123.fas.2.7.7.80.10.50.500.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_014050
Parameters: 2 7 7 80 10 50 500
Length:  982833

Tables:   1   2   3   

This is table  3  of  3  ( 287 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
835925--836008	39	2.2	39	100	0	168	20	22	11	45	1.83
841973--842046	39	2.0	37	85	12	100	17	27	14	40	1.89
842866--842988	64	1.9	63	95	1	219	30	21	39	8	1.84
844159--844217	19	3.0	20	92	5	93	33	10	23	32	1.88
844195--844245	26	2.0	26	100	0	102	39	11	21	27	1.88
844200--844256	26	2.2	26	87	6	80	42	10	22	24	1.85
844325--844383	29	2.0	29	93	0	100	37	11	45	5	1.63
856646--856705	19	3.2	19	75	0	75	45	20	10	25	1.81
857412--857442	13	2.4	13	94	0	53	48	3	48	0	1.17
858236--858291	12	4.3	12	75	16	58	23	0	33	42	1.54
858255--858319	6	10.8	6	79	17	73	30	1	33	33	1.67
858243--858310	28	2.3	30	92	7	113	27	0	33	38	1.57
858255--858319	19	3.6	18	78	17	73	30	1	33	33	1.67
858255--858319	25	2.7	24	77	17	73	30	1	33	33	1.67
858809--859023	51	4.2	51	83	10	251	21	22	22	33	1.97
859083--859236	64	2.3	65	92	4	247	47	20	17	14	1.82
859200--859272	34	2.1	34	92	0	119	49	20	17	12	1.79
859122--859280	34	4.6	34	71	12	117	47	20	18	13	1.82
859268--859356	27	3.2	26	74	13	88	49	14	25	10	1.75
859286--859343	30	1.9	30	86	6	82	50	12	29	8	1.69
859646--859702	23	2.5	23	88	0	78	40	15	19	24	1.90
871743--871828	37	2.5	32	83	16	127	4	46	12	36	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
871752--871853	37	2.8	37	95	4	183	5	43	13	37	1.69
872051--872181	69	1.9	69	98	0	253	25	20	16	37	1.93
872163--872356	31	6.2	32	80	11	181	23	19	20	37	1.95
888427--888518	35	2.6	35	89	1	148	42	18	38	1	1.58
889714--889774	10	5.9	10	92	1	77	57	11	27	3	1.49
891430--891547	38	3.1	38	76	4	130	23	17	20	38	1.93
891594--891831	94	2.5	94	89	3	347	36	13	23	27	1.92
891880--892032	70	2.2	70	80	4	166	28	20	16	33	1.95
893259--893390	70	1.9	70	85	3	185	28	18	15	37	1.92
893651--893712	31	2.0	31	93	0	106	25	17	33	22	1.96
905607--905638	5	6.4	5	100	0	64	62	0	18	18	1.33
910582--910633	19	2.8	19	77	14	63	42	13	7	36	1.73
911281--911340	32	1.9	31	86	3	84	60	0	33	6	1.23
928126--928152	13	2.1	13	100	0	54	33	22	14	29	1.94
932701--932946	29	8.5	29	99	0	474	9	39	19	31	1.84
937992--938016	12	2.1	12	100	0	50	16	32	8	44	1.76
938939--939106	71	2.3	72	71	2	185	38	17	13	30	1.88
940042--940110	31	2.2	31	79	5	77	24	21	15	37	1.93
970965--971021	30	1.9	30	100	0	114	35	12	35	17	1.87
971065--971119	28	2.0	28	100	0	110	34	14	43	7	1.73
971758--971975	31	7.0	31	75	11	162	41	17	17	23	1.90
971758--971912	62	2.5	61	83	9	181	41	17	16	24	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
972024--972206	70	2.6	70	84	0	258	24	20	15	39	1.91
972536--972615	32	2.6	29	84	11	88	33	17	16	32	1.92
972602--972654	17	3.1	17	94	0	88	24	24	7	43	1.80

Tables:   1   2   3

The End!