123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_058697
Parameters: 2 7 7 80 10 50 500
Length:  1002696

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19882--19931	24	2.1	24	88	0	73	68	20	10	2	1.29
19887--19931	16	2.8	16	90	6	65	68	20	11	0	1.19
24454--24491	19	2.0	19	94	0	67	21	21	7	50	1.74
25576--25615	21	1.9	21	89	0	62	32	7	17	42	1.77
32150--32196	23	2.0	23	95	0	85	72	4	14	8	1.24
60713--60762	22	2.3	22	89	0	73	28	36	20	16	1.93
61981--62014	14	2.4	14	100	0	68	64	8	20	5	1.43
105313--105340	14	2.0	14	100	0	56	42	21	21	14	1.88
110602--110630	14	2.1	14	100	0	58	20	6	27	44	1.77
120707--120757	19	2.7	19	81	0	66	33	17	21	27	1.96
127279--127328	21	2.4	21	100	0	100	8	24	34	34	1.84
185779--185806	13	2.2	13	100	0	56	53	0	0	46	1.00
195237--195290	28	1.9	28	88	0	81	33	20	14	31	1.93
199266--199303	19	2.0	20	94	5	69	63	7	13	15	1.51
211026--211073	21	2.2	22	85	3	62	35	20	18	25	1.95
215744--215771	13	2.2	13	100	0	56	39	25	7	28	1.82
217932--217991	30	2.0	30	93	0	102	8	51	3	36	1.49
222713--222759	15	3.1	15	100	0	94	38	19	8	34	1.82
223514--223583	35	2.0	35	88	5	106	47	21	12	18	1.82
233705--233740	13	2.9	12	92	8	63	41	2	0	55	1.14
254637--254707	25	2.9	25	97	2	135	43	25	8	22	1.81
271396--271431	18	2.0	18	100	0	72	33	50	5	11	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
282877--282907	16	1.9	16	93	0	53	19	16	25	38	1.92
288246--288276	15	2.1	15	93	0	53	35	12	9	41	1.76
301891--301942	24	2.2	24	96	0	95	32	32	7	26	1.85
318736--318792	30	1.9	30	92	0	96	36	21	22	19	1.95
327516--327564	22	2.2	22	85	0	71	44	12	20	22	1.84
342642--342682	17	2.4	17	83	0	55	21	36	2	39	1.67
342851--342892	22	1.9	22	95	0	75	26	40	7	26	1.81
354924--354962	12	3.2	12	100	0	78	48	7	17	25	1.74
366306--366354	24	2.0	24	100	0	98	44	18	12	24	1.84
396491--396526	17	2.1	17	89	0	54	30	22	11	36	1.89
406934--406960	13	2.1	13	100	0	54	22	22	14	40	1.90
416464--416526	24	2.9	21	80	17	74	26	23	9	39	1.86
416470--416543	24	3.5	21	79	16	66	25	22	12	39	1.89
420832--420874	22	1.9	23	85	4	61	27	20	30	20	1.98
431805--431841	18	2.1	18	94	0	65	32	5	18	43	1.73
453619--453672	25	2.2	24	87	12	76	24	9	27	38	1.86
453625--453672	25	1.9	25	91	8	80	27	10	27	35	1.89
454633--454686	18	3.0	18	94	0	90	42	9	20	27	1.82
454624--454679	18	2.8	20	81	15	71	44	10	19	25	1.83
459991--460017	13	2.1	13	100	0	54	18	7	44	29	1.77
474506--474566	32	1.9	32	90	3	97	24	19	11	44	1.84
491008--491068	25	2.4	25	100	0	122	45	22	16	14	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
499584--499609	13	2.0	13	100	0	52	15	23	0	61	1.33
515648--515675	13	2.2	13	100	0	56	39	25	7	28	1.82
517836--517895	30	2.0	30	93	0	102	8	51	3	36	1.49
525906--525940	17	2.1	17	88	0	52	0	45	2	51	1.16
535160--535189	15	2.0	15	100	0	60	40	20	20	20	1.92
545435--545487	21	2.5	21	96	0	97	20	24	7	47	1.76
579364--579405	20	2.1	20	95	0	75	30	50	7	11	1.66
580741--580767	14	1.9	14	100	0	54	29	14	18	37	1.91
585907--585944	18	2.1	18	90	0	58	7	26	26	39	1.83
600648--600677	14	2.1	14	100	0	60	23	13	33	30	1.93
609210--609279	35	2.0	35	97	0	131	24	17	35	22	1.95
634806--634851	22	2.1	22	100	0	92	26	23	13	36	1.91
681960--682029	37	2.0	35	86	10	99	31	12	15	40	1.85
689783--689815	17	1.9	17	100	0	66	48	6	21	24	1.72
725882--725911	14	2.1	14	100	0	60	30	23	6	40	1.80
736713--736757	21	2.1	21	91	0	72	20	24	8	46	1.78
739727--739777	25	2.0	25	96	0	93	19	25	9	45	1.81
771137--771208	37	1.9	37	88	0	108	33	19	23	23	1.97
778733--778761	14	2.1	14	100	0	58	27	24	34	13	1.93
783506--783543	17	2.2	17	90	0	58	13	52	7	26	1.67
786144--786177	17	2.0	17	94	0	59	20	5	23	50	1.70
787536--787578	22	2.0	22	86	9	61	46	6	6	39	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
787753--787818	33	2.0	33	87	0	96	34	12	18	34	1.88
789349--789388	21	1.9	21	94	0	71	25	15	15	45	1.84
834167--834208	17	2.5	17	96	0	75	30	28	19	21	1.97
847894--847961	34	2.0	34	88	0	100	25	16	29	29	1.96
852051--852089	12	3.2	12	100	0	78	25	17	7	48	1.74
874402--874447	24	2.0	23	91	4	74	28	32	10	28	1.91
896077--896150	35	2.2	34	85	7	98	31	16	35	17	1.92
896085--896169	35	2.4	36	82	11	104	29	17	36	16	1.92
911090--911118	15	1.9	15	100	0	58	34	13	24	27	1.93
934204--934237	14	2.5	14	90	4	52	29	17	20	32	1.96
936128--936209	22	3.7	22	79	8	94	43	13	17	25	1.85
949587--949625	19	2.1	18	85	4	51	41	5	20	33	1.74
962996--963045	24	2.1	24	100	0	100	22	28	8	42	1.81
983850--983881	13	2.3	15	89	10	50	15	18	6	59	1.57
985516--985551	16	2.2	17	90	5	56	58	0	0	41	0.98
992990--993032	22	2.0	22	95	0	77	16	16	30	37	1.91

Tables:   1

The End!