACTTAG
Right flanking sequence: Indices 406961 -- 407460
AAATACAATCGTTGTTGTCTACGATTAAAGAAAAGTATATGCACTATGATTCCGTTAGTAGAGTA
CCTGATTTTATTAATAAAATGAGTAGAGAAGGAGAACAATTAGCTAAGGAGTATTTATATCCTTT
GTTGTGATATCTCATCTGAAGTGCGCTCTCTAGTGAATGGATTAGATACGTATTGCGGGGATTAG
TAGATATAAATTTTTTTTAATTACTGTGAAAAGCAGCCGGCTCAGTAGTGAGAGCATCTACATTT
ATTGATAATGTGAGTTATAAGAATTAAGCACGAGGTCTATGACCGGCGAAGTAAAAGAAAGTAAG
GTTGGCGGTAGCGAGCAAGCATCAAAAGAAGTTCATACTTCGGCTGAAGCTAATAAAGCTGCTAA
AACCAAAAAAGGTCGTGTGGTAGCCCCCCCTACTACGAAATAGCTGGTAACTTGGTAGAAATTCT
TTAAAAGAAAAAGGAACATTCATTGACTATAAGATGTGGAGTGAC
Found at i:416493 original size:21 final size:21
Alignment explanation
Indices: 416464--416526 Score: 74
Period size: 24 Copynumber: 2.9 Consensus size: 21
416454 GTAGTAAATG
416464 CTTCAAAATACGTCTGTTCTA
1 CTTCAAAATACGTCTGTTCTA
*
416485 CTTCCAAATACTACGTCTGTTTTA
1 CTT-CAAA-A-TACGTCTGTTCTA
416509 CTT-AACAATACGTCTGTT
1 CTTCAA-AATACGTCTGTT
416527 GTCTTAACAA
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
21 13 0.35
22 7 0.19
23 2 0.05
24 15 0.41
ACGTcount: A:0.27, C:0.24, G:0.10, T:0.40
Consensus pattern (21 bp):
CTTCAAAATACGTCTGTTCTA
Left flanking sequence: Indices 415964 -- 416463
AGTTATTTTTCGCTGAGAGTTCCGCTTGTAGTAAGCCCTTCTTCGCTTGTGTCCACCCTTGGCCT
AGTTCTCCCTTTTTTCAATCAAGTTGGACCAGTAGCAAGTTGGTGTCACCAGTAGTTTTTTTAGT
CGAAACATAGAGAGGGAAGCAGTAATTTAGTCGAAGCAGTAGTGTCTTTTTTTATTGAAGTGCTT
ACTTATTGCTTAGCACATCCGAAGCTTTCACAAACACGAGTAAGGCCTTCCTTTTTTATTGTCTT
AAGATGTCTATTTTTCTTCTTTTTTCTTTGACTTCGTTTAGTTAATCTTTGCCTGTCACAAGGTC
AATATGTGCTTTGAATGAAATGGTAAAAAGTAGAGCAACCTTTGAAGCCGAATGAACACAAAGAA
AGTGATGAGTGAAAGGGTAGTATAGTGTTGTGCTAGACTCTAAATGAAGGTGGAACATTTTCATA
TTCGTGAGCTGATCAAAGAAAGGAACTTCCCCTATGTAGTAAATG
Right flanking sequence: Indices 416527 -- 417026
GTCTTAACAACGTCTGTCCCGAAGAAGATGGGATGTCGGTTGTAAACTTTATGGTCTAAGTAAAT
AGCTTCATCCATCAAAAGGATGCTGCTATAGCGGCACATGTTGTGTATCATGCTAAACACAGATT
AACTTCAAACATTTATACGGTACATGACTGCTTTATTGCGCTCCTCTAGGAGGGAGTTTTACTCT
TATTTAAACTACTTGCATGGCCGATTTTAAACACCCTATAATATATTCTATATTTCGGTGTGATG
TTATATATTAAACTACACAGGTTTATGTTTTTTCTTCATTTCCTGGCTGTTTGTTTCAAATACAC
TAGGCAATTGGCTAACGTAACAAAGAATGTAGGAGAAGCATTATCTGACTATCTTTATCGTTACC
ATCGTGCTAGAGGGGTAGTAGAGCTTTTGCAATTCCAACTTTTCTTTATGGGTTATTGCATGGTC
CTTTGTTAGAGGAACTAGACTGACGTCCTAGGTCGAACTTGCAAG
Found at i:416534 original size:20 final size:21
Alignment explanation
Indices: 416470--416543 Score: 66
Period size: 24 Copynumber: 3.5 Consensus size: 21
416460 AATGCTTCAA
*
416470 AATACGTCTGTTCTACTTCCAA-
1 AATACGTCTGTTGTACTT--AAC
*
416492 ATACTACGTCTGTTTTACTTAAC
1 A-A-TACGTCTGTTGTACTTAAC
416515 AATACGTCTGTTGT-CTTAAC
1 AATACGTCTGTTGTACTTAAC
416535 -A-ACGTCTGT
1 AATACGTCTGT
416544 CCCGAAGAAG
Statistics
Matches: 47, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
18 8 0.17
19 1 0.02
20 6 0.13
21 11 0.23
22 4 0.09
23 2 0.04
24 15 0.32
ACGTcount: A:0.26, C:0.23, G:0.12, T:0.39
Consensus pattern (21 bp):
AATACGTCTGTTGTACTTAAC
Left flanking sequence: Indices 415970 -- 416469
TTTTCGCTGAGAGTTCCGCTTGTAGTAAGCCCTTCTTCGCTTGTGTCCACCCTTGGCCTAGTTCT
CCCTTTTTTCAATCAAGTTGGACCAGTAGCAAGTTGGTGTCACCAGTAGTTTTTTTAGTCGAAAC
ATAGAGAGGGAAGCAGTAATTTAGTCGAAGCAGTAGTGTCTTTTTTTATTGAAGTGCTTACTTAT
TGCTTAGCACATCCGAAGCTTTCACAAACACGAGTAAGGCCTTCCTTTTTTATTGTCTTAAGATG
TCTATTTTTCTTCTTTTTTCTTTGACTTCGTTTAGTTAATCTTTGCCTGTCACAAGGTCAATATG
TGCTTTGAATGAAATGGTAAAAAGTAGAGCAACCTTTGAAGCCGAATGAACACAAAGAAAGTGAT
GAGTGAAAGGGTAGTATAGTGTTGTGCTAGACTCTAAATGAAGGTGGAACATTTTCATATTCGTG
AGCTGATCAAAGAAAGGAACTTCCCCTATGTAGTAAATGCTTCAA
Right flanking sequence: Indices 416544 -- 417043
CCCGAAGAAGATGGGATGTCGGTTGTAAACTTTATGGTCTAAGTAAATAGCTTCATCCATCAAAA
GGATGCTGCTATAGCGGCACATGTTGTGTATCATGCTAAACACAGATTAACTTCAAACATTTATA
CGGTACATGACTGCTTTATTGCGCTCCTCTAGGAGGGAGTTTTACTCTTATTTAAACTACTTGCA
TGGCCGATTTTAAACACCCTATAATATATTCTATATTTCGGTGTGATGTTATATATTAAACTACA
CAGGTTTATGTTTTTTCTTCATTTCCTGGCTGTTTGTTTCAAATACACTAGGCAATTGGCTAACG
TAACAAAGAATGTAGGAGAAGCATTATCTGACTATCTTTATCGTTACCATCGTGCTAGAGGGGTA
GTAGAGCTTTTGCAATTCCAACTTTTCTTTATGGGTTATTGCATGGTCCTTTGTTAGAGGAACTA
GACTGACGTCCTAGGTCGAACTTGCAAGATCCCCTTTCTATTTCT
Found at i:420871 original size:22 final size:23
Alignment explanation
Indices: 420832--420874 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
420822 ATCTATATGA
420832 GTAGAAAGCCCCCAGTTGTGAAT
1 GTAGAAAGCCCCCAGTTGTGAAT
**
420855 GTAGAAA-CCCCGGGTTGTGA
1 GTAGAAAGCCCCCAGTTGTGA
420875 CCTTGAATGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.28, C:0.21, G:0.30, T:0.21
Consensus pattern (23 bp):
GTAGAAAGCCCCCAGTTGTGAAT
Left flanking sequence: Indices 420332 -- 420831
GAGGGTAGAACCCTTATACATCACTCAAAGTCACTACTGTAGCCTACTAGGAAAAAAACCTCTTC
CTAATCTAGCTATCAAAGTTCCCGACTGGCAAATACAAGAATAAGCAGGGAGAGGAAAGCGATCT
TCCTGGTGAAAACCAAAAGCAAAGTTCCAGGAAACTACTTTTCAAAAGAAATGCTTTAATCTCGG
AAGAGCCACACCATCCATATGAAACTACTGGAAAATCCCTGAGTGCACAGCAGGGAAGCGGCCCT
ATTATATTAAGGGCGCTTTCATTCAATACTTTGGCATTGTTTCCGTTGCATCAATTAGTGATAAG
CGTCTGATCCTATAAAGTAAAAGAGATTGGTTCATTTTAAGTGAGTGGAAGACTGATCACGAACT
GATTGGAGACACGGCTTATTCTTAATGGACAGCTCAAGGTAAGCAGAACCGCAGATTAAGTATTG
AAGAATCCGATCCGTTGAATGGGGTATCTATATTAATCTATATGA
Right flanking sequence: Indices 420875 -- 421374
CCTTGAATGGGTTCGCCTTCTAACAACTGACTACCCTCTCCAGCTGAAGGAACAGTTCGCGGACA
TCGAAGGGATGGGACCCCCGATTCTTGCCATTGCTTTTCAAGTCGTGGTAAATCTATAACTACGG
CGGGTTCCCGGCCAAACTGAACGATTTGCTTTCCAAAAGCAACATACTTCTACTTTTCTCGTTCT
ACGAGATTTTCCCCAACTATTCTTAATTTTGTAAAGTAACATTCGCCGGGCAATTCAAAATATCG
AAAGATCCAAAACAACCAAGTAGTGGAACCGGGGGCCTATACCATGAAAAAAGAAGAAGTCTGTT
TTCTCGCTTTTTCCAATCGGCCTTACAAATCACGTTGCTCGCGAACCTTTGGATGAAGACATTCA
AGCGGAGTAAATAGAAGATTTGTTGTTCGCCGCGAAAGGAGTGAAGAATAGGATCCAGATAGATT
ATTACTGGCTTGACCACTTCTCGTTGAAGTGGAATCCTTCGCCCT
Found at i:431832 original size:18 final size:18
Alignment explanation
Indices: 431805--431841 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
431795 TCTCATAAAC
431805 TCATAGATAGTGTATGTA
1 TCATAGATAGTGTATGTA
*
431823 TCATATATAGTGTATGTA
1 TCATAGATAGTGTATGTA
431841 T
1 T
431842 GATTTTTCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.32, C:0.05, G:0.19, T:0.43
Consensus pattern (18 bp):
TCATAGATAGTGTATGTA
Left flanking sequence: Indices 431305 -- 431804
TCTCCGGAAGGAAACACTGGTAGGATATCGGAAATCAAGTGACAGAACTGTTGATGCTACCTTTC
ATATCTATCAACAGAACCGCAATTGAAAGCTTACACCCACCCAAGGAAACTGGAAAGATGGCTAT
GCTTAACACAAGCGCTCAGTTCATTCCTTCTTTTCTTCCTTCGATGTAGCTACGTTTCTGCTTCC
CTATCCCGATTGCTCTTACTCTTCCTTTTGTGCTTGGTTGGTCCGATTGCTCTTGTTCGGCTGAA
GAACTCTTTTCCTTCAATTTATTCTCTCCGGATGCGATCTTCCAAAAAGTAAAATTCTGACGCCG
GCGGCTTATGAACTGGATTATTTCTTTTTTTTTAGCTTTCCTTTGCCTTGGGAAGAAGTGAGCAC
TTGATTTTGGTACTTCATTTTTTGGAAGAGACTTCATTTTTTCATATATAGTGTATGTTGTTTGT
AGTGGCGCATTCGCATATTTTCATATTCTCTGTGCTCTCATAAAC
Right flanking sequence: Indices 431842 -- 432341
GATTTTTCTTTTTGTGATTTGGAATTGGTTCGCTACCCCCCCCTTTTTGTTTCTAAATCTACCAT
CAAAACAAAGCGGGCACTATGGTGAGACGTGAAAACACCCGATCCCTTTCCGACCTCGATATGTG
AAATCGTCTTGCGCCATATGTACTGAAATTATTCGGGAGACATGGTACAAGCCCGCAGAGAAAAA
ATGAAAAATACTCTTGTTTGGTTCACTTGGTAAGGGGTGGATGAAGCGAGGTAGGTATGTGGGAG
GCTATACCTACAAATGGAGGAAGAAGTCTGGTGGTTTAGTTTTTCGAATCATCTTCTTCCATTTC
TTCTTATTCTTTGTATTCTTACTATTTGTCTTCTTCCTATCATTCTCTATGTTCTCTGGAGTTTT
GCTAGTAACAGGTTTAGGCTCTTCAGGTATTAGTTTTGTCGGGTTCTGTAGGTGGCTCGGCTTGC
TCACACTTGGAAGTGGTATCCATCTGTTCTATTGGCGTATCAGTG
Found at i:453645 original size:23 final size:24
Alignment explanation
Indices: 453619--453672 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 24
453609 CTTTTTTTGC
453619 TTTGGT-GAAACTCGTATA-TAGTG
1 TTTGGTAGAAACTCGTA-AGTAGTG
453642 TTTGGTCAGAAACTCGTAAGTAGTG
1 TTTGGT-AGAAACTCGTAAGTAGTG
453667 TTTGGT
1 TTTGGT
453673 TAGCGGTCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
23 6 0.21
24 1 0.04
25 21 0.75
ACGTcount: A:0.24, C:0.09, G:0.28, T:0.39
Consensus pattern (24 bp):
TTTGGTAGAAACTCGTAAGTAGTG
Left flanking sequence: Indices 453119 -- 453618
AGCAAGTGTGAGTAGCTCTTTGGCTAGGTCATGTAATCTCAGCTGAAGGCCACAGACCCAAAGAA
GGTTGGAGCAATGGTGAAGTCAAGAAAGTAGGAGTTTTGCATATAGGTGTGGACTACTTTTTGAA
TAAAATCGGCAAGTCGTATACGGTAAATGTCCAAGTATGACGTTTGCGTTTCCTACTTTTTTCAG
AAAAGCGTCATCGCGTAGTAGGGAAATCGGTCGGTAGTCCGAAAATACCGGGTTTACTACCTACT
TGACTTATTTCGTAACTGCCGTAGTTACTCGCTGGAAGCAAATCCAACTAAACGGACAGCAGCGG
TAGGCTTTCGTGCTTGGTACCTTCACCTTCTCTTATAGAGTCTGAAGAAAGCTTGACTGCTAAGT
CAGGGGATTGGGCAGATAACATAATTCCCTTTGATTGCATTTTTTCATAGAAAATAGAGATTTTT
TTCTCAGTGCCCGACGGCGCACTGCGAAAAAGCTTCTTTTTTTGC
Right flanking sequence: Indices 453673 -- 454172
TAGCGGTCAAGTATTGAGTTTCAGCTAGTAAGGCGCGGAGCGGATTACTGAAAACACTAGGCAAA
GGAATTCTCATAGTTCATTGAGTTAAGGGAGTACCATTCGTGAGGGGTTCGTGGAAGAGTTGGCT
TTGATTTATTCCCTTTCTATCTACGCGATGTGGCAAAAAAGACTGATTGTTCGAGATATGCCATG
CCTGCATTAAGATTTAAAACGTGTCGTCTACTTCCAGGAAATGTTTGGAACAGAGAACTTTCTAT
AATACAACGCCGCATTCTCCGAAGATTGAGGAAAAAGAGGAAATCCATTAAAAGAAATCTTTCTA
TGAGAGAAAATCTAAACAGTAACATCAAATTACAAACTACACGAAAGTTGTCCCTTTTTTATGGG
GGTTTACCCATAAGGGAGATGCACAGAGGAAGAGAACGAACTTCATATATCCCTTTTTTACTCAA
TCAAGAAACAAGATTAGACGTGATTTTAGTTCGTCTCCATTTTAG
Found at i:453655 original size:25 final size:25
Alignment explanation
Indices: 453625--453672 Score: 80
Period size: 25 Copynumber: 1.9 Consensus size: 25
453615 TTGCTTTGGT
453625 GAAACTCGTATA-TAGTGTTTGGTCA
1 GAAACTCGTA-AGTAGTGTTTGGTCA
453650 GAAACTCGTAAGTAGTGTTTGGT
1 GAAACTCGTAAGTAGTGTTTGGT
453673 TAGCGGTCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 1 0.05
25 21 0.95
ACGTcount: A:0.27, C:0.10, G:0.27, T:0.35
Consensus pattern (25 bp):
GAAACTCGTAAGTAGTGTTTGGTCA
Left flanking sequence: Indices 453125 -- 453624
TGTGAGTAGCTCTTTGGCTAGGTCATGTAATCTCAGCTGAAGGCCACAGACCCAAAGAAGGTTGG
AGCAATGGTGAAGTCAAGAAAGTAGGAGTTTTGCATATAGGTGTGGACTACTTTTTGAATAAAAT
CGGCAAGTCGTATACGGTAAATGTCCAAGTATGACGTTTGCGTTTCCTACTTTTTTCAGAAAAGC
GTCATCGCGTAGTAGGGAAATCGGTCGGTAGTCCGAAAATACCGGGTTTACTACCTACTTGACTT
ATTTCGTAACTGCCGTAGTTACTCGCTGGAAGCAAATCCAACTAAACGGACAGCAGCGGTAGGCT
TTCGTGCTTGGTACCTTCACCTTCTCTTATAGAGTCTGAAGAAAGCTTGACTGCTAAGTCAGGGG
ATTGGGCAGATAACATAATTCCCTTTGATTGCATTTTTTCATAGAAAATAGAGATTTTTTTCTCA
GTGCCCGACGGCGCACTGCGAAAAAGCTTCTTTTTTTGCTTTGGT
Right flanking sequence: Indices 453673 -- 454172
TAGCGGTCAAGTATTGAGTTTCAGCTAGTAAGGCGCGGAGCGGATTACTGAAAACACTAGGCAAA
GGAATTCTCATAGTTCATTGAGTTAAGGGAGTACCATTCGTGAGGGGTTCGTGGAAGAGTTGGCT
TTGATTTATTCCCTTTCTATCTACGCGATGTGGCAAAAAAGACTGATTGTTCGAGATATGCCATG
CCTGCATTAAGATTTAAAACGTGTCGTCTACTTCCAGGAAATGTTTGGAACAGAGAACTTTCTAT
AATACAACGCCGCATTCTCCGAAGATTGAGGAAAAAGAGGAAATCCATTAAAAGAAATCTTTCTA
TGAGAGAAAATCTAAACAGTAACATCAAATTACAAACTACACGAAAGTTGTCCCTTTTTTATGGG
GGTTTACCCATAAGGGAGATGCACAGAGGAAGAGAACGAACTTCATATATCCCTTTTTTACTCAA
TCAAGAAACAAGATTAGACGTGATTTTAGTTCGTCTCCATTTTAG
Found at i:454659 original size:18 final size:18
Alignment explanation
Indices: 454633--454686 Score: 90
Period size: 18 Copynumber: 3.0 Consensus size: 18
454623 GCCTTTTAAA
*
454633 AGAAAAAGAAGTCCTTTT
1 AGAAGAAGAAGTCCTTTT
454651 AGAAGAAGAAGTCCTTTT
1 AGAAGAAGAAGTCCTTTT
*
454669 AGAAGAAGAAGTACTTTT
1 AGAAGAAGAAGTCCTTTT
454687 TCTTCTTTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 34 1.00
ACGTcount: A:0.43, C:0.09, G:0.20, T:0.28
Consensus pattern (18 bp):
AGAAGAAGAAGTCCTTTT
Left flanking sequence: Indices 454133 -- 454632
AAACAAGATTAGACGTGATTTTAGTTCGTCTCCATTTTAGTAAAACTCTTCCTCAAGCAAGGCAG
CTGATAAGTCATCGAAAGGTTTGTGTGAATAATAGACTGGTAAGCATTACTCATTGGAAAGTTTC
CCATGGTGATCTCATATCTTTTCAAGAAAATGAGGTGAGAACCCGCAGTGAAGAAATAAGGAGAT
CTTTCTATATTGACATATTAGTTGGAAAAATAATAAGAAAATCCCGTCCGGTCAGATGGTGGAGA
AGAACCAAAATAGGATGGTTCCGCTTACTAAAAAAAAAAAGGAAGTGTCGGCTACTACTAAAATC
CCGCTTTTTGAAAGAGTTGCGCTCTTCTATAAAAAAAGAAGACTTAGAAAGAACAAAGAAGTTGT
TTGGATCCGTAAAAGTATGCTTAGGAAGTTACTTCGCTGAGCACAATAGAATTATAAGGAATTTT
TTTCATTTAAAATACCACTTCTTATTGAAAAATCTGCCTTTTAAA
Right flanking sequence: Indices 454687 -- 455186
TCTTCTTTATATAAGTATTGCTATGGATCCCCTTTTACTAGGAAGATCAGAATAAAAAGGATCGA
ACTACTAAAAAGAATAAAAAGGATCCAACTACCTACTCATTATTCGGAGGTGAATCATAGAACAC
TAAAAGCTGTGGTATTTTATGGACCTAACATCGGTCACATCCCTCACGACATAAAATTCAAAGAT
ATCAACCTTCTTCTTTGGAGCGGAAACGGACGTGGTCAACCCATATAAGAAAAGACAGGCATAGT
CGCTCATAGGGACATCTCTATCCGGATGGAGGAGGATAGTATATAGATAGATCTATAGAGATCTA
TATAAAAGGCTATTTGGATAGAAATAAAGATAGGGATCCCTCCCCCCAACAATATAAATATCTGA
AAAAAGTGCACTTTTTTTTTTACTACTATACTTTTTGAACTTTTTGAAAAGAAACATCGTTCCTT
GGTCGGAGCGTAGATGAGCGAGCAGAGCCCAGTAACGAGGTCAGA
Found at i:454676 original size:21 final size:20
Alignment explanation
Indices: 454624--454679 Score: 71
Period size: 18 Copynumber: 2.8 Consensus size: 20
454614 GAAAAATCTG
*
454624 CCTTTTAAAAGAAAAAGAAGT
1 CCTTTT-AAAGAAGAAGAAGT
454645 CCTTTT--AGAAGAAGAAGT
1 CCTTTTAAAGAAGAAGAAGT
454663 CCTTTTAGAAGAAGAAG
1 CCTTTTA-AAGAAGAAG
454680 TACTTTTTCT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
18 17 0.55
21 14 0.45
ACGTcount: A:0.45, C:0.11, G:0.20, T:0.25
Consensus pattern (20 bp):
CCTTTTAAAGAAGAAGAAGT
Left flanking sequence: Indices 454124 -- 454623
TCAATCAAGAAACAAGATTAGACGTGATTTTAGTTCGTCTCCATTTTAGTAAAACTCTTCCTCAA
GCAAGGCAGCTGATAAGTCATCGAAAGGTTTGTGTGAATAATAGACTGGTAAGCATTACTCATTG
GAAAGTTTCCCATGGTGATCTCATATCTTTTCAAGAAAATGAGGTGAGAACCCGCAGTGAAGAAA
TAAGGAGATCTTTCTATATTGACATATTAGTTGGAAAAATAATAAGAAAATCCCGTCCGGTCAGA
TGGTGGAGAAGAACCAAAATAGGATGGTTCCGCTTACTAAAAAAAAAAAGGAAGTGTCGGCTACT
ACTAAAATCCCGCTTTTTGAAAGAGTTGCGCTCTTCTATAAAAAAAGAAGACTTAGAAAGAACAA
AGAAGTTGTTTGGATCCGTAAAAGTATGCTTAGGAAGTTACTTCGCTGAGCACAATAGAATTATA
AGGAATTTTTTTCATTTAAAATACCACTTCTTATTGAAAAATCTG
Right flanking sequence: Indices 454680 -- 455179
TACTTTTTCTTCTTTATATAAGTATTGCTATGGATCCCCTTTTACTAGGAAGATCAGAATAAAAA
GGATCGAACTACTAAAAAGAATAAAAAGGATCCAACTACCTACTCATTATTCGGAGGTGAATCAT
AGAACACTAAAAGCTGTGGTATTTTATGGACCTAACATCGGTCACATCCCTCACGACATAAAATT
CAAAGATATCAACCTTCTTCTTTGGAGCGGAAACGGACGTGGTCAACCCATATAAGAAAAGACAG
GCATAGTCGCTCATAGGGACATCTCTATCCGGATGGAGGAGGATAGTATATAGATAGATCTATAG
AGATCTATATAAAAGGCTATTTGGATAGAAATAAAGATAGGGATCCCTCCCCCCAACAATATAAA
TATCTGAAAAAAGTGCACTTTTTTTTTTACTACTATACTTTTTGAACTTTTTGAAAAGAAACATC
GTTCCTTGGTCGGAGCGTAGATGAGCGAGCAGAGCCCAGTAACGA
Found at i:460009 original size:13 final size:13
Alignment explanation
Indices: 459991--460017 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
459981 TGCTGGTCAA
459991 ACTGGGGGATTTG
1 ACTGGGGGATTTG
460004 ACTGGGGGATTTG
1 ACTGGGGGATTTG
460017 A
1 A
460018 GGAGGGGTAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.19, C:0.07, G:0.44, T:0.30
Consensus pattern (13 bp):
ACTGGGGGATTTG
Left flanking sequence: Indices 459491 -- 459990
AGTTAGACAATGCAATAAAAATGATTTTTTATGTATGAATAAATGCTTTGTTGTTTAAGCAAAAC
TAGTATCCTTTAGGAGATAATTTATTTTGGAAGTTGTATTGCTGGTTGTTGATAGTAAGTATTAT
TACTCGTGTGTTGGAACTATTTTGACTTATTTTGATAATGACGTATTTTTCTATTATGTATTAAA
TATTATTGTCATTTGTATTATTAGAATGTTACACTCATACAAGAATTTTCGTGGAGCTAAAAATC
TGCATACTATTGACATTATGAATCCTAAATATTAAATATTTTTTTTTTAACTATTATTATTTTAG
TTTCTTAGTACCAAAATCATATATACCCTTAATATAATATATTCATTGAATTACCATGTAACATG
TATTTGTACTTTATCATATGAATATAATGACTTTGTTCGTTAAGTATTATTGGTTAGTATATAGT
AGGTATTATTACTTTCGTTTCAGGGGAGGTTAGGGTGCTGGTCAA
Right flanking sequence: Indices 460018 -- 460517
GGAGGGGTACAGATATATAATCCCTTCTTTTATACTAGCTCAACGCTGCACAGTTGGGGGGGGAA
ATTGCTTGCTTTAATAAAAAAAAGAATCCACCAGATAAGAAACGTCTCTCTCTCAAGACCTTTAT
TTATTAACGGTATGTACACAGTTTACTCCTCTGGTCCAACTTTTGACACAATTTTTTGCTGTTTG
ATTTGGTGGGTTGGTTAAGAACTAGTAAAAGAATACTCAATTTGCAGTACTTCCTGCTATATTAT
GTTAACCAACAAACTGACTGCTCTAGAAGAAAAAAAAAACAGAGAGAAAGCTGTTAATATTATAT
TATTATTATATATTATTTATAAAAATATATATTTTTTTAGCCGGTGCAAAAGATGAAACTTTACC
AGCAGGTACCGGCACTTACAACAATCAGAGTTCTACCGAACGTTCTTGCGGCTCACCCAAGCTGC
CTGATGAGACTACTAGACTAATGAGGAGGGTGTTGCAGCTCGTGA
Found at i:474565 original size:31 final size:32
Alignment explanation
Indices: 474506--474566 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
474496 TGTTTTCTGA
* *
474506 CTTTTCTATTGTGCAGATCATTTCAATTCAAG
1 CTTTTCTATTGTGCAAATCAGTTCAATTCAAG
474538 CTTTTCTATTGTGCAAATC-GTTCAATTCA
1 CTTTTCTATTGTGCAAATCAGTTCAATTCA
474567 GCATGTTTTG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 9 0.33
32 18 0.67
ACGTcount: A:0.25, C:0.20, G:0.11, T:0.44
Consensus pattern (32 bp):
CTTTTCTATTGTGCAAATCAGTTCAATTCAAG
Left flanking sequence: Indices 474006 -- 474505
AGAATGAATAATGTGAATGGAAGAAGTTGCAAAAGAGCTTGGCTGGCTATAGTAAAGGTTGTTTT
GTGGCTAGGCCCTATACCGGAACCTGGAGGGTTAGCATAGCTATGGGATAAGGAGGTAGCAGTCA
CGGTCCTGGGTACAGCAAAGTCTCATATTGATTCGGTTCTTCAGTGGGAGGAAAGTGGATTATAT
TCCGGACGTCACCACGAGTAGAATAGTACGTTTGCGGACGAAGGGAAGAAAGAGTAGTACGTTAC
CGACCTTTTCTCGTTACTCTGATTTGAATTTCGCTCTTTCCTCATCTGGCACTCGATCTCTCTTT
CTCCCCTGGCGATCTTTCTTCTTCCGATGCTCTCTTCTTTCTCTCACTGGCGATCTCTCTGCTTC
TCCTCTGGTGTCTCCTCCAGCGTAATTCAACTCTCTGGATGTTTAAATCGTTCAATTGAAGCTTA
TTTTCATCCTTTGATCTTAAAAATATATCTAGGTATGTTTTCTGA
Right flanking sequence: Indices 474567 -- 475066
GCATGTTTTGAGATCTGTTCATCAATTAGTTGATTAATTTACCTCTTCTGTTTATTTTTTTTTAG
AATTTTATTGTGTTCTAGCATGTTGTTTTGTATTCATTCAAGTATTTCAATTCAATTTCGTGATA
TTCATCAACTGATCTCTTTTCTTTCTTTTCCTACAATAAACATGCTGAGATTTGATTATTTTACA
TCTGATTTTTTATTATGTTAGATCTGCTTATGTAGATCTGATTGCTGATATACATCTGGTTATAT
TGATGTTTATTCATATAAATCTTGTTTTGTTGATAATATATCTCTGTTTTGTTATAGATCGGTCT
GTGTAGATCATATTATTCTATATTTTTCATCTAAACACATGTTTTACAGCTTGAAAAATACTATT
TGATTTATGTAAACACGACATGTATATGAAGAATATTATGTTGATTATGATTTAGGGATTTAGTT
ATGTATTTAGTGCTGATTTTTTATGAAAAAAATAAACATTCCTGA
Found at i:491084 original size:25 final size:25
Alignment explanation
Indices: 491008--491068 Score: 122
Period size: 25 Copynumber: 2.4 Consensus size: 25
490998 AGTATGAAAG
491008 AAAGCCACTGCAAAGTCTAATAAGA
1 AAAGCCACTGCAAAGTCTAATAAGA
491033 AAAGCCACTGCAAAGTCTAATAAGA
1 AAAGCCACTGCAAAGTCTAATAAGA
491058 AAAGCCACTGC
1 AAAGCCACTGC
491069 CAAGGTTCAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 36 1.00
ACGTcount: A:0.46, C:0.23, G:0.16, T:0.15
Consensus pattern (25 bp):
AAAGCCACTGCAAAGTCTAATAAGA
Left flanking sequence: Indices 490508 -- 491007
CAGACTCTAAAAAGAAAATTCCAATAATAAAATCTCCATCAAGATCAGGACGAGAAATCTGCTAA
TATCAAGAACGTCAAGACAGACTGTTTCAAGCATAACTAAAGGCATTATATTCTCCACCCCAAGT
CATAAATCTCGCCCAGGTAAGCATGTCAAGAGCACGGCTGTAGTGAAATCATTCATAATGCGTGT
TAAGTAGCCAAATAATCAAAGCAAATGAAAATAGAAATCCAAGCTTATAATATAAAGAAGATAAT
CTCGCGTACCCGACCGGAATGTCAAGACAAGAAAGCCTGTGTCCTAAGATACTATCAAGAAAAGC
CAGCCAGTAGAATAAGATAATCTAATAACAATCAAGCCAGTTGAATATGTCTCACCCGTATGGTT
CATTTGTCGAAGTACCTCGAAAGTCTTATAAGAGAATTCTAGTTCAAAGATGGTCTTATAATCAA
ATGTATCAAAGGACCCAGGAAGTTCAATAAGTTCAAGTATGAAAG
Right flanking sequence: Indices 491069 -- 491568
CAAGGTTCATATGAAACTACCTTTCAAGCTAATATGCCAATGAGTAAGAAATCCATTCAAAGAAG
AATCTATCTAATCTAGTCGAGAGTGACCTGCTTTAACCGACCGAAGTGACCTATGTTCCGTGTAC
TAATATGGAGTAGGTCCCTTCTATTCTATTATTCCTAGTCGCCTACCGATATTCTACCTAGTCGC
TATTCTATTATTCCTAGTCACAAGCCATACACCTATACCAAAGTGACCTGCCCTACTGACTCTTA
CTAAGGCCAATACGTCACTTCTTTATTCACTAACTCCAGACATTCACTCATAAAAATGCCAAGCC
CCAAGCACTACTTTACCAACTGCAAAGCACGAAGGCAGGAGCGAAAGTAGGTACTGTAAGGTCTG
ATTTCCCTGCTTAAACTACTCCTGTACTACTTGACCTATTTGCCTACTGCTACTAATCACAATGT
TAGTCTTATGTTTCTTAATACTATGCAATGCCCTAGCCTATAGCT
Found at i:499602 original size:13 final size:13
Alignment explanation
Indices: 499584--499609 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
499574 AGGGAAAGAG
499584 TCCTTCTTTAATT
1 TCCTTCTTTAATT
499597 TCCTTCTTTAATT
1 TCCTTCTTTAATT
499610 AAGCATCTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.00, T:0.62
Consensus pattern (13 bp):
TCCTTCTTTAATT
Left flanking sequence: Indices 499084 -- 499583
CGCCGCCAAATGAAGCAATTAAATAAAGAAAGGGGAAATATATTCTCAAAGGCACTCACTTACCA
AAATGCCATACTCTAACTGAGTAGCTATTAATAAATAAAAAAGCTTTCACTCGTAAATTTCAATA
GAGTATATTAGCCTCGTAAGTGGGTGAACCTCCTTAGAGGTTTCGGGTCCCTTTGCCTCTTTCAT
GTGAGTGGAATCCCATCTTTGACTCGTTCGTAACAAGGTAGGGACTGAGATACTTAAGACTGGAT
AGAATACCAAAGAAGGGATAATTGTAACTTGCCATAGGATTGCTCACAGTAAAAGAAGGAGACTT
ATAGACAGGTTTACTCAAAGAGACTTTACTAATCTTTTTCCTAGGGAAAGGGCAAGTCGTCTGGT
CTAGACCAAGAGCTCTACTAGGGATGGAGACTCTTCCCGACTCCTACTTCCTTCGCACTCGTGGT
GGGCTACCTCCTACCTACTATGAGCAATCTAAATGAGGGAAAGAG
Right flanking sequence: Indices 499610 -- 500109
AAGCATCTAGACTTTGTTGGGAACAAGGAAGGCCAATTTTCTACGAAGAAGATCGGTCCACTTAC
GCAAATACCTGAACGAGAAGGGATCAGTGCTGTAAACTAAGTTCTTTATCATCAAGGTTGGTTAT
AGCAAGGGGAAATTGGCTCAAAAAGAAGCCCTTCCTTTTGTTGCATGTCCGAAGCCATAGATAGA
TCTTGATGGTATGCCTATCTCTTTCTTACTTACGTGGACTAAAAAAATGCATTCTGCGAGGCGGT
ATGAGAATGAAGACTACAATCATAGAGATGATCTATATGCTTACATATTGGACCAGTCCTTGAAT
AGGAATGATGTGGTGGCCAAGAGATGGACCGCTTAAAGAAAGGATGCCTCTCATCAATGTAGTCC
ATTATGCTTGCTTTTCTTCACCATCTTGGCCTCAATGAAGGTAGAATGCCTTTTTCTAGGGGGGG
GTGTCCAGAGACAAATCAGAATGGAGGCTTGGGATTATTCCATCT
Found at i:515666 original size:13 final size:13
Alignment explanation
Indices: 515648--515675 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
515638 AACGTTCAAC
515648 CATACACTATTGA
1 CATACACTATTGA
515661 CATACACTATTGA
1 CATACACTATTGA
515674 CA
1 CA
515676 GACTTATGAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.25, G:0.07, T:0.29
Consensus pattern (13 bp):
CATACACTATTGA
Left flanking sequence: Indices 515148 -- 515647
ATGAAAAGGATCCAGAAATACGTACAAAAAGCAGTTTTGAGCTCTCTCACGCCTGAGGAAAAAAG
GAAATACAGTTATATACGACTGTCGTTGGGGAGACCGTGGACTGCACTGAAAGCTTAACTGCGGG
AATAAGGTAAGGGGAAGGAAAAAAAAAGAAAAGAATCGACCTAGATAGATAGAATGATGGAAATA
GTATCAGGATAAGTTGCTTATTCTTATTTTCCGGGTCAAGTTACCTTTCGGCAGAGTTGGTCTTC
GATCAGTAAGAAGAGGGCGACCTGGTTGATTTGCTTCAAGCTCCAAGCTCTTTCCAAGCTTCACT
CAGAGTCGTTCCGTTCCTCATCAACCGTTCTTCTCCATCTTCTCTCGTTCCTCAGATATCCCATT
CCAATAGCTTTGAGGTGAAACGGCGCCTTAGGTTCCAGTCTGTATAATCCTAGATAGGTGTCTTC
CCAATCTTCTTCCGATCAATGTAAGTAAGCCACTTAACGTTCAAC
Right flanking sequence: Indices 515676 -- 516175
GACTTATGACATAAACTATTTACTTACGAGACGTCACTTTGACTTGCTTCTACTGTAACGTACTG
GCTTCTTTCTACTTTGACTTGCTTCTATGGTAGGTAACGTACTGGTTGGTAACGAAGGTTTTGAA
CAGCTTTCTTTCTTGCTTTGATGCTTGATACACTAACTGTTCCTATCTGTGCCTATTGAATGATG
TTTTTGCCTCAGGTAGACTATTAAGAATTTGTTTGTTATCGTGCTGAAGATCCTGGGAGGGACTC
AGTCCAGAAACTTAATGTATTGGGTCTCATCAAAGCTATCTTCGCTCACCCCGGTCCTTCCTTCC
TCTTCCCATTCGGTACCTAACTATTTCCTTCCATATTGAATAGCTTTTATCGGCACTTCTTCTTT
TCCTCTGCTTTCTTCTTCCATTCCTTCCTTCCATATCACACGGAAAGCCCTGACTAGACCTATTA
CATGTCTATCTATCTCTGCTGCTATTCCAGGCATATACCCTGACA
Found at i:517872 original size:30 final size:30
Alignment explanation
Indices: 517836--517895 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
517826 AAACAGTGAA
*
517836 CTCTCTCCCCTCTTCTTCCAGCCTTCCTAC
1 CTCTCTCCCCACTTCTTCCAGCCTTCCTAC
*
517866 CTCTCTCCCCACTTCTTCTAGCCTTCCTAC
1 CTCTCTCCCCACTTCTTCCAGCCTTCCTAC
517896 AGATGGGAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.08, C:0.52, G:0.03, T:0.37
Consensus pattern (30 bp):
CTCTCTCCCCACTTCTTCCAGCCTTCCTAC
Left flanking sequence: Indices 517336 -- 517835
TCAACCACTCCCTTGAGATCCTTTCAAAGAATCACTTATCCCATTCCGGCAAATAATTCGATACA
GTTCGTTTATCTATTTGCAAATCTACTTACTAAAAAACAACAGCAGAAAAGGAATTTCTCTTCCT
CTGCGAAGAGCAAAGGGAAACATAAGTCCGAATTTACTTTTTTTTTCTTTTCTCTTTTCATGGTT
TTTACTACCTGCGTAACTTTCTTTTTTATTTCTTTTTTTTTCCCTGCTTCTTTAGAAATCTATAA
AGAGTTGGGCCAAACTTTCATAGCTTGGCTTTGCTGTCTTCTTTCTTCAACAAGGTCACTTTTTA
GTGAATTGCGAGGTCGCCGCTTAGCGCCCTTGGGAATGGACCCATCGGGAGGCTCTTCGGTCGGT
GAATTTGATCCAAACGGTCAGACCGTCGTTCAGATGGACGACGACTTGGGTTGGGATAATTTGGA
TCCGATACTTGAAATCCCTCCAGCGGAAGTCCGGAAAACAGTGAA
Right flanking sequence: Indices 517896 -- 518395
AGATGGGAACAGTAGTCAAATCCCAAAACACAATATAGCGGTAATAGGAGAAGATTATGGAGAAA
AGGCATTGGAACGAATAGATAAAAAATTCCAAGAAATATCCATCCGAAAGGCTCTGCCTGACTAT
ATGGCTCAATTTCATAACGCTTCGGTAGAGACTCTAGAGAGGGAACTGAAGCTCCGAGAAAAGAG
CATATATCAAAAGCATCTGTCTTATTATTGTTTTAAAAAATATGATTACAAAATGCCCATAATAG
ATGATGTACGTGGCCTTTTGAATAGAAAAGAAGAAGAACAAAAAGTACACGTATTGATTTCTCAG
ATTTTACAGTACCAAGGTCGGCAACCTACTCTTTCGGAGATTTGGGTGCTTGAAAAGCAACTTGA
GCACCCTCATTTCCGATATGATTTACTTAAGCACGTTTTCCCTGAATATGTCACGAAATAAAATA
ATATCTTCGCGGGCACAAGGGAGGGGCCGCCCCGGACTAGCTACT
Found at i:525938 original size:17 final size:17
Alignment explanation
Indices: 525906--525940 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
525896 TTTTCTTGAA
* *
525906 TTCTCTCTCTCGCTTCT
1 TTCTCTCTCCCCCTTCT
525923 TTCTCTCTCCCCCTTCT
1 TTCTCTCTCCCCCTTCT
525940 T
1 T
525941 CCTCCCTGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.00, C:0.46, G:0.03, T:0.51
Consensus pattern (17 bp):
TTCTCTCTCCCCCTTCT
Left flanking sequence: Indices 525406 -- 525905
AGTACCTCTCCCATCGCTACCATTGGTGGCACCCGAAGGAGAATTACGAGTTGAGCCAATTGCTG
TGCTGGATAGCAGGCTAGTCAAGCGAAATAACAAGGCTGTGGTTCAACTTTTGGTACAATGGTAT
AACATGCCTCCTACTGATTCGACTTGGGAAGATTATGATCGGATTCCAGAAGAATTCCCGAGCTC
TGCTTTCTTTCTTTAGGTCAAGGATCTGGGGAAGGAGGGGAGTAATGTCAGGAGATAAATGGCAT
AAAGGAGAACAATGTAAATAAGTAGTTTAATATAGTTGATAGGCCTTTTGTTGTTGTTGTTACTG
TAAGGGCTTTGGGCCAAATTAGTAATAGAATCAAAAAAAGAGGGTCCAGTCTTGTTATTACTGGA
AAGCTTCTCAGTAGTGGGATACAGTAGGTTACGAGAATTGGGAAAGAAATTCATGTATGCTACAC
AGTGTAAACAATCGATCTTGAATGCTATCAATTTATTTTCTTGAA
Right flanking sequence: Indices 525941 -- 526440
CCTCCCTGAAATAGAACACTCCAAAGCTCCTAGCAAGATCGCTGCACCTGTGTCCTTCCGTTATC
TATAAAACAAAAACTTCAAGCCGAAGGTGTGTTGACCATATTGCGGAGTGCAGACTATTGCTAAA
TCTTCACATAGAATTGCAAGAATTCATGTGTAAACCATAAAGGTTTCATAATTAACTACTCCACC
AACCACACCATATAAAAAAGGAATCCCCTTTTTCTAAGCTTCATGCCACGCAGATGAATTGAGTT
TCTTCCCTTCTCCCTAACTTTCTTCGGTTCCTGGTCGCTTATTACCTGTTTGTGAAAATGCCTCA
ATCAAAGGAGTTATTTATAGTTTAACGGTTGCTTTGCATTTGTATCTCATCTATTAATATATTTC
CCCCATTTACTTGATTTTTCCCCTTAGAAAACAAGAGAAATCTTTCTCTGATACGTGTTGCCCCG
TTAATACCTATTTAAGGGTTTGGTTTCATCTACCTATACTCGCAC
Found at i:535180 original size:15 final size:15
Alignment explanation
Indices: 535160--535189 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
535150 GGAAAGCGAA
535160 CAAAAGCATAGGTTC
1 CAAAAGCATAGGTTC
535175 CAAAAGCATAGGTTC
1 CAAAAGCATAGGTTC
535190 TATCTCAGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (15 bp):
CAAAAGCATAGGTTC
Left flanking sequence: Indices 534660 -- 535159
ACTGTGGAACTAATACACATACGCCATCCATGTGCCTTCTGTTTTCTTAACGTTGAGGGCTGGCT
GGGAAAGAAAGTTCGTACGTAGCTTGAGCTGGGTTGAATGATTCCTTCCTGGCTTTGAGTTAACC
TTGACTCATGGACAGAAACTCCACTTCAGTACCATTATATGATTTAATGCCTTTGTCATTTGCTT
CCAATCCATGTGTGGGGAACGAAGCCAATGATTCTAACCAACCCATGCCCAACCGCTGCGCGCCT
AACATCAAGAGTCAAATCCTATCGACCACAATGCCCAACCTTCGGCCTACTGCACAGCTCAGGAA
ATGCCATAAGTGGATCTTTTCCTGCTTACCAAGTATATTGTGGTGTGGACGACTGCTTCGTATGC
TTTAACTCAACTCAACTTAGTGGCAGTAATCCCCTCCCCTACGCTAGATGCTCGCTGCAAGAAGC
AAGCCGAAAGAAAGCAATAGAAATCCTTATGCCGCGGAAAGCGAA
Right flanking sequence: Indices 535190 -- 535689
TATCTCAGAGTCCGACCTGCGCCATCAATAAGGGGCCCAAGTCAAGTCGTAAGTAGCAGATCAGG
AAACAACCCTACGAGCTGCGGATACGAGAGAGCAAACCGCTTTCCCTTTGTTCATCAACAGATGC
GTAAAGTGTTCCAGGCGAAGTAAGACTTTGTAATCACTACGGTTTTAGCCCAGGTTACAGAGATC
GCGAACTCAGGAAGCTTTTAGACCACAGCGTAGGCTTGGGTGGGGCAATACAATGGAAATGGGCC
TTTCTTTTTCTTTTCGTAGGATAGAAAGTAGCCCTTAGACAACGAGCACAAGGAAGGCTGCCGGC
CCTAACGTTATCTTTATTTCTTGCATCCCTTCGGGTCTTTCCTTTTCATAGCAGTGCTTTCCAGA
GGCATGTGTTCGCTTTGAGGACTAGAGGTCGGATGCACGAGATCAAGTAGTAGCTTTCTAGCTTT
CCTCAAAAACTATCTTAAGTTATCTATTTGTTTAGGGCAGGATGA
Found at i:545459 original size:21 final size:21
Alignment explanation
Indices: 545435--545487 Score: 97
Period size: 21 Copynumber: 2.5 Consensus size: 21
545425 GCATCTCGCC
*
545435 TTTATATTACCCCGTTGACTT
1 TTTATATTACCCCGCTGACTT
545456 TTTATATTACCCCGCTGACTT
1 TTTATATTACCCCGCTGACTT
545477 TTTATATTACC
1 TTTATATTACC
545488 TGAACTAGCT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.21, C:0.25, G:0.08, T:0.47
Consensus pattern (21 bp):
TTTATATTACCCCGCTGACTT
Left flanking sequence: Indices 544935 -- 545434
CACTAGTTGATTTGCCTTCTCCTCCTTCACATACATCATACGACGATGAAAGGATGGACGTGGAT
ACCCTGCGTGAGGGAAACTGGGATAGGTGACACCGCTTACGCGTAATACCAGCAGAAGCTTTCAT
AAGTCCAGTTGTGCCAGAAGCAAGAGTGGCTTTTCTGTAGGTGTATGAGCAGTATGAGAAGAAGG
CAAGCTTTGCTTGGAAAGCAGGGAAGTTATCCCATCGGATGAAGCTAAAGCTACCTCTACTAGTA
CTTTTCCAGGCATAAAATCCACCCTATACGTGACTTATCAGCTTACCGGTGCTTGACTTCTCTAG
CCCTTTGAAGTACTCATCACCTGCCTTTAAGTCCTACCACTAGATGAGATTCTATCTCTTCTTTC
TTTTCCTATACTTTACTAGACTTATCTACTTTCCCTATTTGGAGCATGCCTCTATTCTGAGCTAT
TCACAAAGGGGGGAATATCTAAGTTATTCCTATACGCATCTCGCC
Right flanking sequence: Indices 545488 -- 545987
TGAACTAGCTCATGAATGTCTTGTTTTGCTTGCCTCAAGTCATCCTCCCCCTAGCTAGCTCCTTG
CCTGCCTATGAGCTGAAGTGCTGTCCTCAAGGCATATAGCCGTAACGGTTGTCTGATTGGTATTT
GTCCTTGCTTGCTTCTTTGCTTTTGCTTCCCACAACAGAAGGAGGCCTTACCTAAGAAAGAGAAA
AAGTCAGTCCTTACCTACTACATATATGACACCAGCACACATCTACCATAAAGGTGGGAATTCCC
TTAGACTCTATAAGATATTATGAGAAGCTTCTTTTAGGAGTAAATAGTGTCGTTTTTTCATTTAT
CTTCGCCCTTTGGGATATTTCTATATAATATATAAGGATTCTGAACCTGTATGATTCACCGCGAA
TCGAGATTGGAAAGGAAAGGTCATTCAATTAGAAAAAGAGGAGTAACCCTCGGGTCAAGCGCATC
TCCTAATTGGCAACTTTGAGGCTTTCAGCAAAACTGACAAGCTGC
Found at i:579389 original size:20 final size:20
Alignment explanation
Indices: 579364--579405 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
579354 TCAACCTCCC
*
579364 AGCCCCAAACCTCCCTAACT
1 AGCCCCAAACCCCCCTAACT
579384 AGCCCCAAACCCCCCTAACT
1 AGCCCCAAACCCCCCTAACT
579404 AG
1 AG
579406 TTAAGACTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.31, C:0.50, G:0.07, T:0.12
Consensus pattern (20 bp):
AGCCCCAAACCCCCCTAACT
Left flanking sequence: Indices 578864 -- 579363
GGAGGACTCAAGTAATGCAGTGGTAAACCTTGATGGATCTCACGTTCAAACCCACAACAGGCAAG
CCTCTCTCCTATTCAAGGTTCTCACCGACAGACCGATAATCACCAACCAACTTGCTGCTGCCATG
TTTCAAAGTTGGAAACCCTTCAACCCGCATCTACTCTGTTGGTGCTGGTTGCTACGTAGCAGAAA
TTGAAACCCATACTGATATAGACAGAGCACTTGAACTTGGTCCATGGCATTACAGAACTGATCTA
GTTCTGACCAAAAGACTGAAACGAGCACCTACTGTGAAGAATCAAAGGGAATCTCTAGCATGGAA
CTGTGGGTGCAATTTAACAACCGAGATACTGAACTATGATGGAGTGGTGAAGATTGCACAGACCA
TTGGCACACCTCTGCTCACACACAGCTCGGAAATGGAGTGAATTTTCACGTATGAAGGTCCAGAT
CAATGTTGAAAAACCGCTCAAAGATGTCATTCAAGTCAACCTCCC
Right flanking sequence: Indices 579406 -- 579905
TTAAGACTAGCAATAGGGCGTCCTTCTTGGCTGAGCACAGCGTCTATGCCCACATTGGAAGCATC
ACACTCAAGTTCGAAGACCTTGTCGAAACATGGAAGTGCGAGGACCGGAGCTTGAGTCATCTTCT
CTTTGATCAACTCGAAACTTCGTTGTGCCTCATCGGTCCACTTGTACTCTCCACCTTTCAAAAAC
TCAGTAATTGGGAAAAGAAGAGCCAATCCGGCTTCAGACATTCTTGAAATTGGATCTTTTGATGA
ATGAAGGGGCAGGTCAGTACTTAGTGGTCTAATTGCATTGCGAGATCAAATATGTGGTCAAAGTT
CTTTCCCAAACAACCCTTACACATAGTGTGATTCTATTGTATGATTTGCATCCTTACCTTTATCC
ATTGATATACAGGCAATAGTATAGTCATGATCCTCGATTCAACCAAGGATAAGCTTTCAATCAGC
TTCCGGTTCTCCTGACCAGTATTATTTGTAGATTTATCGAGTGCC
Found at i:580760 original size:14 final size:14
Alignment explanation
Indices: 580741--580767 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
580731 AGATACTAAT
580741 AAGAAGCTCTTTTG
1 AAGAAGCTCTTTTG
580755 AAGAAGCTCTTTT
1 AAGAAGCTCTTTT
580768 CTCAAGAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.37
Consensus pattern (14 bp):
AAGAAGCTCTTTTG
Left flanking sequence: Indices 580241 -- 580740
GCTGCGTAGAAGAAGAAAGATAGGAAAATCGGCCTTAGCCAATAAGGAGAAAAAGAGAGATGGAT
AAGCTAACGACTTACTTATTAGTAGAGCGATACCCACTTCTCATTCAGCCGCTTATTGGAATACC
AGTGTAAAGGTCCCTAAATAGAATTTCCTGTTAGGTTATTGAAATTCTTTTATTGAAATGAAAGA
AAGACCGGAATGAGAACTGGTAGGAAAGGAAAAGCACTAGTTCAAAGAGCAATCTACGAGCCAGA
TAAGGCAAAAGAGCTAAAGACCACTAGAGTCAATAATCTTTTTAGTAAGGTATTATTAGAGATAG
CTGCAAGCTCTGAAGCCTATAGCGAAGATCGAAATCAAAATGGAGCAAAACTCCCCTACATGCAC
CTCAGGTCTTAAAGTCAAGGGAGAACTGCGAAGGGCATAACCCAAAGTGGAACTAGAAGAAATAA
GCCAGCCCTGCTTGAGTGTCAGCCTAGATAGAAGGAGATACTAAT
Right flanking sequence: Indices 580768 -- 581267
CTCAAGAATAGCTCCTCGTTCACTAAGAGAAAGAGTGAAATCTATTCAATTTCTAAGTTCAATAC
GTTCCTTTTTATTGCTTTTCTCACAAGCTATTGCTGTTTTATAGAAAGTAGAGCCAAGACTTTGT
TTCATCACTTTTTTCGTAAGTAAGCAGTATGCAACTGTTTACTGCATCTTTCTGTTTCCCGGTTC
CTCTCGTTTCTGTGATTCCAGAATGCAGCTCCATGTCCTCCGCTCTTCCCGAAAGGGATAAGAGG
ACTCAGAGAGACAAGACACTCTACTTTCGGTAGGCTTTCTCAGACCTCATGAAAGTAAGTAAGCC
GAGGCGCGGAGCGATAGGGGACTCCTATTTCATAGAGCTATTGAGCAGATCGTGAAAAGTAATTG
AAATGAAAAGCGCCAGGTGCGAAGCAAAGCGGTCTTCTCCATCCAGATAAGGTACCGCGGCTTAT
ATATTCTATTTTACCCACATAGGGTTTTTTTGGAAAGGAAGTAGG
Found at i:585933 original size:18 final size:18
Alignment explanation
Indices: 585907--585944 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
585897 TGATCATCAA
*
585907 GCATCTTGTTCGGCTTCG
1 GCATCTTGTTCGACTTCG
*
585925 GCATTTTGTTCGACTTCG
1 GCATCTTGTTCGACTTCG
585943 GC
1 GC
585945 TTCAATATAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.08, C:0.26, G:0.26, T:0.39
Consensus pattern (18 bp):
GCATCTTGTTCGACTTCG
Left flanking sequence: Indices 585407 -- 585906
AACCTCTCCTTCCTCCTCTGATATGTGTATTCCTACCATCTCAAACTTTTCTTCTTCAATAGCTC
AGTAAGAGGTTTACTGATTGCACTGTACCCTTTTTATAAACCTTCTATAGTAACCCGTTAGCCCG
AGTTAGCCCCTCCCCTCAATTGCTTACTTAACGGTTGTTGGTTTAGGCCAATTTTCCATGCATTG
AATCTTCTCTGGGGCCTCTCCTTCACTATCAATGATGTGTCCCAAGTATTCAATACGGTTTACAC
CAAAGGAACACTTAGATCCTTTTGCAAACAAGGAGTCCAATGCGCTCAAGCTTTATATAGTCTTT
AATGAATGGACCTAGGATCTTATGTGGCAGAGTTCTCAATGGTGTCGTATGTGACACTTCTTTAA
GCTTTCTAGCCATGGATTTAAGGCAAATTGGGGGCCCAGAATGCATGGGCCCTATCATTAGCCCT
CGGGCTTCTGTAGCCAGAAATGGCTGCAGAAGTCTTGATCATCAA
Right flanking sequence: Indices 585945 -- 586444
TTCAATATACATGTCGGCCTCCTACTTGAATAGCCCTCGTGCTCAAAATACTTTCGACCGCCTCT
AGAAAGATCCTTCTAGCCGAGCATCTCATACCAACAGCCCTCGTATTCAAATGTTCTTCAAATCA
TCGGCTCTTTTATGCAGTACAATCTTACTATTCCTCATGTTCGGCCACCTACTAACTCTTCCTTG
TCTCCGGCTTCCTTCCATAACTTGTTTGTGGCAAGAGCTTTATTAGCAGCCTGTACATTGAATAG
ATTGAAGGCAATAATGAAATGCAAGACGCGTAGCGGTATGGACTTTGAAAGAAAGTAAGAAAGAG
CATTGCGGCGTATAAACTGAATTGTTGAAAGAAAGTCCTTGTTTCTGCTGGCGCCCCTTTCTTTT
GTGTTTATTTCTTCGGTACTTGATAAACTAAGTAAGAAGTATTTTTGAGGAGATTTCTTACCCAT
CATCTTATCTACTACTTGTGGACCAAAGGTAGCTATAAGATCATA
Found at i:600667 original size:14 final size:14
Alignment explanation
Indices: 600648--600677 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
600638 AACATGATCG
600648 ATTGTTCGGGAGAC
1 ATTGTTCGGGAGAC
600662 ATTGTTCGGGAGAC
1 ATTGTTCGGGAGAC
600676 AT
1 AT
600678 GGAATCAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.23, C:0.13, G:0.33, T:0.30
Consensus pattern (14 bp):
ATTGTTCGGGAGAC
Left flanking sequence: Indices 600148 -- 600647
GTTTTATGCGAATTTTTTGGATTTTTTGGATTTGGGCAAGCGAAGAGAAATTTTGTCTTTTTCTA
TTTGTAGCTACTCATTCATATTAGTTGATAAAAAGAGAAGAAGTCTAAAAGAACCAGAAGATACA
TTAGAAATAAAAGATCTAAACAACTCGCTTATGGAAAAAATCAAAGATGAATTGAGAGCTTCATT
ATCAAATAAAACACTGGCCGATGCGGTATGCGCTAAGCTTTCTCGATGACCTGGCAAAGCTGGAT
AAGAAGGAGGAGCTAGAAGAGAAGTCAGTGTGAGTAAGTCAGAGTAGGGATTCAGTTATTTCATT
TTCATAGATAGAGGGATTGGATGAAATCATTCATTTTTATATGAGATTTCATGCTTGAATGTGAT
GTCGCTGCGCGCCTTCCTTCATTTTGACCTCTCTTTTCTCTGGCTCCGCCCTTGCTTTCTGTGAA
GATAGATTACTCACCGGCTGGAATTGACCTTTCTTAACATGATCG
Right flanking sequence: Indices 600678 -- 601177
GGAATCAAGATAGAGGAACAAGTTTTCCGCCTTGACTTCGTTGGGGGCATCGAAGCCATAAAGAA
AGGTCAGACCGGGGAAGGAGCGAGCCGGCCTCACATAATTTGAATTGCTCTTACATTCCACGTTT
CTGAAATGGATCCTATCAAATATTTCACATTTTCTATGATCATCTTTATCTTAGGTATTCGGGGG
ATCCTCCTTAATAGGCGCAACATTCTTATAATGTTAATGTCAATTGAATTAATGTTATTAGCTGT
CAATTTGAACTTTTTGGTATTTTCCGTTTCTTTGGATGATATGATGGGTCAAGTATTTGCTTTAT
TAGTTCTAACAGTGGCAGCTGCGGAATCTGCTATTGGATTAGCCATTTTTGTTATTACTTTTAGA
GTACGAGGGACTATTGCTGTCGAATTTATAAATTGCATTCAAGGTTAAACATAACTAAAGGAGAT
TGACCAAATACAAAGTGCTTTTTTTACTTCTTCTTTCTCTTGTCC
Found at i:609256 original size:35 final size:35
Alignment explanation
Indices: 609210--609279 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
609200 CATAATTTAA
609210 TATGTCCAGCGGTACATTGAGCGTGGAGAGGCAAT
1 TATGTCCAGCGGTACATTGAGCGTGGAGAGGCAAT
*
609245 TATGTCCAGCGGTACATTGAGCGTGGGGAGGCAAT
1 TATGTCCAGCGGTACATTGAGCGTGGAGAGGCAAT
609280 GAAGGTAGGG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.24, C:0.17, G:0.36, T:0.23
Consensus pattern (35 bp):
TATGTCCAGCGGTACATTGAGCGTGGAGAGGCAAT
Left flanking sequence: Indices 608710 -- 609209
ACATATTCTATTATGTATGAATGAGTACATATATCATAATTTAGTACGGTTGGCGGGTTTATCCT
ATTATGACCTATCCTTTGCGACTTTTTTTTTAATGCCCACTATAGTACTGACGTGGACGGAGCCT
CCTTATGGGTAGCATGGTTACCAGAGAGGGTTTGGAACCATGTGGTGAGAGGTGTGTTGGTGTGT
GAATGACCTACTTTTGTAGACATGTTTGGGATGGGTGGCTGGCTTTCTCTTCACTTTGAATCCGC
TGGCCGGCCTACGTCCTATCTATTCCAGAACCTCAAAATCATCAATTAGTGTCTGAAGACGATGA
ATAGGGCTTTCACATTTTCTTGCTTACGTGAGGCAAGCTTTTGCTTTTGAACTCTAATTTTTCTT
TTAGTTTTTATGTGTGGGAGGGATTTTGAAGCATCAAGTCAAAAAGGAGAGTGGAACATGTGTTA
GTAGTGGGCATAGGAAAAACAAATGCAGGATATTCCATAATTTAA
Right flanking sequence: Indices 609280 -- 609779
GAAGGTAGGGTCTTTTCTACTCCTTATATCTTAATATATAGTCAGGTTGGTAGGAAATAAGAAAA
TACAACACATACATACATAATGCATGCTCTAAAATGAAGAAAAGAAAAGGACGCAAAACCATGTA
ACACACACCCCATGGAGGGGAGCCGCTCTCTCAACGTTAAGGAAGGTTATCCATTCCCGTATCCG
CATCTATACATATGAATTGGTTATAAAGGTATTCATGAAATTAAGTGATAAACCATATTAGAATA
TTAAAGCAATGACTGTAGAATTGGACTCTTTCCATATGATCTCTTTTCATTAAAGCAGTCAGAGT
CCTTGCTGATTACAGAGAATTTCTTCTCTTTTCACTCGTCGCCCGCATGCTAAGTTAGTACCAAA
AGGGCAAAGGTCGTATTCTTTAAAGAATTGCAAAAAAAAAATAGAATAGTTTGATAAATTAGATG
TAATGTATGCGGGTAAGGATAAAGCGGCAGGAAGGCGCGCGCTCA
Found at i:634859 original size:22 final size:22
Alignment explanation
Indices: 634806--634851 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
634796 ACCAAAATCA
634806 TCCAACAATGTTCTGATTTGAC
1 TCCAACAATGTTCTGATTTGAC
634828 TCCAACAATGTTCTGATTTGAC
1 TCCAACAATGTTCTGATTTGAC
634850 TC
1 TC
634852 TGACAATGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.37
Consensus pattern (22 bp):
TCCAACAATGTTCTGATTTGAC
Left flanking sequence: Indices 634306 -- 634805
TTTATTAGGAAGAAGTGGTTGCCCCGGTAGCAAGAATGGAGACAATTCGGCTGCTGATTTCGCTA
GCAGCTCAAAACAGGTGGAGTATTTTTAAGATGGATGTAAAGTCAGCATTTCTAAATGGAGTGCT
TGAAGAAGAGGTCTATATTGAACAACCCCCTGGTTATGTGAAAGTTGGCAAGGAGAACAAGGTGC
TGAATTTCAAGAAAAGAAGGTGGAAATAAATGAAAATTACTAAATTTGTTAGACTGAGCAGAGAA
TTCTTTGGTTTGACAGACATTAGGAAATCTTACGGAAATGATAAGAGATACTGACATCTTACAGA
CTGTCATTTTCTTACTTTTCTGCCATATTACTCCCTTTTTTATGATATTTTCATCCATAAGAAGC
TAGGACATTTATTAGGATTGTTATCATTACTACTGCGAACGATTTTTTTTTATCTTACTTGATTA
GTCTCCACTGAATCAACCAAGTCAGTAAGATTATGACCAAAATCA
Right flanking sequence: Indices 634852 -- 635351
TGACAATGGACAATTATACTACCACAATGGGACAATTACCCTCACACAATGGAGACGGAAATGTT
ACTACAACACTGTCACCATTTAGACAAAGGTTTTACCCCCTTTTAGTTACATTTTGAGAAGTTTA
GTAGCCATTTTCTCCCTCACATGTCCCAACTGTTATCCCTTTCCTGCATTTTAGCCCCACTAACC
CCAGACTCTTAAGAAGCAACCGTCCCCAGCTTAGGAAAAGCCGATTTTTATCTTACCGCATAGTC
ATTGTTTGGCTACTTTAGACCCTACTTCTTTACTATGTGTACCCACGTATCTATCAACGACTGGA
AGCCTTACTGGAGGCCTTCTACTAATACCCAATCGAGATATCCCAAGAAATGGAAGGAGTAGATC
CTATTTGATATATACTGAACAAGATAAGGAAGCAAGCTACGACAAACAAACGCTGCAAACCAATC
GCCTGCCACTGCAAGGTTTCACTGGATAGGAATATGAGGACCACT
Found at i:682002 original size:33 final size:35
Alignment explanation
Indices: 681960--682029 Score: 99
Period size: 37 Copynumber: 2.0 Consensus size: 35
681950 TCTTCTAGAG
*
681960 AGTTACC-TT-TTCTATATAGATAGAGTTAGACAT
1 AGTTACCTTTCTTCTAGATAGATAGAGTTAGACAT
681993 AGTTACCTTTTTCTTCTAGATAGATAGAGTTAGACAT
1 AGTTACC--TTTCTTCTAGATAGATAGAGTTAGACAT
682030 CATAGATATA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
33 7 0.22
36 2 0.06
37 23 0.72
ACGTcount: A:0.31, C:0.13, G:0.16, T:0.40
Consensus pattern (35 bp):
AGTTACCTTTCTTCTAGATAGATAGAGTTAGACAT
Left flanking sequence: Indices 681460 -- 681959
TCTGTATGCTAAACACTGGCATTGCTGAAAGTGAAGCATATTCGATGAAAGATTGCCATGTGCTA
CCCAATTAGTGATGTTTTCTACTTGGTAATGTTATTCTCCTGTCATCTATAACACTTGCGAGAAT
GAAAATAATGAGCTCAGTGGACTAAGAGAAAAGGTATCTTCCGTTTCAGCATTTGATTGATTTTC
TTTGGATGATGATTTCCCAATTTTCTACTAGCTATTGTGGTGTAAGTCCAAGGAGAATACAAGTG
GAAGCTGAAGAAATGTTTGAATTTAGTAATATCTCAAATTTCTGTGGTCAACCTAGAATAGACAT
CTTATAAAGAATGGTCTGGAAAGAGAGACTTTTCTGTCTGCAACCGTCTGTCACAAAGAAAAAAA
GAAAATACTTAGTTACTTAATTCTTTCTTTGAGTATGGAATTCCCATAATTGAGAAACATAAATG
ACATTCGGTGAAGATCAATCTAAGCCAAACCTTTTTCTTCTAGAG
Right flanking sequence: Indices 682030 -- 682529
CATAGATATACATAGAGTCTTAAACAACTTCTTTCTTAGAAACAGAAGACAGCAACCAAAGAATG
TTAAGAAGTCTCCTGCTCGGATGTCCCGTCGAGGAAGATGTACTAGGGTTTCGTTCAGATCATGA
GTTCGCAGAGATGAGAGAATTCTTCCAGTATCAAGGACTCATACTGGGCTGAGATCACAGTATAT
ACTCCGTGGCTAGTCTGCGCTCTTTGCACTTTTCAAACACAAAGGTCTATAATATACCTATTAAT
TCTCTAGAATCTGGTCATTCTCGATTTGACGGTAGCAAAAGCTTATCCAAGGAGGACTTTCTAGG
AAGCATGCTCCTTTTTGAAAGGAGGGACTCATAGGGTCAGCTACCTAGCCAACTTTTCTAATTAA
ATACCGTCACTTTATGGATAACTCTTAGTGAGGGCTATCACTTTCTAACTATTACTTTCTAATTC
AAAGGATGCATCATGGTAGTCATAATGCGGAAAGCGAACTAGGTT
Found at i:689805 original size:17 final size:17
Alignment explanation
Indices: 689783--689815 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
689773 TGTACTTAAT
689783 ATAGTTAGATAACAGAG
1 ATAGTTAGATAACAGAG
689800 ATAGTTAGATAACAGA
1 ATAGTTAGATAACAGA
689816 AAACATTGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.48, C:0.06, G:0.21, T:0.24
Consensus pattern (17 bp):
ATAGTTAGATAACAGAG
Left flanking sequence: Indices 689283 -- 689782
CAGAAGATAAGTGTAGCGGAGATGCGTATGCTGCGGTGGATGTGTGGTCGGATGTGGCGGATTGA
ATCCATGCTTTCTCATTCTCAGAGTACCAGTTCCTTTTTTTTAGGTTGGATTCCTATAATCCCAT
GCATAATACTCGATTTAAGGAGGGGTTTTCTTGAACGAAATTGAAAGAGGATTGGACCTTTCTGC
GTTACATCTTTTAATTGCTAACTCGAAGGACCCCACAAGCTAAAGTGACCCGGATTGAAACAGCT
CCAGCAAACTCTTGCACGAAAAATTCGAGTGTTTCTGCTGTACACAGGCTTTTCTCTAGCGGTTC
AAAGGTTTTAGGCTCTGGCCACTGGTACAATGAATGAACTCACATACGATTCTTTCCTCTTTGAA
GACAAGCCTTCGTACAATTCATTCAATCAACCGGCCTCCCCAGCCGAGCGCAACTATCCATGCAC
TTCCTTTTACCGACCGAAATAATTTTAGAGGTTTTTGTACTTAAT
Right flanking sequence: Indices 689816 -- 690315
AAACATTGAACTCCACTACATAAGCCAGATGCTTCTGGAAGAAGGCATGGATTATCAGATCAAAT
CATACTGGGCAGCAATCAGACAAGTCGAGAAGCCCGGCCGGACATAAATACCCGCTTGAATAGTC
CCTTCCCTGTGATAGCTGCAGTAGCAGCAAGAGCCATTCTTTTACTTTTAGCAGTGGCAGTACTA
AGATAAGAAAAGTGGTGGGGTAGTGGATAGTAACTGGAGCCCTTAAAACTCCTAAGACTGATCTG
TAAATGTCAAAACTTTGCTTGACGTAAGTAAATGCAGGAGGCCTGTAGTGGATTTGACGGTTTCA
AACATACCTTACCAGCAAGCATGGGAGCAAAGAAATTTATTCCAAAGATCAACAAGCTTATGATT
TAATTGAAAGTGAATAATATCGAAACTCGTCCTGAACCAGAAAGTAAACCAGTCAAAGCAGTAAA
ATCAGAGGGGCAAGAACAAGATAGTTGGGTAGGAAGAACCCTATT
Found at i:725901 original size:14 final size:14
Alignment explanation
Indices: 725882--725911 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
725872 GCAGGAAAGG
725882 CATTCGACTATTAT
1 CATTCGACTATTAT
725896 CATTCGACTATTAT
1 CATTCGACTATTAT
725910 CA
1 CA
725912 GTAAACACCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (14 bp):
CATTCGACTATTAT
Left flanking sequence: Indices 725382 -- 725881
ACATATGAGTGTGTTTTTTTCCTTGAAATATATCTCAAATAAAACTGCATGGTCTATTTATCCGT
TTCAATTTAGTTATTTGAAGCAAAATAGGTCAGGTGGGTCATGACTCACTGACACAGATCAGATC
CGCAGGTTATATTCTTCGTTTAACTGCGATTACTTTATTACTGTACCAGCCATCACCGAAATTGT
GCAGTACTTGTTAAACAGGTCAAAAAAGAAGAAAATGGCTTTTCTATCTAATTTGAAAACAGAAC
TCACTGATCTAGCTGGGTCCATATACACATTCAAGAGAGATCTAATGCTTGGGTACTTCTTCCAG
ATAGCTATTGCATGCATGTCTCGGCTGCACCTGAGGAATAGCTTTAAGGGCCTTTACCCTTTAAT
AAAAAGTTGAAACCATTTACCACAACTTCTAGTTTCTTTGCTTTTCATTTGCTTTGAATAGAACT
AGGAAATGAAAGAAAAACTAAAAGAAAAGGGCGCAGCAGGAAAGG
Right flanking sequence: Indices 725912 -- 726411
GTAAACACCAGACAATTCTCTAAAGGAATCTTGCATTTTTTAGAAAATGGCACTATTTCTTTTGA
ATTCTACCTACTATCGCTTTCTTTTGCTATTTCTGATAAAAAACATACTACTTTCCTTGAATCAA
AAGGGTTGGGCCAGGCGGCTTCTTCCTGCCTGCTTCCCTCTAAAAGACAATAACCCAGATCAATC
TGATATAACCTCCTTCCTGCACCACCTTGACATAAAAAGTAGATAAGGAGTCAGACGTGACTATC
GCAATGGTAGCGAGCCTCACTCACCAAATTGAAGCATTTACCAACCAACACCATACTTCAATGAC
AAGTTCAATTGGCATGGGACTTCGAGACTTTGGTGTGGTAAGCAATTTGGTGAAAACTTGGTGCT
ACTGTGCGCATTGAGAAGAGAGAGTCCAGATTCTATATGGAGAACTCAGTCAACGCATCAACTCC
AACTCCTACTTATACACCCAATGTGAAAGCATACACCACTATATA
Found at i:736742 original size:21 final size:21
Alignment explanation
Indices: 736713--736757 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
736703 CTTTGGCTCA
*
736713 TATCTTATCCTAGCTATTCTG
1 TATCATATCCTAGCTATTCTG
*
736734 TATCATATCCTCGCTATTCTG
1 TATCATATCCTAGCTATTCTG
736755 TAT
1 TAT
736758 TCGAATCAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.20, C:0.24, G:0.09, T:0.47
Consensus pattern (21 bp):
TATCATATCCTAGCTATTCTG
Left flanking sequence: Indices 736213 -- 736712
GCATTGACACATTCTATACACAATGGTGTAAGCTGGTTTGTTGTGCCAAGACCCAAGACCCTTAC
CTATTCCCAACCGAAAGTGTTATCTCCTAAAACAGCCTACTAAATAAGTATAACAAAAAGAATAC
CTACTACGTATGCAAGTCGGAGCACCAAAAGTACACTGTAGCTGTGCACAGGGAATATCCGGATT
ATTTTCTAGGTGGGTATGAGAAACTATGCTTGCTACAAAGGACACCGCTGGAAAGTTGAAACTAA
GAAAATAGCCAACAAATGCAAGCAACCCTAAACATAAACAAAGAGAGACCAGAAAAAAAGCGACA
ATTGACCAGGAGCCGGACCACCGACTTCTACAGTATCTGACACCGCCTATGGGACTAGCCCACAT
TCACTGTTCATAAGAGAAGGAAAGATGATGACGTTCATCCACCACTTTCCCTGTTCATAAGAGAA
GGAAAATGTGTGACGATGCTCTTCATCTTTCATTCCTTTGGCTCA
Right flanking sequence: Indices 736758 -- 737257
TCGAATCAGAAAGTCAAGGCAAGGTATGTTTACTTTGGTGTGAGAGAGTTAGATCCTTCTATGGA
ATCCCCCACCCACTCGCGAAAGGCATTATAACTCCTTTCATAGAGTTCAGCAGCCCTCAAAAGAG
TAAAGAGTATTGGTATATTGAGAGCTCGAAGAGATTTCATGGATATAGTTTTGATTGAGATTTTC
ATGGTAAGCTCGAAGTAGAGAATCGACATGACCCACGCTGCGCGCCTCTCCTCCTCATTCTTGAA
ATTGCTAGGGCAAATGCTTTCCATTGCAGATCGTAATGTGTCAATAGGAAAAGGTTTAGCATCAT
CATCATCAGTAAGACGAGACACTCCAGGGTAAGAATAGTCAATCTCATAGACATGATCTATATGG
AATACGGCAGTATCTTTTTTAGTATTCATGAGTGAACGATAGAGACTTTTCACTCTGAAATATGA
GGTTATCATAAATGATTCGGTTAACAATATATAGTGGTGGTGTAA
Found at i:739757 original size:25 final size:25
Alignment explanation
Indices: 739727--739777 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
739717 ATGTACCTAG
*
739727 TATCTTCATCATCTGACTGAGTTTC
1 TATCTTCATCATCTGACTGACTTTC
739752 TATCTTCATCATCTGACTGACTTTC
1 TATCTTCATCATCTGACTGACTTTC
739777 T
1 T
739778 TTACCCAATC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.20, C:0.25, G:0.10, T:0.45
Consensus pattern (25 bp):
TATCTTCATCATCTGACTGACTTTC
Left flanking sequence: Indices 739227 -- 739726
TGACCATGGACAATGAATGGGCATAGAGATTTTCTTCATTAGCTTACGTGATGAGGTGATACAAT
GGAATAGAGTTCATTAAGATACGTCAAAGATGATGGGCTTTCATGAAGTATATAATAACTATAGA
AATCTCCTATTTCATAATTTCCACATAGATCTCTGAGTCAGGCAGATAAGTACTGTATCCTAATT
GCGTATCCAAGAAAAAGGAAGAAAGCATAATCTTGGGCAGATGCGCTTTCGCACTACAAGGGTCA
AGAGTGTCAATCATATAAGCACATACTCTTCACAGGTACCCGTAAAGAATCCTCTTCTCAAGTCC
TGTAATTCAAGTGAATAGATTCTTCTTTTTACTTAGGCTCACTCTTCTTATCTTACTACACCAAG
CCCCACCACGACCTTTGACTTCTTGAGGCACGCCACTATGCACCAGAATACCTACGGTTAAGCAT
GGCTCAATCAGCAACATGTATCTACACCCATCTCAATGTACCTAG
Right flanking sequence: Indices 739778 -- 740277
TTACCCAATCAAGATTGTACTGGCCTTTACTCCTCCATTTCCTTCACTACGTTCATTTAGTCAAG
GGAAGATTTCTTTTTCAAGAGTATGCTATGGGTGGAATTGCGTATAGGTTGACGGAGAATACTGC
TGACCGACTTCACTGAGGCAAGGACTAGACTAGCTACCTTCTTCGAGTGGGTCTTGCTTTGTTTT
TACCAACTTTCATACTTGTTGCGTAGAGTTCTGGCTTTTGCTACACTTAGAGTGCAATAAGTCTT
TAGGCACTTTCATCAGATTCCAATAAGGTTCAAGTCATGTAAGGAAAAGTGATCTCTGAAACTCT
CCAGTAGTGTCTTTGTTATGTGCATAGTTTAATATAGGCGTGGAGAAATGGTGTTTCACTTTCAT
TTGTCTTTTATCAACATTACAGGGATTTGGTTAAGCATGGTTTAGTACTTCTATTTCCTCATTTT
GATAATGGTATTCAGGGTTACCAAACTTAATCATGCTATGGTGTG
Found at i:771167 original size:37 final size:37
Alignment explanation
Indices: 771137--771208 Score: 108
Period size: 37 Copynumber: 1.9 Consensus size: 37
771127 GTAGTGAAGG
*
771137 AGAACAGTGTCCTATGAGTTACAACCAGTAGTAGAAC
1 AGAACAGTGCCCTATGAGTTACAACCAGTAGTAGAAC
* * *
771174 AGGACAGTGCCCTATGAGTTTCAACCTGTAGTAGA
1 AGAACAGTGCCCTATGAGTTACAACCAGTAGTAGA
771209 TAGAATAGGA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 31 1.00
ACGTcount: A:0.33, C:0.19, G:0.24, T:0.24
Consensus pattern (37 bp):
AGAACAGTGCCCTATGAGTTACAACCAGTAGTAGAAC
Left flanking sequence: Indices 770637 -- 771136
TTCTCATCATAGGACATCTACAGCATCAGAACCAAGTCATACCTACTTGAAGGAGGGATTCTTTT
TACTGCACATAGGCGACGTAGCCTTAGATGCTAAGCATTTCTTCTCCTATATGTCTACAAAATAG
ACAACTTCTACTTGATCAGATAGAAAGCACTCGCTTTCACAACCTGCTTGCACCAGATCATCCTA
TCAACTAGACACAAGGAAGATTCTGACTAGGAAGTTTCATTCTACTTCTCACATGTGCACCGGAC
GATTGTCATTCCTCTCTATCAATCTAGTAGAAAACTGTACTTCTTGCAGGACATAAATAGCTGAA
TCAGTGAAATCAGTATTTCTAAGCCCTAGTTAAAACAGAATACAGAGAATAAGATGAACAGAATA
AGTCTTACAGTTCAGAGTAGTAGAGTAGGTAACACCAAAAAGGTGTAACGTAGAGTTTGAGTAGC
TAGCAAGGAGTTGAGTGAACAAAGCCTGTAGTAGAGTAGTGAAGG
Right flanking sequence: Indices 771209 -- 771708
TAGAATAGGACAGTGCCATAGTTGAGTGAGTTTCCTAATGGAGTGAGTGGGACTTTCGTTTGTTG
ATAAATAAGGATCGACTCAAGCGACTGGTGGACAGCCTGCGGCCTTGCTTTCAATCCAATAGTAC
GAAGTGAGTTCTGAGTGATAAGCATAGAGTTGACACCTTGCTTTGAACTACTTTCAATTTCAATT
AGTACTTGGGACAAAACTGACCGCAGTGAGCTGGGACACAAGGCACTCTTCTTCTTTGAGACTCG
AGAATCCGGGGCTAAGATAGAACGAATTCCTGCCCAGGGCTAAAGCTAGAAAAAGGGAGCCTATT
TCCCTATGCCTCCCACACACCCACTCTTCTTATTACCGGTCCTGTTGGCTGGTTCTGGGGTAGTT
GTCTCTGATTCTGCGGTTTTTTCTACTATGGGTGTTTCTGTTTCTCTAGCTGGTGTGGGGATGTG
GGAATGAATACTGGTCCAGCTGTTCCCTCTCAAGTGGTTGCTGGT
Found at i:778752 original size:14 final size:14
Alignment explanation
Indices: 778733--778761 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
778723 AGGTTAAGTG
778733 CATGAACGGGTAGC
1 CATGAACGGGTAGC
778747 CATGAACGGGTAGC
1 CATGAACGGGTAGC
778761 C
1 C
778762 GGTATAGCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.24, G:0.34, T:0.14
Consensus pattern (14 bp):
CATGAACGGGTAGC
Left flanking sequence: Indices 778233 -- 778732
CTTTCTAAAGCTTGCTTGGCTTTTTTGCTTTCAACACAGAAATACTGACTGGCACTTTTGGCTTG
TTTGCGGCAATATGGATGGTTTGCACCCTACTAGTTTGCAGTTCTTTCTTGCACCATCTTCTCTC
TGCTAGCTTACTTTGGATTTGTCTCAAATCTATAGCCAGTTGCTCAGACCATTCCCAACTTAGTT
CTATATAGAAGTTATTATTCCCACCACTACGAAAAAACGTTGCAGTTGAGATCAGTAAGTTAACT
CTTATTGTCTTTTCTATATCATGTCAACTAGTATTTTTACAAGAGGTATGCGTATTGAATCACAA
GTATAGGCTTTTTCTTGCTACTAGAAAGAAGGAAACCGGTGGTAAGCAGGTTAGACCTTTTTTGA
GTATGTATTTACAAGGGGACAGGTGAGTCACAACCTTGATTGAAAAGCAAAGAATAGACATGAAC
GATATGCACGCACGGATAATAGTGTAGAAGAAAATAGGTTAAGTG
Right flanking sequence: Indices 778762 -- 779261
GGTATAGCATGGTCTAGGGTTGTGAGGGAAGAAGAGATCGGTCATCAAAGAATTGCCGACTTTCA
TATTCTAATATATAGGCTCGATCAAGTAAGATTGGTCACCCTCCTATCCCTTTTTTTTAAGAAAA
CCTATCATTCATTCCCAACAATCGCTATTCCCACTATTCCCGCTTCACCTATTGGATTGAGATGC
ATATGCCTACTTCTATTCTTTCCCTACGCCTATGAACTCTTTTTTTTATCCCTCTCACCCTTCGA
ACCACCCTTGTTTGAGGACAGCAAGAGTTCCGAACTTCTGATCGCTATCCAAAGGAAGGTTTACT
ATCCTAAGACCCAGGGCAAGCAGAAAGAGTAAATGTTCCAACAGGTTCAACTAAGCTCGGGGCAC
CAATTCAGGCTGGGAGAAAAACAGTTCAAGCCGGGGAAAACCATGTAAAGTGCTGACCACCATAG
CAATTTTGATCGCGGACACATCAAACAGACAAATAACCCAAGTCA
Found at i:783532 original size:17 final size:17
Alignment explanation
Indices: 783506--783543 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
783496 TCAACCGACT
783506 CTCCTCCACCGATTCAC
1 CTCCTCCACCGATTCAC
* *
783523 CTCCTTCACCGGTTCAC
1 CTCCTCCACCGATTCAC
783540 CTCC
1 CTCC
783544 GGTCCTCCAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.13, C:0.53, G:0.08, T:0.26
Consensus pattern (17 bp):
CTCCTCCACCGATTCAC
Left flanking sequence: Indices 783006 -- 783505
CGAGTTGGCTAGCAGGCCCTGTGGTGGTTTAAAGATAACTATGTAGAGACTCTGACTTTTGGAAC
CCCTCTATTCCCTCATTTCATCTTCAACAACCACTGAGAACTCCTTATAATGAATATCCTTATAT
TGTCACGAAAGTTCTTATAAAAGTGGTATTCCACCCGACGAACCCACTTAAAAGAGAACTCCACC
CAGTTCTCATTTTTGTACCTGGTCAAAGTAGGTATTCATTTTCATTAATAAAAAAGGATAGGATT
TATAAGATAAGATTGATTCTTACTCATAGGTGGTTTGGTTTAAGACCTACCACTACAACAAAATT
GCTCATACCTGACCGTTGCTTGACGGTAGGACGCCGGTCAGGGCAAATATTCTCTGCTGACGGGT
GCACACGGTCACCACTTTGGTCGGGCCATATGCGATCTCACACAAATTGGGGAAATCGCCATTTT
CAGAACTCAACCCCTTCACTCCTCTCCTCCACCGATCAACCGACT
Right flanking sequence: Indices 783544 -- 784043
GGTCCTCCACCAGTAACCCCTCCTATTCTCCTCCTTCGATTCTTCACCTCTTATTCTCGTCTCCC
TTCTCCTAGCCTCTTGAATTCTCATTGCTCCAGCCTAAATCGTTGATCTCTCTTTCTCCCGCTCA
TCGATCTGCCTCGGCATGCACCTTCTTTCATCTTGTTTGTAGTTAAGATCAGCATGCACATTCTC
TCCACCTCTGATTATCCATCTCCAGTTCGCTCGTAGCTCAGATCCGCCGCTGACACCTCTCCATG
AGGTATTGTTCTATTTCGATTCAGTTCAGATTGAAATGCGTAATTATCTCTTCTTATTCGTATCT
CAGATAACTTCTGATGGGATTATAGTTGTAAATTTCAATTACTTGATCTGCTCTCAGGAGAGCAG
GTTAAATACTGAGTTATTAGAACTTTAGGATTGGTGTTGGTAAGGCTTTAATGCGATTATTGATA
CAAATTTCAATTGCTTGATCATTAAAATCAGGAACCAGTGGTGAT
Found at i:786166 original size:17 final size:17
Alignment explanation
Indices: 786144--786177 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
786134 ATTGACTTTC
*
786144 TAGCATTTTGTATTTGG
1 TAGCATTTTGAATTTGG
786161 TAGCATTTTGAATTTGG
1 TAGCATTTTGAATTTGG
786178 ATGTATAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.21, C:0.06, G:0.24, T:0.50
Consensus pattern (17 bp):
TAGCATTTTGAATTTGG
Left flanking sequence: Indices 785644 -- 786143
GACATTTTGCATAAACTGTCATTATTTGCTGTGTTTGGTACTAACACGAGCGGTATTTTTTGTTG
ACATATTTGCACATACGAATTGGAACTAAACGCTTTGTTGCTTATTATTGTTGTTGTATTTGGGC
ATTAGACCAATCACTCTACTGTCAAATATAGGCAATCAGTATGTGATTACAGCTGACTATATTCT
TGACTGTAAACTATTTTATTGCTAGTCCAAATGAAACTATATAACTTTGTTGTGTATGTAAAGTT
GATCCTATGTAGCCATATAGGCAATATAAAATAATAATAAAAAATGGTAAACAAAAGTGTAGTAG
TCTTGTTATCTCACTGGTACAATTTTTCCTTTGTGTGACAGGCTCATGGTAGATTTATTGCAGCA
GAACCTAGCATGTAATTTCACACTGATGGTGGTGACCACCTACATCCCTGATTAGTGATTGGATT
TATTTTGTATAATATTTTTCTATAGTGTCCTGAATATTGACTTTC
Right flanking sequence: Indices 786178 -- 786677
ATGTATAGAATTCTGTATATGAATTTATGCAAATATTGAGTTCTTAATCAATGTCTTTTGCGTAT
ATATTCTTTTAATTTTAGCCGCTGAAATTCATGTATAGGTTGTCTCTTTGTTAATTGCATTTGTG
GTGTATAAAATTTCCACATTAAATGGCAATAAAAAAAATAAAAAAATGCAGCTTCTTCATAAATC
ACAAATTGTAGGTGCTGACGGACGGTAAGAAAACTTTGGACCCCGTCAGCACTTTACAAGCTCCT
GACCGTCACGGTCACGTAAAAACAATTCTGGACGGATACCTTTCCCGACCGAGACATTCGTGACC
GCAACCGTCAGCAATGCACTAATGCTGACCGGTGCCATTCTTTTACTGACCGGATTTCCGGTCAG
CAATACTGTATTTTCTTGTAGTGTACATGAAAAAAGAGGAAGAATTAGGGGTAAAGTGCTCAATT
TCCATTGCTAAGGTGGTCTCTCAAAAGGAGTTTAGAAACTTTTGG
Found at i:787561 original size:22 final size:22
Alignment explanation
Indices: 787536--787578 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
787526 CTTAATGTAA
*
787536 TCTTA-AATAGTAATTAAATATC
1 TCTTATAA-AGTAATGAAATATC
787558 TCTTATAAAGTAATGAAATAT
1 TCTTATAAAGTAATGAAATAT
787579 TTCTGACTCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 17 0.89
23 2 0.11
ACGTcount: A:0.47, C:0.07, G:0.07, T:0.40
Consensus pattern (22 bp):
TCTTATAAAGTAATGAAATATC
Left flanking sequence: Indices 787036 -- 787535
TAGGGTAAATGCTTTCCATTGCAGAACGTAAAAAGTGAATAGGAAGAGGATGATCTTTAAGCCAA
GAGTCAGCATGAAAGCCATCATTTTCTTTACTCTTCATGAAATCACGAAACTCTATGACGTAGGA
GGTTATCAAAAAGGAGTTTGTTAACTGGGACTAACGATATCAAAAAATGCTTGAAATTCGGGTAT
CATGTGAGCATAGATAGCAGGAGTAAGAAAGTTATCATGAATAGAAGAAAGGTAAAGGTATGTTC
TTCTCCTTCAACATTGTCATAACCTCGCAAGTTAATCCAGCACATCTTTTTGGTGAATGCAATTG
GCAAAGGTGAAACGTTTACTCTTAGCCCTATCTTTCTGTAGGTACAGTCTCTTTCTGATTTCTGT
AGGTACAGATAAAGAAAGAGTATGCCTTTTGTTCAGATAAGGAAAGAGTATGCCTGTTTTTAAAG
ACCATATTGTAAACAGTTATCTTTTCGACTTTTTTCTTAATGTAA
Right flanking sequence: Indices 787579 -- 788078
TTCTGACTCAAGAGGATCCTTCCTGTAAACAGCAAACCATCCTACTTTGTTTACTAGATTCATGA
GATTTTGTACATCAGGGAATCTTCCAGAATTTGTAGAGCAAGTTTGCAGCTTTACCGCTTATTTT
ATCACCTTGACATAATCTCCGCGGCGGAAGCGTATGGTTTTCCCATAGACACGTGGCATATCTAT
CTTTTTAATGAGATAGACAAGTAGCATATATATCTGTTTAATGAGCTTACTAGCCTCTTTTTCAC
AGCTTGCGCAAGTTTATGATCATTATCTAATCATTATCTAATAAGGTAAGAAGATGAAGGTAAGA
TGATGATCTTTGAACTCTTCTTTCTAACTAAAAGAGAATTGTAAAAATCATGTAACTCCTCAGAT
GTATGGACTATATCTCTGAGAAGATTGGTAGCAACAGCGAACTTCTCATTGAAAGTGAAGTAGCT
CATAATTTGATAAGCACTGGCAGAAGCATCCATATTCATTGGAAT
Found at i:787790 original size:33 final size:33
Alignment explanation
Indices: 787753--787818 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
787743 TGGTTTTCCC
* * * *
787753 ATAGACACGTGGCATATCTATCTTTTTAATGAG
1 ATAGACAAGTAGCATATATATCTGTTTAATGAG
787786 ATAGACAAGTAGCATATATATCTGTTTAATGAG
1 ATAGACAAGTAGCATATATATCTGTTTAATGAG
787819 CTTACTAGCC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (33 bp):
ATAGACAAGTAGCATATATATCTGTTTAATGAG
Left flanking sequence: Indices 787253 -- 787752
GTAAGAAAGTTATCATGAATAGAAGAAAGGTAAAGGTATGTTCTTCTCCTTCAACATTGTCATAA
CCTCGCAAGTTAATCCAGCACATCTTTTTGGTGAATGCAATTGGCAAAGGTGAAACGTTTACTCT
TAGCCCTATCTTTCTGTAGGTACAGTCTCTTTCTGATTTCTGTAGGTACAGATAAAGAAAGAGTA
TGCCTTTTGTTCAGATAAGGAAAGAGTATGCCTGTTTTTAAAGACCATATTGTAAACAGTTATCT
TTTCGACTTTTTTCTTAATGTAATCTTAAATAGTAATTAAATATCTCTTATAAAGTAATGAAATA
TTTCTGACTCAAGAGGATCCTTCCTGTAAACAGCAAACCATCCTACTTTGTTTACTAGATTCATG
AGATTTTGTACATCAGGGAATCTTCCAGAATTTGTAGAGCAAGTTTGCAGCTTTACCGCTTATTT
TATCACCTTGACATAATCTCCGCGGCGGAAGCGTATGGTTTTCCC
Right flanking sequence: Indices 787819 -- 788318
CTTACTAGCCTCTTTTTCACAGCTTGCGCAAGTTTATGATCATTATCTAATCATTATCTAATAAG
GTAAGAAGATGAAGGTAAGATGATGATCTTTGAACTCTTCTTTCTAACTAAAAGAGAATTGTAAA
AATCATGTAACTCCTCAGATGTATGGACTATATCTCTGAGAAGATTGGTAGCAACAGCGAACTTC
TCATTGAAAGTGAAGTAGCTCATAATTTGATAAGCACTGGCAGAAGCATCCATATTCATTGGAAT
CCTCTTTATTTATTTATAAGGTATCCATACTCATGGGAATCTTCATTCTAAGGTAAATTAGCAGT
TCCTTCATGAAATCAGATAGAAACTGAAAAGGTTTCTGAGCTCTTTTAGCAGGGTCGAAGCAAAA
TCACTTTCACTATCCATACACGTTACTTGATTTCTTATCCAAAGCCTTTTTGAATGAATGAGCAG
CAGCTTCAAGCATTAATTTAGTTTTTAGGGAATCGCCTCTGAATC
Found at i:789373 original size:21 final size:21
Alignment explanation
Indices: 789349--789388 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
789339 CTGTGTATTT
789349 TGTAGATAGACCATCTTTTTA
1 TGTAGATAGACCATCTTTTTA
*
789370 TGTAGATAGACCTTCTTTT
1 TGTAGATAGACCATCTTTT
789389 CTTTAACAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.25, C:0.15, G:0.15, T:0.45
Consensus pattern (21 bp):
TGTAGATAGACCATCTTTTTA
Left flanking sequence: Indices 788849 -- 789348
ACTTAGCATTTACCGATACACTTTTCTTTATTCATAAAAATTATTTTTTGTTTATGCCATACGGA
ATGGTAAATAAAGTACCAGCTTGTTCTAAACCTGAAGGTGATGAAAACGAATCTATAGCATAGGA
GTAGGCAACACCTTAAATATTTCATCATTTGAAGAGCTTTCATCCATCATCAGAAGATGTCTCTT
CCTTACGCTTAGCTCTCATCTCACATTCACTTAAAAGCGACGAGAATTTGCCAACTGTTGAACAA
AGTTCTAAATTTGAGTTCTTGCATTTCATTAAAGAGTGAAGATAGAACCGTTATACAAACTAGTT
CCAAACTAGACTTATAAAATCTATTAACTATGGACTTCTCTCTCCATCTACGTTCTAATAGAAAT
TCTTTAGCAGACTGCTTACCACTCAAGAGAATTTGACTTAGAAGGTATGGACGTATAAAAAGAAT
CAACATCCGTTAGATAAAGCATTCTCCATTTCAAGCTGTGTATTT
Right flanking sequence: Indices 789389 -- 789888
CTTTAACAGCATTCTTTAACAGAATTAGAATCATCTTGAAAGATTGTTTTCCAGGAAAGACATGA
TCAGTATTATGTTTACGGAGCTTACTCTCTCTATTGGTAGTAGTGCACGAATGATTATTATCAGC
CATGCTAATCCGAATTCTATCCAGAAGGGAAGTAAGGAATCGATTCAGATCAGAATTCTAGTTAG
CAGCTGAAGAAAAGATCTAGGAAGCAAAACATAGAAAATATGGAACAAGTGGACTGGTACACAAA
GGAACAATGCTACTTTTTCAAATACTGGTTCTCATTTCTACTGACACGGAACTTACCAGAGCGAA
TGCCAGAGGAAGGATAAGGATCAGGAGCCTAGACCTTCAACATGTTAGCCCTATAACACATGGAT
GGAGCTTGGAGCACTTCTAATAAGTCAGTCTGATTTTAAATTGTAAATTTGCAACTTATTATGGA
CCCTGCATTCTAGAGTAAAAGCAGTTTTGAGGGACAAGTAAAATA
Found at i:834189 original size:17 final size:17
Alignment explanation
Indices: 834167--834208 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
834157 TAGAACTTAT
834167 CCAGATCAGCATTAGTG
1 CCAGATCAGCATTAGTG
834184 CCAGATCAGCATTAGTG
1 CCAGATCAGCATTAGTG
*
834201 CCACATCA
1 CCAGATCA
834209 ACACCCGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (17 bp):
CCAGATCAGCATTAGTG
Left flanking sequence: Indices 833667 -- 834166
CCATCTTTACTATGAGCAAGACAATGCAAAAGATCTAATGAAAATTAATTACTTGTGAAGAGAGA
CAAAATATCGCATGTAGTGATTCTACATATGATCCCCTTGCAAACACTCAAGCTCCTTGCGATTA
GTGATTCTACAATTCTGCATTCCCAAGATTCTGCTATACCAGGGCATGTAGTAAATGCAGGTTTC
TAGTGGTCGAGCTTGTGTAATTAAATATTAAAATAACTAACTTAAGAAAACAAATTCTGAGTAGA
TTCTTACATATTGTTAAAACGTCAAAAGCTAATTATTATTACCAAAACAACAAAATACTCACAAT
ATTTGAATTAAGGAAAAAGAAGCCGAACGATTCACAATATATCAGTATATCGCAACTAATTATAT
CACATAATCATACCAGATCAATAGCAATGCGTACTACTGACAAAGTGTCAGATCAGCAATAACGT
TAGCCCGCACAATGCCAATTTGCAACAGTGTAAGCTAGAACTTAT
Right flanking sequence: Indices 834209 -- 834708
ACACCCGAGCGTGACAAGCCTAGCGAACCAATGTTAAGAAAAAAGTGTCACTGACAAGATTCCAT
TAAGAAAACCGAAACAACGTTAGAAAAAATTATGTAACTTAAAATACTGTTTACTCATAGTCCCC
AGGAAAAAGAGATCGTCTTATTATCATTTTTAGCTGCATTTTATACATTCAAGTTCATTGGCATC
ATTTTCCAAATAAAGGATCTTGTATAGAACCATTACTTTGCAGGCTGAATCAAGCATTCTCATGT
TTCTGTCTCAAGGCATATAATTCAATTACCCAGTCCCAGATTTATCAGTCTTTGATATGAAGATG
TCCCAATAAATGAAATGAACAAAAAAAGATTTAATCATAGAAAAAGCTCGGCTTGGAACCCAGCT
TTCTTCACTGAAGAAGGTAATTTCAGAAAAAAGAAACCGATAAATCTGACTACATACTTCTTATG
AAAAGCTAGGCTCACCTTTTCATTCTTTGCTATAAATAAAAACTT
Found at i:847960 original size:34 final size:34
Alignment explanation
Indices: 847894--847961 Score: 100
Period size: 34 Copynumber: 2.0 Consensus size: 34
847884 CCGAATTAAC
* **
847894 TTATGGGTGTACTGCTAAACTTTCAAGCTCGGAG
1 TTATGGATGTACTGCTAAACTGGCAAGCTCGGAG
*
847928 TTATGGATGTACTGCTAAACTGGCAAGGTCGGAG
1 TTATGGATGTACTGCTAAACTGGCAAGCTCGGAG
847962 CTTTTTTTCA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.29
Consensus pattern (34 bp):
TTATGGATGTACTGCTAAACTGGCAAGCTCGGAG
Left flanking sequence: Indices 847394 -- 847893
GGGCTTAGCGTATGTCAGGTTGACTCCGCCAACGAACTGCCGCCAAAGAGGGGGACCTGTGATAA
GGGCGAAAAGCCACTATTGAAGTAGTGGATGATTGTTTCGTCGGAGATGACTTATATAACTTCCA
CTGACTTGTGATTCTCTTGGTGCGCTGCTGGAGTGGATGTCAGTCAAACCGGCACTAGTGGGGGA
CTCCTATGAATTGTTTGGTTTGTGATCTCTTTGTGAGCTTTGGATCAATGACCAGATTCCCGCTA
TTATAAGTTCTTCGAACTTGCAGCTGATCGATTGCAAGCTTGTCTAGCTTTTCCTCTTCCCCACC
TAAACGAATGAAATGGATGCTCTGACTCCCGCACTCGGGAAAAGGGGAGCTACTTAAACTGACCA
CTCTATGCTATCTTTTAGATTAGGCCCGGAAAACTCTTAGCTACTTTTAAGTTGGGATCCAGCAA
GAGAAGATGGAGCTACGCCCTGTACTACGTTACTTCCGAATTAAC
Right flanking sequence: Indices 847962 -- 848461
CTTTTTTTCAATAAGAGTTGAAAGCAAATGGGTAATATAAATGCTATTACTTAATTCACCATTTT
TGGATGCAACACATGAAACAAAGAAGTAGTAGTTATCAATGAATGCTTTGACATGAGAATCCCAT
ACCCTTTTGTTCCTTTGCATTGAAAGATCTTTGTTCGGCTAGTTAATTGAAAACTCGTCGCAGTA
CTTCTTTGCTTATCCAGTAGTGGGTTGAATTTATCTCATCCTTGTCTTTCAAGCAAATATCCAGT
ATCTTTGTACCATAACCACTATCAATCACAGTCATAAAATTTTGAATTTTTGAATACCCAATCAT
TAAAACAATGAGTTTTCTAGTTTAGAAAATAACGGAGATTAACACCTGCCCTGGTCCCTCAGTCA
AGTGAATTGCTTGAGAGATCATGAAATTCTAAACCTCTTCTTAAAAATTGCATAAAAGTAGTCTA
AAGTAGTGCTCATCATTCATGATGAATAGCCAGCCTTCCTTAGCT
Found at i:852068 original size:12 final size:12
Alignment explanation
Indices: 852051--852089 Score: 78
Period size: 12 Copynumber: 3.2 Consensus size: 12
852041 GACCTTCTCT
852051 ACTCATTATTTG
1 ACTCATTATTTG
852063 ACTCATTATTTG
1 ACTCATTATTTG
852075 ACTCATTATTTG
1 ACTCATTATTTG
852087 ACT
1 ACT
852090 TGTCTCCCCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.26, C:0.18, G:0.08, T:0.49
Consensus pattern (12 bp):
ACTCATTATTTG
Left flanking sequence: Indices 851551 -- 852050
CAGAATCGGTATAACGCATCCGCTACCTTATATGCCTCTCCTTGAGAAAGCGCAAAGTGAAGAGC
CTTAAGTATGTCTTCTCTGGCACTGTGTCGGGTTTTCCCATATACTAGCGGCATGTATATACTGT
TGATGAGTTTCCGAGTAAGTTGGTCCTTGACCACGGAAGCGAGGCCGGAATCTAGGTATTTGTCG
ATATTGAATTGAAAAGAGTCAAGAAGACCCGTATAAAGGTCACGGACAGTATCTCCTCCATCGCT
TATGAGATTAGTGCTTCGACGAGCCAAGTCCTCGTTGACAAGGAAATAAGACATAATATGATACG
CGCTGGAAGAGGCGTCCATCGATATTGGTATATGAAAGACCAGTCGCCGTTTACATATTACTTCT
GGTTTTTTCATGATGAACAGCGACACGAACTGAAAGGGGTTTTGAGCACCCGCTTGATCGCTTCA
ACATCAAATTATTCACATACGCAGGTTGAGGGGTTGACCTTCTCT
Right flanking sequence: Indices 852090 -- 852589
TGTCTCCCCTACTGTCCACGACCAAAGCTCCACTTTCCTATGCTATGTATGCCAACCTTGATCTA
ATAAGTGGTCTTAATTAGCAGGATAGGATAATATTAGACAAATGGAGGGTTTTGTTCAATACTTA
GGTAGGGCTGACTACGCCGCCTCAGCAGCTGGGACTGGAATTGCTTACAATGCATCTGGCCACTG
ACTGAATTCGAAGTAGGGCCAGTGTATAAAGACCGGCTTATCTCTCTTAAGACTTAGTCCACTTT
CTACTAGAATCAGATTTTCAAGTTTGCAAGCAGGTGTGCCAACCAAATACTTACGGCTTATGTGG
ATTTCTTTAGTCAGTCTATAACTCAGGCTTTTCTTTATGGGACTCCCACACAAGTAAGTAGCTAG
CTGGTATTGCCAAAGCCAAAAACACTGCTCCTTCCAAATAGACGAGACGAGCAAATGGTGGGACG
TAGAGAGACCCAGAATAAGATAGTTCCACTTTTGACATGTGAAAG
Found at i:874437 original size:24 final size:23
Alignment explanation
Indices: 874402--874447 Score: 74
Period size: 24 Copynumber: 2.0 Consensus size: 23
874392 ATAGGGGGGA
874402 ACCATCAACGTCACTTGTATCAG
1 ACCATCAACGTCACTTGTATCAG
*
874425 ACCACTCATCGTCACTTGTATCA
1 ACCA-TCAACGTCACTTGTATCA
874448 CCTATAAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 4 0.19
24 17 0.81
ACGTcount: A:0.28, C:0.33, G:0.11, T:0.28
Consensus pattern (23 bp):
ACCATCAACGTCACTTGTATCAG
Left flanking sequence: Indices 873902 -- 874401
TTCCGAATCAGGGGACCGAGGGCTAAGCCACTAAAGCCGGTCCCCGAACTTCTACATATCATATA
AACCCTTCCTCTCTTTCGTATACGAGCTGTGAGTAGCTGTCTCGCTCGCTCCGCCATCAACAGGA
AATCCATCCGCAGAAGTGAAGTCAACTGATTCTTTCATTCCAGTTGTTAGCCCGCCCTATGTTCC
CTATTCTTTTCGTATGCTTGCCCTAGGGAAGGAAATTGCGATGGAGAATCCTTTGTGCTTGGTCG
TCCTAACAAATAACCCCGGCGCCTTTCCTTTAAGTACTATCCTTGAACGAGTGGGATTGGTTTAT
AAATGTTGGTTCCTTCTTTTCCACCGTCCGAGGTGACTAAACCATTGCTTAATAATAAGTAAGAG
GCTGTGGAGATCCCCTTCCATCTTAGGTCAAAGAAAGAAGGAGTTGAAGAAAAGTAAAGTACAAA
CGAACCCTATATAATAAGGCACGAAGTTAGTACCTATAGGGGGGA
Right flanking sequence: Indices 874448 -- 874947
CCTATAAAAGACCACAGCGTTGCATCTATAAGCCGGCCCTCCGTCCAATCGACTTTGGTTACTGC
GGGCGTGGAACATCAAGAAAGGAAGAGGGTTTGTTTTCTCACGAAACCACTAAAGCCTACTGAAG
TTGAGAGCCAGTTCTGCAAGACAGGCATTGTATTTTTGCAATACTTTCACATGATTGTACAAGAG
AAAGAGACCAGGTTGACGACTGTCGGTCATCGGCGTTTGGTACAATTTTGGAGTGAACTTGTGCC
TGTTTTTTGGGTTTTCAACTGAGAAATTTCTGATCTATTGGTTGGAATAGTTCTCAATGAGAGGC
TTAAGGAGGTTTATTACAGTGGCACTCGAGCAATCCTTCAGGCTTGTTACATCACACCTAGTCTA
GAAGCTTAATTCTTTGTAGTGGCTTCGATTGCCGAGAAAGAGAGGGGAGTGCATAGAAGTAAACT
TAAACACAGAGAAGGTATTAATACTTTAGAAGACTTGTTTCAATA
Found at i:896118 original size:32 final size:34
Alignment explanation
Indices: 896077--896150 Score: 98
Period size: 35 Copynumber: 2.2 Consensus size: 34
896067 GCCGCCGGGC
* *
896077 AGGTATGATAAG-A-TAGGCAGGCTATCCAAGCG
1 AGGTATGATAAGCAGTAGGCAGGCCAGCCAAGCG
*
896109 AGGTATGATAGGCTAGTAGGCAGGCCAGCCAAGCG
1 AGGTATGATAAGC-AGTAGGCAGGCCAGCCAAGCG
896144 AGGTATG
1 AGGTATG
896151 GGTAGTAAGT
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
32 11 0.31
34 1 0.03
35 24 0.67
ACGTcount: A:0.31, C:0.16, G:0.35, T:0.18
Consensus pattern (34 bp):
AGGTATGATAAGCAGTAGGCAGGCCAGCCAAGCG
Left flanking sequence: Indices 895577 -- 896076
CAAGCGACTACCTAAAGAGAAGATGGGCTTTTTCTCATCTTTTCCAAAACTTTGTAAGACCAAAG
GGTGAGTAAGGAAATTCAAGGTTGTCGGGTGCGTATGCTACGTGTTAGTGCCTTACCATCTCCGA
ACCAAATAGATTAAGGGTAGGGTGGTTCGGTTATGAGGAGAAAAGGCTGTAGGTGCTGTGATCCT
GGCTCAAGAAAGGTGGTATTTGAGGGAGGCTCGGCATAGTGGTCCTCCGGCTGGATTGAATCCTA
TCTATCATACATATGTTTGTTATAAGTGTTGCCAAACTTCACTCTATCCGCCCTGTCCTTTCCAT
TGAAGTCAACAAAGAAAGGCCTATTCACCTATTTCAAGAATGCTTTCTAGTAAATAAAAGCCTTC
CTTTGCGGTAATTATATCTCTTTGCTTTCAGGGAAATCTCTCAACCAACTTACTTACTTATAGTT
ATTTTCCAACCAAAGTTAATTAAATATTAATGCCAGCCGCCGGGC
Right flanking sequence: Indices 896151 -- 896650
GGTAGTAAGTAGGCAGGCCCAGTTTGACTTCCTCTAGGCCAAGGCAGGATTTATTCGATTAAATA
ATATTATTCTGAGAGCGGAGCTTGCCTATATATTAAGTCTTACCTAACTCCAACCGGAAATACAC
TACTAAAGAAAGGCACAAAGTTCTATATAGTTGAGATGAACACGGCGTTCTAAGAAATACTCGCC
TCGGAGTGTAGAGGTAATTAACTTAGAATTATATAAACCGGGCGGCGGGGCACCCTGGGTAATTC
ATTCGTTCAATGAGAACGGAACAAACTTCAATGTACTGACTCTGATTCTATGTGAAAGGAGATTA
TCTTCCACCCATACAATAGTGTTATTCAAGTAATGAACTGTCCCCCACCCAACAAAATTATAGTA
ATTAAAAGTTCCTCTCGGGAAGCAAATCCGAGTAGGGCAAATCAAGTAATTCACTGGGGTAAGGG
CGAAGTAATTCACTGGGGTAGTCTTTTCTATGGGGGGTATACAAA
Found at i:896162 original size:35 final size:36
Alignment explanation
Indices: 896085--896169 Score: 104
Period size: 35 Copynumber: 2.4 Consensus size: 36
896075 GCAGGTATGA
* *
896085 TAAGATAGGCAGGCTATCCAAGCGAGGTATGATAGGC
1 TAAG-TAGGCAGGCCAGCCAAGCGAGGTATGATAGGC
*
896122 T-AGTAGGCAGGCCAGCCAAGCGAGGTATGGGTA-G-
1 TAAGTAGGCAGGCCAGCCAAGCGAGGTAT-GATAGGC
896156 TAAGTAGGCAGGCC
1 TAAGTAGGCAGGCC
896170 CAGTTTGACT
Statistics
Matches: 43, Mismatches: 3, Indels: 6
0.83 0.06 0.12
Matches are distributed among these distances:
34 1 0.02
35 36 0.84
36 5 0.12
37 1 0.02
ACGTcount: A:0.29, C:0.18, G:0.36, T:0.16
Consensus pattern (36 bp):
TAAGTAGGCAGGCCAGCCAAGCGAGGTATGATAGGC
Left flanking sequence: Indices 895585 -- 896084
TACCTAAAGAGAAGATGGGCTTTTTCTCATCTTTTCCAAAACTTTGTAAGACCAAAGGGTGAGTA
AGGAAATTCAAGGTTGTCGGGTGCGTATGCTACGTGTTAGTGCCTTACCATCTCCGAACCAAATA
GATTAAGGGTAGGGTGGTTCGGTTATGAGGAGAAAAGGCTGTAGGTGCTGTGATCCTGGCTCAAG
AAAGGTGGTATTTGAGGGAGGCTCGGCATAGTGGTCCTCCGGCTGGATTGAATCCTATCTATCAT
ACATATGTTTGTTATAAGTGTTGCCAAACTTCACTCTATCCGCCCTGTCCTTTCCATTGAAGTCA
ACAAAGAAAGGCCTATTCACCTATTTCAAGAATGCTTTCTAGTAAATAAAAGCCTTCCTTTGCGG
TAATTATATCTCTTTGCTTTCAGGGAAATCTCTCAACCAACTTACTTACTTATAGTTATTTTCCA
ACCAAAGTTAATTAAATATTAATGCCAGCCGCCGGGCAGGTATGA
Right flanking sequence: Indices 896170 -- 896669
CAGTTTGACTTCCTCTAGGCCAAGGCAGGATTTATTCGATTAAATAATATTATTCTGAGAGCGGA
GCTTGCCTATATATTAAGTCTTACCTAACTCCAACCGGAAATACACTACTAAAGAAAGGCACAAA
GTTCTATATAGTTGAGATGAACACGGCGTTCTAAGAAATACTCGCCTCGGAGTGTAGAGGTAATT
AACTTAGAATTATATAAACCGGGCGGCGGGGCACCCTGGGTAATTCATTCGTTCAATGAGAACGG
AACAAACTTCAATGTACTGACTCTGATTCTATGTGAAAGGAGATTATCTTCCACCCATACAATAG
TGTTATTCAAGTAATGAACTGTCCCCCACCCAACAAAATTATAGTAATTAAAAGTTCCTCTCGGG
AAGCAAATCCGAGTAGGGCAAATCAAGTAATTCACTGGGGTAAGGGCGAAGTAATTCACTGGGGT
AGTCTTTTCTATGGGGGGTATACAAAGATATTCAAATAGGTGATC
Found at i:911110 original size:15 final size:15
Alignment explanation
Indices: 911090--911118 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
911080 CCTGACAGGA
911090 TAATCTACGTAAGGG
1 TAATCTACGTAAGGG
911105 TAATCTACGTAAGG
1 TAATCTACGTAAGG
911119 ATCATCAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (15 bp):
TAATCTACGTAAGGG
Left flanking sequence: Indices 910590 -- 911089
AATGATGAAATTGAGAGATCTGAAAAGGCAAACTCCTTCCTTATAAAAGAGGCGGTTGGGGGGCG
AGTGCATCTTTTATTAGGGTATCCAGCATTTCTGGTTCTTGCTGGAGCTGTTCAAAAAGGTCTTC
GAGTATGGGAATATGAATTTCGTCATGAAATTCGATATCCCGCAGTACGAACTGGGTCGTACTAC
GAATATAGTAATTGGGGTCGCCATATAGTAACAAGCCTCTTTGCTCTGCGAGATGTAAAACATTA
TTCTCGAGCAATTCGTTACGGACTCGATTTTCTATTAATAAAGAAATTTCGTGATTTAATACTAG
GCGATGTGCTGCCTCCTCCAATCCATTGAGTTGAAGGATCGGCCCAGGCGCCGGTGGTTCTGCTT
CTACCGGGAATAAATCATCTCCTTGGATTTGAAAAACTTCAGGTGCTGGTGGTTCTGCTTCTTCC
TCGGCGGGAGGAGCTTGGTTTAGATCAGGGAGGAACCTGACAGGA
Right flanking sequence: Indices 911119 -- 911618
ATCATCAAAGGTTTTATTTATAAGAAATTGAATTAAGCAGCAGACAAACCTTACTAATCTAAAAT
GAAAAACCAAGAGGAAGATGAGGTTGATGGGTAGTGAGAAGACAAGCTTGTAGCTCAGTCGTTTG
AACCATGAGTCCGACTTGGAAGAGGAAGAGAAGTGTCTATAGGCCAACCTTTTCTGCTGTTGTTT
TTTAGTAAGTAGATTTGCAAATAGATAAACGAACTGTATCGAATTATTTGCCGGAATGGGATAAG
TGATTCTTTGAAAGGATCTCAAGGGAGTGGTTGAATCAACTAAGGAAACAATAGGTATTTGGGAT
CTATCAGCTTCCACTATGACCGAAGACTTCCTATCTGCATCAAGAATAAGCACACAATCAGGTTT
TTGGTGAAAGCCTAACGTGATTTTATTTGTTCTCGAACGGATGTTTTTCTTACTTGGAGAATTTA
AAAAAGCTCCGATCTTCCATTGAGAATCCTGGATCAAGTTCGCCA
Found at i:934228 original size:14 final size:14
Alignment explanation
Indices: 934204--934237 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
934194 AAACGAGATT
934204 CTTCT-TAAGAAGA
1 CTTCTGTAAGAAGA
934217 CTTCTGTAAGAAGA
1 CTTCTGTAAGAAGA
*
934231 CTGCTGT
1 CTTCTGT
934238 CCGAACAAGC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 5 0.26
14 14 0.74
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.32
Consensus pattern (14 bp):
CTTCTGTAAGAAGA
Left flanking sequence: Indices 933704 -- 934203
CTACGAATCCTTAGTTGTTAAGAATCTCAAAGGAAATATTACATGACCCTGGATTCATATATCCA
CCCACTAATTAACCTAAATCAAGGTACACCCCGCTTTTGACCTACAACAGCTTCACCTTCTTGTC
TACCCCAACCCACAGGAACACATACCATAGGTAATTGACTCGCGTGTGTCATGGAGTCAATATCA
AATTTTCCCTCAAGAAAGATTGACCCTTGAGCACAAACACCTTACCAGCTTTATTTACAGTTTTT
CTGATCTACCAATAACACCTATCATAACCATAAACTCCACTAAATAAGAAGCTTAGTTAATCCCT
CTCTTACCACTAAGCAACACGTGTGGAATCTCATCCTCAACATTCACCCAATCCTGATTATCCAG
TGTGTTAGCAATTTCATTCTCTACCAAAAGCTCTTCACTAGGTAGTTCCTTATCGAAACGAAGAG
CATCCCTACGTGGAAGAACTACTTCGCTCATGAGAAAACGAGATT
Right flanking sequence: Indices 934238 -- 934737
CCGAACAAGCGAAGAATCACTCATATCTGGGAATAGTATAGATATAGCACGAAGGCATAACAATT
CTAAGTCATATCTTTCCAAACCAAGGAATTTTCAAAAATTATTCCTCTGTCAGCTTAGTAAAGCT
TTCTTTTATTAAGCTTAAGCAGCTGATTCTAGAATAGCCCATACTTCTCTCGGTTATTGTTGAAA
TGCCTAGAGATAATAGCTTATTACTTGATTGACGTAATTCTAGCTAGTTTCTTTAAATAATACTA
GAATTCATTCATTTACTTGAAGTTTGAAGGATATTCTCCACATAAAATAGCTTTTGTTATAGATT
GAATTGGTGTTTACTCGGAATTAGTATTTCCTATTTCCTACGTGTATCTTTTCTACTAAATAGCG
GCACTTTCTTACTCTGTGTCACTACTCCTGAATCACATTAAGTATATAGGAAACGTAAAGGGAGA
TGGGAGCATCTCACCATCCGACTTCTTCCTCTCACTCGGCCATCT
Found at i:936158 original size:22 final size:22
Alignment explanation
Indices: 936128--936209 Score: 94
Period size: 22 Copynumber: 3.7 Consensus size: 22
936118 CTTGGCTAAC
*
936128 TCAACTACTCTATGAGGAGAAAG
1 TCAA-TACTATATGAGGAGAAAG
936151 TCAATACTATATGAGGAGAAAG
1 TCAATACTATATGAGGAGAAAG
* * * *
936173 TCAACAATACTAT-ATGAGAAAT
1 TCAATACTA-TATGAGGAGAAAG
936195 TCAATACTATATGAG
1 TCAATACTATATGAG
936210 AAAGAAAGGC
Statistics
Matches: 49, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
21 3 0.06
22 39 0.80
23 7 0.14
ACGTcount: A:0.44, C:0.13, G:0.17, T:0.26
Consensus pattern (22 bp):
TCAATACTATATGAGGAGAAAG
Left flanking sequence: Indices 935628 -- 936127
ACTACTAAAGGCAGGTATGAATTTCATCATCATCAAGAAGGTCTTACTCTCGCCAATCTCATCCT
TTTGCTATAATACTAGCCTGCTATACAGTTCCAGACCGAGCTAGGTTCTACTTACTGGCTGTTCC
AAGCGAGATAGTTCAACCAGCCCGTGCTTCAGATGAAAGTGTTTACCGGGCCAGCCTATCTATAT
GTTACGAGCGAGAAAGCAGGTCCAGAAGACTTTTCAAAAGAAGTGGTTTATTATTTCTGATCAAA
TGCAACGATCGACGACAAAGAAGAGCATTATTCCTGATCAAATGCAAGTAGAAGAGTGATCTCTT
TCTCCATAGGAATTCCCGCCGTAGCAAGGTAATATACTGCTGGACAAACTGCGCCTACAGCTGAA
CTCAATACCGAGGAAGCACCTAACTAAGTAAGCAACTGGGCAATAAGTTTCTGCGAACTCTCCCT
ACTACCCTCACAAAAAGTGAAAGAAAAGAATGACACTTGGCTAAC
Right flanking sequence: Indices 936210 -- 936709
AAAGAAAGGCTAAACTCCACTTCTTCTCTTACGACGGAACGTGCCAACCAAAGAGAACAGTCTCT
TTATGTCAGTCATGGAAGTCAGCTCATATTTTCATATATGCTTTTCCTTTCTTTCGTAATAGCTT
CATTTCATTCTTCACACTTAATGTTTTGCAAAAAGAAAGAGAAACCATGAGGCGTAAAAGAAGAG
CGCATAGCTCACATCCAAAACAAGTGAAAGAGGAAGGTGGATCTATTTCATAAATAGAATAACTG
AATTGATTGCCTAAGTTTTGCTCCTATCGTCTCGGGAGTCTAGGATTACTTTTCCATCTTTCTTC
ATTCCAGTTTTGAAGCAGGAGCAAGATCTAGAGCACCTACCGTCCAAAGTGGGTGGTCAATTTAT
CGCTCTTGATGCCAACTTCGAGTAAAGCATCAGGTCAGGTGTGGGATGTAAAATACTTCTATTTT
TCAGGCATTTCTTTTATTGCATAAGTGGAGTGGCGCTAGTGATCA
Found at i:949625 original size:19 final size:18
Alignment explanation
Indices: 949587--949625 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
949577 TTTCTCCTTC
*
949587 TACTTATAAGAATTGGAG
1 TACTTATAAGAATTGAAG
*
949605 TACTATATAAGAGTTGAAG
1 TACT-TATAAGAATTGAAG
949624 TA
1 TA
949626 GTTTCGATAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.41, C:0.05, G:0.21, T:0.33
Consensus pattern (18 bp):
TACTTATAAGAATTGAAG
Left flanking sequence: Indices 949087 -- 949586
AAGTGCATACCTAGCTGGACCTTATTCGAAAAAGAGTTGTCCTATCAAGAGTATTAGCAAGTAGT
AAGGTAAGCCAGTATTCAGTAGTTTGCTTTCCCGTTACCAGCTAGAATCAAAATACTCAAATACA
AGTAGGCAGATTGAAAGTAATAAGTGAAGAATTGCAATGCCAAATAAGAGTTTTAGTATTGCTTG
CTAGTTTCAGTAGTATACAGCTCGGTAGTTTCTACAGAAAAAGTGGTAAAAGGCAGAGGAAGCTA
TTAGTTGTAAAGTGCATTTATCGCTTATACAGTTTGAGTAGCTCAGCTATAAGATTAATAGATTG
ATACCAGGGTTCAAGTAAGCTAGCACGGAGTATTCGCATATAGCCGCAAGTAAGTTATAAGCATG
AAAGTAATAAGCAAGAAGAATGTGCCGTAGTAAGCTTATCTGCCAACTCTCTTGCCCAAGACAGA
GGCCGTAAGCTAAGCTGTCGTTACCAACTAGAAGATTTCTCCTTC
Right flanking sequence: Indices 949626 -- 950125
GTTTCGATAGCATTCCCAAGCCAAGCTGTCTATTAGCTAGAAGAATAAAAGATTGTTTTTTAGTA
TGGAGCTTTCGTATCAATGGTTTTAGTAGGGAAAGCACGATATCCGTTTTCCAGTCTAGTAATAA
GGTAGTAGTTTAAGGAGTATTAACTCGATAGTGGAGTTCTATCCGTCGATTAGCAGTTTTACTAA
GCAGTAGCAGAAAGGTATTTTTCTCAGATGAGAATAAGGGACTTGTTGTAGCTCGAATGGTGTTT
GACAAAAAGGTTGATGTTGATATTGGAAGTTCTGAGTTCATATTTCTTGAAATTCTAAAGGTAGT
TTTAATACATTTTGTTCCTTATATTGATGGATTGGCTAAAATGACAGTTGTTCCAGCTGTGATCT
ACTATTGGTTATGTGTTTGAATATACATTGGGTAATGCAATTTGGATTACTGATCAGAAGTCTGG
TTCAGAGTTGTTACCTATAGATAGTTTGCAGGCTCTTATGTATCA
Found at i:963023 original size:24 final size:24
Alignment explanation
Indices: 962996--963045 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
962986 TGGATTCTTT
962996 TACCTACTATTTATGTCTCTCGCA
1 TACCTACTATTTATGTCTCTCGCA
963020 TACCTACTATTTATGTCTCTCGCA
1 TACCTACTATTTATGTCTCTCGCA
963044 TA
1 TA
963046 AAAATGAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.22, C:0.28, G:0.08, T:0.42
Consensus pattern (24 bp):
TACCTACTATTTATGTCTCTCGCA
Left flanking sequence: Indices 962496 -- 962995
TGGTCTAAGAATCTGTACATCCCGGCCGGGAAAAAGTTGACATTAGGGAACCCTTCCTTTGGAAT
ATTGAATATAGTAAATGTATTTTTTTTTCTAGTCTGTACGGGTGTCCCAAAGTAGCGCCTAAATA
AGTTGTAGTTGGGTAAAAGTATGCTTCATTGAAAGTGAAAGTTTTGAACTATTGTGTGTTTTTTT
TATTTATTCTTGTTTGAGTTTTGTTCGCATTTCATACTTTCATACATATCTAAAGTAGTTTGATT
TCGTGCATCCAACCTTGCGCCAATTTCTTCGCTTCGCCCCTTATTTTTCTAGTGCTTGCTTGGCA
TTCCTCCCTCTGTTTCTCTTATATTTTGAGATCTTACAAAAAATTCTCAAGACAGCTAAACCAAA
CCTCAATTTCACATGGACGTCATAGAGTGAAGTGCTACCTTTCTTTTTTCATATGAAAGTGGGGA
TCTTGGTGATATATATTACTTCAACCAATATATGGTGGATTCTTT
Right flanking sequence: Indices 963046 -- 963545
AAAATGAAAAAAGCCTCCCACACAGAAAGAAAGAGCGCTCCGCCCAGGATGCTCTTTAAAGAAAA
CAATCGGACCCACACTTACCTCACTGCAGTGGTCTTTGCGGGTGGATTTTGGTTCAACTGGACAT
TCTGACCGTTGTTCAACTTCTCTTCGTGGAGGCTAAGTACTTGTGAAATTTCTCTTCGTCTAGGG
AGGCGTAGTGGCAAAGAGATGAAGAAGGAAGAAGGACTGGCGGGCAGACTAAGAATGTATTACAG
GATATTTTATGTTGTTTAGTTAAGTAATATGTTCTTGCTCGTATACTATGCTCACTATGTATGCA
AGGGCGAAGCTTGAAACTTATGAAGTTAACATTAAAGAGGATATCTTTTTTAATTTTACTCCAAT
GATCTCACTATATACGTACTCTATTCCTGTCCGTTGATTTTTCGAATCGGATGGCTGTAAATAAA
AGAAAAATTCTCTTGCAGCCGGTCACCACAATCCTACAGCCGGTC
Found at i:983868 original size:13 final size:15
Alignment explanation
Indices: 983850--983881 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
983840 TTACTCAATA
983850 TTCTGTCAT-TT-AT
1 TTCTGTCATCTTAAT
983863 TTCTGTCATCTTAAT
1 TTCTGTCATCTTAAT
983878 TTCT
1 TTCT
983882 TGTAGTCCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 9 0.53
14 2 0.12
15 6 0.35
ACGTcount: A:0.16, C:0.19, G:0.06, T:0.59
Consensus pattern (15 bp):
TTCTGTCATCTTAAT
Left flanking sequence: Indices 983350 -- 983849
TGCTCATTCCATGTCAATGAGCAGAAAAATCTATCTAATAAGGCAAAGGAATCAGAAGAGACAGA
TCTAGACCAAGTGAATTTCCTATCACTAATTGGAATTCCCAATAATTCTAATTCACCTATTTTTT
TATAAAATCTAGAACTAACAATAAAATCAAAAGATTTCCCTTTTTTTTCTGATCTTTTTCTAAGC
ATGTTAAAGTCTCTCTCCACAGATCAACCAGGCAGTATGTTTTAGATTATAAATCTTATCAAGTT
CTAGCAAAAAATTTGATCTTTGATGTGCTAACACAGGTCCATAAACTACTGTGAATAACCAATGG
AAATTATCATTTTTATTTTCAATTAGAATAGATATAGAGAAATCCATTACCCATGTATCTATAAC
TGTGAACATTGATGTATTAACCCCCACTAGTATACCACCAGAGTTTCCCACAACTCCCACAGCTG
GCTTAACAAACCATTTATCAATTCTAGTACTCAAATTACTCAATA
Right flanking sequence: Indices 983882 -- 984381
TGTAGTCCCACTAAATCACTTTTCTAAAATTCTAACTTGTCTTTAAGTAAATTCCTAGTTATTCC
CCCCTCTACAATTCCAGTTTAGGATATTAGCCATAAAAAACTATTTTAATCCCGGTGCTTCCAGC
ACCTCTACACTTATGTCTACTAGTTTCTTTCTATTACCATTGTTCTCTCTTTCCTTATCTGCTTT
ATCTATAATCTTGTGCACTAATTTAACATATCTATCTTTAAGTAATACTCTAAATTTGTTAATTA
CAGATAACTTTATTTCATTAGTTAGAGAAAATCCAATCTTTTCAAACATCATTATCACATCAGAA
TCAGTATACTGTGCAAAAGGAAAACTATCTATTAGACTTTGTTGAATGGTACCTTCAGTCCTATA
GCCAGAATTCTCTTTGAGACCTTCCTTCACCACCACCTTCTCTTTTTGAGGTTCTTGTTGTTTTT
GCTTCACTGGTTCATGAGGCACCATGTGTGAAGTTGGTAGAGATG
Found at i:985545 original size:16 final size:17
Alignment explanation
Indices: 985516--985551 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
985506 AATTTGATAC
985516 AATATATAAAATTATAT
1 AATATATAAAATTATAT
*
985533 AATA-ATAATATTATAT
1 AATATATAAAATTATAT
985549 AAT
1 AAT
985552 GTAGGAGAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
AATATATAAAATTATAT
Left flanking sequence: Indices 985016 -- 985515
TTTATTGAAGGGAGATCTGCTAAGTAGATGAAGGGGGGAAATCGTTGTTGCCTGGGCCGTCGGAG
AAGCTAGGAGATCGTGTTATTATATATAGATATCTCCGCCGAGTGAGTTTATCTCTTTTCTTTCA
ACCTACAGACAAAGTAATATGTCCCTCCAAACAGACTCTCGGGCGAGTGCGGCGCAGATCCACCA
ATAGAAAAGGAAGGTTGATGCGAGCCTTGTTGTACGAGGCGCGCAGCGATGGAGCTCGCAGAATA
TACTTAATCTCTTGCGTACCACTTTCGAAACCTCTGAACGATTCCAAGGCACTCTTCAAGCAAGC
TCGCAAAGAAAATATGCACTAAAAAAAGAGAGAGAAGTTTTTTCTTTATTAAAAAAAAATAAAAC
TGGATGGAAAGGTATTATTTATTGGGAACCTTTGGTGGGTTTTACTTTTACTTTAGTAATATGAA
AACTCGCTATTCACTCAGTTATTTATCAATATACAAATTTGATAC
Right flanking sequence: Indices 985552 -- 986051
GTAGGAGAGATGGCCGAGTGGTTGAAGGCGTAGCATTGGAACTGCTATGTAGGCTTTTGTTTACC
GAGGGTTCGAATCCCTCTCTTTCCGTTTCTTTGAATTCGAACATGGGTCACAATGTATCAAATAA
AATAACAATTGATAGCACAGCACCAAAAACACTTTTTTATTTTCGGTAAAAAAAAAACCTCTTTT
TTGGAGAGAATTATCAAACTCTGAGAAGAATCCTAACAATTCAAGTTCCTTTCTTTGGAAAACTT
CCTTTACTTACTCCCCCATATTCCACCGGGGACCCACTCAAAAGTAGAAAGGATGGCGCCTTTTT
TTTCCTCTGTTAAGAACAGATGGTGGAGTACAGCACTAGAAGATGACTGACGATCAGGAAACATA
AGTTCACCCCCAAGGCGAAATTGGATCAGGTTGTTCAATACCGGTTTGCCTCTCTCTCCTTAATG
AACAAGAGAATTCGATCGAGAGCCTATTGCTCTTCTAGCTCTGGG
Found at i:993018 original size:22 final size:22
Alignment explanation
Indices: 992990--993032 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
992980 ATTAAAACTA
992990 TGCTTGTACTGACAGGAGTTTC
1 TGCTTGTACTGACAGGAGTTTC
*
993012 TGCTTGTACTGACAGGGGTTT
1 TGCTTGTACTGACAGGAGTTT
993033 ACTTACCTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.16, C:0.16, G:0.30, T:0.37
Consensus pattern (22 bp):
TGCTTGTACTGACAGGAGTTTC
Left flanking sequence: Indices 992490 -- 992989
TTTCTATAGCTTGAAGCTGGGTAGAGAAGAATTATTAAAAAAAGGGTCGATAACGAGGTCGTGTA
CTCGTTCCACAATTTCAAAGTCGTATGAACAACGATGCTTTTTGCCATTCGAATCAAACTACTCG
TATGACAAAAGGGAAAGCAAATGCGTTGACATCCAAAAGCAGGATGTTCTGGTCTGACCCCTCTA
TCTACGCCTATACTTGGCCCCCTATTTATCTAAGCTTCTCTTGGCTAGTCGTCCTCTTTTCCTCA
CTCACAACTCTCTATACGAGCAGGCTATAATCGAATAGATAGAAGCCGTAGTTCAAGAGTGCGGA
ACCCATTCAAAGAATTTCAAACATGTGACCAACATCTAAAAAGATCGAAAGCACTTCGCTTCGCC
CCTACCTTCTCCTTGTCCAACTCATGAAACACTTTGGTCCATCCAATTCTTCTTTCCTGGAATTA
ATAGATCGATTCTTGAAACATCTTGCACCGAAACAATTAAAACTA
Right flanking sequence: Indices 993033 -- 993532
ACTTACCTCAGGAAAGTAGAGTTTCCCCGTTTTTAATGAACTTCTTCCCACAAGTCTGAGGCTCC
GTCTTTATGGACCAAGAGGGGTGTGTGTGTGGATTGGTATATTCGACTCGACTATCTACGCCATC
CCTACGACTAAGTGGCAGGAGCTACTAAGGTCTAAAAAGGTTCGAGCACAGATGAGAGCCGCGGA
CACTTGGACTCGTTCATCCTGGTTCTTAACGCCCGGGTGTACTTTAGGTATGTGCTGCCATATCC
AAATCTCACGATAGGGGTAAGGCCGCAGGGTACTGTGTTTTTTCAAAAGGTTAGCGTCCTTTGTT
CGCGGAAGGCGCGTAGCGTTCTTGGGTTCGTAACATTAGTAGTTACTCACTGGGAAGGAAACCAA
GCCAGGCATGGATATACAGAGTTGGCCAATAGAGAGTGCCCCAATAGAGATATTAATCCCACAAG
GGACACACAGCCCGGTAAGTGGAAGATATATGATTGGGAATATGA
Done.