123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_014050
Parameters: 2 7 7 80 10 50 500
Length:  982833

Tables:   1   2   3   

This is table  1  of  3  ( 287 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4046--4101	28	2.0	28	85	0	76	7	35	17	39	1.78
5269--5308	21	1.9	21	84	0	53	37	10	32	20	1.85
13085--13126	17	2.6	16	92	3	66	7	23	7	61	1.47
13096--13134	17	2.3	17	86	0	51	7	28	10	53	1.62
24145--24178	16	2.1	16	100	0	68	41	17	11	29	1.85
26137--26258	34	3.6	34	96	1	217	29	13	45	11	1.79
28250--28282	15	2.2	15	94	0	57	30	24	15	30	1.95
35462--35577	34	3.4	34	83	4	153	31	14	41	12	1.83
37014--37251	31	7.7	30	77	13	145	39	17	19	23	1.92
37013--37251	62	3.9	62	77	12	217	38	17	20	23	1.92
37013--37266	93	2.7	91	84	11	286	38	16	21	24	1.92
37256--37457	71	2.9	70	71	6	192	25	18	17	39	1.92
55328--55391	31	2.1	31	90	0	101	48	9	23	18	1.77
61461--61489	13	2.2	13	100	0	58	24	34	0	41	1.55
62452--62502	13	3.7	14	76	12	52	58	0	41	0	0.98
62454--62502	15	3.5	15	76	21	61	59	0	40	0	0.98
62773--62931	70	2.3	71	83	1	185	29	18	17	34	1.94
64158--64202	22	2.0	22	100	0	90	31	13	28	26	1.94
72731--72800	34	2.1	34	94	0	122	10	34	8	47	1.68
76768--76883	31	3.7	31	85	4	171	39	18	13	28	1.89
90303--90367	32	2.0	32	100	0	130	3	27	13	55	1.53
90972--91164	70	2.8	70	87	1	271	37	20	16	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91286--91435	31	4.8	31	72	11	119	24	22	16	36	1.94
97781--97883	38	2.9	35	73	9	100	32	22	17	28	1.96
117175--117383	99	2.1	99	90	0	328	33	11	27	26	1.91
117189--117418	99	2.3	99	86	0	289	35	11	27	24	1.91
117479--117568	38	2.4	38	96	0	162	11	30	8	50	1.68
117917--117992	35	2.2	35	95	0	134	34	19	22	23	1.97
126269--126334	29	2.3	29	100	0	132	19	31	19	28	1.97
131475--131743	69	3.9	69	80	1	324	24	18	17	39	1.92
131475--131743	138	1.9	138	87	1	387	24	18	17	39	1.92
131720--131937	31	7.0	32	76	9	168	23	17	17	41	1.90
132079--132164	31	2.7	32	70	7	84	25	26	11	36	1.90
137374--137447	31	2.4	31	79	0	85	16	28	9	45	1.78
149261--149329	22	3.3	21	75	18	56	66	1	30	1	1.09
150176--150233	30	1.9	30	92	0	98	17	36	12	34	1.87
163577--163754	30	5.6	30	67	16	108	28	17	42	11	1.84
163598--163756	66	2.4	66	100	0	318	27	17	42	12	1.86
164125--164277	71	2.2	71	87	2	227	27	9	23	39	1.86
165019--165064	19	2.4	19	96	0	83	0	41	17	41	1.49
179516--179587	34	2.1	34	89	0	108	5	45	13	34	1.67
190560--190600	19	2.3	19	87	8	59	12	48	7	31	1.68
190971--191041	36	2.0	35	91	2	115	38	8	32	21	1.83
193209--193236	14	2.0	14	100	0	56	21	21	35	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
194193--194231	19	2.1	19	100	0	78	35	20	25	17	1.95
194811--194860	27	2.0	24	84	11	64	32	28	10	30	1.89
195425--195465	20	2.0	21	85	4	57	17	9	24	48	1.76
199730--199773	16	2.8	15	79	6	52	59	0	31	9	1.29
201309--201512	71	2.9	71	85	2	248	27	15	19	37	1.92
209311--209346	19	1.9	19	94	5	65	8	27	8	55	1.58
210756--210809	28	2.0	26	89	7	81	50	3	16	29	1.63
216744--216830	29	3.0	29	94	1	149	29	13	47	9	1.74
216763--216845	29	2.9	28	85	5	69	31	15	45	7	1.73
216748--216954	66	3.4	57	73	18	143	32	16	42	7	1.77
221925--222025	32	3.2	32	79	13	118	27	13	29	28	1.95
225398--225439	21	2.0	21	100	0	84	14	23	14	47	1.80
232509--232626	35	3.3	35	76	2	146	12	44	12	30	1.80
232491--232644	35	4.3	36	71	3	132	15	42	11	31	1.82
232491--232644	71	2.2	71	100	0	308	15	42	11	31	1.82
268114--268274	29	5.6	29	100	0	322	12	39	12	36	1.81
270217--270243	14	1.9	14	100	0	54	37	25	7	29	1.83
272462--272492	16	1.9	16	93	0	53	51	6	35	6	1.53
277975--278122	70	2.1	70	81	5	174	24	18	18	38	1.93
278473--278621	70	2.1	70	94	0	262	24	16	18	40	1.91
281935--282026	28	3.3	28	96	0	166	35	15	42	6	1.73
289848--289892	18	2.5	18	85	0	63	6	24	35	33	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
311453--311603	70	2.3	67	90	6	236	9	39	19	31	1.85
317934--317995	31	2.0	31	87	0	88	41	16	19	22	1.89
325925--325985	29	2.0	31	87	9	90	26	14	39	19	1.90
345310--345377	31	2.2	32	81	10	86	23	26	10	39	1.87
347588--347691	36	2.9	36	95	0	181	29	37	8	24	1.85
347923--347956	17	2.0	17	94	0	59	35	26	2	35	1.72
349039--349076	17	2.2	18	95	4	69	52	23	23	0	1.47
349041--349084	21	2.1	21	83	8	54	52	25	22	0	1.48
350882--350967	37	2.4	35	84	7	102	23	15	19	41	1.89
350882--350979	35	2.7	37	85	6	121	22	17	18	41	1.90
351639--351676	18	2.1	18	85	9	51	68	21	10	0	1.19
352820--352849	15	2.0	15	93	0	51	43	23	20	13	1.86
367810--367844	17	2.1	17	100	0	70	42	17	28	11	1.83
374191--374273	29	2.8	29	85	3	112	24	21	7	46	1.76
375855--375896	20	2.1	20	100	0	84	23	40	0	35	1.55
376158--376224	24	2.9	23	75	6	73	40	5	26	26	1.79
376442--376504	20	3.2	20	91	4	103	38	28	6	26	1.81
376455--376515	18	3.3	18	88	4	68	37	27	8	26	1.85
376645--376733	23	3.8	22	82	8	88	31	24	13	30	1.94
376646--376712	23	3.0	23	91	6	102	29	25	10	34	1.89
377732--377770	20	2.1	19	90	9	62	12	33	17	35	1.88
380008--380060	18	2.9	18	91	0	88	41	5	32	20	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
380943--381200	47	5.3	49	81	3	245	37	20	19	22	1.94
381265--381327	21	3.0	21	86	9	101	44	12	34	7	1.72
381277--381307	15	2.1	15	93	0	53	48	9	35	6	1.62
381941--382054	51	2.2	52	85	3	151	33	21	23	21	1.97
382220--382278	26	2.3	26	97	2	111	47	11	16	23	1.80
382646--382708	18	3.0	22	75	17	80	25	7	20	46	1.78
384006--384041	18	2.0	18	100	0	72	11	38	5	44	1.63
385308--385355	19	2.3	21	75	20	55	27	29	2	41	1.67
385965--386087	64	2.0	63	85	9	173	19	32	12	35	1.89
386933--386963	11	2.8	11	100	0	62	0	29	6	64	1.18
389206--389270	29	2.2	29	100	0	130	18	32	20	29	1.96
389914--389978	34	1.9	34	96	0	121	20	32	9	38	1.84
401449--401539	29	3.0	31	81	15	111	36	10	31	20	1.88
406720--406767	24	2.0	24	100	0	96	12	20	25	41	1.87
407623--407687	28	2.3	28	91	0	112	36	12	44	6	1.67
427903--427949	24	1.9	25	86	4	69	27	0	44	27	1.55
427903--427969	31	2.2	31	86	0	89	31	0	43	25	1.55
427940--427993	20	2.4	23	76	11	60	37	0	35	27	1.57
428847--429091	65	3.9	64	84	10	326	32	18	39	10	1.84
428849--428959	35	3.3	35	74	16	135	30	18	39	10	1.85
443614--443639	12	2.2	12	100	0	52	15	7	30	46	1.74
452820--453017	69	2.9	69	79	2	220	40	17	18	23	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
455529--455567	15	2.4	16	83	12	53	20	17	10	51	1.74
456351--456385	17	2.1	17	100	0	70	0	17	25	57	1.40
463185--463228	21	2.1	21	100	0	88	47	18	25	9	1.77
465724--465780	28	1.9	29	89	10	89	15	35	8	40	1.79
466059--466086	14	2.0	14	100	0	56	28	0	50	21	1.49
466309--466409	33	3.1	33	81	9	125	29	5	32	31	1.81
476467--476520	27	2.0	27	100	0	108	18	33	7	40	1.78
487097--487259	71	2.3	71	92	0	272	34	21	11	33	1.89
487099--487282	71	2.6	71	88	0	206	35	20	11	32	1.89
490076--490170	48	2.0	48	97	0	181	20	27	15	36	1.93

Tables:   1   2   3